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For: Eppley JM, Tyson GW, Getz WM, Banfield JF. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics 2007;177:407-16. [PMID: 17603112 PMCID: PMC2013692 DOI: 10.1534/genetics.107.072892] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Stott C, Diop A, Raymann K, Bobay LM. Co-evolution and Gene Transfers Drive Speciation Patterns in Host-Associated Bacteria. Mol Biol Evol 2024;41:msae256. [PMID: 39686544 DOI: 10.1093/molbev/msae256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 11/12/2024] [Accepted: 12/02/2024] [Indexed: 12/18/2024]  Open
2
Zhou Z, Tran PQ, Adams AM, Kieft K, Breier JA, Fortunato CS, Sheik CS, Huber JA, Li M, Dick GJ, Anantharaman K. Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes. THE ISME JOURNAL 2023:10.1038/s41396-023-01421-0. [PMID: 37179442 DOI: 10.1038/s41396-023-01421-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 04/17/2023] [Accepted: 04/20/2023] [Indexed: 05/15/2023]
3
Gophna U, Altman-Price N. Horizontal Gene Transfer in Archaea-From Mechanisms to Genome Evolution. Annu Rev Microbiol 2022;76:481-502. [PMID: 35667126 DOI: 10.1146/annurev-micro-040820-124627] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
4
Olm MR, Crits-Christoph A, Bouma-Gregson K, Firek B, Morowitz MJ, Banfield JF. inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains. Nat Biotechnol 2021;39:727-736. [PMID: 33462508 PMCID: PMC9223867 DOI: 10.1038/s41587-020-00797-0] [Citation(s) in RCA: 258] [Impact Index Per Article: 64.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 12/11/2020] [Indexed: 01/29/2023]
5
Van Rossum T, Ferretti P, Maistrenko OM, Bork P. Diversity within species: interpreting strains in microbiomes. Nat Rev Microbiol 2020;18:491-506. [PMID: 32499497 PMCID: PMC7610499 DOI: 10.1038/s41579-020-0368-1] [Citation(s) in RCA: 234] [Impact Index Per Article: 46.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/09/2020] [Indexed: 02/06/2023]
6
Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries. mSystems 2020;5:5/1/e00731-19. [PMID: 31937678 PMCID: PMC6967389 DOI: 10.1128/msystems.00731-19] [Citation(s) in RCA: 129] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
7
Peering into the Genetic Makeup of Natural Microbial Populations Using Metagenomics. POPULATION GENOMICS: MICROORGANISMS 2018. [DOI: 10.1007/13836_2018_14] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
8
Ambur OH, Engelstädter J, Johnsen PJ, Miller EL, Rozen DE. Steady at the wheel: conservative sex and the benefits of bacterial transformation. Philos Trans R Soc Lond B Biol Sci 2017;371:rstb.2015.0528. [PMID: 27619692 PMCID: PMC5031613 DOI: 10.1098/rstb.2015.0528] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/30/2016] [Indexed: 12/25/2022]  Open
9
Wagner A, Whitaker RJ, Krause DJ, Heilers JH, van Wolferen M, van der Does C, Albers SV. Mechanisms of gene flow in archaea. Nat Rev Microbiol 2017;15:492-501. [DOI: 10.1038/nrmicro.2017.41] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
10
Tan CH, Lee KWK, Burmølle M, Kjelleberg S, Rice SA. All together now: experimental multispecies biofilm model systems. Environ Microbiol 2017;19:42-53. [DOI: 10.1111/1462-2920.13594] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
11
Mallet J, Besansky N, Hahn MW. How reticulated are species? Bioessays 2016;38:140-9. [PMID: 26709836 PMCID: PMC4813508 DOI: 10.1002/bies.201500149] [Citation(s) in RCA: 323] [Impact Index Per Article: 35.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
12
Krause DJ, Whitaker RJ. Inferring Speciation Processes from Patterns of Natural Variation in Microbial Genomes. Syst Biol 2015;64:926-35. [PMID: 26316424 PMCID: PMC4604833 DOI: 10.1093/sysbio/syv050] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2014] [Accepted: 06/09/2015] [Indexed: 01/22/2023]  Open
13
Functionally relevant diversity of closely related Nitrospira in activated sludge. ISME JOURNAL 2014;9:643-55. [PMID: 25148481 DOI: 10.1038/ismej.2014.156] [Citation(s) in RCA: 111] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Revised: 06/28/2014] [Accepted: 07/18/2014] [Indexed: 11/08/2022]
14
Gonzalez G, Koyanagi KO, Aoki K, Kitaichi N, Ohno S, Kaneko H, Ishida S, Watanabe H. Intertypic modular exchanges of genomic segments by homologous recombination at universally conserved segments in human adenovirus species D. Gene 2014;547:10-7. [PMID: 24726548 DOI: 10.1016/j.gene.2014.04.018] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2013] [Revised: 03/28/2014] [Accepted: 04/08/2014] [Indexed: 11/20/2022]
15
Horizontal gene transfer can rescue prokaryotes from Muller's ratchet: benefit of DNA from dead cells and population subdivision. G3-GENES GENOMES GENETICS 2014;4:325-39. [PMID: 24347631 PMCID: PMC3931566 DOI: 10.1534/g3.113.009845] [Citation(s) in RCA: 111] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
16
Boon E, Meehan CJ, Whidden C, Wong DHJ, Langille MGI, Beiko RG. Interactions in the microbiome: communities of organisms and communities of genes. FEMS Microbiol Rev 2014;38:90-118. [PMID: 23909933 PMCID: PMC4298764 DOI: 10.1111/1574-6976.12035] [Citation(s) in RCA: 123] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2013] [Revised: 07/02/2013] [Accepted: 07/10/2013] [Indexed: 12/17/2022]  Open
17
Sulfolobus islandicus: a model system for evolutionary genomics. Biochem Soc Trans 2013;41:458-62. [PMID: 23356328 DOI: 10.1042/bst20120338] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
18
Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC, Banfield JF. Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea. BMC Genomics 2013;14:485. [PMID: 23865623 PMCID: PMC3750248 DOI: 10.1186/1471-2164-14-485] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2013] [Accepted: 07/15/2013] [Indexed: 11/10/2022]  Open
19
Williams D, Gogarten JP, Papke RT. Quantifying homologous replacement of loci between haloarchaeal species. Genome Biol Evol 2013;4:1223-44. [PMID: 23160063 PMCID: PMC3542582 DOI: 10.1093/gbe/evs098] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
20
Fitzsimons MS, Novotny M, Lo CC, Dichosa AEK, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS. Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome. Genome Res 2013;23:878-88. [PMID: 23493677 PMCID: PMC3638143 DOI: 10.1101/gr.142208.112] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
21
Polz MF, Alm EJ, Hanage WP. Horizontal gene transfer and the evolution of bacterial and archaeal population structure. Trends Genet 2013;29:170-5. [PMID: 23332119 PMCID: PMC3760709 DOI: 10.1016/j.tig.2012.12.006] [Citation(s) in RCA: 271] [Impact Index Per Article: 22.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2012] [Revised: 11/29/2012] [Accepted: 12/18/2012] [Indexed: 12/28/2022]
22
Sympatric speciation: when is it possible in bacteria? PLoS One 2013;8:e53539. [PMID: 23349716 PMCID: PMC3547939 DOI: 10.1371/journal.pone.0053539] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2012] [Accepted: 12/03/2012] [Indexed: 11/19/2022]  Open
23
Naor A, Lapierre P, Mevarech M, Papke R, Gophna U. Low Species Barriers in Halophilic Archaea and the Formation of Recombinant Hybrids. Curr Biol 2012;22:1444-8. [DOI: 10.1016/j.cub.2012.05.056] [Citation(s) in RCA: 97] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2011] [Revised: 04/15/2012] [Accepted: 05/30/2012] [Indexed: 10/28/2022]
24
Denef VJ, Banfield JF. In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids. Science 2012;336:462-6. [DOI: 10.1126/science.1218389] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
25
Shapiro BJ, Friedman J, Cordero OX, Preheim SP, Timberlake SC, Szabó G, Polz MF, Alm EJ. Population genomics of early events in the ecological differentiation of bacteria. Science 2012;336:48-51. [PMID: 22491847 PMCID: PMC3337212 DOI: 10.1126/science.1218198] [Citation(s) in RCA: 355] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
26
Cadillo-Quiroz H, Didelot X, Held NL, Herrera A, Darling A, Reno ML, Krause DJ, Whitaker RJ. Patterns of gene flow define species of thermophilic Archaea. PLoS Biol 2012;10:e1001265. [PMID: 22363207 PMCID: PMC3283564 DOI: 10.1371/journal.pbio.1001265] [Citation(s) in RCA: 148] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2011] [Accepted: 01/06/2012] [Indexed: 12/26/2022]  Open
27
Caro-Quintero A, Konstantinidis KT. Bacterial species may exist, metagenomics reveal. Environ Microbiol 2011;14:347-55. [PMID: 22151572 DOI: 10.1111/j.1462-2920.2011.02668.x] [Citation(s) in RCA: 123] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
28
Doroghazi JR, Buckley DH. A model for the effect of homologous recombination on microbial diversification. Genome Biol Evol 2011;3:1349-56. [PMID: 22071790 PMCID: PMC3240962 DOI: 10.1093/gbe/evr110] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
29
Kämpfer P, Glaeser SP. Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited. Environ Microbiol 2011;14:291-317. [DOI: 10.1111/j.1462-2920.2011.02615.x] [Citation(s) in RCA: 92] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
30
Ajon M, Fröls S, van Wolferen M, Stoecker K, Teichmann D, Driessen AJM, Grogan DW, Albers SV, Schleper C. UV-inducible DNA exchange in hyperthermophilic archaea mediated by type IV pili. Mol Microbiol 2011;82:807-17. [DOI: 10.1111/j.1365-2958.2011.07861.x] [Citation(s) in RCA: 94] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
31
Allers T. Swapping genes to survive - a new role for archaeal type IV pili. Mol Microbiol 2011;82:789-91. [PMID: 21992544 DOI: 10.1111/j.1365-2958.2011.07860.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
32
Koren S, Treangen TJ, Pop M. Bambus 2: scaffolding metagenomes. ACTA ACUST UNITED AC 2011;27:2964-71. [PMID: 21926123 DOI: 10.1093/bioinformatics/btr520] [Citation(s) in RCA: 93] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
33
Belnap CP, Pan C, Denef VJ, Samatova NF, Hettich RL, Banfield JF. Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions. THE ISME JOURNAL 2011;5:1152-61. [PMID: 21228889 PMCID: PMC3146278 DOI: 10.1038/ismej.2010.200] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2010] [Revised: 11/05/2010] [Accepted: 11/10/2010] [Indexed: 11/08/2022]
34
Population genomics of Sinorhizobium medicae based on low-coverage sequencing of sympatric isolates. ISME JOURNAL 2011;5:1722-34. [PMID: 21562597 DOI: 10.1038/ismej.2011.55] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
35
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci U S A 2011;108:7200-5. [PMID: 21482770 DOI: 10.1073/pnas.1015622108] [Citation(s) in RCA: 236] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
36
Ladoukakis ED, Theologidis I, Rodakis GC, Zouros E. Homologous recombination between highly diverged mitochondrial sequences: examples from maternally and paternally transmitted genomes. Mol Biol Evol 2011;28:1847-59. [PMID: 21220759 DOI: 10.1093/molbev/msr007] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
37
Caro-Quintero A, Deng J, Auchtung J, Brettar I, Höfle MG, Klappenbach J, Konstantinidis KT. Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea. ISME JOURNAL 2010;5:131-40. [PMID: 20596068 DOI: 10.1038/ismej.2010.93] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
38
Doroghazi JR, Buckley DH. Widespread homologous recombination within and between Streptomyces species. ISME JOURNAL 2010;4:1136-43. [DOI: 10.1038/ismej.2010.45] [Citation(s) in RCA: 95] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
39
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME JOURNAL 2010;4:599-610. [PMID: 20164865 DOI: 10.1038/ismej.2009.158] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
40
Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Proc Natl Acad Sci U S A 2010;107:2383-90. [PMID: 20133593 PMCID: PMC2823883 DOI: 10.1073/pnas.0907041107] [Citation(s) in RCA: 108] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
41
Dworzanski JP, Dickinson DN, Deshpande SV, Snyder AP, Eckenrode BA. Discrimination and Phylogenomic Classification of Bacillus anthracis-cereus-thuringiensis Strains Based on LC-MS/MS Analysis of Whole Cell Protein Digests. Anal Chem 2009;82:145-55. [DOI: 10.1021/ac9015648] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
42
Johnson PLF, Slatkin M. Inference of microbial recombination rates from metagenomic data. PLoS Genet 2009;5:e1000674. [PMID: 19798447 PMCID: PMC2745702 DOI: 10.1371/journal.pgen.1000674] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2009] [Accepted: 09/02/2009] [Indexed: 11/18/2022]  Open
43
Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Community-wide analysis of microbial genome sequence signatures. Genome Biol 2009;10:R85. [PMID: 19698104 PMCID: PMC2745766 DOI: 10.1186/gb-2009-10-8-r85] [Citation(s) in RCA: 385] [Impact Index Per Article: 24.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2009] [Revised: 07/10/2009] [Accepted: 08/21/2009] [Indexed: 11/10/2022]  Open
44
Brocks JJ, Banfield J. Unravelling ancient microbial history with community proteogenomics and lipid geochemistry. Nat Rev Microbiol 2009;7:601-9. [PMID: 19609261 DOI: 10.1038/nrmicro2167] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
45
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms. Appl Environ Microbiol 2009;75:4599-615. [PMID: 19429552 DOI: 10.1128/aem.02943-08] [Citation(s) in RCA: 149] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
46
Wilmes P, Simmons SL, Denef VJ, Banfield JF. The dynamic genetic repertoire of microbial communities. FEMS Microbiol Rev 2008;33:109-32. [PMID: 19054116 PMCID: PMC2704941 DOI: 10.1111/j.1574-6976.2008.00144.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
47
Simmons SL, DiBartolo G, Denef VJ, Goltsman DSA, Thelen MP, Banfield JF. Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol 2008;6:e177. [PMID: 18651792 PMCID: PMC2475542 DOI: 10.1371/journal.pbio.0060177] [Citation(s) in RCA: 98] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2008] [Accepted: 06/12/2008] [Indexed: 12/20/2022]  Open
48
Vos M, Didelot X. A comparison of homologous recombination rates in bacteria and archaea. ISME JOURNAL 2008;3:199-208. [PMID: 18830278 DOI: 10.1038/ismej.2008.93] [Citation(s) in RCA: 390] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
49
Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF. Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environ Microbiol 2008;11:313-25. [PMID: 18826438 DOI: 10.1111/j.1462-2920.2008.01769.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Konstantinidis KT, DeLong EF. Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. ISME JOURNAL 2008;2:1052-65. [PMID: 18580971 DOI: 10.1038/ismej.2008.62] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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