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Epiney D, Morales Chaya GN, Dillon NR, Lai SL, Doe CQ. Transcriptional complexity in the insect central complex: single nuclei RNA-sequencing of adult brain neurons derived from type 2 neuroblasts. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2023.12.10.571022. [PMID: 40093129 PMCID: PMC11908175 DOI: 10.1101/2023.12.10.571022] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
In both invertebrates such as Drosophila and vertebrates such as mouse or human, the brain contains the most diverse population of cell types of any tissue. It is generally accepted that transcriptional diversity is an early step in generating neuronal and glial diversity, followed by the establishment of a unique gene expression profile that determines morphology, connectivity, and function. In Drosophila, there are two types of neural stem cells, called Type 1 (T1) and Type 2 (T2) neuroblasts. In contrast to T1 neuroblasts, T2 neuroblasts generate intermediate neural progenitors (INPs) that expand the number and diversity of cell types. The diversity of T2-derived neurons contributes a large portion of the central complex (CX), a conserved brain region that plays a role in sensorimotor integration. Recent work has revealed much of the connectome of the CX, but how this connectome is assembled remains unclear. Mapping the transcriptional diversity of neurons derived from T2 neuroblasts is a necessary step in linking transcriptional profile to the assembly of the adult brain. Here we perform single nuclei RNA sequencing of T2 neuroblast-derived adult neurons and glia. We identify clusters containing all known classes of glia, clusters that are male/female enriched, and 161 neuron-specific clusters. We map neurotransmitter and neuropeptide expression and identify unique transcription factor combinatorial codes for each cluster (presumptive neuron subtype). This is a necessary step that directs functional studies to determine whether each transcription factor combinatorial code specifies a distinct neuron type within the CX. We map several columnar neuron subtypes to distinct clusters and identify two neuronal classes (NPF+ and AstA+) that both map to two closely related clusters. Our data support the hypothesis that each transcriptional cluster represents one or a few closely related neuron subtypes.
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Affiliation(s)
| | | | | | - Sen-Lin Lai
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403
| | - Chris Q. Doe
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403
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2
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Dillon NR, Doe CQ. Castor is a temporal transcription factor that specifies early born central complex neuron identity. Development 2024; 151:dev204318. [PMID: 39620972 DOI: 10.1242/dev.204318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2024] [Accepted: 11/20/2024] [Indexed: 12/17/2024]
Abstract
The generation of neuronal diversity is important for brain function, but how diversity is generated is incompletely understood. We used the development of the Drosophila central complex (CX) to address this question. The CX develops from eight bilateral Type 2 neuroblasts (T2NBs), which generate hundreds of different neuronal types. T2NBs express broad opposing temporal gradients of RNA-binding proteins. It remains unknown whether these protein gradients are sufficient to directly generate all known neuronal diversity, or whether there are temporal transcription factors (TTFs) with narrow expression windows that each specify a small subset of CX neuron identities. Multiple candidate TTFs have been identified, but their function remains uncharacterized. Here, we show that: (1) the adult E-PG neurons are born from early larval T2NBs; (2) the candidate TTF Castor is expressed transiently in early larval T2NBs when E-PG and P-EN neurons are born; and (3) Castor is required to specify early born E-PG and P-EN neuron identities. We conclude that Castor is a TTF in larval T2NB lineages that specifies multiple, early born CX neuron identities.
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Affiliation(s)
- Noah R Dillon
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
| | - Chris Q Doe
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
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3
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Rozenfeld E, Parnas M. Neuronal circuit mechanisms of competitive interaction between action-based and coincidence learning. SCIENCE ADVANCES 2024; 10:eadq3016. [PMID: 39642217 PMCID: PMC11623277 DOI: 10.1126/sciadv.adq3016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 10/30/2024] [Indexed: 12/08/2024]
Abstract
How information is integrated across different forms of learning is crucial to understanding higher cognitive functions. Animals form classic or operant associations between cues and their outcomes. It is believed that a prerequisite for operant conditioning is the formation of a classical association. Thus, both memories coexist and are additive. However, the two memories can result in opposing behavioral responses, which can be disadvantageous. We show that Drosophila classical and operant olfactory conditioning rely on distinct neuronal pathways leading to different behavioral responses. Plasticity in both pathways cannot be formed simultaneously. If plasticity occurs at both pathways, interference between them occurs and learning is disrupted. Activity of the navigation center is required to prevent plasticity in the classical pathway and enable it in the operant pathway. These findings fundamentally challenge hierarchical views of operant and classical learning and show that active processes prevent coexistence of the two memories.
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Affiliation(s)
- Eyal Rozenfeld
- Department of Physiology and Pharmacology, Faculty of Medical and Health Sciences, Tel Aviv University, Tel Aviv 69978, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 69978, Israel
| | - Moshe Parnas
- Department of Physiology and Pharmacology, Faculty of Medical and Health Sciences, Tel Aviv University, Tel Aviv 69978, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 69978, Israel
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4
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Pabst K, Gkanias E, Webb B, Homberg U, Endres D. A computational model for angular velocity integration in a locust heading circuit. PLoS Comput Biol 2024; 20:e1012155. [PMID: 39705331 DOI: 10.1371/journal.pcbi.1012155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 01/06/2025] [Accepted: 11/25/2024] [Indexed: 12/22/2024] Open
Abstract
Accurate navigation often requires the maintenance of a robust internal estimate of heading relative to external surroundings. We present a model for angular velocity integration in a desert locust heading circuit, applying concepts from early theoretical work on heading circuits in mammals to a novel biological context in insects. In contrast to similar models proposed for the fruit fly, this circuit model uses a single 360° heading direction representation and is updated by neuromodulatory angular velocity inputs. Our computational model was implemented using steady-state firing rate neurons with dynamical synapses. The circuit connectivity was constrained by biological data, and remaining degrees of freedom were optimised with a machine learning approach to yield physiologically plausible neuron activities. We demonstrate that the integration of heading and angular velocity in this circuit is robust to noise. The heading signal can be effectively used as input to an existing insect goal-directed steering circuit, adapted for outbound locomotion in a steady direction that resembles locust migration. Our study supports the possibility that similar computations for orientation may be implemented differently in the neural hardware of the fruit fly and the locust.
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Affiliation(s)
- Kathrin Pabst
- Department of Psychology, Philipps-Universität Marburg, Marburg, Hesse, Germany
- Center for Mind, Brain and Behavior (CMBB), Philipps-Universität Marburg, Justus Liebig Universität Giessen, and Technische Universität Darmstadt, Hesse, Germany
| | - Evripidis Gkanias
- School of Informatics, University of Edinburgh, Edinburgh, Scotland, United Kingdom
| | - Barbara Webb
- School of Informatics, University of Edinburgh, Edinburgh, Scotland, United Kingdom
| | - Uwe Homberg
- Center for Mind, Brain and Behavior (CMBB), Philipps-Universität Marburg, Justus Liebig Universität Giessen, and Technische Universität Darmstadt, Hesse, Germany
- Department of Biology, Philipps-Universität Marburg, Marburg, Hesse, Germany
| | - Dominik Endres
- Department of Psychology, Philipps-Universität Marburg, Marburg, Hesse, Germany
- Center for Mind, Brain and Behavior (CMBB), Philipps-Universität Marburg, Justus Liebig Universität Giessen, and Technische Universität Darmstadt, Hesse, Germany
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5
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Vinograd A, Nair A, Kim JH, Linderman SW, Anderson DJ. Causal evidence of a line attractor encoding an affective state. Nature 2024; 634:910-918. [PMID: 39142337 PMCID: PMC11499281 DOI: 10.1038/s41586-024-07915-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Accepted: 08/06/2024] [Indexed: 08/16/2024]
Abstract
Continuous attractors are an emergent property of neural population dynamics that have been hypothesized to encode continuous variables such as head direction and eye position1-4. In mammals, direct evidence of neural implementation of a continuous attractor has been hindered by the challenge of targeting perturbations to specific neurons within contributing ensembles2,3. Dynamical systems modelling has revealed that neurons in the hypothalamus exhibit approximate line-attractor dynamics in male mice during aggressive encounters5. We have previously hypothesized that these dynamics may encode the variable intensity and persistence of an aggressive internal state. Here we report that these neurons also showed line-attractor dynamics in head-fixed mice observing aggression6. This allowed us to identify and manipulate line-attractor-contributing neurons using two-photon calcium imaging and holographic optogenetic perturbations. On-manifold perturbations yielded integration of optogenetic stimulation pulses and persistent activity that drove the system along the line attractor, while transient off-manifold perturbations were followed by rapid relaxation back into the attractor. Furthermore, single-cell stimulation and imaging revealed selective functional connectivity among attractor-contributing neurons. Notably, individual differences among mice in line-attractor stability were correlated with the degree of functional connectivity among attractor-contributing neurons. Mechanistic recurrent neural network modelling indicated that dense subnetwork connectivity and slow neurotransmission7 best recapitulate our empirical findings. Our work bridges circuit and manifold levels3, providing causal evidence of continuous attractor dynamics encoding an affective internal state in the mammalian hypothalamus.
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Affiliation(s)
- Amit Vinograd
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech, Pasadena, CA, USA
- Howard Hughes Medical Institute, Chevy Chase, MD, USA
| | - Aditya Nair
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech, Pasadena, CA, USA
- Howard Hughes Medical Institute, Chevy Chase, MD, USA
| | - Joseph H Kim
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech, Pasadena, CA, USA
| | - Scott W Linderman
- Department of Statistics, Stanford University, Stanford, CA, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
| | - David J Anderson
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech, Pasadena, CA, USA.
- Howard Hughes Medical Institute, Chevy Chase, MD, USA.
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6
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Dan C, Hulse BK, Kappagantula R, Jayaraman V, Hermundstad AM. A neural circuit architecture for rapid learning in goal-directed navigation. Neuron 2024; 112:2581-2599.e23. [PMID: 38795708 DOI: 10.1016/j.neuron.2024.04.036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 01/16/2024] [Accepted: 04/30/2024] [Indexed: 05/28/2024]
Abstract
Anchoring goals to spatial representations enables flexible navigation but is challenging in novel environments when both representations must be acquired simultaneously. We propose a framework for how Drosophila uses internal representations of head direction (HD) to build goal representations upon selective thermal reinforcement. We show that flies use stochastically generated fixations and directed saccades to express heading preferences in an operant visual learning paradigm and that HD neurons are required to modify these preferences based on reinforcement. We used a symmetric visual setting to expose how flies' HD and goal representations co-evolve and how the reliability of these interacting representations impacts behavior. Finally, we describe how rapid learning of new goal headings may rest on a behavioral policy whose parameters are flexible but whose form is genetically encoded in circuit architecture. Such evolutionarily structured architectures, which enable rapidly adaptive behavior driven by internal representations, may be relevant across species.
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Affiliation(s)
- Chuntao Dan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Brad K Hulse
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Ramya Kappagantula
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Vivek Jayaraman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
| | - Ann M Hermundstad
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
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7
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Sharma AK, Randi F, Kumar S, Dvali S, Leifer AM. TWISP: a transgenic worm for interrogating signal propagation in Caenorhabditis elegans. Genetics 2024; 227:iyae077. [PMID: 38733622 PMCID: PMC11228852 DOI: 10.1093/genetics/iyae077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Revised: 02/11/2024] [Accepted: 04/11/2024] [Indexed: 05/13/2024] Open
Abstract
Genetically encoded optical indicators and actuators of neural activity allow for all-optical investigations of signaling in the nervous system. But commonly used indicators, actuators, and expression strategies are poorly suited for systematic measurements of signal propagation at brain scale and cellular resolution. Large-scale measurements of the brain require indicators and actuators with compatible excitation spectra to avoid optical crosstalk. They must be highly expressed in every neuron but at the same time avoid lethality and permit the animal to reach adulthood. Their expression must also be compatible with additional fluorescent labels to locate and identify neurons, such as those in the NeuroPAL cell identification system. We present TWISP, a transgenic worm for interrogating signal propagation, that addresses these needs and enables optical measurements of evoked calcium activity at brain scale and cellular resolution in the nervous system of the nematode Caenorhabditis elegans. In every neuron we express a nonconventional optical actuator, the gustatory receptor homolog GUR-3 + PRDX-2, under the control of a drug-inducible system QF + hGR, and a calcium indicator GCAMP6s, in a background with additional fluorophores from the NeuroPAL cell ID system. We show that this combination, but not others tested, avoids optical crosstalk, creates strong expression in the adult, and generates stable transgenic lines for systematic measurements of signal propagation in the worm brain.
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Affiliation(s)
- Anuj Kumar Sharma
- Department of Physics, Princeton University, Princeton, NJ 08544, USA
| | - Francesco Randi
- Department of Physics, Princeton University, Princeton, NJ 08544, USA
| | - Sandeep Kumar
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
| | - Sophie Dvali
- Department of Physics, Princeton University, Princeton, NJ 08544, USA
| | - Andrew M Leifer
- Department of Physics, Princeton University, Princeton, NJ 08544, USA
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
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8
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Boto T, Tomchik SM. Functional Imaging of Learning-Induced Plasticity in the Central Nervous System with Genetically Encoded Reporters in Drosophila. Cold Spring Harb Protoc 2024; 2024:pdb.top107799. [PMID: 37197830 DOI: 10.1101/pdb.top107799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Learning and memory allow animals to adjust their behavior based on the predictive value of their past experiences. Memories often exist in complex representations, spread across numerous cells and synapses in the brain. Studying relatively simple forms of memory provides insights into the fundamental processes that underlie multiple forms of memory. Associative learning occurs when an animal learns the relationship between two previously unrelated sensory stimuli, such as when a hungry animal learns that a particular odor is followed by a tasty reward. Drosophila is a particularly powerful model to study how this type of memory works. The fundamental principles are widely shared among animals, and there is a wide range of genetic tools available to study circuit function in flies. In addition, the olfactory structures that mediate associative learning in flies, such as the mushroom body and its associated neurons, are anatomically organized, relatively well-characterized, and readily accessible to imaging. Here, we review the olfactory anatomy and physiology of the olfactory system, describe how plasticity in the olfactory pathway mediates learning and memory, and explain the general principles underlying calcium imaging approaches.
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Affiliation(s)
- Tamara Boto
- Department of Physiology, Trinity College Dublin, Dublin 2, Ireland
- Trinity College Institute of Neuroscience, Trinity College Dublin, Dublin 2, Ireland
| | - Seth M Tomchik
- Neuroscience and Pharmacology, University of Iowa Carver College of Medicine, Iowa City, Iowa 52242, USA
- Stead Family Department of Pediatrics, University of Iowa Carver College of Medicine, Iowa City, Iowa 52242, USA
- Iowa Neuroscience Institute, University of Iowa Carver College of Medicine, Iowa City, Iowa 52242, USA
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9
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van der Goes MSH, Voigts J, Newman JP, Toloza EHS, Brown NJ, Murugan P, Harnett MT. Coordinated head direction representations in mouse anterodorsal thalamic nucleus and retrosplenial cortex. eLife 2024; 13:e82952. [PMID: 38470232 PMCID: PMC10932540 DOI: 10.7554/elife.82952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 02/23/2024] [Indexed: 03/13/2024] Open
Abstract
The sense of direction is critical for survival in changing environments and relies on flexibly integrating self-motion signals with external sensory cues. While the anatomical substrates involved in head direction (HD) coding are well known, the mechanisms by which visual information updates HD representations remain poorly understood. Retrosplenial cortex (RSC) plays a key role in forming coherent representations of space in mammals and it encodes a variety of navigational variables, including HD. Here, we use simultaneous two-area tetrode recording to show that RSC HD representation is nearly synchronous with that of the anterodorsal nucleus of thalamus (ADn), the obligatory thalamic relay of HD to cortex, during rotation of a prominent visual cue. Moreover, coordination of HD representations in the two regions is maintained during darkness. We further show that anatomical and functional connectivity are consistent with a strong feedforward drive of HD information from ADn to RSC, with anatomically restricted corticothalamic feedback. Together, our results indicate a concerted global HD reference update across cortex and thalamus.
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Affiliation(s)
- Marie-Sophie H van der Goes
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Jakob Voigts
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
- Open-Ephys IncAtlantaUnited States
- HHMI Janelia Research CampusAshburnUnited States
| | - Jonathan P Newman
- Open-Ephys IncAtlantaUnited States
- Department of Brain & Cognitive Sciences, Picower Institute for Learning and Memory, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Enrique HS Toloza
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
- Department of Physics, Massachusetts Institute of TechnologyCambridgeUnited States
- Harvard Medical SchoolBostonUnited States
| | - Norma J Brown
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Pranav Murugan
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Mark T Harnett
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
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10
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Cardona A. Wiring up for controlled flight. eLife 2024; 13:e95989. [PMID: 38436656 PMCID: PMC10911749 DOI: 10.7554/elife.95989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2024] Open
Abstract
A map showing how neurons that process motion are wired together in the visual system of fruit flies provides new insights into how animals navigate and remain stable when flying.
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Affiliation(s)
- Albert Cardona
- MRC Laboratory of Molecular Biology, University of CambridgeCambridgeUnited Kingdom
- Department of Physiology, Development and Neuroscience, University of CambridgeCambridgeUnited Kingdom
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11
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Brezovec BE, Berger AB, Hao YA, Chen F, Druckmann S, Clandinin TR. Mapping the neural dynamics of locomotion across the Drosophila brain. Curr Biol 2024; 34:710-726.e4. [PMID: 38242122 DOI: 10.1016/j.cub.2023.12.063] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 11/13/2023] [Accepted: 12/20/2023] [Indexed: 01/21/2024]
Abstract
Locomotion engages widely distributed networks of neurons. However, our understanding of the spatial architecture and temporal dynamics of the networks that underpin walking remains incomplete. We use volumetric two-photon imaging to map neural activity associated with walking across the entire brain of Drosophila. We define spatially clustered neural signals selectively associated with changes in either forward or angular velocity, demonstrating that neurons with similar behavioral selectivity are clustered. These signals reveal distinct topographic maps in diverse brain regions involved in navigation, memory, sensory processing, and motor control, as well as regions not previously linked to locomotion. We identify temporal trajectories of neural activity that sweep across these maps, including signals that anticipate future movement, representing the sequential engagement of clusters with different behavioral specificities. Finally, we register these maps to a connectome and identify neural networks that we propose underlie the observed signals, setting a foundation for subsequent circuit dissection. Overall, our work suggests a spatiotemporal framework for the emergence and execution of complex walking maneuvers and links this brain-wide neural activity to single neurons and local circuits.
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Affiliation(s)
- Bella E Brezovec
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Andrew B Berger
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Yukun A Hao
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Feng Chen
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Shaul Druckmann
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Thomas R Clandinin
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA.
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12
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Hamid A, Gattuso H, Caglar AN, Pillai M, Steele T, Gonzalez A, Nagel K, Syed MH. The conserved RNA-binding protein Imp is required for the specification and function of olfactory navigation circuitry in Drosophila. Curr Biol 2024; 34:473-488.e6. [PMID: 38181792 PMCID: PMC10872534 DOI: 10.1016/j.cub.2023.12.020] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 11/14/2023] [Accepted: 12/07/2023] [Indexed: 01/07/2024]
Abstract
Complex behaviors depend on the precise developmental specification of neuronal circuits, but the relationship between genetic programs for neural development, circuit structure, and behavioral output is often unclear. The central complex (CX) is a conserved sensory-motor integration center in insects, which governs many higher-order behaviors and largely derives from a small number of type II neural stem cells (NSCs). Here, we show that Imp, a conserved IGF-II mRNA-binding protein expressed in type II NSCs, plays a role in specifying essential components of CX olfactory navigation circuitry. We show the following: (1) that multiple components of olfactory navigation circuitry arise from type II NSCs. (2) Manipulating Imp expression in type II NSCs alters the number and morphology of many of these circuit elements, with the most potent effects on neurons targeting the ventral layers of the fan-shaped body (FB). (3) Imp regulates the specification of Tachykinin-expressing ventral FB input neurons. (4) Imp is required in type II NSCs for establishing proper morphology of the CX neuropil structures. (5) Loss of Imp in type II NSCs abolishes upwind orientation to attractive odor while leaving locomotion and odor-evoked regulation of movement intact. Taken together, our findings establish that a temporally expressed gene can regulate the expression of a complex behavior by developmentally regulating the specification of multiple circuit components and provides a first step toward a developmental dissection of the CX and its roles in behavior.
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Affiliation(s)
- Aisha Hamid
- Department of Biology, University of New Mexico, 219 Yale Blvd NE, Albuquerque, NM 87131, USA
| | - Hannah Gattuso
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Aysu Nora Caglar
- Department of Biology, University of New Mexico, 219 Yale Blvd NE, Albuquerque, NM 87131, USA
| | - Midhula Pillai
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Theresa Steele
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Alexa Gonzalez
- Department of Biology, University of New Mexico, 219 Yale Blvd NE, Albuquerque, NM 87131, USA
| | - Katherine Nagel
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA.
| | - Mubarak Hussain Syed
- Department of Biology, University of New Mexico, 219 Yale Blvd NE, Albuquerque, NM 87131, USA.
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13
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Dillon NR, Manning L, Hirono K, Doe CQ. Seven-up acts in neuroblasts to specify adult central complex neuron identity and initiate neuroblast decommissioning. Development 2024; 151:dev202504. [PMID: 38230563 PMCID: PMC10906098 DOI: 10.1242/dev.202504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 12/22/2023] [Indexed: 01/18/2024]
Abstract
An unanswered question in neurobiology is how are diverse neuron cell types generated from a small number of neural stem cells? In the Drosophila larval central brain, there are eight bilateral Type 2 neuroblast (T2NB) lineages that express a suite of early temporal factors followed by a different set of late temporal factors and generate the majority of the central complex (CX) neurons. The early-to-late switch is triggered by the orphan nuclear hormone receptor Seven-up (Svp), yet little is known about how this Svp-dependent switch is involved in specifying CX neuron identities. Here, we: (1) birth date the CX neurons P-EN and P-FN (early and late, respectively); (2) show that Svp is transiently expressed in all early T2NBs; and (3) show that loss of Svp expands the population of early born P-EN neurons at the expense of late born P-FN neurons. Furthermore, in the absence of Svp, T2NBs fail decommissioning and abnormally extend their lineage into week-old adults. We conclude that Svp is required to specify CX neuron identity, as well as to initiate T2NB decommissioning.
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Affiliation(s)
- Noah R. Dillon
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
| | - Laurina Manning
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
| | - Keiko Hirono
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
| | - Chris Q. Doe
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
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14
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Munroe JA, Doe CQ. Imp is expressed in INPs and newborn neurons where it regulates neuropil targeting in the central complex. Neural Dev 2023; 18:9. [PMID: 38031099 PMCID: PMC10685609 DOI: 10.1186/s13064-023-00177-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 11/06/2023] [Indexed: 12/01/2023] Open
Abstract
The generation of neuronal diversity remains incompletely understood. In Drosophila, the central brain is populated by neural stem cells derived from progenitors called neuroblasts (NBs). There are two types of NBs, type 1 and 2. T1NBs have a relatively simple lineage, whereas T2NBs expand and diversify the neural population with the generation of intermediate neural progenitors (INPs), contributing many neurons to the adult central complex, a brain region essential for navigation. However, it is not fully understood how neural diversity is created in T2NB and INP lineages. Imp, an RNA-binding protein, is expressed in T2NBs in a high-to-low temporal gradient, while the RNA-binding protein Syncrip forms an opposing gradient. It remains unknown if Imp expression is carried into INPs; whether it forms a gradient similar to NBs; and whether INP expression of Imp is required for generating neuronal identity or morphology. Here, we show that Imp/Syp are both present in INPs, but not always in opposing gradients. We find that newborn INPs adopt their Imp/Syp levels from their parental T2NBs; that Imp and Syp are expressed in stage-specific high-to-low gradients in INPs. In addition, there is a late INP pulse of Imp. We find that neurons born from old INPs (E-PG and PF-R neurons) have altered morphology following both Imp knock-down and Imp overexpression. We conclude that Imp functions in INPs and newborn neurons to determine proper neuronal morphology and central complex neuropil organization.
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Affiliation(s)
- Jordan A Munroe
- Institute of Neuroscience, Howard Hughes Medical Institute, Univ. of Oregon, Eugene, OR, 97403, USA
| | - Chris Q Doe
- Institute of Neuroscience, Howard Hughes Medical Institute, Univ. of Oregon, Eugene, OR, 97403, USA.
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15
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Dillon NR, Manning L, Hirono K, Doe CQ. Seven-up acts in neuroblasts to specify adult central complex neuron identity and initiate neuroblast decommissioning. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.02.565340. [PMID: 37961302 PMCID: PMC10635090 DOI: 10.1101/2023.11.02.565340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
An open question in neurobiology is how diverse neuron cell types are generated from a small number of neural stem cells. In the Drosophila larval central brain, there are eight bilateral Type 2 neuroblast (T2NB) lineages that express a suite of early temporal factors followed by a different set of late temporal factors and generate the majority of the central complex (CX) neurons. The early-to-late switch is triggered by the orphan nuclear hormone receptor Seven-up (Svp), yet little is known about this Svp-dependent switch in specifying CX neuron identities. Here, we (i) birthdate the CX neurons P-EN and P-FN (early and late, respectively); (ii) show that Svp is transiently expressed in all early T2NBs; and (iii) show that loss of Svp expands the population of early born P-EN neurons at the expense of late born P-FN neurons. Furthermore, in the absence of Svp, T2NBs fail decommissioning and abnormally extend their lineage into week-old adults. We conclude that Svp is required to specify CX neuron identity, as well as to initiate T2NB decommissioning.
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Affiliation(s)
- Noah R. Dillon
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403
| | - Laurina Manning
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403
| | - Keiko Hirono
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403
| | - Chris Q. Doe
- Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403
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16
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Randi F, Sharma AK, Dvali S, Leifer AM. Neural signal propagation atlas of Caenorhabditis elegans. Nature 2023; 623:406-414. [PMID: 37914938 PMCID: PMC10632145 DOI: 10.1038/s41586-023-06683-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 09/27/2023] [Indexed: 11/03/2023]
Abstract
Establishing how neural function emerges from network properties is a fundamental problem in neuroscience1. Here, to better understand the relationship between the structure and the function of a nervous system, we systematically measure signal propagation in 23,433 pairs of neurons across the head of the nematode Caenorhabditis elegans by direct optogenetic activation and simultaneous whole-brain calcium imaging. We measure the sign (excitatory or inhibitory), strength, temporal properties and causal direction of signal propagation between these neurons to create a functional atlas. We find that signal propagation differs from model predictions that are based on anatomy. Using mutants, we show that extrasynaptic signalling not visible from anatomy contributes to this difference. We identify many instances of dense-core-vesicle-dependent signalling, including on timescales of less than a second, that evoke acute calcium transients-often where no direct wired connection exists but where relevant neuropeptides and receptors are expressed. We propose that, in such cases, extrasynaptically released neuropeptides serve a similar function to that of classical neurotransmitters. Finally, our measured signal propagation atlas better predicts the neural dynamics of spontaneous activity than do models based on anatomy. We conclude that both synaptic and extrasynaptic signalling drive neural dynamics on short timescales, and that measurements of evoked signal propagation are crucial for interpreting neural function.
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Affiliation(s)
- Francesco Randi
- Department of Physics, Princeton University, Princeton, NJ, USA
- Regeneron Pharmaceuticals, Tarrytown, NY, USA
| | - Anuj K Sharma
- Department of Physics, Princeton University, Princeton, NJ, USA
| | - Sophie Dvali
- Department of Physics, Princeton University, Princeton, NJ, USA
| | - Andrew M Leifer
- Department of Physics, Princeton University, Princeton, NJ, USA.
- Princeton Neurosciences Institute, Princeton University, Princeton, NJ, USA.
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17
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Sharma AK, Randi F, Kumar S, Dvali S, Leifer AM. TWISP: A Transgenic Worm for Interrogating Signal Propagation in C. elegans. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.03.551820. [PMID: 37577580 PMCID: PMC10418184 DOI: 10.1101/2023.08.03.551820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
Abstract
Genetically encoded optical indicators and actuators of neural activity allow for all-optical investigations of signaling in the nervous system. But commonly used indicators, actuators and expression strategies are poorly suited for systematic measurements of signal propagation at brain scale and cellular resolution. Large scale measurements of the brain require indicators and actuators with compatible excitation spectra to avoid optical crosstalk. They must be highly expressed in every neuron but at the same time avoid lethality and permit the animal to reach adulthood. And finally, their expression must be compatible with additional fluorescent labels to locate and identify neurons, such as those in the NeuroPAL cell identification system. We present TWISP, a Transgenic Worm for Interrogating Signal Propagation, that address these needs and enables optical measurements of evoked calcium activity at brain scale and cellular resolution in the nervous system of the nematode Caenorhabditis elegans. We express in every neuron a non-conventional optical actuator, the gustatory receptor homolog GUR-3+PRDX-2 under the control of a drug-inducible system QF+hGR, and calcium indicator GCAMP6s, in a background with additional fluorophores of the NeuroPAL cell ID system. We show that this combination, but not others tested, avoids optical-crosstalk, creates strong expression in the adult, and generates stable transgenic lines for systematic measurements of signal propagation in the worm brain.
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Affiliation(s)
| | - Francesco Randi
- Department of Physics, Princeton University, Princeton, NJ, 08544
| | - Sandeep Kumar
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544
| | - Sophie Dvali
- Department of Physics, Princeton University, Princeton, NJ, 08544
| | - Andrew M Leifer
- Department of Physics, Princeton University, Princeton, NJ, 08544
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544
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18
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Wilson RI. Neural Networks for Navigation: From Connections to Computations. Annu Rev Neurosci 2023; 46:403-423. [PMID: 37428603 DOI: 10.1146/annurev-neuro-110920-032645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2023]
Abstract
Many animals can navigate toward a goal they cannot see based on an internal representation of that goal in the brain's spatial maps. These maps are organized around networks with stable fixed-point dynamics (attractors), anchored to landmarks, and reciprocally connected to motor control. This review summarizes recent progress in understanding these networks, focusing on studies in arthropods. One factor driving recent progress is the availability of the Drosophila connectome; however, it is increasingly clear that navigation depends on ongoing synaptic plasticity in these networks. Functional synapses appear to be continually reselected from the set of anatomical potential synapses based on the interaction of Hebbian learning rules, sensory feedback, attractor dynamics, and neuromodulation. This can explain how the brain's maps of space are rapidly updated; it may also explain how the brain can initialize goals as stable fixed points for navigation.
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Affiliation(s)
- Rachel I Wilson
- Department of Neurobiology, Harvard Medical School, Cambridge, Massachusetts, USA;
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19
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Kandimalla P, Omoto JJ, Hong EJ, Hartenstein V. Lineages to circuits: the developmental and evolutionary architecture of information channels into the central complex. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2023; 209:679-720. [PMID: 36932234 PMCID: PMC10354165 DOI: 10.1007/s00359-023-01616-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 01/27/2023] [Accepted: 01/28/2023] [Indexed: 03/19/2023]
Abstract
The representation and integration of internal and external cues is crucial for any organism to execute appropriate behaviors. In insects, a highly conserved region of the brain, the central complex (CX), functions in the representation of spatial information and behavioral states, as well as the transformation of this information into desired navigational commands. How does this relatively invariant structure enable the incorporation of information from the diversity of anatomical, behavioral, and ecological niches occupied by insects? Here, we examine the input channels to the CX in the context of their development and evolution. Insect brains develop from ~ 100 neuroblasts per hemisphere that divide systematically to form "lineages" of sister neurons, that project to their target neuropils along anatomically characteristic tracts. Overlaying this developmental tract information onto the recently generated Drosophila "hemibrain" connectome and integrating this information with the anatomical and physiological recording of neurons in other species, we observe neuropil and lineage-specific innervation, connectivity, and activity profiles in CX input channels. We posit that the proliferative potential of neuroblasts and the lineage-based architecture of information channels enable the modification of neural networks across existing, novel, and deprecated modalities in a species-specific manner, thus forming the substrate for the evolution and diversification of insect navigational circuits.
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Affiliation(s)
- Pratyush Kandimalla
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA.
| | - Jaison Jiro Omoto
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA
| | - Elizabeth J Hong
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
| | - Volker Hartenstein
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA
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20
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Hamid A, Gattuso H, Caglar AN, Pillai M, Steele T, Gonzalez A, Nagel K, Syed MH. The RNA-binding protein, Imp specifies olfactory navigation circuitry and behavior in Drosophila. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.26.542522. [PMID: 37398350 PMCID: PMC10312496 DOI: 10.1101/2023.05.26.542522] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
Complex behaviors depend on the precise developmental specification of neuronal circuits, but the relationship between genetic prograssms for neural development, circuit structure, and behavioral output is often unclear. The central complex (CX) is a conserved sensory-motor integration center in insects that governs many higher order behaviors and largely derives from a small number of Type II neural stem cells. Here, we show that Imp, a conserved IGF-II mRNA-binding protein expressed in Type II neural stem cells, specifies components of CX olfactory navigation circuitry. We show: (1) that multiple components of olfactory navigation circuitry arise from Type II neural stem cells and manipulating Imp expression in Type II neural stem cells alters the number and morphology of many of these circuit elements, with the most potent effects on neurons targeting the ventral layers of the fan-shaped body. (2) Imp regulates the specification of Tachykinin expressing ventral fan-shaped body input neurons. (3) Imp in Type II neural stem cells alters the morphology of the CX neuropil structures. (4) Loss of Imp in Type II neural stem cells abolishes upwind orientation to attractive odor while leaving locomotion and odor-evoked regulation of movement intact. Taken together, our work establishes that a single temporally expressed gene can regulate the expression of a complex behavior through the developmental specification of multiple circuit components and provides a first step towards a developmental dissection of the CX and its roles in behavior.
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Affiliation(s)
- Aisha Hamid
- Department of Biology, 219 Yale Blvd NE, University of New Mexico, Albuquerque, NM 87131, USA
| | - Hannah Gattuso
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Aysu Nora Caglar
- Current address: Biochemistry & Molecular Biology, 915 Camino De Salud NE, Albuquerque, NM 87132, USA
| | - Midhula Pillai
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Theresa Steele
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Alexa Gonzalez
- Department of Biology, 219 Yale Blvd NE, University of New Mexico, Albuquerque, NM 87131, USA
| | - Katherine Nagel
- Neuroscience Institute, NYU Medical Center, 435 E 30th St., New York, NY 10016, USA
| | - Mubarak Hussain Syed
- Department of Biology, 219 Yale Blvd NE, University of New Mexico, Albuquerque, NM 87131, USA
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21
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Currier TA, Pang MM, Clandinin TR. Visual processing in the fly, from photoreceptors to behavior. Genetics 2023; 224:iyad064. [PMID: 37128740 PMCID: PMC10213501 DOI: 10.1093/genetics/iyad064] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 03/22/2023] [Indexed: 05/03/2023] Open
Abstract
Originally a genetic model organism, the experimental use of Drosophila melanogaster has grown to include quantitative behavioral analyses, sophisticated perturbations of neuronal function, and detailed sensory physiology. A highlight of these developments can be seen in the context of vision, where pioneering studies have uncovered fundamental and generalizable principles of sensory processing. Here we begin with an overview of vision-guided behaviors and common methods for probing visual circuits. We then outline the anatomy and physiology of brain regions involved in visual processing, beginning at the sensory periphery and ending with descending motor control. Areas of focus include contrast and motion detection in the optic lobe, circuits for visual feature selectivity, computations in support of spatial navigation, and contextual associative learning. Finally, we look to the future of fly visual neuroscience and discuss promising topics for further study.
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Affiliation(s)
- Timothy A Currier
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Michelle M Pang
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Thomas R Clandinin
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA
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22
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Global inhibition in head-direction neural circuits: a systematic comparison between connectome-based spiking neural circuit models. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2023:10.1007/s00359-023-01615-z. [PMID: 36781446 DOI: 10.1007/s00359-023-01615-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 01/16/2023] [Accepted: 01/27/2023] [Indexed: 02/15/2023]
Abstract
The recent discovery of the head-direction (HD) system in fruit flies has provided unprecedented insights into the neural mechanisms of spatial orientation. Despite the progress, the neural substance of global inhibition, an essential component of the HD circuits, remains controversial. Some studies suggested that the ring neurons provide global inhibition, while others suggested the Δ7 neurons. In the present study, we provide evaluations from the theoretical perspective by performing systematic analyses on the computational models based on the ring-neuron (R models) and Δ7-neurons (Delta models) hypotheses with modifications according to the latest connectomic data. We conducted four tests: robustness, persistency, speed, and dynamical characteristics. We discovered that the two models led to a comparable performance in general, but each excelled in different tests. The R Models were more robust, while the Delta models were better in the persistency test. We also tested a hybrid model that combines both inhibitory mechanisms. While the performances of the R and Delta models in each test are highly parameter-dependent, the Hybrid model performed well in all tests with the same set of parameters. Our results suggest the possibility of combined inhibitory mechanisms in the HD circuits of fruit flies.
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23
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Yan W, Lin H, Yu J, Wiggin TD, Wu L, Meng Z, Liu C, Griffith LC. Subtype-Specific Roles of Ellipsoid Body Ring Neurons in Sleep Regulation in Drosophila. J Neurosci 2023; 43:764-786. [PMID: 36535771 PMCID: PMC9899086 DOI: 10.1523/jneurosci.1350-22.2022] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Revised: 09/22/2022] [Accepted: 10/26/2022] [Indexed: 12/23/2022] Open
Abstract
The ellipsoid body (EB) is a major structure of the central complex of the Drosophila melanogaster brain. Twenty-two subtypes of EB ring neurons have been identified based on anatomic and morphologic characteristics by light-level microscopy and EM connectomics. A few studies have associated ring neurons with the regulation of sleep homeostasis and structure. However, cell type-specific and population interactions in the regulation of sleep remain unclear. Using an unbiased thermogenetic screen of EB drivers using female flies, we found the following: (1) multiple ring neurons are involved in the modulation of amount of sleep and structure in a synergistic manner; (2) analysis of data for ΔP(doze)/ΔP(wake) using a mixed Gaussian model detected 5 clusters of GAL4 drivers which had similar effects on sleep pressure and/or depth: lines driving arousal contained R4m neurons, whereas lines that increased sleep pressure had R3m cells; (3) a GLM analysis correlating ring cell subtype and activity-dependent changes in sleep parameters across all lines identified several cell types significantly associated with specific sleep effects: R3p was daytime sleep-promoting, and R4m was nighttime wake-promoting; and (4) R3d cells present in 5HT7-GAL4 and in GAL4 lines, which exclusively affect sleep structure, were found to contribute to fragmentation of sleep during both day and night. Thus, multiple subtypes of ring neurons distinctively control sleep amount and/or structure. The unique highly interconnected structure of the EB suggests a local-network model worth future investigation; understanding EB subtype interactions may provide insight how sleep circuits in general are structured.SIGNIFICANCE STATEMENT How multiple brain regions, with many cell types, can coherently regulate sleep remains unclear, but identification of cell type-specific roles can generate opportunities for understanding the principles of integration and cooperation. The ellipsoid body (EB) of the fly brain exhibits a high level of connectivity and functional heterogeneity yet is able to tune multiple behaviors in real-time, including sleep. Leveraging the powerful genetic tools available in Drosophila and recent progress in the characterization of the morphology and connectivity of EB ring neurons, we identify several EB subtypes specifically associated with distinct aspects of sleep. Our findings will aid in revealing the rules of coding and integration in the brain.
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Affiliation(s)
- Wei Yan
- Brain Cognition and Brain Disease Institute, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 518000, China
| | - Hai Lin
- Central Research Institute, United Imaging Healthcare, Shanghai, 200032, China
| | - Junwei Yu
- Department of Biology, National Center for Behavioral Genomics and Volen Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453
| | - Timothy D Wiggin
- Department of Biology, National Center for Behavioral Genomics and Volen Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453
| | - Litao Wu
- Brain Cognition and Brain Disease Institute, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 518000, China
| | - Zhiqiang Meng
- Brain Cognition and Brain Disease Institute, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 518000, China
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen, 518000, China
- Shenzhen Key Laboratory of Drug Addiction, Shenzhen, 518000, China
| | - Chang Liu
- Brain Cognition and Brain Disease Institute, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 518000, China
- CAS Key Laboratory of Brain Connectome and Manipulation, Shenzhen, 518000, China
- Shenzhen Key Laboratory of Viral Vectors for Biomedicine, Shenzhen, 518000, China
| | - Leslie C Griffith
- Department of Biology, National Center for Behavioral Genomics and Volen Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453
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24
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The sky compass network in the brain of the desert locust. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2022:10.1007/s00359-022-01601-x. [PMID: 36550368 DOI: 10.1007/s00359-022-01601-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 11/24/2022] [Accepted: 12/06/2022] [Indexed: 12/24/2022]
Abstract
Many arthropods and vertebrates use celestial signals such as the position of the sun during the day or stars at night as compass cues for spatial orientation. The neural network underlying sky compass coding in the brain has been studied in great detail in the desert locust Schistocerca gregaria. These insects perform long-range migrations in Northern Africa and the Middle East following seasonal changes in rainfall. Highly specialized photoreceptors in a dorsal rim area of their compound eyes are sensitive to the polarization of the sky, generated by scattered sunlight. These signals are combined with direct information on the sun position in the optic lobe and anterior optic tubercle and converge from both eyes in a midline crossing brain structure, the central complex. Here, head direction coding is achieved by a compass-like arrangement of columns signaling solar azimuth through a 360° range of space by combining direct brightness cues from the sun with polarization cues matching the polarization pattern of the sky. Other directional cues derived from wind direction and internal self-rotation input are likely integrated. Signals are transmitted as coherent steering commands to descending neurons for directional control of locomotion and flight.
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25
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Vafidis P, Owald D, D'Albis T, Kempter R. Learning accurate path integration in ring attractor models of the head direction system. eLife 2022; 11:e69841. [PMID: 35723252 PMCID: PMC9286743 DOI: 10.7554/elife.69841] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 06/17/2022] [Indexed: 11/13/2022] Open
Abstract
Ring attractor models for angular path integration have received strong experimental support. To function as integrators, head direction circuits require precisely tuned connectivity, but it is currently unknown how such tuning could be achieved. Here, we propose a network model in which a local, biologically plausible learning rule adjusts synaptic efficacies during development, guided by supervisory allothetic cues. Applied to the Drosophila head direction system, the model learns to path-integrate accurately and develops a connectivity strikingly similar to the one reported in experiments. The mature network is a quasi-continuous attractor and reproduces key experiments in which optogenetic stimulation controls the internal representation of heading in flies, and where the network remaps to integrate with different gains in rodents. Our model predicts that path integration requires self-supervised learning during a developmental phase, and proposes a general framework to learn to path-integrate with gain-1 even in architectures that lack the physical topography of a ring.
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Affiliation(s)
- Pantelis Vafidis
- Computation and Neural Systems, California Institute of TechnologyPasadenaUnited States
- Bernstein Center for Computational NeuroscienceBerlinGermany
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu BerlinBerlinGermany
| | - David Owald
- Institute of Neurophysiology, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, and Berlin Institute of HealthBerlinGermany
- NeuroCure, Charité - Universitätsmedizin BerlinBerlinGermany
- Einstein Center for NeurosciencesBerlinGermany
| | - Tiziano D'Albis
- Bernstein Center for Computational NeuroscienceBerlinGermany
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu BerlinBerlinGermany
| | - Richard Kempter
- Bernstein Center for Computational NeuroscienceBerlinGermany
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu BerlinBerlinGermany
- Einstein Center for NeurosciencesBerlinGermany
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26
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Hensgen R, Dippel S, Hümmert S, Jahn S, Seyfarth J, Homberg U. Myoinhibitory peptides in the central complex of the locust Schistocerca gregaria and colocalization with locustatachykinin-related peptides. J Comp Neurol 2022; 530:2782-2801. [PMID: 35700405 DOI: 10.1002/cne.25374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 05/13/2022] [Accepted: 05/16/2022] [Indexed: 11/10/2022]
Abstract
The central complex in the brain of insects provides a neural network for sensorimotor processing that is essential for spatial navigation and locomotion and plays a role in sleep control. Studies on the neurochemical architecture of the central complex have been performed especially in the fruit fly Drosophila melangoaster and the desert locust, Schistocerca gregaria. In several insect species, myoinhibitory peptides (MIPs) are involved in circadian control and sleep-wake regulation. To identify neurons that might underlie these functions, we investigated the distribution of MIPs in the central complex of the locust. In silico transcript analysis suggests the presence of eight different MIPs in the desert locust. Through immunolabeling, we identified five systems of central-complex neurons that express MIP-like peptides. Two systems constitute columnar neurons of the protocerebral bridge and the lower division of the central body, while the other three systems are columnar neurons (two systems) and tangential neurons (one system) of the upper division of the central body. The innervation pattern and cell count of two systems of columnar neurons revealed the existence of 18 instead of 16 columns of the protocerebral bridge. Immunostaining of preparations containing intracellularly stained single cells allowed us to further specify subtypes of labeled columnar neurons. Double-label experiments showed that three systems of MIP-immunostained columnar neurons are also locustatachykinin-immunoreactive. No colocalization was found with serotonin immunostaining. The data provide novel insights into the architecture of the locust central complex and suggest that MIPs play a prominent role within the central-complex network.
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Affiliation(s)
- Ronja Hensgen
- Department of Biology, Animal Physiology, Philipps-Universität Marburg, Marburg, Germany
| | - Stefan Dippel
- Department of Biology, Zoology, and Developmental Biology, Justus Liebig University of Giessen, Gießen, Germany
| | - Sophie Hümmert
- Department of Biology, Animal Physiology, Philipps-Universität Marburg, Marburg, Germany
| | - Stefanie Jahn
- Department of Biology, Animal Physiology, Philipps-Universität Marburg, Marburg, Germany
| | - Jutta Seyfarth
- Department of Biology, Animal Physiology, Philipps-Universität Marburg, Marburg, Germany
| | - Uwe Homberg
- Department of Biology, Animal Physiology, Philipps-Universität Marburg, Marburg, Germany.,Center for Mind, Brain, and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
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Ryu L, Kim SY, Kim AJ. From Photons to Behaviors: Neural Implementations of Visual Behaviors in Drosophila. Front Neurosci 2022; 16:883640. [PMID: 35600623 PMCID: PMC9115102 DOI: 10.3389/fnins.2022.883640] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 03/28/2022] [Indexed: 11/17/2022] Open
Abstract
Neural implementations of visual behaviors in Drosophila have been dissected intensively in the past couple of decades. The availability of premiere genetic toolkits, behavioral assays in tethered or freely moving conditions, and advances in connectomics have permitted the understanding of the physiological and anatomical details of the nervous system underlying complex visual behaviors. In this review, we describe recent advances on how various features of a visual scene are detected by the Drosophila visual system and how the neural circuits process these signals and elicit an appropriate behavioral response. Special emphasis was laid on the neural circuits that detect visual features such as brightness, color, local motion, optic flow, and translating or approaching visual objects, which would be important for behaviors such as phototaxis, optomotor response, attraction (or aversion) to moving objects, navigation, and visual learning. This review offers an integrative framework for how the fly brain detects visual features and orchestrates an appropriate behavioral response.
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Affiliation(s)
- Leesun Ryu
- Department of Electronic Engineering, Hanyang University, Seoul, South Korea
| | - Sung Yong Kim
- Department of Electronic Engineering, Hanyang University, Seoul, South Korea
| | - Anmo J. Kim
- Department of Electronic Engineering, Hanyang University, Seoul, South Korea
- Department of Biomedical Engineering, Hanyang University, Seoul, South Korea
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28
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Frighetto G, Zordan MA, Castiello U, Megighian A, Martin JR. Dopamine Modulation of Drosophila Ellipsoid Body Neurons, a Nod to the Mammalian Basal Ganglia. Front Physiol 2022; 13:849142. [PMID: 35492587 PMCID: PMC9048027 DOI: 10.3389/fphys.2022.849142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Accepted: 03/10/2022] [Indexed: 12/04/2022] Open
Abstract
The central complex (CX) is a neural structure located on the midline of the insect brain that has been widely studied in the last few years. Its role in navigation and goal-oriented behaviors resembles those played by the basal ganglia in mammals. However, the neural mechanisms and the neurotransmitters involved in these processes remain unclear. Here, we exploited an in vivo bioluminescence Ca2+ imaging technique to record the activity in targeted neurons of the ellipsoid body (EB). We used different drugs to evoke excitatory Ca2+-responses, depending on the putative neurotransmitter released by their presynaptic inputs, while concomitant dopamine administration was employed to modulate those excitations. By using a genetic approach to knockdown the dopamine 1-like receptors, we showed that different dopamine modulatory effects are likely due to specific receptors expressed by the targeted population of neurons. Altogether, these results provide new data concerning how dopamine modulates and shapes the response of the ellipsoid body neurons. Moreover, they provide important insights regarding the similitude with mammals as far as the role played by dopamine in increasing and stabilizing the response of goal-related information.
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Affiliation(s)
- Giovanni Frighetto
- Department of General Psychology, University of Padova, Padova, Italy
- Institut des Neurosciences Paris-Saclay, Université Paris-Saclay, CNRS, Saclay, France
| | - Mauro A. Zordan
- Department of Biology, University of Padova, Padova, Italy
- Padova Neuroscience Center, University of Padova, Padova, Italy
| | - Umberto Castiello
- Department of General Psychology, University of Padova, Padova, Italy
| | - Aram Megighian
- Padova Neuroscience Center, University of Padova, Padova, Italy
- Department of Biomedical Sciences, University of Padova, Padova, Italy
| | - Jean-René Martin
- Institut des Neurosciences Paris-Saclay, Université Paris-Saclay, CNRS, Saclay, France
- *Correspondence: Jean-René Martin,
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Grover D, Chen JY, Xie J, Li J, Changeux JP, Greenspan RJ. Differential mechanisms underlie trace and delay conditioning in Drosophila. Nature 2022; 603:302-308. [PMID: 35173333 DOI: 10.1038/s41586-022-04433-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 01/13/2022] [Indexed: 12/17/2022]
Abstract
Two forms of associative learning-delay conditioning and trace conditioning-have been widely investigated in humans and higher-order mammals1. In delay conditioning, an unconditioned stimulus (for example, an electric shock) is introduced in the final moments of a conditioned stimulus (for example, a tone), with both ending at the same time. In trace conditioning, a 'trace' interval separates the conditioned stimulus and the unconditioned stimulus. Trace conditioning therefore relies on maintaining a neural representation of the conditioned stimulus after its termination (hence making distraction possible2), to learn the conditioned stimulus-unconditioned stimulus contingency3; this makes it more cognitively demanding than delay conditioning4. Here, by combining virtual-reality behaviour with neurogenetic manipulations and in vivo two-photon brain imaging, we show that visual trace conditioning and delay conditioning in Drosophila mobilize R2 and R4m ring neurons in the ellipsoid body. In trace conditioning, calcium transients during the trace interval show increased oscillations and slower declines over repeated training, and both of these effects are sensitive to distractions. Dopaminergic activity accompanies signal persistence in ring neurons, and this is decreased by distractions solely during trace conditioning. Finally, dopamine D1-like and D2-like receptor signalling in ring neurons have different roles in delay and trace conditioning; dopamine D1-like receptor 1 mediates both forms of conditioning, whereas the dopamine D2-like receptor is involved exclusively in sustaining ring neuron activity during the trace interval of trace conditioning. These observations are similar to those previously reported in mammals during arousal5, prefrontal activation6 and high-level cognitive learning7,8.
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Affiliation(s)
- Dhruv Grover
- Kavli Institute for Brain and Mind, University of California, San Diego, La Jolla, CA, USA
| | - Jen-Yung Chen
- Kavli Institute for Brain and Mind, University of California, San Diego, La Jolla, CA, USA
| | - Jiayun Xie
- Kavli Institute for Brain and Mind, University of California, San Diego, La Jolla, CA, USA
| | - Jinfang Li
- Kavli Institute for Brain and Mind, University of California, San Diego, La Jolla, CA, USA
| | - Jean-Pierre Changeux
- Kavli Institute for Brain and Mind, University of California, San Diego, La Jolla, CA, USA.,CNRS UMR 3571, Institut Pasteur, Paris, France.,College de France, Paris, France
| | - Ralph J Greenspan
- Kavli Institute for Brain and Mind, University of California, San Diego, La Jolla, CA, USA. .,Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
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Sun X, Yue S, Mangan M. How the insect central complex could coordinate multimodal navigation. eLife 2021; 10:e73077. [PMID: 34882094 PMCID: PMC8741217 DOI: 10.7554/elife.73077] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 12/08/2021] [Indexed: 11/13/2022] Open
Abstract
The central complex of the insect midbrain is thought to coordinate insect guidance strategies. Computational models can account for specific behaviours, but their applicability across sensory and task domains remains untested. Here, we assess the capacity of our previous model (Sun et al. 2020) of visual navigation to generalise to olfactory navigation and its coordination with other guidance in flies and ants. We show that fundamental to this capacity is the use of a biologically plausible neural copy-and-shift mechanism that ensures sensory information is presented in a format compatible with the insect steering circuit regardless of its source. Moreover, the same mechanism is shown to allow the transfer cues from unstable/egocentric to stable/geocentric frames of reference, providing a first account of the mechanism by which foraging insects robustly recover from environmental disturbances. We propose that these circuits can be flexibly repurposed by different insect navigators to address their unique ecological needs.
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Affiliation(s)
- Xuelong Sun
- Machine Life and Intelligence Research Centre, School of Mathematics and Information Science, Guangzhou UniversityGuangzhouChina
- Computational Intelligence Lab and L-CAS, School of Computer Science, University of LincolnLincolnUnited Kingdom
| | - Shigang Yue
- Machine Life and Intelligence Research Centre, School of Mathematics and Information Science, Guangzhou UniversityGuangzhouChina
- Computational Intelligence Lab and L-CAS, School of Computer Science, University of LincolnLincolnUnited Kingdom
| | - Michael Mangan
- Sheffield Robotics, Department of Computer Science, University of SheffieldSheffieldUnited Kingdom
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31
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Mechanosensory Stimulation via Nanchung Expressing Neurons Can Induce Daytime Sleep in Drosophila. J Neurosci 2021; 41:9403-9418. [PMID: 34635540 DOI: 10.1523/jneurosci.0400-21.2021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 08/31/2021] [Accepted: 09/02/2021] [Indexed: 11/21/2022] Open
Abstract
The neuronal and genetic bases of sleep, a phenomenon considered crucial for well-being of organisms, has been under investigation using the model organism Drosophila melanogaster Although sleep is a state where sensory threshold for arousal is greater, it is known that certain kinds of repetitive sensory stimuli, such as rocking, can indeed promote sleep in humans. Here we report that orbital motion-aided mechanosensory stimulation promotes sleep of male and female Drosophila, independent of the circadian clock, but controlled by the homeostatic system. Mechanosensory receptor nanchung (Nan)-expressing neurons in the chordotonal organs mediate this sleep induction: flies in which these neurons are either silenced or ablated display significantly reduced sleep induction on mechanosensory stimulation. Transient activation of the Nan-expressing neurons also enhances sleep levels, confirming the role of these neurons in sleep induction. We also reveal that certain regions of the antennal mechanosensory and motor center in the brain are involved in conveying information from the mechanosensory structures to the sleep centers. Thus, we show, for the first time, that a circadian clock-independent pathway originating from peripherally distributed mechanosensors can promote daytime sleep of flies Drosophila melanogaster SIGNIFICANCE STATEMENT Our tendency to fall asleep in moving vehicles or the practice of rocking infants to sleep suggests that slow rhythmic movement can induce sleep, although we do not understand the mechanistic basis of this phenomenon. We find that gentle orbital motion can induce behavioral quiescence even in flies, a highly genetically tractable system for sleep studies. We demonstrate that this is indeed true sleep based on its rapid reversibility by sensory stimulation, enhanced arousal threshold, and homeostatic control. Furthermore, we demonstrate that mechanosensory neurons expressing a TRPV channel nanchung, located in the antennae and chordotonal organs, mediate orbital motion-induced sleep by communicating with antennal mechanosensory motor centers, which in turn may project to sleep centers in the brain.
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Tomita J, Ban G, Kato YS, Kume K. Protocerebral Bridge Neurons That Regulate Sleep in Drosophila melanogaster. Front Neurosci 2021; 15:647117. [PMID: 34720844 PMCID: PMC8554056 DOI: 10.3389/fnins.2021.647117] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Accepted: 09/23/2021] [Indexed: 11/13/2022] Open
Abstract
The central complex is one of the major brain regions that control sleep in Drosophila. However, the circuitry details of sleep regulation have not been elucidated yet. Here, we show a novel sleep-regulating neuronal circuit in the protocerebral bridge (PB) of the central complex. Activation of the PB interneurons labeled by the R59E08-Gal4 and the PB columnar neurons with R52B10-Gal4 promoted sleep and wakefulness, respectively. A targeted GFP reconstitution across synaptic partners (t-GRASP) analysis demonstrated synaptic contact between these two groups of sleep-regulating PB neurons. Furthermore, we found that activation of a pair of dopaminergic (DA) neurons projecting to the PB (T1 DA neurons) decreased sleep. The wake-promoting T1 DA neurons and the sleep-promoting PB interneurons formed close associations. Dopamine 2-like receptor (Dop2R) knockdown in the sleep-promoting PB interneurons increased sleep. These results indicated that the neuronal circuit in the PB, regulated by dopamine signaling, mediates sleep-wakefulness.
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Affiliation(s)
- Jun Tomita
- Department of Neuropharmacology, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan
| | - Gosuke Ban
- Department of Neuropharmacology, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan
| | - Yoshiaki S Kato
- Department of Neuropharmacology, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan
| | - Kazuhiko Kume
- Department of Neuropharmacology, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan
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33
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Hulse BK, Haberkern H, Franconville R, Turner-Evans D, Takemura SY, Wolff T, Noorman M, Dreher M, Dan C, Parekh R, Hermundstad AM, Rubin GM, Jayaraman V. A connectome of the Drosophila central complex reveals network motifs suitable for flexible navigation and context-dependent action selection. eLife 2021; 10:e66039. [PMID: 34696823 PMCID: PMC9477501 DOI: 10.7554/elife.66039] [Citation(s) in RCA: 160] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 09/07/2021] [Indexed: 11/13/2022] Open
Abstract
Flexible behaviors over long timescales are thought to engage recurrent neural networks in deep brain regions, which are experimentally challenging to study. In insects, recurrent circuit dynamics in a brain region called the central complex (CX) enable directed locomotion, sleep, and context- and experience-dependent spatial navigation. We describe the first complete electron microscopy-based connectome of the Drosophila CX, including all its neurons and circuits at synaptic resolution. We identified new CX neuron types, novel sensory and motor pathways, and network motifs that likely enable the CX to extract the fly's head direction, maintain it with attractor dynamics, and combine it with other sensorimotor information to perform vector-based navigational computations. We also identified numerous pathways that may facilitate the selection of CX-driven behavioral patterns by context and internal state. The CX connectome provides a comprehensive blueprint necessary for a detailed understanding of network dynamics underlying sleep, flexible navigation, and state-dependent action selection.
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Affiliation(s)
- Brad K Hulse
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Hannah Haberkern
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Romain Franconville
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Daniel Turner-Evans
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Shin-ya Takemura
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Tanya Wolff
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Marcella Noorman
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Marisa Dreher
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Chuntao Dan
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Ruchi Parekh
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Ann M Hermundstad
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Gerald M Rubin
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Vivek Jayaraman
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
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34
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Behbahani AH, Palmer EH, Corfas RA, Dickinson MH. Drosophila re-zero their path integrator at the center of a fictive food patch. Curr Biol 2021; 31:4534-4546.e5. [PMID: 34450090 PMCID: PMC8551043 DOI: 10.1016/j.cub.2021.08.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 07/12/2021] [Accepted: 08/02/2021] [Indexed: 11/17/2022]
Abstract
The ability to keep track of one's location in space is a critical behavior for animals navigating to and from a salient location, and its computational basis is now beginning to be unraveled. Here, we tracked flies in a ring-shaped channel as they executed bouts of search triggered by optogenetic activation of sugar receptors. Unlike experiments in open field arenas, which produce highly tortuous search trajectories, our geometrically constrained paradigm enabled us to monitor flies' decisions to move toward or away from the fictive food. Our results suggest that flies use path integration to remember the location of a food site even after it has disappeared, and flies can remember the location of a former food site even after walking around the arena one or more times. To determine the behavioral algorithms underlying Drosophila search, we developed multiple state transition models and found that flies likely accomplish path integration by combining odometry and compass navigation to keep track of their position relative to the fictive food. Our results indicate that whereas flies re-zero their path integrator at food when only one feeding site is present, they adjust their path integrator to a central location between sites when experiencing food at two or more locations. Together, this work provides a simple experimental paradigm and theoretical framework to advance investigations of the neural basis of path integration.
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Affiliation(s)
- Amir H Behbahani
- Division of Biology and Bioengineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Emily H Palmer
- Division of Biology and Bioengineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Román A Corfas
- Division of Biology and Bioengineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Michael H Dickinson
- Division of Biology and Bioengineering, California Institute of Technology, Pasadena, CA 91125, USA.
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35
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Chen C, Agrawal S, Mark B, Mamiya A, Sustar A, Phelps JS, Lee WCA, Dickson BJ, Card GM, Tuthill JC. Functional architecture of neural circuits for leg proprioception in Drosophila. Curr Biol 2021; 31:5163-5175.e7. [PMID: 34637749 PMCID: PMC8665017 DOI: 10.1016/j.cub.2021.09.035] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 08/30/2021] [Accepted: 09/15/2021] [Indexed: 11/30/2022]
Abstract
To effectively control their bodies, animals rely on feedback from proprioceptive mechanosensory neurons. In the Drosophila leg, different proprioceptor subtypes monitor joint position, movement direction, and vibration. Here, we investigate how these diverse sensory signals are integrated by central proprioceptive circuits. We find that signals for leg joint position and directional movement converge in second-order neurons, revealing pathways for local feedback control of leg posture. Distinct populations of second-order neurons integrate tibia vibration signals across pairs of legs, suggesting a role in detecting external substrate vibration. In each pathway, the flow of sensory information is dynamically gated and sculpted by inhibition. Overall, our results reveal parallel pathways for processing of internal and external mechanosensory signals, which we propose mediate feedback control of leg movement and vibration sensing, respectively. The existence of a functional connectivity map also provides a resource for interpreting connectomic reconstruction of neural circuits for leg proprioception. To understand how diverse proprioceptive signals from the Drosophila leg are integrated by downstream circuits, Chen et al. use optogenetics and calcium imaging to map functional connectivity between sensory and central neurons. This work identifies parallel neural pathways for processing leg vibration vs. joint position and movement.
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Affiliation(s)
- Chenghao Chen
- Department of Physiology and Biophysics, University of Washington, 1705 N.E. Pacific Street, Seattle, WA 98195, USA; Janelia Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA 20147, USA
| | - Sweta Agrawal
- Department of Physiology and Biophysics, University of Washington, 1705 N.E. Pacific Street, Seattle, WA 98195, USA
| | - Brandon Mark
- Department of Physiology and Biophysics, University of Washington, 1705 N.E. Pacific Street, Seattle, WA 98195, USA
| | - Akira Mamiya
- Department of Physiology and Biophysics, University of Washington, 1705 N.E. Pacific Street, Seattle, WA 98195, USA
| | - Anne Sustar
- Department of Physiology and Biophysics, University of Washington, 1705 N.E. Pacific Street, Seattle, WA 98195, USA
| | - Jasper S Phelps
- Department of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA
| | - Wei-Chung Allen Lee
- Department of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA
| | - Barry J Dickson
- Janelia Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA 20147, USA
| | - Gwyneth M Card
- Janelia Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA 20147, USA
| | - John C Tuthill
- Department of Physiology and Biophysics, University of Washington, 1705 N.E. Pacific Street, Seattle, WA 98195, USA.
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36
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Plasticity between visual input pathways and the head direction system. Curr Opin Neurobiol 2021; 71:60-68. [PMID: 34619578 DOI: 10.1016/j.conb.2021.08.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Accepted: 08/26/2021] [Indexed: 11/21/2022]
Abstract
Animals can maintain a stable sense of direction even when they navigate in novel environments, but how the animal's brain interprets and encodes unfamiliar sensory information in its navigation system to maintain a stable sense of direction is a mystery. Recent studies have suggested that distinct brain structures of mammals and insects have evolved to solve this common problem with strategies that share computational principles; specifically, a network structure called a ring attractor maintains the sense of direction. Initially, in a novel environment, the animal's sense of direction relies on self-motion cues. Over time, the mapping from visual inputs to head direction cells, responsible for the sense of direction, is established via experience-dependent plasticity. Yet the mechanisms that facilitate acquiring a world-centered sense of direction, how many environments can be stored in memory, and what visual features are selected, all remain unknown. Thanks to recent advances in large scale physiological recording, genetic tools, and theory, these mechanisms may soon be revealed.
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37
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Garcia-Perez NC, Bucher G, Buescher M. Shaking hands is a homeodomain transcription factor that controls axon outgrowth of central complex neurons in the insect model Tribolium. Development 2021; 148:272435. [PMID: 34415334 PMCID: PMC8543150 DOI: 10.1242/dev.199368] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 08/09/2021] [Indexed: 01/22/2023]
Abstract
Gene regulatory mechanisms that specify subtype identity of central complex (CX) neurons are the subject of intense investigation. The CX is a compartment within the brain common to all insect species and functions as a ‘command center’ that directs motor actions. It is made up of several thousand neurons, with more than 60 morphologically distinct identities. Accordingly, transcriptional programs must effect the specification of at least as many neuronal subtypes. We demonstrate a role for the transcription factor Shaking hands (Skh) in the specification of embryonic CX neurons in Tribolium. The developmental dynamics of skh expression are characteristic of terminal selectors of subtype identity. In the embryonic brain, skh expression is restricted to a subset of neurons, many of which survive to adulthood and contribute to the mature CX. skh expression is maintained throughout the lifetime in at least some CX neurons. skh knockdown results in axon outgrowth defects, thus preventing the formation of an embryonic CX primordium. The previously unstudied Drosophila skh shows a similar embryonic expression pattern, suggesting that subtype specification of CX neurons may be conserved. Summary: A detailed examination of the developmental expression of the homeodomain transcription factor Shaking hands in Tribolium reveals a role in the formation of the central complex primordium.
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Affiliation(s)
- Natalia Carolina Garcia-Perez
- Johann Friedrich Blumenbach Institute of Zoology, GZMB, Department of Evolutionary Developmental Genetics, University of Goettingen, Justus-von-Liebig Weg 11, 37077 Goettingen, Germany
| | - Gregor Bucher
- Johann Friedrich Blumenbach Institute of Zoology, GZMB, Department of Evolutionary Developmental Genetics, University of Goettingen, Justus-von-Liebig Weg 11, 37077 Goettingen, Germany
| | - Marita Buescher
- Johann Friedrich Blumenbach Institute of Zoology, GZMB, Department of Evolutionary Developmental Genetics, University of Goettingen, Justus-von-Liebig Weg 11, 37077 Goettingen, Germany
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38
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Goulard R, Buehlmann C, Niven JE, Graham P, Webb B. A unified mechanism for innate and learned visual landmark guidance in the insect central complex. PLoS Comput Biol 2021; 17:e1009383. [PMID: 34555013 PMCID: PMC8491911 DOI: 10.1371/journal.pcbi.1009383] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 10/05/2021] [Accepted: 08/26/2021] [Indexed: 11/24/2022] Open
Abstract
Insects can navigate efficiently in both novel and familiar environments, and this requires flexiblity in how they are guided by sensory cues. A prominent landmark, for example, can elicit strong innate behaviours (attraction or menotaxis) but can also be used, after learning, as a specific directional cue as part of a navigation memory. However, the mechanisms that allow both pathways to co-exist, interact or override each other are largely unknown. Here we propose a model for the behavioural integration of innate and learned guidance based on the neuroanatomy of the central complex (CX), adapted to control landmark guided behaviours. We consider a reward signal provided either by an innate attraction to landmarks or a long-term visual memory in the mushroom bodies (MB) that modulates the formation of a local vector memory in the CX. Using an operant strategy for a simulated agent exploring a simple world containing a single visual cue, we show how the generated short-term memory can support both innate and learned steering behaviour. In addition, we show how this architecture is consistent with the observed effects of unilateral MB lesions in ants that cause a reversion to innate behaviour. We suggest the formation of a directional memory in the CX can be interpreted as transforming rewarding (positive or negative) sensory signals into a mapping of the environment that describes the geometrical attractiveness (or repulsion). We discuss how this scheme might represent an ideal way to combine multisensory information gathered during the exploration of an environment and support optimal cue integration.
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Affiliation(s)
- Roman Goulard
- Institute for Perception, Action, and Behaviour, School of Informatics, University of Edinburgh, Edinburgh, Scotland, United Kingdom
| | - Cornelia Buehlmann
- School of Life Sciences, University of Sussex, John Maynard Smith Building, Falmer, Brighton, United Kingdom
| | - Jeremy E. Niven
- School of Life Sciences, University of Sussex, John Maynard Smith Building, Falmer, Brighton, United Kingdom
| | - Paul Graham
- School of Life Sciences, University of Sussex, John Maynard Smith Building, Falmer, Brighton, United Kingdom
| | - Barbara Webb
- Institute for Perception, Action, and Behaviour, School of Informatics, University of Edinburgh, Edinburgh, Scotland, United Kingdom
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39
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Flores-Valle A, Gonçalves PJ, Seelig JD. Integration of sleep homeostasis and navigation in Drosophila. PLoS Comput Biol 2021; 17:e1009088. [PMID: 34252086 PMCID: PMC8297946 DOI: 10.1371/journal.pcbi.1009088] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 07/22/2021] [Accepted: 05/17/2021] [Indexed: 11/25/2022] Open
Abstract
During sleep, the brain undergoes dynamic and structural changes. In Drosophila, such changes have been observed in the central complex, a brain area important for sleep control and navigation. The connectivity of the central complex raises the question about how navigation, and specifically the head direction system, can operate in the face of sleep related plasticity. To address this question, we develop a model that integrates sleep homeostasis and head direction. We show that by introducing plasticity, the head direction system can function in a stable way by balancing plasticity in connected circuits that encode sleep pressure. With increasing sleep pressure, the head direction system nevertheless becomes unstable and a sleep phase with a different plasticity mechanism is introduced to reset network connectivity. The proposed integration of sleep homeostasis and head direction circuits captures features of their neural dynamics observed in flies and mice.
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Affiliation(s)
- Andres Flores-Valle
- Center of Advanced European Studies and Research (caesar), Bonn, Germany
- International Max Planck Research School for Brain and Behavior, Bonn, Germany
| | - Pedro J. Gonçalves
- Max Planck Research Group Neural Systems Analysis, Center of Advanced European Studies and Research (caesar), Bonn, Germany
- Computational Neuroengineering, Department of Electrical and Computer Engineering, Technical University of Munich, Munich, Germany
| | - Johannes D. Seelig
- Center of Advanced European Studies and Research (caesar), Bonn, Germany
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40
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Hardcastle BJ, Omoto JJ, Kandimalla P, Nguyen BCM, Keleş MF, Boyd NK, Hartenstein V, Frye MA. A visual pathway for skylight polarization processing in Drosophila. eLife 2021; 10:e63225. [PMID: 33755020 PMCID: PMC8051946 DOI: 10.7554/elife.63225] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 03/08/2021] [Indexed: 11/13/2022] Open
Abstract
Many insects use patterns of polarized light in the sky to orient and navigate. Here, we functionally characterize neural circuitry in the fruit fly, Drosophila melanogaster, that conveys polarized light signals from the eye to the central complex, a brain region essential for the fly's sense of direction. Neurons tuned to the angle of polarization of ultraviolet light are found throughout the anterior visual pathway, connecting the optic lobes with the central complex via the anterior optic tubercle and bulb, in a homologous organization to the 'sky compass' pathways described in other insects. We detail how a consistent, map-like organization of neural tunings in the peripheral visual system is transformed into a reduced representation suited to flexible processing in the central brain. This study identifies computational motifs of the transformation, enabling mechanistic comparisons of multisensory integration and central processing for navigation in the brains of insects.
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Affiliation(s)
- Ben J Hardcastle
- Department of Integrative Biology and Physiology, University of California, Los AngelesLos AngelesUnited States
| | - Jaison J Omoto
- Department of Molecular, Cell and Developmental Biology, University of California, Los AngelesLos AngelesUnited States
| | - Pratyush Kandimalla
- Department of Molecular, Cell and Developmental Biology, University of California, Los AngelesLos AngelesUnited States
| | - Bao-Chau M Nguyen
- Department of Molecular, Cell and Developmental Biology, University of California, Los AngelesLos AngelesUnited States
| | - Mehmet F Keleş
- Department of Integrative Biology and Physiology, University of California, Los AngelesLos AngelesUnited States
| | - Natalie K Boyd
- Department of Molecular, Cell and Developmental Biology, University of California, Los AngelesLos AngelesUnited States
| | - Volker Hartenstein
- Department of Molecular, Cell and Developmental Biology, University of California, Los AngelesLos AngelesUnited States
| | - Mark A Frye
- Department of Integrative Biology and Physiology, University of California, Los AngelesLos AngelesUnited States
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41
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Scaplen KM, Talay M, Fisher JD, Cohn R, Sorkaç A, Aso Y, Barnea G, Kaun KR. Transsynaptic mapping of Drosophila mushroom body output neurons. eLife 2021; 10:e63379. [PMID: 33570489 PMCID: PMC7877909 DOI: 10.7554/elife.63379] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 01/26/2021] [Indexed: 11/13/2022] Open
Abstract
The mushroom body (MB) is a well-characterized associative memory structure within the Drosophila brain. Analyzing MB connectivity using multiple approaches is critical for understanding the functional implications of this structure. Using the genetic anterograde transsynaptic tracing tool, trans-Tango, we identified divergent projections across the brain and convergent downstream targets of the MB output neurons (MBONs). Our analysis revealed at least three separate targets that receive convergent input from MBONs: other MBONs, the fan-shaped body (FSB), and the lateral accessory lobe (LAL). We describe, both anatomically and functionally, a multilayer circuit in which inhibitory and excitatory MBONs converge on the same genetic subset of FSB and LAL neurons. This circuit architecture enables the brain to update and integrate information with previous experience before executing appropriate behavioral responses. Our use of trans-Tango provides a genetically accessible anatomical framework for investigating the functional relevance of components within these complex and interconnected circuits.
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Affiliation(s)
- Kristin M Scaplen
- Department of Neuroscience, Brown UniversityProvidenceUnited States
- Department of Psychology, Bryant UniversitySmithfieldUnited States
- Center for Health and Behavioral Sciences, Bryant UniversitySmithfieldUnited States
| | - Mustafa Talay
- Department of Neuroscience, Brown UniversityProvidenceUnited States
| | - John D Fisher
- Department of Neuroscience, Brown UniversityProvidenceUnited States
| | - Raphael Cohn
- Laboratory of Neurophysiology and Behavior, The Rockefeller UniversityNew YorkUnited States
| | - Altar Sorkaç
- Department of Neuroscience, Brown UniversityProvidenceUnited States
| | - Yoshi Aso
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Gilad Barnea
- Department of Neuroscience, Brown UniversityProvidenceUnited States
| | - Karla R Kaun
- Department of Neuroscience, Brown UniversityProvidenceUnited States
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42
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Abstract
Wind can act as an external cue to control an animal's heading. A new study reveals the neural mechanisms behind the wind information pathway in the insect brain.
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Affiliation(s)
- Basil El Jundi
- Biocenter, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany.
| | - Marie Dacke
- Department of Biology, Lund University, Sölvegatan 35, 22362 Lund, Sweden
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43
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Currier TA, Matheson AMM, Nagel KI. Encoding and control of orientation to airflow by a set of Drosophila fan-shaped body neurons. eLife 2020; 9:e61510. [PMID: 33377868 PMCID: PMC7793622 DOI: 10.7554/elife.61510] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 12/29/2020] [Indexed: 12/25/2022] Open
Abstract
The insect central complex (CX) is thought to underlie goal-oriented navigation but its functional organization is not fully understood. We recorded from genetically-identified CX cell types in Drosophila and presented directional visual, olfactory, and airflow cues known to elicit orienting behavior. We found that a group of neurons targeting the ventral fan-shaped body (ventral P-FNs) are robustly tuned for airflow direction. Ventral P-FNs did not generate a 'map' of airflow direction. Instead, cells in each hemisphere were tuned to 45° ipsilateral, forming a pair of orthogonal bases. Imaging experiments suggest that ventral P-FNs inherit their airflow tuning from neurons that provide input from the lateral accessory lobe (LAL) to the noduli (NO). Silencing ventral P-FNs prevented flies from selecting appropriate corrective turns following changes in airflow direction. Our results identify a group of CX neurons that robustly encode airflow direction and are required for proper orientation to this stimulus.
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Affiliation(s)
- Timothy A Currier
- Neuroscience Institute, New York University Langone Medical CenterNew YorkUnited States
- Center for Neural Science, New York UniversityNew YorkUnited States
| | - Andrew MM Matheson
- Neuroscience Institute, New York University Langone Medical CenterNew YorkUnited States
| | - Katherine I Nagel
- Neuroscience Institute, New York University Langone Medical CenterNew YorkUnited States
- Center for Neural Science, New York UniversityNew YorkUnited States
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44
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Cheong HS, Siwanowicz I, Card GM. Multi-regional circuits underlying visually guided decision-making in Drosophila. Curr Opin Neurobiol 2020; 65:77-87. [PMID: 33217639 DOI: 10.1016/j.conb.2020.10.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 09/30/2020] [Accepted: 10/02/2020] [Indexed: 12/26/2022]
Abstract
Visually guided decision-making requires integration of information from distributed brain areas, necessitating a brain-wide approach to examine its neural mechanisms. New tools in Drosophila melanogaster enable circuits spanning the brain to be charted with single cell-type resolution. Here, we highlight recent advances uncovering the computations and circuits that transform and integrate visual information across the brain to make behavioral choices. Visual information flows from the optic lobes to three primary central brain regions: a sensorimotor mapping area and two 'higher' centers for memory or spatial orientation. Rapid decision-making during predator evasion emerges from the spike timing dynamics in parallel sensorimotor cascades. Goal-directed decisions may occur through memory, navigation and valence processing in the central complex and mushroom bodies.
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Affiliation(s)
- Han Sj Cheong
- HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, VA 20147, United States
| | - Igor Siwanowicz
- HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, VA 20147, United States
| | - Gwyneth M Card
- HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, VA 20147, United States.
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45
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Luan H, Diao F, Scott RL, White BH. The Drosophila Split Gal4 System for Neural Circuit Mapping. Front Neural Circuits 2020; 14:603397. [PMID: 33240047 PMCID: PMC7680822 DOI: 10.3389/fncir.2020.603397] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Accepted: 10/06/2020] [Indexed: 12/22/2022] Open
Abstract
The diversity and dense interconnectivity of cells in the nervous system present a huge challenge to understanding how brains work. Recent progress toward such understanding, however, has been fuelled by the development of techniques for selectively monitoring and manipulating the function of distinct cell types-and even individual neurons-in the brains of living animals. These sophisticated techniques are fundamentally genetic and have found their greatest application in genetic model organisms, such as the fruit fly Drosophila melanogaster. Drosophila combines genetic tractability with a compact, but cell-type rich, nervous system and has been the incubator for a variety of methods of neuronal targeting. One such method, called Split Gal4, is playing an increasingly important role in mapping neural circuits in the fly. In conjunction with functional perturbations and behavioral screens, Split Gal4 has been used to characterize circuits governing such activities as grooming, aggression, and mating. It has also been leveraged to comprehensively map and functionally characterize cells composing important brain regions, such as the central complex, lateral horn, and the mushroom body-the latter being the insect seat of learning and memory. With connectomics data emerging for both the larval and adult brains of Drosophila, Split Gal4 is also poised to play an important role in characterizing neurons of interest based on their connectivity. We summarize the history and current state of the Split Gal4 method and indicate promising areas for further development or future application.
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Affiliation(s)
| | | | | | - Benjamin H. White
- Laboratory of Molecular Biology, National Institute of Mental Health, NIH, Bethesda, MD, United States
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46
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Homberg U, Hensgen R, Rieber E, Seyfarth J, Kern M, Dippel S, Dircksen H, Spänig L, Kina YP. Orcokinin in the central complex of the locust Schistocerca gregaria: Identification of immunostained neurons and colocalization with other neuroactive substances. J Comp Neurol 2020; 529:1876-1894. [PMID: 33128250 DOI: 10.1002/cne.25062] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 10/22/2020] [Accepted: 10/22/2020] [Indexed: 12/20/2022]
Abstract
The central complex is a group of highly interconnected neuropils in the insect brain. It is involved in the control of spatial orientation, based on external compass cues and various internal needs. The functional and neurochemical organization of the central complex has been studied in detail in the desert locust Schistocerca gregaria. In addition to classical neurotransmitters, immunocytochemistry has provided evidence for a major contribution of neuropeptides to neural signaling within the central complex. To complement these data, we have identified all orcokinin-immunoreactive neurons in the locust central complex and associated brain areas. About 50 bilateral pairs of neurons innervating all substructures of the central complex exhibit orcokinin immunoreactivity. Among these were about 20 columnar neurons, 33 bilateral pairs of tangential neurons of the central body, and seven pairs of tangential neurons of the protocerebral bridge. In silico transcript analysis suggests the presence of eight different orcokinin-A type peptides in the desert locust. Double label experiments showed that all orcokinin-immunostained tangential neurons of the lateral accessory lobe cluster were also immunoreactive for GABA and the GABA-synthesizing enzyme glutamic acid decarboxylase. Two types of tangential neurons of the upper division of the central body were, furthermore, also labeled with an antiserum against Dip-allatostatin I. No colocalization was found with serotonin immunostaining. The data provide additional insights into the neurochemical organization of the locust central complex and suggest that orcokinin-peptides of the orcokinin-A gene act as neuroactive substances at all stages of signal processing in this brain area.
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Affiliation(s)
- Uwe Homberg
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
| | - Ronja Hensgen
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
| | - Evelyn Rieber
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany.,Behavioral Physiology and Sociobiology, Biocenter, University of Würzburg, Würzburg, Germany
| | - Jutta Seyfarth
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
| | - Martina Kern
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
| | - Stefan Dippel
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
| | | | - Lisa Spänig
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
| | - Yelda Pakize Kina
- Department of Biology, Animal Physiology & Center for Mind, Brain and Behavior (CMBB), University of Marburg and Justus Liebig University Giessen, Marburg, Germany
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47
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Turner-Evans DB, Jensen KT, Ali S, Paterson T, Sheridan A, Ray RP, Wolff T, Lauritzen JS, Rubin GM, Bock DD, Jayaraman V. The Neuroanatomical Ultrastructure and Function of a Biological Ring Attractor. Neuron 2020; 108:145-163.e10. [PMID: 32916090 PMCID: PMC8356802 DOI: 10.1016/j.neuron.2020.08.006] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 05/20/2020] [Accepted: 08/05/2020] [Indexed: 01/31/2023]
Abstract
Neural representations of head direction (HD) have been discovered in many species. Theoretical work has proposed that the dynamics associated with these representations are generated, maintained, and updated by recurrent network structures called ring attractors. We evaluated this theorized structure-function relationship by performing electron-microscopy-based circuit reconstruction and RNA profiling of identified cell types in the HD system of Drosophila melanogaster. We identified motifs that have been hypothesized to maintain the HD representation in darkness, update it when the animal turns, and tether it to visual cues. Functional studies provided support for the proposed roles of individual excitatory or inhibitory circuit elements in shaping activity. We also discovered recurrent connections between neuronal arbors with mixed pre- and postsynaptic specializations. Our results confirm that the Drosophila HD network contains the core components of a ring attractor while also revealing unpredicted structural features that might enhance the network's computational power.
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Affiliation(s)
| | - Kristopher T Jensen
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA; Computational and Biological Learning Lab, Department of Engineering, University of Cambridge, Cambridge, UK
| | - Saba Ali
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Tyler Paterson
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Arlo Sheridan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Robert P Ray
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Tanya Wolff
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - J Scott Lauritzen
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Gerald M Rubin
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Davi D Bock
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA; Department of Neurological Sciences, Larner College of Medicine, University of Vermont, Burlington, VT 05405, USA
| | - Vivek Jayaraman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
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48
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Matched-filter coding of sky polarization results in an internal sun compass in the brain of the desert locust. Proc Natl Acad Sci U S A 2020; 117:25810-25817. [PMID: 32989147 DOI: 10.1073/pnas.2005192117] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Many animals use celestial cues for spatial orientation. These include the sun and, in insects, the polarization pattern of the sky, which depends on the position of the sun. The central complex in the insect brain plays a key role in spatial orientation. In desert locusts, the angle of polarized light in the zenith above the animal and the direction of a simulated sun are represented in a compass-like fashion in the central complex, but how both compasses fit together for a unified representation of external space remained unclear. To address this question, we analyzed the sensitivity of intracellularly recorded central-complex neurons to the angle of polarized light presented from up to 33 positions in the animal's dorsal visual field and injected Neurobiotin tracer for cell identification. Neurons were polarization sensitive in large parts of the virtual sky that in some cells extended to the horizon in all directions. Neurons, moreover, were tuned to spatial patterns of polarization angles that matched the sky polarization pattern of particular sun positions. The horizontal components of these calculated solar positions were topographically encoded in the protocerebral bridge of the central complex covering 360° of space. This whole-sky polarization compass does not support the earlier reported polarization compass based on stimulation from a small spot above the animal but coincides well with the previously demonstrated direct sun compass based on unpolarized light stimulation. Therefore, direct sunlight and whole-sky polarization complement each other for robust head direction coding in the locust central complex.
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49
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Timaeus L, Geid L, Sancer G, Wernet MF, Hummel T. Parallel Visual Pathways with Topographic versus Nontopographic Organization Connect the Drosophila Eyes to the Central Brain. iScience 2020; 23:101590. [PMID: 33205011 PMCID: PMC7648135 DOI: 10.1016/j.isci.2020.101590] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 06/21/2020] [Accepted: 09/16/2020] [Indexed: 11/12/2022] Open
Abstract
One hallmark of the visual system is a strict retinotopic organization from the periphery toward the central brain, where functional imaging in Drosophila revealed a spatially accurate representation of visual cues in the central complex. This raised the question how, on a circuit level, the topographic features are implemented, as the majority of visual neurons enter the central brain converge in optic glomeruli. We discovered a spatial segregation of topographic versus nontopographic projections of distinct classes of medullo-tubercular (MeTu) neurons into a specific visual glomerulus, the anterior optic tubercle (AOTU). These parallel channels synapse onto different tubercular-bulbar (TuBu) neurons, which in turn relay visual information onto specific central complex ring neurons in the bulb neuropil. Hence, our results provide the circuit basis for spatially accurate representation of visual information and highlight the AOTU's role as a prominent relay station for spatial information from the retina to the central brain. A Drosophila visual circuit conveys input from the periphery to the central brain Several synaptic pathways form parallel channels using the anterior optic tubercle Some pathways maintain topographic relationships across several synaptic steps Different target neurons in the central brain are identified
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Affiliation(s)
- Lorin Timaeus
- Department of Neurobiology, University of Vienna, Vienna, Austria
| | - Laura Geid
- Department of Neurobiology, University of Vienna, Vienna, Austria.,Center for Brain Research, Medical University of Vienna, Vienna, Austria
| | - Gizem Sancer
- Department of Biology, Freie Universität Berlin, Berlin, Germany
| | - Mathias F Wernet
- Department of Biology, Freie Universität Berlin, Berlin, Germany
| | - Thomas Hummel
- Department of Neurobiology, University of Vienna, Vienna, Austria
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50
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Natale JL, Hentschel HGE, Nemenman I. Precise spatial memory in local random networks. Phys Rev E 2020; 102:022405. [PMID: 32942429 DOI: 10.1103/physreve.102.022405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Accepted: 06/16/2020] [Indexed: 11/07/2022]
Abstract
Self-sustained, elevated neuronal activity persisting on timescales of 10 s or longer is thought to be vital for aspects of working memory, including brain representations of real space. Continuous-attractor neural networks, one of the most well-known modeling frameworks for persistent activity, have been able to model crucial aspects of such spatial memory. These models tend to require highly structured or regular synaptic architectures. In contrast, we study numerical simulations of a geometrically embedded model with a local, but otherwise random, connectivity profile; imposing a global regulation of our system's mean firing rate produces localized, finely spaced discrete attractors that effectively span a two-dimensional manifold. We demonstrate how the set of attracting states can reliably encode a representation of the spatial locations at which the system receives external input, thereby accomplishing spatial memory via attractor dynamics without synaptic fine-tuning or regular structure. We then measure the network's storage capacity numerically and find that the statistics of retrievable positions are also equivalent to a full tiling of the plane, something hitherto achievable only with (approximately) translationally invariant synapses, and which may be of interest in modeling such biological phenomena as visuospatial working memory in two dimensions.
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Affiliation(s)
- Joseph L Natale
- Department of Physics, Emory University, Atlanta, Georgia 30322, USA
| | | | - Ilya Nemenman
- Department of Physics, Department of Biology, and Initiative in Theory and Modeling of Living Systems, Emory University, Atlanta, Georgia 30322, USA
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