Probing the bonding in nitrogen-doped graphene using electron energy loss spectroscopy

Co-pyrolysis technology for enhancing the functionality of sewage sludge biochar and immobilizing heavy metals

Sewage sludge (SS) is a frequent and challenging issue for countries with big populations, due to its massive output, significant hazard potential, and challenging resource utilization. Pyrolysis can simultaneously realize the reduction, harmlessness and recycling of SS. Co-pyrolysis offers a wide range of potential in terms of increasing product quality and immobilizing heavy metals (HMs), thanks to its capacity to use additives to address the mismatch between SS characteristics and pyrolysis. High-value utilization potential of SS biochar is the key to evaluating the advancement of treatment technology. A further requirement for using biochar resources is the immobilization and bioavailability reduction of HMs. Due to the catalytic and synergistic effects in the co-pyrolysis process, co-pyrolysis SS biochar exhibits enhanced functionality and has been applied in soil improvement, pollutant adsorption and catalytic reactions. This review focuses on the research progress of different additives in improving the functionality of biochar and influencing the behavior of HMs. The key limitation and challenges in SS co-pyrolysis are then discussed. Future research prospects are detailed from seven perspectives, including pyrolysis process optimization, co-pyrolysis additive selection, catalytic mechanism research of process and product, biochar performance improvement and application field expansion, cooperative immobilization of HMs, and life cycle assessment. This review will offer recommendations and direction for future research paths, while also assist pertinent researchers in swiftly understanding the current state of SS pyrolysis research field.

Effects of Multiple Local Environments on Electron Energy Loss Spectra of Epitaxial Perovskite Interfaces

The role of local chemical environments in the electron energy loss spectra of complex multiferroic oxides was studied using computational and experimental techniques. The evolution of the O K-edge across an interface between bismuth ferrite (BFO) and lanthanum strontium manganate (LSMO) was considered through spectral averaging over crystallographically equivalent positions to capture the periodicity of the local O environments. Computational techniques were used to investigate the contribution of individual atomic environments to the overall spectrum, and the role of doping and strain was considered. Chemical variation, even at the low level, was found to have a major impact on the spectral features, whereas strain only induced a small chemical shift to the edge onset energy. Through a combination of these methods, it was possible to explain experimentally observed effects such as spectral flattening near the interface as the combination of spectral responses from multiple local atomic environments.

A Review on N-Doped Biochar for Oxidative Degradation of Organic Contaminants in Wastewater by Persulfate Activation

The Persulfate-based advanced oxidation process is the most efficient and commonly used technology to remove organic contaminants in wastewater. Due to the large surface area, unique electronic properties, abundant N functional groups, cost-effectiveness, and environmental friendliness, N-doped biochars (NBCs) are widely used as catalysts for persulfate activation. This review focuses on the NBC for oxidative degradation of organics-contaminated wastewater. Firstly, the preparation and modification methods of NBCs were reviewed. Then the catalytic performance of NBCs and modified NBCs on the oxidation degradation of organic contaminants were discussed with an emphasis on the degradation mechanism. We further summarized the detection technologies of activation mechanisms and the structures of NBCs affecting the PS activation, followed by the specific role of the N configuration of the NBC on its catalytic capacity. Finally, several challenges in the treatment of organics-contaminated wastewater by a persulfate-based advanced oxidation process were put forward and the recommendations for future research were proposed for further understanding of the advanced oxidation process activated by the NBC.

Carbon materials in persulfate-based advanced oxidation processes: The roles and construction of active sites

Many researchers have paid more attention to the progress of carbon materials owing to their advantages, such as high activity, low cost, large surface area, high conductivity and high stability. Carbon materials have been widely used in persulfate-based advanced oxidation processes (PS-AOPs), especially for graphene (G), carbon nanotubes (CNTs) and biochar (BC). Various strategies are applied to promote their activity, however, up to now, the relationship between the structures of carbon materials and their activities in PS-AOPs has not been specifically reviewed. The methods to switch reaction pathway (radical and nonradical pathways) in carbon-persulfate-based AOPs have not been systematically explored. Hereon, this review illustrated the active sites of G, CNTs, BC and other carbon materials, and generalized the modification methods to promote the activity of carbon materials and to switch reaction pathway in PS-AOPs. The roles of carbon materials in PS-AOPs were discussed around reactive oxygen species (ROS) and the structures. ROS are frequently complex in AOPs, but main ROS generation is related to the active sites on carbon materials. The structures of carbon materials (e.g., metal-carbon bonds, the electron-deficient C atoms, unbalanced electron distribution and graphitized structures) play a decisive role in the nonradical pathway. Finally, future breakthroughs of carbon materials were proposed for practical engineering and multi-field application.

Catalytic degradation of sulfamethoxazole by peroxymonosulfate activation system composed of nitrogen-doped biochar from pomelo peel: Important roles of defects and nitrogen, and detoxification of intermediates

Nitrogen doping could improve the catalytic performance of carbon materials, in which the nitrogen configuration could be used as active sites for peroxymonosulfate (PMS) activation. Herein, this paper studied how to turn waste to "treasure" by agriculture waste pomelo peel to prepare nitrogen-doped biochar and successfully applied it to advanced oxidation field. The effects of the sodium bicarbonate (NaHCO₃), melamine, and pyrolysis temperature on the catalytic activity of biochar for the removal of sulfamethoxazole (SMX) were investigated. The optimized nitrogen-doped biochar (C-N-M 1:3:4) possessed high specific surface area (SSA, 738 m²/g) and high level of nitrogen doping (nitrogen content 13.54 at%). Accordingly, it exhibited great catalytic performance for PMS activation to remove SMX antibiotic, and 95% of SMX was removed within 30 min. High catalytic activity of C-N-M 1:3:4 was attributed to rich defects, carbonyl group, high content of graphitic N and pyrrolic N, and large SSA, in which non-radical oxidation process based on singlet oxygen (¹O₂) and electron transfer contributed to the SMX degradation. The prepared nitrogen-doped biochar possessed high stability and reusability and the removal efficiency of SMX still reached 80% after four cycles. Additionally, the phytotoxicity assay indicated that the toxicity of degradation intermediates was obviously decreased in the PMS/ C-N-M 1:3:4 system.

ab initio description of bonding for transmission electron microscopy

The simulation of transmission electron microscopy (TEM) images or diffraction patterns is often required to interpret their contrast and extract specimen features. This is especially true for high-resolution phase-contrast imaging of materials, but electron scattering simulations based on atomistic models are widely used in materials science and structural biology. Since electron scattering is dominated by the nuclear cores, the scattering potential is typically described by the widely applied independent atom model. This approximation is fast and fairly accurate, especially for scanning TEM (STEM) annular dark-field contrast, but it completely neglects valence bonding and its effect on the transmitting electrons. However, an emerging trend in electron microscopy is to use new instrumentation and methods to extract the maximum amount of information from each electron. This is evident in the increasing popularity of techniques such as 4D-STEM combined with ptychography in materials science, and cryogenic microcrystal electron diffraction in structural biology, where subtle differences in the scattering potential may be both measurable and contain additional insights. Thus, there is increasing interest in electron scattering simulations based on electrostatic potentials obtained from first principles, mainly via density functional theory, which was previously mainly required for holography. In this Review, we discuss the motivation and basis for these developments, survey the pioneering work that has been published thus far, and give our outlook for the future. We argue that a physically better justified ab initio description of the scattering potential is both useful and viable for an increasing number of systems, and we expect such simulations to steadily gain in popularity and importance.

MoSx on Nitrogen-Doped Graphene for High-Efficiency Hydrogen Evolution Reaction: Unraveling the Mechanisms of Unique Interfacial Bonding for Efficient Charge Transport and Stability

Functional nanostructures with abundant exposed active sites and facile charge transport through conductive scaffolds to active sites are pivotal for developing an advanced and efficient electrocatalyst for water splitting. In the present study, by coating ∼3 nm MoS_x on nitrogen-doped graphene (NG) pre-engrafted on a flexible carbon cloth (MNG) as a model system, an extremely low Tafel slope of 39.6 mV dec^-1 with cyclic stability up to 5000 cycles is obtained. The specific fraction of N on the NG framework is also analyzed by X-ray photoelectron spectroscopy and X-ray absorption near edge spectroscopy with synchrotron radiation light sources, and it is found that the MoS_x particles are selectively positioned on the specific graphitic N sites, forming the unique Mo-N-C bonding state. This Mo-N-C bonding is founded to facilitate highly effective charge transfer directly to the active sulfur sites on the edges of MoS_x, leading to a highly improved hydrogen evolution reaction (HER) with excellent stability (95% retention @ 5000 cycles). The functional anchoring of MoS_x by such bonding prevents particle aggregation, which plays a significant role in maintaining the stability and activity of the catalyst. Furthermore, it has been revealed that MNG samples with adequately high amounts of both pyridinic and graphitic N result in the best HER performance. This work helps in understanding the mechanisms and bonding interactions within various catalysts and the scaffold electrode.

Direct imaging of light-element impurities in graphene reveals triple-coordinated oxygen

Along with hydrogen, carbon, nitrogen and oxygen are the arguably most important elements for organic chemistry. Due to their rich variety of possible bonding configurations, they can form a staggering number of compounds. Here, we present a detailed analysis of nitrogen and oxygen bonding configurations in a defective carbon (graphene) lattice. Using aberration-corrected scanning transmission electron microscopy and single-atom electron energy loss spectroscopy, we directly imaged oxygen atoms in graphene oxide, as well as nitrogen atoms implanted into graphene. The collected data allows us to compare nitrogen and oxygen bonding configurations, showing clear differences between the two elements. As expected, nitrogen forms either two or three bonds with neighboring carbon atoms, with three bonds being the preferred configuration. Oxygen, by contrast, tends to bind with only two carbon atoms. Remarkably, however, triple-coordinated oxygen with three carbon neighbors is also observed, a configuration that is exceedingly rare in organic compounds.

Annular dark field scanning transmission electron microscopy is able to distinguish the contrasts between light elements. Here, the authors directly image the bonding configurations of oxygen and nitrogen atoms in defective graphene, and surprisingly identify instances of unusual triple-coordinated oxygen with three carbon neighbors.

One-step synthesis of nitrogen-doped sludge carbon as a bifunctional material for the adsorption and catalytic oxidation of organic pollutants

Nitrogen-doped carbon (NC) materials have been extensively investigated for their great potential applications in adsorption, catalysis, etc. Herein, we report a facile one-step pyrolysis process for NC synthesis using abundant bio-waste of excess sludge as carbon source and cheap precursor of urea as nitrogen source. The developed materials were evaluated for organic pollutants removal through adsorption and catalytic oxidation by peroxymonosulfate (PMS) activation. Experimental results demonstrated that nitrogen doping significantly affected the elemental composition and microstructure of NC, leading to improved adsorption capability as well as PMS activation activity for methylene blue (MB) removal. The adsorption capacity for MB reached 35.831 mg g^-1 over NC-700 sample (NC prepared at 700 °C). In MB catalytic oxidation experiments, effects of sample calcination temperature, catalyst dosage, PMS loading, and co-existing ions were investigated. Under optimal reaction conditions, 98.70% of MB could be removed in 20 min. Through radical quenching and electron spin resonance (ESR) tests, it was confirmed that singlet oxygen (¹O₂) was the main reactive species for MB degradation. Additionally, NC-700 performed well in recycle studies without significant efficiency loss. Other typical organic pollutants including malachite green (MG), methyl orange (MO), bisphenol A (BPA), phenol (PE), and sulfamethoxazole (SMX) could also be removed using NC-700 as adsorbent and catalyst. These features manifest that excess sludge-derived NC could be a promising material for organic pollutants remediation.

TriQuinoline

The bottom-up synthesis of structurally well-defined motifs of graphitic materials is crucial to understanding their physicochemical properties and to elicit new functions. Herein, we report the design and synthesis of TriQuinoline (TQ) as a molecular model for pyridinic-nitrogen defects in graphene sheets. TQ is a trimer of quinoline units concatenated at the 2- and 8-positions in a head-to-tail fashion, whose structure leads to unusual aromatisation behaviour at the final stage of the synthesis. The central atomic-sized void endows TQ with high proton affinity, which was confirmed empirically and computationally. TQ•H⁺ is a two-dimensional cationic molecule that displays both π-π and CH-π contact modes, culminating in the formation of the ternary complex ([12]cycloparaphenylene(CPP) ⊃ (TQ•H⁺/coronene)) that consists of TQ•H⁺, coronene (flat), and [12]cycloparaphenylene ([12]CPP) (ring). The water-miscibility of TQ•H⁺ allows it to serve as an efficient DNA intercalator for e.g. the inhibition of topoisomerase I activity.

Engineering single-atom dynamics with electron irradiation

Atomic engineering is envisioned to involve selectively inducing the desired dynamics of single atoms and combining these steps for larger-scale assemblies. Here, we focus on the first part by surveying the single-step dynamics of graphene dopants, primarily phosphorus, caused by electron irradiation both in experiment and simulation, and develop a theory for describing the probabilities of competing configurational outcomes depending on the postcollision momentum vector of the primary knock-on atom. The predicted branching ratio of configurational transformations agrees well with our atomically resolved experiments. This suggests a way for biasing the dynamics toward desired outcomes, paving the road for designing and further upscaling atomic engineering using electron irradiation.

Building Structures Atom by Atom via Electron Beam Manipulation

Building materials from the atom up is the pinnacle of materials fabrication. Until recently the only platform that offered single-atom manipulation was scanning tunneling microscopy. Here controlled manipulation and assembly of a few atom structures are demonstrated by bringing together single atoms using a scanning transmission electron microscope. An atomically focused electron beam is used to introduce Si substitutional defects and defect clusters in graphene with spatial control of a few nanometers and enable controlled motion of Si atoms. The Si substitutional defects are then further manipulated to form dimers, trimers, and more complex structures. The dynamics of a beam-induced atomic-scale chemical process is captured in a time-series of images at atomic resolution. These studies suggest that control of the e-beam-induced local processes offers the next step toward atom-by-atom nanofabrication, providing an enabling tool for the study of atomic-scale chemistry in 2D materials and fabrication of predefined structures and defects with atomic specificity.

Local Plasmon Engineering in Doped Graphene

Single-atom B or N substitutional doping in single-layer suspended graphene, realized by low-energy ion implantation, is shown to induce a dampening or enhancement of the characteristic interband π plasmon of graphene through a high-resolution electron energy loss spectroscopy study using scanning transmission electron microscopy. A relative 16% decrease or 20% increase in the π plasmon quality factor is attributed to the presence of a single substitutional B or N atom dopant, respectively. This modification is in both cases shown to be relatively localized, with data suggesting the plasmonic response tailoring can no longer be detected within experimental uncertainties beyond a distance of approximately 1 nm from the dopant. Ab initio calculations confirm the trends observed experimentally. Our results directly confirm the possibility of tailoring the plasmonic properties of graphene in the ultraviolet waveband at the atomic scale, a crucial step in the quest for utilizing graphene's properties toward the development of plasmonic and optoelectronic devices operating at ultraviolet frequencies.

Atomistic Interrogation of B-N Co-dopant Structures and Their Electronic Effects in Graphene

Chemical doping has been demonstrated to be an effective method for producing high-quality, large-area graphene with controlled carrier concentrations and an atomically tailored work function. The emergent optoelectronic properties and surface reactivity of carbon nanostructures are dictated by the microstructure of atomic dopants. Co-doping of graphene with boron and nitrogen offers the possibility to further tune the electronic properties of graphene at the atomic level, potentially creating p- and n-type domains in a single carbon sheet, opening a gap between valence and conduction bands in the 2-D semimetal. Using a suite of high-resolution synchrotron-based X-ray techniques, scanning tunneling microscopy, and density functional theory based computation we visualize and characterize B-N dopant bond structures and their electronic effects at the atomic level in single-layer graphene grown on a copper substrate. We find there is a thermodynamic driving force for B and N atoms to cluster into BNC structures in graphene, rather than randomly distribute into isolated B and N graphitic dopants, although under the present growth conditions, kinetics limit segregation of large B-N domains. We observe that the doping effect of these BNC structures, which open a small band gap in graphene, follows the B:N ratio (B > N, p-type; B < N, n-type; B═N, neutral). We attribute this to the comparable electron-withdrawing and -donating effects, respectively, of individual graphitic B and N dopants, although local electrostatics also play a role in the work function change.

Hollow CoP nanopaticle/N-doped graphene hybrids as highly active and stable bifunctional catalysts for full water splitting

An alkaline electrolyzer fabricated by employing hollow CoP nanoparticles/N-doped graphene as bifunctional catalysts exhibits remarkable activity with a current density of 10 mA cm(-2) at a cell voltage of 1.58 V and considerable stability over 65 h of continuous electrolysis operation, favorably comparable to the integrated performance of commercial Pt/C and IrO2.

Counting vacancies and nitrogen-vacancy centers in detonation nanodiamond

Detonation nanodiamond particles (DND) contain highly-stable nitrogen-vacancy (N-V) centers, making it important for quantum-optical and biotechnology applications. However, due to the small particle size, the N-V concentrations are believed to be intrinsically very low, spawning efforts to understand the formation of N-V centers and vacancies, and increase their concentration. Here we show that vacancies in DND can be detected and quantified using simulation-aided electron energy loss spectroscopy. Despite the small particle size, we find that vacancies exist at concentrations of about 1 at%. Based on this experimental finding, we use ab initio calculations to predict that about one fifth of vacancies in DND form N-V centers. The ability to directly detect and quantify vacancies in DND, and predict the corresponding N-V formation probability, has a significant impact to those emerging technologies where higher concentrations and better dispersion of N-V centres are critically required.

Site-projected electronic structure of two-dimensional Ti3C2MXene: the role of the surface functionalization groups

The role of the surface groups in chemical bonding in two dimensional Ti₃C₂is evidenced at the nano-object level.

Electronic Structure Modification of Ion Implanted Graphene: The Spectroscopic Signatures of p- and n-Type Doping

A combination of scanning transmission electron microscopy, electron energy loss spectroscopy, and ab initio calculations is used to describe the electronic structure modifications incurred by free-standing graphene through two types of single-atom doping. The N K and C K electron energy loss transitions show the presence of π* bonding states, which are highly localized around the N dopant. In contrast, the B K transition of a single B dopant atom shows an unusual broad asymmetric peak which is the result of delocalized π* states away from the B dopant. The asymmetry of the B K toward higher energies is attributed to highly localized σ* antibonding states. These experimental observations are then interpreted as direct fingerprints of the expected p- and n-type behavior of graphene doped in this fashion, through careful comparison with density functional theory calculations.

Structural and Chemical Dynamics of Pyridinic-Nitrogen Defects in Graphene

High density and controllable nitrogen doping in graphene is a critical issue to realize high performance graphene-based devices. In this paper, we demonstrate an efficient method to selectively produce graphitic-N and pyridinic-N defects in graphene by using the mixture plasma of ozone and nitrogen. The atomic structure, electronic structure, and dynamic behavior of these nitrogen defects are systematically studied at the atomic level by using a scanning transmission electron microscopy. The pyridinic-N exhibits higher chemical activity and tends to trap a series of transition metal atoms (Mg, Al, Ca, Ti, Cr, Mn, and Fe) as individual atoms.

Engineering high charge transfer n-doping of graphene electrodes and its application to organic electronics

Using thermally evaporated cesium carbonate (Cs2CO3) in an organic matrix, we present a novel strategy for efficient n-doping of monolayer graphene and a ∼90% reduction in its sheet resistance to ∼250 Ohm sq(-1). Photoemission spectroscopy confirms the presence of a large interface dipole of ∼0.9 eV between graphene and the Cs2CO3/organic matrix. This leads to a strong charge transfer based doping of graphene with a Fermi level shift of ∼1.0 eV. Using this approach we demonstrate efficient, standard industrial manufacturing process compatible graphene-based inverted organic light emitting diodes on glass and flexible substrates with efficiencies comparable to those of state-of-the-art ITO based devices.

Spatially Confined Hybridization of Nanometer-Sized NiFe Hydroxides into Nitrogen-Doped Graphene Frameworks Leading to Superior Oxygen Evolution Reactivity

Nanometer-sized hydroxide active centers are uniformly and strongly hybridized into a graphene framework by means of defect-anchored nucleation and spatially confined growth, resulting in a superior electrocatalyst for oxygen evolution reaction. This family of strongly coupled complexes and the topology-assisted fabrication strategy is expected to open up new avenues of research. It sheds light on a novel branch of advanced nano-architectured materials.

Possibilities and limitations of advanced transmission electron microscopy for carbon-based nanomaterials

A major revolution for electron microscopy in the past decade is the introduction of aberration correction, which enables one to increase both the spatial resolution and the energy resolution to the optical limit. Aberration correction has contributed significantly to the imaging at low operating voltages. This is crucial for carbon-based nanomaterials which are sensitive to electron irradiation. The research of carbon nanomaterials and nanohybrids, in particular the fundamental understanding of defects and interfaces, can now be carried out in unprecedented detail by aberration-corrected transmission electron microscopy (AC-TEM). This review discusses new possibilities and limits of AC-TEM at low voltage, including the structural imaging at atomic resolution, in three dimensions and spectroscopic investigation of chemistry and bonding. In situ TEM of carbon-based nanomaterials is discussed and illustrated through recent reports with particular emphasis on the underlying physics of interactions between electrons and carbon atoms.

Graphene-based transition metal oxide nanocomposites for the oxygen reduction reaction

The development of low cost, durable and efficient nanocatalysts to substitute expensive and rare noble metals (e.g. Pt, Au and Pd) in overcoming the sluggish kinetic process of the oxygen reduction reaction (ORR) is essential to satisfy the demand for sustainable energy conversion and storage in the future. Graphene based transition metal oxide nanocomposites have extensively been proven to be a type of promising highly efficient and economic nanocatalyst for optimizing the ORR to solve the world-wide energy crisis. Synthesized nanocomposites exhibit synergetic advantages and avoid the respective disadvantages. In this feature article, we concentrate on the recent leading works of different categories of introduced transition metal oxides on graphene: from the commonly-used classes (FeOx, MnOx, and CoOx) to some rare and heat-studied issues (TiOx, NiCoOx and Co-MnOx). Moreover, the morphologies of the supported oxides on graphene with various dimensional nanostructures, such as one dimensional nanocrystals, two dimensional nanosheets/nanoplates and some special multidimensional frameworks are further reviewed. The strategies used to synthesize and characterize these well-designed nanocomposites and their superior properties for the ORR compared to the traditional catalysts are carefully summarized. This work aims to highlight the meaning of the multiphase establishment of graphene-based transition metal oxide nanocomposites and its structural-dependent ORR performance and mechanisms.

X-ray photoelectron spectroscopy of graphitic carbon nanomaterials doped with heteroatoms

X-ray photoelectron spectroscopy (XPS) is one of the best tools for studying the chemical modification of surfaces, and in particular the distribution and bonding of heteroatom dopants in carbon nanomaterials such as graphene and carbon nanotubes. Although these materials have superb intrinsic properties, these often need to be modified in a controlled way for specific applications. Towards this aim, the most studied dopants are neighbors to carbon in the periodic table, nitrogen and boron, with phosphorus starting to emerge as an interesting new alternative. Hundreds of studies have used XPS for analyzing the concentration and bonding of dopants in various materials. Although the majority of works has concentrated on nitrogen, important work is still ongoing to identify its precise atomic bonding configurations. In general, care should be taken in the preparation of a suitable sample, consideration of the intrinsic photoemission response of the material in question, and the appropriate spectral analysis. If this is not the case, incorrect conclusions can easily be drawn, especially in the assignment of measured binding energies into specific atomic configurations. Starting from the characteristics of pristine materials, this review provides a practical guide for interpreting X-ray photoelectron spectra of doped graphitic carbon nanomaterials, and a reference for their binding energies that are vital for compositional analysis via XPS.

Stability and spectroscopy of single nitrogen dopants in graphene at elevated temperatures

Single nitrogen (N) dopants in graphene are investigated using atomic-resolution scanning transmission electron microscopy (STEM) combined with electron energy loss spectroscopy (EELS). Using an in situ heating holder at 500 °C provided us with clean graphene surfaces, and we demonstrate that isolated N substitutional atoms remain localized and stable in the graphene lattice even during local sp(2) bond reconstruction. The high stability of isolated N dopants enabled us to acquire 2D EELS maps with simultaneous ADF-STEM images to map out the local bonding variations. We show that a substitutional N dopant causes changes in the EELS of the carbon (C) atoms it is directly bonded to. An upshift in the π* peak of the C K-edge EELS of ∼0.5 eV is resolved and supported by density functional theory simulations.

Atomic configuration of nitrogen-doped single-walled carbon nanotubes

Having access to the chemical environment at the atomic level of a dopant in a nanostructure is crucial for the understanding of its properties. We have performed atomically resolved electron energy-loss spectroscopy to detect individual nitrogen dopants in single-walled carbon nanotubes and compared with first-principles calculations. We demonstrate that nitrogen doping occurs as single atoms in different bonding configurations: graphitic-like and pyrrolic-like substitutional nitrogen neighboring local lattice distortion such as Stone-Thrower-Wales defects. We also show that the largest fraction of nitrogen amount is found in poly aromatic species that are adsorbed on the surface of the nanotube walls. The stability under the electron beam of these nanotubes has been studied in two different cases of nitrogen incorporation content and configuration. These findings provide key information for the applications of these nanostructures.

In-situ observation and atomic resolution imaging of the ion irradiation induced amorphisation of graphene

Ion irradiation has been observed to induce a macroscopic flattening and in-plane shrinkage of graphene sheets without a complete loss of crystallinity. Electron diffraction studies performed during simultaneous in-situ ion irradiation have allowed identification of the fluence at which the graphene sheet loses long-range order. This approach has facilitated complementary ex-situ investigations, allowing the first atomic resolution scanning transmission electron microscopy images of ion-irradiation induced graphene defect structures together with quantitative analysis of defect densities using Raman spectroscopy.

Silicon-carbon bond inversions driven by 60-keV electrons in graphene

We demonstrate that 60-keV electron irradiation drives the diffusion of threefold-coordinated Si dopants in graphene by one lattice site at a time. First principles simulations reveal that each step is caused by an electron impact on a C atom next to the dopant. Although the atomic motion happens below our experimental time resolution, stochastic analysis of 38 such lattice jumps reveals a probability for their occurrence in a good agreement with the simulations. Conversions from three- to fourfold coordinated dopant structures and the subsequent reverse process are significantly less likely than the direct bond inversion. Our results thus provide a model of nondestructive and atomically precise structural modification and detection for two-dimensional materials.

Density functional theory in the solid state

Density functional theory (DFT) has been used in many fields of the physical sciences, but none so successfully as in the solid state. From its origins in condensed matter physics, it has expanded into materials science, high-pressure physics and mineralogy, solid-state chemistry and more, powering entire computational subdisciplines. Modern DFT simulation codes can calculate a vast range of structural, chemical, optical, spectroscopic, elastic, vibrational and thermodynamic phenomena. The ability to predict structure-property relationships has revolutionized experimental fields, such as vibrational and solid-state NMR spectroscopy, where it is the primary method to analyse and interpret experimental spectra. In semiconductor physics, great progress has been made in the electronic structure of bulk and defect states despite the severe challenges presented by the description of excited states. Studies are no longer restricted to known crystallographic structures. DFT is increasingly used as an exploratory tool for materials discovery and computational experiments, culminating in ex nihilo crystal structure prediction, which addresses the long-standing difficult problem of how to predict crystal structure polymorphs from nothing but a specified chemical composition. We present an overview of the capabilities of solid-state DFT simulations in all of these topics, illustrated with recent examples using the CASTEP computer program.

Dissociation of oxygen on pristine and nitrogen-doped carbon nanotubes: a spin-polarized density functional study

The oxygen adsorption energies for pristine and N-doped single-walled carbon nanotubes of different diameters.