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Du Z, Zhao C, Li J, Shen Y, Ren G, Ding J, Peng J, Ye X, Miao J. Ginsenosides and gut microbiota: differential effects on healthy individuals and irritable bowel syndrome subtypes. PeerJ 2025; 13:e19223. [PMID: 40256741 PMCID: PMC12007494 DOI: 10.7717/peerj.19223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Accepted: 03/06/2025] [Indexed: 04/22/2025] Open
Abstract
Background Irritable bowel syndrome (IBS) is a common gastrointestinal disorder with poorly understood mechanisms. Variations in gut microbiota composition are observed in different IBS subtypes. Ginsenosides have shown potential in alleviating IBS symptoms, but their interactions with gut microbiota in different IBS subtypes are not well studied. Methods In this study, we investigated the effects of ginsenosides on the gut microbiota of both healthy participants and participants suffering from IBS characterized by diarrhea (IBS-D) or constipation (IBS-C), using in vitro fermentation alongside 16S rRNA sequencing and bioinformatics analyses. Results The analysis demonstrated that there were no statistically significant alterations in α- or β-diversity between the ginsenosides-treated and control groups across all models. However, the microbial composition assessment revealed the presence of 51 shared genera, with notable variations in composition and a significant enrichment of specific taxa. Specifically, the LEfSe analysis revealed that, following ginsenosides treatment, the healthy model groups exhibited significant enrichment of Stenotrophomonas and Achromobacter, while the IBS-D model groups demonstrated significant enrichment of Pseudomonas and Stenotrophomonas. Conclusions The results elucidate the distinctive microbial signatures associated with ginsenosides treatment across both healthy and IBS-D groups, underscoring the potential therapeutic efficacy of ginsenosides in modulating gut microbiota. This study highlights the necessity for further investigation into targeted microbiome therapies for IBS, which may facilitate the development of more personalized and efficacious treatment strategies for gastrointestinal health.
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Affiliation(s)
- Zhi Du
- Department of Pharmacy, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang, China
- Research Center for Clinical Pharmacy, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Chengman Zhao
- Department of Gastroenterology, Affiliated Xiaoshan Hospital, Hangzhou Normal University, Hangzhou, Zhejiang, China
| | - Jiabin Li
- Department of Pharmacy, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang, China
- Research Center for Clinical Pharmacy, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Yan Shen
- Research Center for Clinical Pharmacy, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Guofei Ren
- Department of Pharmacy, Affiliated Xiaoshan Hospital, Hangzhou Normal University, Hangzhou, Zhejiang, China
| | - Jieying Ding
- Department of Pharmacy, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang, China
- Research Center for Clinical Pharmacy, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Jing Peng
- Department of Pharmacy, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang, China
- Research Center for Clinical Pharmacy, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Xiaoli Ye
- Department of Medical Administration, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang, China
| | - Jing Miao
- Department of Pharmacy, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang, China
- Research Center for Clinical Pharmacy, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, China
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de Oliveira VF, de Britto-Costa LF, de Aragão GL, Scaccia N, Mamana AC, Côrtes MF, de Oliveira MS, de Melo Tavares B, Manuli ER, Leal FE, de Oliveira Xavier GT, Grespan RMZ, Sequeira CCR, Nunes FLS, Dropa M, Martone-Rocha S, Razzolini MTP, Sabino EC, Padoveze MC, Holmes A, Costa SF, Levin AS. Colonisation by multidrug-resistant organisms in health workers in primary care: narrow spectrum oral antimicrobials are a risk factor. Eur J Clin Microbiol Infect Dis 2024; 43:2323-2333. [PMID: 39320520 DOI: 10.1007/s10096-024-04953-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Accepted: 09/20/2024] [Indexed: 09/26/2024]
Abstract
BACKGROUND Limited information exists on carriage of multidrug-resistant organisms (MDRO) by health workers (HWs) in primary care settings. This study aims to determine the prevalence of MDRO carriage among HWs in primary care and to identify associated risk factors. METHODS A cross-sectional study was conducted across all 12 primary care units in São Caetano do Sul-SP, Brazil, from October to December 2023. Self-collected samples (nasal, oropharyngeal, and inguinal) were obtained. Environment cultures (potable water, sewage and stream water) were evaluated. Stenotrophomonas maltophilia isolates (human and environmental) were typed. RESULTS The study included 265/288 (92%) of HWs in primary care teams, mostly women with a median age of 47 years (IQR 38-57); 78% had no comorbidities. MDRO colonisation was found in 8.7% (23 HWs). The following bacteria were found: S. maltophilia (n = 9; 3.4%) in inguinal swabs; methicillin-resistant Staphylococcus aureus (n = 8; 3%) from all sites; extended-spectrum ß-lactamase-producing bacteria (n = 5; 2%) in inguinal swabs; and vancomycin-resistant enterococci in an inguinal swab (n = 1; 0.4%). Previous antibiotic use was significantly associated with MDRO colonisation (OR 2.91, 95% CI 1.19-7.09, p = 0.018), mainly narrow spectrum oral beta-lactams and macrolides. S. malthophilia was polyclonal and human and environmental isolates differed. CONCLUSION Colonisation by MRSA, VRE, and ESBL-producing bacteria was low; however, 4% were surprisingly colonized by polyclonal S. maltophilia. This pathogen may also suggest using narrow-spectrum rather than the expected broad-spectrum antimicrobials. Antibiotic use was the only risk factor found, mainly with oral narrow-spectrum drugs.
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Affiliation(s)
- Vítor Falcão de Oliveira
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil.
| | | | | | - Nazareno Scaccia
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Ana Carolina Mamana
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Marina Farrel Côrtes
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Maura Salaroli de Oliveira
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Bruno de Melo Tavares
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Erika Regina Manuli
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
- Departamento de Pesquisa Clínica E Inovação Em Saúde, Universidade Municipal de São Caetano Do Sul, Sao Paulo, Brazil
| | - Fábio Eudes Leal
- Departamento de Pesquisa Clínica E Inovação Em Saúde, Universidade Municipal de São Caetano Do Sul, Sao Paulo, Brazil
- Divisão de Pesquisa Clínica (DIPETEC), Instituto Nacional Do Câncer, Rio de Janeiro, Brazil
| | | | - Regina Maura Zetone Grespan
- Departamento de Pesquisa Clínica E Inovação Em Saúde, Universidade Municipal de São Caetano Do Sul, Sao Paulo, Brazil
| | - Cibele Cristine Remondes Sequeira
- Municipal Health Department, Primary Health System, Sao Caetano Do Sul, Sao Paulo, Brazil
- Departamento de Pesquisa Clínica E Inovação Em Saúde, Universidade Municipal de São Caetano Do Sul, Sao Paulo, Brazil
| | - Fatima L S Nunes
- Laboratory for Informatics Applications in Health, School of Arts, Humanities and Science, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Milena Dropa
- School of Public Health, Universidade de Sao Paulo, Sao Paulo, Brazil
| | | | | | - Ester Cerdeira Sabino
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
- Departamento de Pesquisa Clínica E Inovação Em Saúde, Universidade Municipal de São Caetano Do Sul, Sao Paulo, Brazil
| | | | - Alison Holmes
- University of Liverpool and Imperial College London, London, UK
| | - Silvia F Costa
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
| | - Anna S Levin
- Division of Infectious Diseases, Hospital das Clinicas, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
- Institute of Tropical Medicine, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, Brazil
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Valentová L, Füzik T, Nováček J, Hlavenková Z, Pospíšil J, Plevka P. Structure and replication of Pseudomonas aeruginosa phage JBD30. EMBO J 2024; 43:4384-4405. [PMID: 39143239 PMCID: PMC11445458 DOI: 10.1038/s44318-024-00195-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 07/10/2024] [Accepted: 07/24/2024] [Indexed: 08/16/2024] Open
Abstract
Bacteriophages are the most abundant biological entities on Earth, but our understanding of many aspects of their lifecycles is still incomplete. Here, we have structurally analysed the infection cycle of the siphophage Casadabanvirus JBD30. Using its baseplate, JBD30 attaches to Pseudomonas aeruginosa via the bacterial type IV pilus, whose subsequent retraction brings the phage to the bacterial cell surface. Cryo-electron microscopy structures of the baseplate-pilus complex show that the tripod of baseplate receptor-binding proteins attaches to the outer bacterial membrane. The tripod and baseplate then open to release three copies of the tape-measure protein, an event that is followed by DNA ejection. JBD30 major capsid proteins assemble into procapsids, which expand by 7% in diameter upon filling with phage dsDNA. The DNA-filled heads are finally joined with 180-nm-long tails, which bend easily because flexible loops mediate contacts between the successive discs of major tail proteins. It is likely that the structural features and replication mechanisms described here are conserved among siphophages that utilize the type IV pili for initial cell attachment.
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Affiliation(s)
- Lucie Valentová
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Tibor Füzik
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Jiří Nováček
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Zuzana Hlavenková
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Jakub Pospíšil
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Pavel Plevka
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
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Furst KE, Graham KE, Weisman RJ, Adusei KB. It's getting hot in here: Effects of heat on temperature, disinfection, and opportunistic pathogens in drinking water distribution systems. WATER RESEARCH 2024; 260:121913. [PMID: 38901309 DOI: 10.1016/j.watres.2024.121913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 06/06/2024] [Accepted: 06/07/2024] [Indexed: 06/22/2024]
Abstract
As global temperatures rise with climate change, the negative effects of heat on drinking water distribution systems (DWDS) are of increasing concern. High DWDS temperatures are associated with degradation of water quality through physical, chemical and microbial mechanisms. Perhaps the most pressing concern is proliferation of thermotolerant opportunistic pathogens (OPs) like Legionella pneumophila and Naegleria Fowleri. Many OPs can be controlled in DWDS by residual disinfectants such as chlorine or chloramine, but maintaining protective residuals can be challenging at high temperatures. This critical review evaluates the literature on DWDS temperature, residual disinfectant decay, and OP survival and growth with respect to high temperatures. The findings are synthesized to determine the state of knowledge and future research priorities regarding OP proliferation and control at high DWDS temperatures. Temperatures above 40 °C were reported from multiple DWDS, with a maximum of 52 °C. Substantial diurnal temperature swings from ∼30-50 °C occurred in one DWDS. Many OPs can survive or even replicate at these temperatures. However, most studies focused on just a few OP species, and substantial knowledge gaps remain regarding persistence, infectivity, and shifts in microbial community structure at high temperatures relative to lower water temperatures. Chlorine decay rates substantially increase with temperature in some waters but not in others, for reasons that are not well understood. Decay rates within real DWDS are difficult to accurately characterize, presenting practical limitations for application of temperature-dependent decay models at full scale. Chloramine decay is slower than chlorine except in the presence of nitrifiers, which are especially known to grow in DWDS in warmer seasons and climates, though the high temperature range for nitrification is unknown. Lack of knowledge about DWDS nitrifier communities may hinder development of solutions. Fundamental knowledge gaps remain which prevent understanding even the occurrence of high temperatures in DWDS, much less the overall effect on exposure risk. Potential solutions to minimize DWDS temperatures or mitigate the impacts of heat were identified, many which could be aided by proven models for predicting DWDS temperature. Industry leadership and collaboration is needed to generate practical knowledge for protecting DWDS water quality as temperatures rise.
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Affiliation(s)
- Kirin E Furst
- Department of Civil, Environmental, & Infrastructure Engineering, George Mason University, 4400 University Drive, Fairfax, VA 22030, United States.
| | - Katherine E Graham
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332, United States
| | - Richard J Weisman
- Department of Civil, Environmental, & Infrastructure Engineering, George Mason University, 4400 University Drive, Fairfax, VA 22030, United States
| | - Kadmiel B Adusei
- Department of Civil, Environmental, & Infrastructure Engineering, George Mason University, 4400 University Drive, Fairfax, VA 22030, United States
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Schubert A, Harrison J, Kent-Buchanan L, Bonds V, McElmurry SP, Love NG. A point-of-use drinking water quality dataset from fieldwork in Detroit, Michigan. Sci Data 2024; 11:443. [PMID: 38702401 PMCID: PMC11068869 DOI: 10.1038/s41597-024-03298-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 04/23/2024] [Indexed: 05/06/2024] Open
Abstract
Drinking water quality sensor technology has rapidly advanced, facilitating the collection of rich datasets and real-time analytics. However, sensors have not yet been widely applied to monitor drinking water quality in premise plumbing. Richer quality of data in premise plumbing offers an improved understanding of the quality of drinking water present at the point-of-use. In this paper, online drinking water quality sensor nodes were temporarily installed in twenty-four homes in Detroit, Michigan. The water quality sensor nodes took measurements of five drinking water quality parameters every five minutes for four weeks. Additionally, free chlorine and lead were sampled periodically within each home. Together, these data make up a dataset that captures drinking water quality over time in a legacy city with an oversized drinking water system. This dataset offers more frequent measurements amongst more sample homes than are typically available in premise plumbing or at the tap. The data can be used to investigate temporal trends in drinking water quality, including diurnal patterns and anomaly detection. Additionally, this dataset could be utilized to evaluate water quality in comparison with other cities.
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Affiliation(s)
- Alyssa Schubert
- University of Michigan, Department of Civil and Environmental Engineering, Ann Arbor, USA
| | - Jacob Harrison
- University of Michigan, Department of Civil and Environmental Engineering, Ann Arbor, USA
| | | | | | - Shawn P McElmurry
- Wayne State University, Department of Civil and Environmental Engineering, Detroit, USA
| | - Nancy G Love
- University of Michigan, Department of Civil and Environmental Engineering, Ann Arbor, USA.
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Gao S, Sutton NB, Wagner TV, Rijnaarts HHM, van der Wielen PWJJ. Influence of combined abiotic/biotic factors on decay of P. aeruginosa and E. coli in Rhine River water. Appl Microbiol Biotechnol 2024; 108:294. [PMID: 38598011 PMCID: PMC11399167 DOI: 10.1007/s00253-024-13128-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 03/14/2024] [Accepted: 03/25/2024] [Indexed: 04/11/2024]
Abstract
Understanding the dynamic change in abundance of both fecal and opportunistic waterborne pathogens in urban surface water under different abiotic and biotic factors helps the prediction of microbiological water quality and protection of public health during recreational activities, such as swimming. However, a comprehensive understanding of the interaction among various factors on pathogen behavior in surface water is missing. In this study, the effect of salinity, light, and temperature and the presence of indigenous microbiota, on the decay/persistence of Escherichia coli and Pseudomonas aeruginosa in Rhine River water were tested during 7 days of incubation with varying salinity (0.4, 5.4, 9.4, and 15.4 ppt), with light under a light/dark regime (light/dark) and without light (dark), temperature (3, 12, and 20 °C), and presence/absence of indigenous microbiota. The results demonstrated that light, indigenous microbiota, and temperature significantly impacted the decay of E. coli. Moreover, a significant (p<0.01) four-factor interactive impact of these four environmental conditions on E. coli decay was observed. However, for P. aeruginosa, temperature and indigenous microbiota were two determinate factors on the decay or growth. A significant three-factor interactive impact between indigenous microbiota, temperature, and salinity (p<0.01); indigenous microbiota, light, and temperature (p<0.01); and light, temperature, and salinity (p<0.05) on the decay of P. aeruginosa was found. Due to these interactive effects, caution should be taken when predicting decay/persistence of E. coli and P. aeruginosa in surface water based on a single environmental condition. In addition, the different response of E. coli and P. aeruginosa to the environmental conditions highlights that E. coli monitoring alone underestimates health risks of surface water by non-fecal opportunistic pathogens, such as P. aeruginosa. KEY POINTS: Abiotic and biotic factors interactively affect decay of E. coli and P. aeruginosa E.coli and P.aeruginosa behave significantly different under the given conditions Only E. coli as an indicator underestimates the microbiological water quality.
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Affiliation(s)
- Sha Gao
- Department of Environmental Technology, Wageningen University, PO Box 17, 6700EV, Wageningen, The Netherlands
| | - Nora B Sutton
- Department of Environmental Technology, Wageningen University, PO Box 17, 6700EV, Wageningen, The Netherlands.
| | - Thomas V Wagner
- Department of Environmental Technology, Wageningen University, PO Box 17, 6700EV, Wageningen, The Netherlands
| | - Huub H M Rijnaarts
- Department of Environmental Technology, Wageningen University, PO Box 17, 6700EV, Wageningen, The Netherlands
| | - Paul W J J van der Wielen
- KWR Water Research Institute, Groningenhaven 7, 3433PE, Nieuwegein, The Netherlands
- Laboratory of Microbiology, Wageningen University, PO Box 17, 6700EV, Wageningen, The Netherlands
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Kapetanović D, Katouli M, Lušić DV. Microbial Communities in Changing Aquatic Environments. Microorganisms 2024; 12:726. [PMID: 38674670 PMCID: PMC11051731 DOI: 10.3390/microorganisms12040726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Revised: 03/22/2024] [Accepted: 03/29/2024] [Indexed: 04/28/2024] Open
Abstract
The quality of aquatic ecosystems is an important public health concern [...].
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Affiliation(s)
| | - Mohammad Katouli
- Centre for Genecology, School of Health and Sport Sciences, University of the Sunshine Coast, Sippy Downs, QLD 4556, Australia;
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