1
|
Luo K, Guo J, He D, Li G, Ouellet T. Deoxynivalenol accumulation and detoxification in cereals and its potential role in wheat- Fusarium graminearum interactions. aBIOTECH 2023; 4:155-171. [PMID: 37581023 PMCID: PMC10423186 DOI: 10.1007/s42994-023-00096-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 01/27/2023] [Indexed: 08/16/2023]
Abstract
Deoxynivalenol (DON) is a prominent mycotoxin showing significant accumulation in cereal plants during infection by the phytopathogen Fusarium graminearum. It is a virulence factor that is important in the spread of F. graminearum within cereal heads, and it causes serious yield losses and significant contamination of cereal grains. In recent decades, genetic and genomic studies have facilitated the characterization of the molecular pathways of DON biosynthesis in F. graminearum and the environmental factors that influence DON accumulation. In addition, diverse scab resistance traits related to the repression of DON accumulation in plants have been identified, and experimental studies of wheat-pathogen interactions have contributed to understanding detoxification mechanisms in host plants. The present review illustrates and summarizes the molecular networks of DON mycotoxin production in F. graminearum and the methods of DON detoxification in plants based on the current literature, which provides molecular targets for crop improvement programs. This review also comprehensively discusses recent advances and challenges related to genetic engineering-mediated cultivar improvements to strengthen scab resistance. Furthermore, ongoing advancements in genetic engineering will enable the application of these molecular targets to develop more scab-resistant wheat cultivars with DON detoxification traits.
Collapse
Affiliation(s)
- Kun Luo
- Shaanxi Key Laboratory of Chinese Jujube, College of Life Science, Yan’an University, Yan’an, 716000 China
| | - Jiao Guo
- Shaanxi Key Laboratory of Chinese Jujube, College of Life Science, Yan’an University, Yan’an, 716000 China
| | - Dejia He
- Shaanxi Key Laboratory of Chinese Jujube, College of Life Science, Yan’an University, Yan’an, 716000 China
| | - Guangwei Li
- Shaanxi Key Laboratory of Chinese Jujube, College of Life Science, Yan’an University, Yan’an, 716000 China
| | - Thérèse Ouellet
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6 Canada
| |
Collapse
|
2
|
Wang Y, Jiang Z, Qin A, Wang F, Chang E, Liu Y, Nie W, Tan C, Yuan Y, Dong Y, Huang R, Jia Z, Wang J. Population Structure, Genetic Diversity and Candidate Genes for the Adaptation to Environmental Stress in Picea koraiensis. Plants (Basel) 2023; 12:1266. [PMID: 36986954 PMCID: PMC10055018 DOI: 10.3390/plants12061266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 03/07/2023] [Accepted: 03/08/2023] [Indexed: 06/19/2023]
Abstract
Picea koraiensis is major silvicultural and timber species in northeast China, and its distribution area is an important transition zone for genus spruce migration. The degree of intraspecific differentiation of P. koraiensis is high, but population structure and differentiation mechanisms are not clear. In this study, 523,761 single nucleotide polymorphisms (SNPs) were identified in 113 individuals from 9 populations of P. koraiensis by genotyping-by-sequencing (GBS). Population genomic analysis showed that P. koraiensis was divided into three geoclimatic regions: Great Khingan Mountains climatic region, Lesser Khingan Mountains climatic region, and Changbai Mountain climatic region. Mengkeshan (MKS) population on the northern edge of the distribution area and Wuyiling (WYL) population located in the mining area are two highly differentiated groups. Selective sweep analysis showed that MKS and WYL populations had 645 and 1126 selected genes, respectively. Genes selected in the MKS population were associated with flowering and photomorphogenesis, cellular response to water deficit, and glycerophospholipid metabolism; genes selected in the WYL population were associated with metal ion transport, biosynthesis of macromolecules, and DNA repair. Climatic factors and heavy metal stress drives divergence in MKS and WYL populations, respectively. Our findings provide insights into adaptive divergence mechanisms in Picea and will contribute to molecular breeding studies.
Collapse
Affiliation(s)
- Ya Wang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Zeping Jiang
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Aili Qin
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Fude Wang
- Forestry Research Institute in Heilongjiang Province, Harbin 150081, China
| | - Ermei Chang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Yifu Liu
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Wen Nie
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Cancan Tan
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Yanchao Yuan
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Yao Dong
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Ruizhi Huang
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Zirui Jia
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Junhui Wang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| |
Collapse
|
3
|
Xu P, Li Q, Liang W, Hu Y, Chen R, Lou K, Zhan L, Wu X, Pu J. A tissue-specific profile of miRNAs and their targets related to paeoniaflorin and monoterpenoids biosynthesis in Paeonia lactiflora Pall. by transcriptome, small RNAs and degradome sequencing. PLoS One 2023; 18:e0279992. [PMID: 36701382 PMCID: PMC9879538 DOI: 10.1371/journal.pone.0279992] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 12/19/2022] [Indexed: 01/27/2023] Open
Abstract
Paeonia lactiflora Pall. (Paeonia) has aroused many concerns due to its extensive medicinal value, in which monoterpene glucoside paeoniflorin and its derivatives are the active chemical components. However, little is known in the molecular mechanism of monoterpenoids biosynthesis, and the regulation network between small RNAs and mRNAs in monoterpenoids biosynthesis has not been investigated yet. Herein, we attempted to reveal the tissue-specific regulation network of miRNAs and their targets related to paeoniaflorin and monoterpenoids biosynthesis in Paeonia by combining mRNA and miRNA expression data with degradome analysis. In all, 289 miRNAs and 30177 unigenes were identified, of which nine miRNAs from seven miRNA families including miR396, miR393, miR835, miR1144, miR3638, miR5794 and miR9555 were verified as monoterpenoids biosynthesis-related miRNAs by degradome sequencing. Moreover, the co-expression network analysis showed that four monoterpenoids-regulating TFs, namely AP2, MYBC1, SPL12 and TCP2, were putatively regulated by five miRNAs including miR172, miR828, miR858, miR156 and miR319, respectively. The present study will improve our knowledge of the molecular mechanisms of the paeoniaflorin and monoterpenoids biosynthesis mediated by miRNA to a new level, and provide a valuable resource for further study on Paeonia.
Collapse
Affiliation(s)
- Pan Xu
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Quanqing Li
- Department of Pharmacy, Zhejiang Xiaoshan Hospital, Hangzhou, Zhejiang Province, China
| | - Weiqing Liang
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Yijuan Hu
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Rubing Chen
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Kelang Lou
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Lianghui Zhan
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Xiaojun Wu
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Jinbao Pu
- Center for Medicinal Resources Research, Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, Zhejiang Province, China
- Key Laboratory of Research and Development of Chinese Medicine of Zhejiang Province, Hangzhou, Zhejiang Province, China
- * E-mail:
| |
Collapse
|
4
|
Li R, Wang S, Chang J, Pan X, Dong F, Li Z, Zheng Y, Li Y. Insight into the uptake and metabolism of a new insecticide cyetpyrafen in plants. Environ Int 2022; 169:107522. [PMID: 36137426 DOI: 10.1016/j.envint.2022.107522] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 08/19/2022] [Accepted: 09/12/2022] [Indexed: 06/16/2023]
Abstract
As new agrochemicals are continuously introduced into agricultural systems, it is essential to investigate their uptake and metabolism by plants to better evaluate their fate and accumulation in crops and the subsequent risks to human exposure. In this study, the uptake and elimination kinetics and transformation of a novel insecticide, cyetpyrafen, in two model crops (lettuce and rice) were first evaluated by hydroponic experiments. Cyetpyrafen was rapidly taken up by plant roots and reached a steady state within 24 h, and it was preferentially accumulated in root parts with root concentration factors up to 2670 mL/g. An uptake mechanism study suggested that root uptake of cyetpyrafen was likely to be dominated by passive diffusion and was difficult to transport via xylem and phloem. Ten phase I and three phase II metabolites of cyetpyrafen were tentatively identified in the hydroponic-plant system through a nontarget screening strategy. The structures of two main metabolites (M-309 and M-391) were confirmed by synthesized standards. The metabolic pathways were proposed including hydroxylation, hydrolysis, dehydrogenation, dehydration and conjugation, which were assumed to be regulated by cytochrome P450, carboxylesterase, glycosyltransferase, glutathione S-transferases and peroxidase. Cyetpyrafen and its main metabolites (M-409, M-309 and M-391) were estimated to be harmful/toxic toward nontarget organisms by theoretical calculation. The high bioaccumulation and extensive transformation of cyetpyrafen highlighted the necessity for systematically assessing the crop uptake and metabolism of new agrochemicals.
Collapse
Affiliation(s)
- Runan Li
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Sijia Wang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Jinhe Chang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Xinglu Pan
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Fengshou Dong
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Zhiyuan Li
- Shanghai AB Sciex Analytical Instrument Trading Co, Ltd, Beijing 100015, PR China
| | - Yongquan Zheng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Yuanbo Li
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China.
| |
Collapse
|
5
|
Knoch E, Kovács J, Deiber S, Tomita K, Shanmuganathan R, Serra Serra N, Okada K, Becker C, Schandry N. Transcriptional response of a target plant to benzoxazinoid and diterpene allelochemicals highlights commonalities in detoxification. BMC Plant Biol 2022; 22:402. [PMID: 35974304 PMCID: PMC9382751 DOI: 10.1186/s12870-022-03780-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 07/28/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Plants growing in proximity to other plants are exposed to a variety of metabolites that these neighbors release into the environment. Some species produce allelochemicals to inhibit growth of neighboring plants, which in turn have evolved ways to detoxify these compounds. RESULTS In order to understand how the allelochemical-receiving target plants respond to chemically diverse compounds, we performed whole-genome transcriptome analysis of Arabidopsis thaliana exposed to either the benzoxazinoid derivative 2-amino- 3H-phenoxazin-3-one (APO) or momilactone B. These two allelochemicals belong to two very different compound classes, benzoxazinoids and diterpenes, respectively, produced by different Poaceae crop species. CONCLUSIONS Despite their distinct chemical nature, we observed similar molecular responses of A. thaliana to these allelochemicals. In particular, many of the same or closely related genes belonging to the three-phase detoxification pathway were upregulated in both treatments. Further, we observed an overlap between genes upregulated by allelochemicals and those involved in herbicide detoxification. Our findings highlight the overlap in the transcriptional response of a target plant to natural and synthetic phytotoxic compounds and illustrate how herbicide resistance could arise via pathways involved in plant-plant interaction.
Collapse
Affiliation(s)
- Eva Knoch
- LMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, 82152, Martinsried, Germany
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria
| | - Judit Kovács
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria
| | - Sebastian Deiber
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria
| | - Keisuke Tomita
- Agro-Biotechnology Research Center (AgTECH), Graduate School of Agricultural and Life Sciences (GSALS), The University of Tokyo, Tokyo, 113-8657, Japan
| | - Reshi Shanmuganathan
- LMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, 82152, Martinsried, Germany
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria
| | - Núria Serra Serra
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria
| | - Kazunori Okada
- Agro-Biotechnology Research Center (AgTECH), Graduate School of Agricultural and Life Sciences (GSALS), The University of Tokyo, Tokyo, 113-8657, Japan
| | - Claude Becker
- LMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, 82152, Martinsried, Germany.
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria.
| | - Niklas Schandry
- LMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, 82152, Martinsried, Germany.
- Gregor Mendel Institute of Molecular Plant Biology GmbH, Austrian Academy of Sciences, Vienna BioCenter (VBC), 1030, Vienna, Austria.
| |
Collapse
|
6
|
McEvoy SL, Sezen UU, Trouern‐Trend A, McMahon SM, Schaberg PG, Yang J, Wegrzyn JL, Swenson NG. Strategies of tolerance reflected in two North American maple genomes. Plant J 2022; 109:1591-1613. [PMID: 34967059 PMCID: PMC9304320 DOI: 10.1111/tpj.15657] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 12/22/2021] [Indexed: 05/24/2023]
Abstract
The first chromosome‐scale assemblies for North American members of the Acer genus, sugar maple (Acer saccharum) and boxelder (Acer negundo), as well as transcriptomic evaluation of the abiotic stress response in A. saccharum are reported. This integrated study describes in‐depth aspects contributing to each species' approach to tolerance and applies current knowledge in many areas of plant genome biology with Acer physiology to help convey the genomic complexities underlying tolerance in broadleaf tree species.
Collapse
Affiliation(s)
- Susan L. McEvoy
- Department of Ecology and Evolutionary BiologyUniversity of ConnecticutStorrsConnecticut06269USA
| | - U. Uzay Sezen
- Smithsonian Environmental Research CenterEdgewaterMaryland21037USA
| | - Alexander Trouern‐Trend
- Department of Ecology and Evolutionary BiologyUniversity of ConnecticutStorrsConnecticut06269USA
| | - Sean M. McMahon
- Smithsonian Environmental Research CenterEdgewaterMaryland21037USA
| | - Paul G. Schaberg
- Forest ServiceU.S. Department of Agriculture, Northern Research StationBurlingtonVermont05405USA
| | - Jie Yang
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical GardenChinese Academy of SciencesMengla666303YunnanChina
| | - Jill L. Wegrzyn
- Department of Ecology and Evolutionary BiologyUniversity of ConnecticutStorrsConnecticut06269USA
| | - Nathan G. Swenson
- Department of Biological SciencesUniversity of Notre DameNotre DameIndiana46556USA
| |
Collapse
|
7
|
Chen M, Wang L, Zheng X, Cohen M, Li X. Cross-Kingdom Comparative Transcriptomics Reveals Conserved Genetic Modules in Response to Cadmium Stress. mSystems 2021; 6:e0118921. [PMID: 34874779 DOI: 10.1128/mSystems.01189-21] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
It is known that organisms have developed various mechanisms to cope with cadmium (Cd) stress, while we still lack a system-level understanding of the functional isomorphy among them. In the present study, a cross-kingdom comparison was conducted among Escherichia coli, Saccharomyces cerevisiae, and Chlamydomonas reinhardtii, through toxicological tests, comparative transcriptomics, as well as conventional functional genomics. An equivalent level of Cd stress was determined via inhibition tests. Through transcriptome comparison, the three organisms exhibited differential gene expression under the same Cd stress relative to the corresponding no-treatment control. Results from functional enrichment analysis of differentially expressed genes (DEGs) showed that four metabolic pathways responsible for combating Cd stress were commonly regulated in the three organisms, including antioxidant reactions, sulfur metabolism, cell wall remodeling, and metal transport. In vivo expression patterns of 43 DEGs from the four pathways were further examined using quantitative PCR and resulted in a relatively comparable dynamic of gene expression patterns with transcriptome sequencing (RNA-seq). Cross-kingdom comparison of typical Cd stress-responding proteins resulted in the detection of 12 groups of homologous proteins in the three species. A class of potential metal transporters were subjected to cross-transformation to test their functional complementation. An ABC transporter gene in E. coli, possibly homologous to the yeast ycf1, was heterologously expressed in S. cerevisiae, resulting in enhanced Cd tolerance. Overall, our findings indicated that conserved genetic modules against Cd toxicity were commonly regulated among distantly related microbial species, which will be helpful for utilizing them in modifying microbial traits for bioremediation. IMPORTANCE Research is establishing a systems biology view of biological response to Cd stress. It is meaningful to explore whether there is regulatory isomorphy among distantly related organisms. A transcriptomic comparison was done among model microbes, leading to the identification of a conserved cellular model pinpointing the generic strategies utilized by microbes for combating Cd stress. A novel E. coli transporter gene substantially increased yeast’s Cd tolerance. Knowledge on systems understanding of the cellular response to metals provides the basis for developing bioengineering remediation technology.
Collapse
|
8
|
Do THT, Martinoia E, Lee Y, Hwang JU. 2021 update on ATP-binding cassette (ABC) transporters: how they meet the needs of plants. Plant Physiol 2021; 187:1876-1892. [PMID: 35235666 PMCID: PMC8890498 DOI: 10.1093/plphys/kiab193] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 04/10/2021] [Indexed: 05/02/2023]
Abstract
Recent developments in the field of ABC proteins including newly identified functions and regulatory mechanisms expand the understanding of how they function in the development and physiology of plants.
Collapse
Affiliation(s)
- Thanh Ha Thi Do
- Division of Integrative Bioscience and Biotechnology, POSTECH, Pohang, 37673, South Korea
| | - Enrico Martinoia
- Division of Integrative Bioscience and Biotechnology, POSTECH, Pohang, 37673, South Korea
- Department of Plant and Microbial Biology, University Zurich, Zurich 8008, Switzerland
| | - Youngsook Lee
- Division of Integrative Bioscience and Biotechnology, POSTECH, Pohang, 37673, South Korea
- Department of Life Sciences, POSTECH, Pohang 37673, South Korea
| | - Jae-Ung Hwang
- Division of Integrative Bioscience and Biotechnology, POSTECH, Pohang, 37673, South Korea
- Author for communication:
| |
Collapse
|
9
|
Nakano Y, Mitsuda N, Ide K, Mori T, Mira FR, Rosmalawati S, Watanabe N, Suzuki K. Transcriptome analysis of Pará rubber tree (H. brasiliensis) seedlings under ethylene stimulation. BMC Plant Biol 2021; 21:420. [PMID: 34517831 PMCID: PMC8436496 DOI: 10.1186/s12870-021-03196-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 08/28/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Natural rubber (cis-1,4-polyioprene, NR) is an indispensable industrial raw material obtained from the Pará rubber tree (H. brasiliensis). Natural rubber cannot be replaced by synthetic rubber compounds because of the superior resilience, elasticity, abrasion resistance, efficient heat dispersion, and impact resistance of NR. In NR production, latex is harvested by periodical tapping of the trunk bark. Ethylene enhances and prolongs latex flow and latex regeneration. Ethephon, which is an ethylene-releasing compound, applied to the trunk before tapping usually results in a 1.5- to 2-fold increase in latex yield. However, intense mechanical damage to bark tissues by excessive tapping and/or over-stimulation with ethephon induces severe oxidative stress in laticifer cells, which often causes tapping panel dryness (TPD) syndrome. To enhance NR production without causing TPD, an improved understanding of the molecular mechanism of the ethylene response in the Pará rubber tree is required. Therefore, we investigated gene expression in response to ethephon treatment using Pará rubber tree seedlings as a model system. RESULTS After ethephon treatment, 3270 genes showed significant differences in expression compared with the mock treatment. Genes associated with carotenoids, flavonoids, and abscisic acid biosynthesis were significantly upregulated by ethephon treatment, which might contribute to an increase in latex flow. Genes associated with secondary cell wall formation were downregulated, which might be because of the reduced sugar supply. Given that sucrose is an important molecule for NR production, a trade-off may arise between NR production and cell wall formation for plant growth and for wound healing at the tapping panel. CONCLUSIONS Dynamic changes in gene expression occur specifically in response to ethephon treatment. Certain genes identified may potentially contribute to latex production or TPD suppression. These data provide valuable information to understand the mechanism of ethylene stimulation, and will contribute to improved management practices and/or molecular breeding to attain higher yields of latex from Pará rubber trees.
Collapse
Affiliation(s)
- Yoshimi Nakano
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8566, Japan
| | - Nobutaka Mitsuda
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8566, Japan
| | - Kohei Ide
- Bridgestone Corporation, Kodaira, Tokyo, 187-8531, Japan
| | - Teppei Mori
- Bridgestone Corporation, Kodaira, Tokyo, 187-8531, Japan
| | - Farida Rosana Mira
- Laboratory for Biotechnology, Agency for the Assessment and Application of Technology, Build. 630, Puspiptek area, Serpong, Tangerang, Selatan, 15314, Indonesia
| | - Syofi Rosmalawati
- Laboratory for Biotechnology, Agency for the Assessment and Application of Technology, Build. 630, Puspiptek area, Serpong, Tangerang, Selatan, 15314, Indonesia
| | - Norie Watanabe
- Bridgestone Corporation, Kodaira, Tokyo, 187-8531, Japan
| | - Kaoru Suzuki
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8566, Japan.
- Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, 169-8555, Japan.
| |
Collapse
|
10
|
Li T, Xu S, Wu C, Yan S, Wang L. Loss of an ABC transporter in Arabidopsis thaliana confers hypersensitivity to the anti-cancer drug bleomycin. DNA Repair (Amst) 2021; 106:103174. [PMID: 34256304 DOI: 10.1016/j.dnarep.2021.103174] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 07/02/2021] [Accepted: 07/06/2021] [Indexed: 11/24/2022]
Abstract
Bleomycin (BLM) is used as an anti-cancer drug clinically. However, some cancer cells are resistant to BLM, which limits the usage of BLM in chemotherapy. But the underlying mechanism of such resistance is poorly understood. Here we show that the ATP binding cassette (ABC) transporter ABCC3 is required for the BLM-resistance in Arabidopsis. In a genetic screen for ddrm (DNA damage response mutants), we found that loss of ABCC3 confers the hypersensitivity to BLM. In contrast, overexpression of ABCC3 enhances the resistance to BLM. We further found that the expression of ABCC3 is induced by BLM, which is dependent on the protein kinase ATM and the transcription factor SOG1, two master regulators of DNA damage response. Our study revealed that the ABC transporter contributes to BLM-resistance, indicating that the combination of ABC transporter inhibitors and BLM may enhance the efficacy of BLM in cancer therapy.
Collapse
|
11
|
Gao J, Shi Y, Wang W, Wang YH, Yang H, Shi QH, Chen JP, Sun YR, Cai LW. Genome sequencing identified novel mechanisms underlying virescent mutation in upland cotton Gossypiuma hirsutum. BMC Genomics 2021; 22:498. [PMID: 34217203 PMCID: PMC8254239 DOI: 10.1186/s12864-021-07810-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 06/14/2021] [Indexed: 08/26/2023] Open
Abstract
Background Virescent mutation broadly exists in plants and is an ideal experimental material to investigate regulatory mechanisms underlying chlorophyll synthesis, photosynthesis and plant growth. Up to date, the molecular mechanisms in two virescent mutations have been clarified in cottons (Gossypiuma hirsutum). A virescent mutation has been found in the cotton strain Sumian 22, and the underlying molecular mechanisms have been studied. Methods The virescent mutant and wild type (WT) of Sumian 22 were cross-bred, and the F1 population were self-pollinated to calculate the segregation ratio. Green and yellow leaves from F2 populations were subjected to genome sequencing and bulked-segregant analysis was performed to screen mutations. Real-time quantitative PCR (RT-qPCR) were performed to identify genes in relations to chlorophyll synthesis. Intermediate products for chlorophyll synthesis were determined to validate the RT-qPCR results. Results The segregation ratio of green and virescent plants in F2 population complied with 3:1. Compared with WT, a 0.34 Mb highly mutated interval was identified on the chromosome D10 in mutant, which contained 31 genes. Among them, only ABCI1 displayed significantly lower levels in mutant than in WT. Meanwhile, the contents of Mg-protoporphyrin IX, protochlorophyllide, chlorophyll a and b were all significantly lower in mutant than in WT, which were consistent with the inhibited levels of ABCI1. In addition, a mutation from A to T at the -317 bp position from the start codon of ABCI1 was observed in the genome sequence of mutant. Conclusions Inhibited transcription of ABCI1 might be the mechanism causing virescent mutation in Sumian 22 cotton, which reduced the transportation of protoporphyrin IX to plastid, and then inhibited Mg-protoporphyrin IX, Protochlorophyllide and finally chlorophyll synthesis. These results provided novel insights into the molecular mechanisms underlying virescent mutation in cotton. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07810-z.
Collapse
Affiliation(s)
- Jin Gao
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Yang Shi
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Wei Wang
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Yong-Hui Wang
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Hua Yang
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Qing-Hua Shi
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Jian-Ping Chen
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Yan-Ru Sun
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China
| | - Li-Wang Cai
- Jiangsu Coastal Area Institute of Agricultural Sciences/Observation and Experimental Station of Saline Land of Costal Area, Ministry of Agriculture, Yancheng, 224002, Jiangsu, People's Republic of China.
| |
Collapse
|
12
|
Kempthorne CJ, Nielsen AJ, Wilson DC, McNulty J, Cameron RK, Liscombe DK. Metabolite profiling reveals a role for intercellular dihydrocamalexic acid in the response of mature Arabidopsis thaliana to Pseudomonas syringae. Phytochemistry 2021; 187:112747. [PMID: 33823457 DOI: 10.1016/j.phytochem.2021.112747] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 03/14/2021] [Accepted: 03/18/2021] [Indexed: 06/12/2023]
Abstract
The leaf intercellular space is a site of plant-microbe interactions where pathogenic bacteria such as Pseudomonas syringae grow. In Arabidopsis thaliana, the biosynthesis of tryptophan-derived indolic metabolites is induced by P. syringae infection. Using high-resolution mass spectrometry-based profiling and biosynthetic mutants, we investigated the role of indolic compounds and other small molecules in the response of mature Arabidopsis to P. syringae. We observed dihydrocamalexic acid (DHCA), the precursor to the defense-related compound camalexin, accumulating in intercellular washing fluids (IWFs) without further conversion to camalexin. The indolic biosynthesis mutant cyp71a12/cyp71a13 was more susceptible to P. syringae compared to mature wild-type plants displaying age-related resistance (ARR). DHCA and structural analogs inhibit P. syringae growth (MIC ~ 500 μg/mL), but not at concentrations found in IWFs, and DHCA did not inhibit biofilm formation in vitro. However, infiltration of exogenous DHCA enhanced resistance in mature cyp71a12/cyp71a13. These results provide evidence that DHCA derived from CYP71A12 and CYP71A13 activity accumulates in the intercellular space and contributes to the resistance of mature Arabidopsis to P. syringae without directly inhibiting bacterial growth.
Collapse
Affiliation(s)
- Christine J Kempthorne
- Vineland Research and Innovation Centre, 4890 Victoria Ave North Box 4000, Vineland Station, Ontario, L0R 2E0, Canada; McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada; Brock University, 1812 Sir Isaac Brock Way, St Catharines, Ontario, L2S 3A1, Canada.
| | | | - Daniel C Wilson
- McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada
| | - James McNulty
- McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada
| | - Robin K Cameron
- McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada
| | - David K Liscombe
- Vineland Research and Innovation Centre, 4890 Victoria Ave North Box 4000, Vineland Station, Ontario, L0R 2E0, Canada; Brock University, 1812 Sir Isaac Brock Way, St Catharines, Ontario, L2S 3A1, Canada.
| |
Collapse
|
13
|
Yang YH, Wang CJ, Li RF, Yi YJ, Zeng L, Yang H, Zhang CF, Song KY, Guo SJ. Transcriptome-based identification and expression characterization of RgABCC transporters in Rehmannia glutinosa. PLoS One 2021; 16:e0253188. [PMID: 34170906 PMCID: PMC8232422 DOI: 10.1371/journal.pone.0253188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Accepted: 05/31/2021] [Indexed: 11/18/2022] Open
Abstract
ABCC multidrug resistance-associated proteins (ABCCs/MRPs), a subfamily of ABC transporters, are involved in multiple physiological processes. Although these proteins have been characterized in some plants, limited efforts have been made to address their possible roles in Rehmannia glutinosa, a medicinal plant. Here, we scanned R. glutinosa transcriptome sequences and identified 18 RgABCC genes by in silico analysis. Sequence alignment revealed that the RgABCCs were closely phylogenetically related and highly conserved with other plant ABCCs/MRPs. Subcellular localization revealed that most of the RgABCCs were deposited in vacuoles and a few in plasma membranes. Tissue-specific expression of the RgABCCs indicated significant specific accumulation patterns, implicating their roles in the respective tissues. Differential temporal expression patterns of the RgABCCs exhibited their potential roles during root development. Various abiotic stress and hormone treatment experiments indicated that some RgABCCs could be transcriptionally regulated in roots. Furthermore, the transcription of several RgABCCs in roots was strongly activated by cadmium (Cd), suggesting possible roles under heavy metal stresses. Functional analysis of RgABCC1 heterologous expression revealed that it may increase the tolerance to Cd in yeast, implying its Cd transport activity. Our study provides a detailed inventory and molecular characterization of the RgABCCs and valuable information for exploring their functions in R. glutinosa.
Collapse
Affiliation(s)
- Yan Hui Yang
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
- * E-mail:
| | - Chao Jie Wang
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Rui Fang Li
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Yan Jie Yi
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Lei Zeng
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Heng Yang
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Chang Fu Zhang
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Kai Yi Song
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| | - Si Jiao Guo
- College of Bioengineering, Henan University of Technology, Zhengzhou High-technology Zero, Henan Province, 450001, China
| |
Collapse
|
14
|
Aubry S, Christ B, Kräutler B, Martinoia E, Thomas H, Zipfel C. An evergreen mind and a heart for the colors of fall. J Exp Bot 2021; 72:4625-4633. [PMID: 33860301 PMCID: PMC8219035 DOI: 10.1093/jxb/erab162] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Accepted: 04/11/2021] [Indexed: 06/01/2023]
Abstract
With the finest biochemical and molecular approaches, convincing explorative strategies, and long-term vision, Stefan Hörtensteiner succeeded in elucidating the biochemical pathway responsible for chlorophyll degradation. After having contributed to the identification of key chlorophyll degradation products in the course of the past 25 years, he gradually identified and characterized most of the crucial players in the PAO/phyllobilin degradation pathway of chlorophyll. He was one of the brightest plant biochemists of his generation, and his work opened doors to a better understanding of plant senescence, tetrapyrrole homeostasis, and their complex regulation. He sadly passed away on 5 December 2020, aged 57.
Collapse
Affiliation(s)
- Sylvain Aubry
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| | - Bastien Christ
- Berries and Medicinal Plants, Plant Production Systems, Agroscope, Conthey, Switzerland
| | - Bernhard Kräutler
- Institute of Organic Chemistry & Center of Molecular Biosciences, University of Innsbruck, Innsbruck, Austria
| | - Enrico Martinoia
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| | - Howard Thomas
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth, Wales, UK
| | - Cyril Zipfel
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| |
Collapse
|
15
|
Hao G, McCormick S, Tiley H, Usgaard T. Detoxification and Excretion of Trichothecenes in Transgenic Arabidopsisthaliana Expressing Fusarium graminearum Trichothecene 3- O-acetyltransferase. Toxins (Basel) 2021; 13:320. [PMID: 33946742 DOI: 10.3390/toxins13050320] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 04/27/2021] [Indexed: 11/16/2022] Open
Abstract
Fusarium graminearum, the causal agent of Fusarium head blight (FHB), produces trichothecenes including deoxynivalenol (DON), nivalenol (NIV), and 3,7,15-trihydroxy-12,13-epoxytrichothec-9-ene (NX-3). These toxins contaminate grains and cause profound health problems in humans and animals. To explore exploiting a fungal self-protection mechanism in plants, we examined the ability of F. graminearum trichothecene 3-O-acetyltransferase (FgTri101) to detoxify several key trichothecenes produced by F. graminearum: DON, 15-ADON, NX-3, and NIV. FgTri101 was cloned from F. graminearum and expressed in Arabidopsis plants. We compared the phytotoxic effects of purified DON, NIV, and NX-3 on the root growth of transgenic Arabidopsis expressing FgTri101. Compared to wild type and GUS controls, FgTri101 transgenic Arabidopsis plants displayed significantly longer root length on media containing DON and NX-3. Furthermore, we confirmed that the FgTri101 transgenic plants acetylated DON to 3-ADON, 15-ADON to 3,15-diADON, and NX-3 to NX-2, but did not acetylate NIV. Approximately 90% of the converted toxins were excreted into the media. Our study indicates that transgenic Arabidopsis expressing FgTri101 can provide plant protection by detoxifying trichothecenes and excreting the acetylated toxins out of plant cells. Characterization of plant transporters involved in trichothecene efflux will provide novel targets to reduce FHB and mycotoxin contamination in economically important plant crops.
Collapse
|
16
|
Chaudhry AH, Nayab S, Hussain SB, Ali M, Pan Z. Current Understandings on Magnesium Deficiency and Future Outlooks for Sustainable Agriculture. Int J Mol Sci 2021; 22:1819. [PMID: 33673043 PMCID: PMC7917752 DOI: 10.3390/ijms22041819] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/27/2021] [Accepted: 01/28/2021] [Indexed: 11/24/2022] Open
Abstract
The productivity of agricultural produce is fairly dependent on the availability of nutrients and efficient use. Magnesium (Mg2+) is an essential macronutrient of living cells and is the second most prevalent free divalent cation in plants. Mg2+ plays a role in several physiological processes that support plant growth and development. However, it has been largely forgotten in fertilization management strategies to increase crop production, which leads to severe reductions in plant growth and yield. In this review, we discuss how the Mg2+ shortage induces several responses in plants at different levels: morphological, physiological, biochemical and molecular. Additionally, the Mg2+ uptake and transport mechanisms in different cellular organelles and the role of Mg2+ transporters in regulating Mg2+ homeostasis are also discussed. Overall, in this review, we critically summarize the available information about the responses of Mg deficiency on plant growth and development, which would facilitate plant scientists to create Mg2+-deficiency-resilient crops through agronomic and genetic biofortification.
Collapse
Affiliation(s)
- Ahmad Hassan Chaudhry
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China;
| | - Shafa Nayab
- Department of Horticulture, Muhammad Nawaz Shareef University of Agriculture, Multan 60000, Pakistan; (S.N.); (S.B.H.)
| | - Syed Bilal Hussain
- Department of Horticulture, Muhammad Nawaz Shareef University of Agriculture, Multan 60000, Pakistan; (S.N.); (S.B.H.)
| | - Muqarrab Ali
- Department of Agronomy, Muhammad Nawaz Shareef University of Agriculture, Multan 60000, Pakistan;
| | - Zhiyong Pan
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China;
| |
Collapse
|
17
|
Shitan N, Yazaki K. Dynamism of vacuoles toward survival strategy in plants. Biochimica et Biophysica Acta (BBA) - Biomembranes 2020; 1862:183127. [DOI: 10.1016/j.bbamem.2019.183127] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 10/27/2019] [Accepted: 11/01/2019] [Indexed: 02/08/2023]
|
18
|
Feng T, He X, Zhuo R, Qiao G, Han X, Qiu W, Chi L, Zhang D, Liu M. Identification and functional characterization of ABCC transporters for Cd tolerance and accumulation in Sedum alfredii Hance. Sci Rep 2020; 10:20928. [PMID: 33262396 PMCID: PMC7708633 DOI: 10.1038/s41598-020-78018-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 11/09/2020] [Indexed: 12/20/2022] Open
Abstract
Cd is one of the potential toxic elements (PTEs) exerting great threats on the environment and living organisms and arising extensive attentions worldwide. Sedum alfredii Hance, a Cd hyperaccumulator, is of great importance in studying the mechanisms of Cd hyperaccumulation and has potentials for phytoremediation. ATP-binding cassette sub-family C (ABCC) belongs to the ABC transporter family, which is deemed to closely associate with multiple physiological processes including cellular homeostasis, metal detoxification, and transport of metabolites. In the present work, ten ABCC proteins were identified in S. alfredii Hance, exhibiting uniform domain structure and divergently clustering with those from Arabidopsis. Tissue-specific expression analysis indicated that some SaABCC genes had significantly higher expression in roots (Sa23221 and Sa88F144), stems (Sa13F200 and Sa14F98) and leaves (Sa13F200). Co-expression network analysis using these five SaABCC genes as hub genes produced two clades harboring different edge genes. Transcriptional expression profiles responsive to Cd illustrated a dramatic elevation of Sa14F190 and Sa18F186 genes. Heterologous expression in a Cd-sensitive yeast cell line, we confirmed the functions of Sa14F190 gene encoding ABCC in Cd accumulation. Our study performed a comprehensive analysis of ABCCs in S. alfredii Hance, firstly mapped their tissue-specific expression patterns responsive to Cd stress, and characterized the roles of Sa14F190 genes in Cd accumulation.
Collapse
Affiliation(s)
- Tongyu Feng
- Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, 311400, People's Republic of China
| | - Xuelian He
- Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, 311400, People's Republic of China
| | - Renying Zhuo
- Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, 311400, People's Republic of China
| | - Guirong Qiao
- Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, 311400, People's Republic of China
| | - Xiaojiao Han
- Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, 311400, People's Republic of China
| | - Wenmin Qiu
- Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, 311400, People's Republic of China
| | - Linfeng Chi
- School of Basic Medical Sciences, Zhejiang Chinese Medical University, Hangzhou, 310053, People's Republic of China
| | - Dayi Zhang
- School of Environment, Tsinghua University, Beijing, 100084, People's Republic of China.
| | - Mingying Liu
- School of Basic Medical Sciences, Zhejiang Chinese Medical University, Hangzhou, 310053, People's Republic of China.
| |
Collapse
|
19
|
Sylvestre-Gonon E, Schwartz M, Girardet JM, Hecker A, Rouhier N. Is there a role for tau glutathione transferases in tetrapyrrole metabolism and retrograde signalling in plants? Philos Trans R Soc Lond B Biol Sci 2020; 375:20190404. [PMID: 32362257 DOI: 10.1098/rstb.2019.0404] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
In plants, tetrapyrrole biosynthesis occurs in chloroplasts, the reactions being catalysed by stromal and membrane-bound enzymes. The tetrapyrrole moiety is a backbone for chlorophylls and cofactors such as sirohaems, haems and phytochromobilins. Owing to this diversity, the potential cytotoxicity of some precursors and the associated synthesis costs, a tight control exists to adjust the demand and the fluxes for each molecule. After synthesis, haems and phytochromobilins are incorporated into proteins found in other subcellular compartments. However, there is only very limited information about the chaperones and membrane transporters involved in the trafficking of these molecules. After summarizing evidence indicating that glutathione transferases (GST) may be part of the transport and/or degradation processes of porphyrin derivatives, we provide experimental data indicating that tau glutathione transferases (GSTU) bind protoporphyrin IX and haem moieties and use structural modelling to identify possible residues responsible for their binding in the active site hydrophobic pocket. Finally, we discuss the possible roles associated with the binding, catalytic transformation (i.e. glutathione conjugation) and/or transport of tetrapyrroles by GSTUs, considering their subcellular localization and capacity to interact with ABC transporters. This article is part of the theme issue 'Retrograde signalling from endosymbiotic organelles'.
Collapse
Affiliation(s)
| | | | | | - Arnaud Hecker
- Université de Lorraine, INRAE, IAM, 54000 Nancy, France
| | | |
Collapse
|
20
|
Ismael MA, Elyamine AM, Moussa MG, Cai M, Zhao X, Hu C. Cadmium in plants: uptake, toxicity, and its interactions with selenium fertilizers. Metallomics 2020; 11:255-277. [PMID: 30632600 DOI: 10.1039/c8mt00247a] [Citation(s) in RCA: 224] [Impact Index Per Article: 56.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Cd is the third major contaminant of greatest hazard to the environment after mercury and lead and is considered as the only metal that poses health risks to both humans and animals at plant tissue concentrations that are generally not phytotoxic. Cd accumulation in plant shoots depends on Cd entry through the roots, sequestration within root vacuoles, translocation in the xylem and phloem, and Cd dilution within the plant shoot throughout its growth. Several metal transporters, processes, and channels are involved from the first step of Cd reaching the root cells and until its final accumulation in the edible parts of the plant. It is hard to demonstrate one step as the pivotal factor to decide the Cd tolerance or accumulation ability of plants since the role of a specific transporter/process varies among plant species and even cultivars. In this review, we discuss the sources of Cd pollutants, Cd toxicity to plants, and mechanisms of Cd uptake and redistribution in plant tissues. The metal transporters involved in Cd transport within plant tissues are also discussed and how their manipulation can control Cd uptake and/or translocation. Finally, we discuss the beneficial effects of Se on plants under Cd stress, and how it can minimize or mitigate Cd toxicity in plants.
Collapse
Affiliation(s)
- Marwa A Ismael
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Research Center of Trace Elements, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China.
| | | | | | | | | | | |
Collapse
|
21
|
Tan X, Li K, Wang Z, Zhu K, Tan X, Cao J. A Review of Plant Vacuoles: Formation, Located Proteins, and Functions. Plants (Basel) 2019; 8:plants8090327. [PMID: 31491897 PMCID: PMC6783984 DOI: 10.3390/plants8090327] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 08/22/2019] [Accepted: 09/04/2019] [Indexed: 12/19/2022]
Abstract
Vacuoles, cellular membrane-bound organelles, are the largest compartments of cells, occupying up to 90% of the volume of plant cells. Vacuoles are formed by the biosynthetic and endocytotic pathways. In plants, the vacuole is crucial for growth and development and has a variety of functions, including storage and transport, intracellular environmental stability, and response to injury. Depending on the cell type and growth conditions, the size of vacuoles is highly dynamic. Different types of cell vacuoles store different substances, such as alkaloids, protein enzymes, inorganic salts, sugars, etc., and play important roles in multiple signaling pathways. Here, we summarize vacuole formation, types, vacuole-located proteins, and functions.
Collapse
Affiliation(s)
- Xiaona Tan
- Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
| | - Kaixia Li
- Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
| | - Zheng Wang
- Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
| | - Keming Zhu
- Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
| | - Xiaoli Tan
- Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
| | - Jun Cao
- Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
| |
Collapse
|
22
|
Wang H, Liu Y, Peng Z, Li J, Huang W, Liu Y, Wang X, Xie S, Sun L, Han E, Wu N, Luo K, Wang B. Ectopic Expression of Poplar ABC Transporter PtoABCG36 Confers Cd Tolerance in Arabidopsis thaliana. Int J Mol Sci 2019; 20:ijms20133293. [PMID: 31277496 PMCID: PMC6652139 DOI: 10.3390/ijms20133293] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 06/30/2019] [Accepted: 07/01/2019] [Indexed: 11/16/2022] Open
Abstract
Cadmium (Cd) is one of the most toxic heavy metals for plant growth in soil. ATP-binding cassette (ABC) transporters play important roles in biotic and abiotic stresses. However, few ABC transporters have been characterized in poplar. In this study, we isolated an ABC transporter gene PtoABCG36 from Populus tomentosa. The PtoABCG36 transcript can be detected in leaves, stems and roots, and the expression in the root was 3.8 and 2 times that in stems and leaves, respectively. The PtoABCG36 expression was induced and peaked at 12 h after exposure to Cd stress. Transient expression of PtoABCG36 in tobacco showed that PtoABCG36 is localized at the plasma membrane. When overexpressed in yeast and Arabidopsis, PtoABCG36 could decrease Cd accumulation and confer higher Cd tolerance in transgenic lines than in wild-type (WT) lines. Net Cd2+ efflux measurements showed a decreasing Cd uptake in transgenic Arabidopsis roots than WT. These results demonstrated that PtoABCG36 functions as a cadmium extrusion pump participating in enhancing tolerance to Cd through decreasing Cd content in plants, which provides a promising way for making heavy metal tolerant poplar by manipulating ABC transporters in cadmium polluted areas.
Collapse
Affiliation(s)
- Huihong Wang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Yuanyuan Liu
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Zaihui Peng
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Jianchun Li
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Weipeng Huang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Yan Liu
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Xuening Wang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Shengli Xie
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Liping Sun
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Erqin Han
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Nengbiao Wu
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Keming Luo
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China
| | - Bangjun Wang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Key Laboratory of Eco-Environments in Three Gorges Reservoir Region (Ministry of Education), College of Life Sciences, Southwest University, Chongqing 400715, China.
| |
Collapse
|
23
|
Zhao N, Yan Y, Luo Y, Zou N, Liu W, Wang J. Unravelling mesosulfuron-methyl phytotoxicity and metabolism-based herbicide resistance in Alopecurus aequalis: Insight into regulatory mechanisms using proteomics. Sci Total Environ 2019; 670:486-497. [PMID: 30904660 DOI: 10.1016/j.scitotenv.2019.03.089] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2018] [Revised: 03/05/2019] [Accepted: 03/06/2019] [Indexed: 06/09/2023]
Abstract
Non-target-site based resistance (NTSR), a poorly understood multigenic trait, has evolved as the greatest threat to crop production worldwide, by endowing weed plants an unpredictable pattern of resistance to herbicides. Our recent work with multiple-herbicide-resistant shortawn foxtail (Alopecurus aequalis Sobol.) biotype has preliminary indicated that cytochrome P450s-involved enhanced rate of mesosulfuron-methyl metabolism may involve in the NTSR. Here by further determining the differences in glutathione S-transferase (GST) activity and uptake and metabolic rates of mesosulfuron between resistant (R) and susceptible (S) A. aequalis plants, and associating them with endogenous differently regulated proteins (DEPs) identified from combinational proteomics analyses, we provided direct evidences on the enhanced herbicide degradation in resistant plants. Subsequently, the physiological phenotypes of photosynthesis, chlorophyll fluorescence, and antioxidation were compared between R and S plants and linked with correlative DEPs, indicating a series of key pathways including solar energy capture, photosynthetic electron transport, redox homeostasis, carbon fixation, photorespiration, and reactive oxygen species scavenging in susceptible plants were broken or severely damaged by mesosulfuron stress. In comparison, resistant plants have evolved enhanced herbicide degradation to minimize the accumulation of mesosulfuron and protect the photosynthesis and ascorbate-glutathione cycle against the adverse effects of chemical injury, giving A. aequalis plants a NTSR phenotype. Additionally, three key proteins respectively annotated as esterase, GST, and glucosyltransferase were identified and enabled as potential transcriptional markers for quick diagnosing the metabolic mesosulfuron resistance in A. aequalis species.
Collapse
Affiliation(s)
- Ning Zhao
- College of Plant Protection, Shandong Agricultural University, Tai'an, China; Key Laboratory of Pesticide Toxicology and Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, China
| | - Yanyan Yan
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, China
| | - Yongli Luo
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, Tai'an, China
| | - Nan Zou
- College of Plant Protection, Shandong Agricultural University, Tai'an, China; Key Laboratory of Pesticide Toxicology and Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, China
| | - Weitang Liu
- College of Plant Protection, Shandong Agricultural University, Tai'an, China; Key Laboratory of Pesticide Toxicology and Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, China
| | - Jinxin Wang
- College of Plant Protection, Shandong Agricultural University, Tai'an, China; Key Laboratory of Pesticide Toxicology and Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, China.
| |
Collapse
|
24
|
Tuzet A, Rahantaniaina MS, Noctor G. Analyzing the Function of Catalase and the Ascorbate-Glutathione Pathway in H 2O 2 Processing: Insights from an Experimentally Constrained Kinetic Model. Antioxid Redox Signal 2019; 30:1238-1268. [PMID: 30044135 DOI: 10.1089/ars.2018.7601] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
SIGNIFICANCE Plant stress involves redox signaling linked to reactive oxygen species such as hydrogen peroxide (H2O2), which can be generated at high rates in photosynthetic cells. The systems that process H2O2 include catalase (CAT) and the ascorbate-glutathione pathway, but interactions between them remain unclear. Modeling can aid interpretation and pinpoint areas for investigation. Recent Advances: Based on emerging data and concepts, we introduce a new experimentally constrained kinetic model to analyze interactions between H2O2, CAT, ascorbate, glutathione, and NADPH. The sensitivity points required for accurate simulation of experimental observations are analyzed, and the implications for H2O2-linked redox signaling are discussed. CRITICAL ISSUES We discuss several implications of the modeled results, in particular the following. (i) CAT and ascorbate peroxidase can share the load in H2O2 processing even in optimal conditions. (ii) Intracellular H2O2 concentrations more than the low μM range may rarely occur. (iii) Ascorbate redox turnover is largely independent of glutathione until ascorbate peroxidation exceeds a certain value. (iv) NADPH availability may determine glutathione redox status through its influence on monodehydroascorbate reduction. (v) The sensitivity of glutathione status to oxidative stress emphasizes its potential suitability as a sensor of increased H2O2. FUTURE DIRECTIONS Important future questions include the roles of other antioxidative systems in interacting with CAT and the ascorbate-glutathione pathway as well as the nature and significance of processes that achieve redox exchange between different subcellular compartments. Progress in these areas is likely to be favored by integrating kinetic modeling analyses into experimentally based programs, allowing each approach to inform the other.
Collapse
Affiliation(s)
- Andrée Tuzet
- 1 Unité Mixte de Recherche ECOSYS/Pôle BIOCLIMATOLOGIE, INRA-AgroParisTech, Thiverval-Grignon, France
| | - Marie-Sylviane Rahantaniaina
- 1 Unité Mixte de Recherche ECOSYS/Pôle BIOCLIMATOLOGIE, INRA-AgroParisTech, Thiverval-Grignon, France.,2 Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, Université Paris-Sud, CNRS, INRA, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, Orsay, France
| | - Graham Noctor
- 2 Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, Université Paris-Sud, CNRS, INRA, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, Orsay, France
| |
Collapse
|
25
|
Dong Q, Magwanga RO, Cai X, Lu P, Nyangasi Kirungu J, Zhou Z, Wang X, Wang X, Xu Y, Hou Y, Wang K, Peng R, Ma Z, Liu F. RNA-Sequencing, Physiological and RNAi Analyses Provide Insights into the Response Mechanism of the ABC-Mediated Resistance to Verticillium dahliae Infection in Cotton. Genes (Basel) 2019; 10:E110. [PMID: 30717226 PMCID: PMC6410047 DOI: 10.3390/genes10020110] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Revised: 01/22/2019] [Accepted: 01/24/2019] [Indexed: 02/08/2023] Open
Abstract
Verticillium wilt that is caused by Verticillium dahliae, does result in massive annual yield losses and fiber quality decline in cotton. Control by conventional mechanisms is not possible due to a wide host range and the longevity of dormant fungi in the soil in the case of absence of a suitable host. Plants have developed various mechanisms to boost their immunity against various diseases, and one is through the induction of various genes. In this research, we carried out RNA sequencing and then identified the members of the adenosine triphosphate (ATP)-binding cassette (ABC) proteins to be critical in enhancing resistance to V. dahliae infection. A total of 166 proteins that are encoded by the ABC genes were identified in Gossypium raimondii with varying physiochemical properties. A novel ABC gene, Gorai.007G244600 (ABCF5), was found to be highly upregulated, and its homolog in the tetraploid cotton Gh_D11G3432 (ABCF5), was then silenced through virus induced gene silencing (VIGS) in G. hirsutum, tetraploid upland cotton. The mutant cotton seedlings ability to tolerate V. dahliae infection was significantly reduced. Based on the evaluation of oxidant enzymes, hydrogen peroxide (H₂O₂) and malondialdehyde (MDA) showed significantly increased levels in the leaves of the mutant compared to the wild type. In addition, antioxidant enzymes, peroxidase (POD), catalase (CAT), and superoxide dismutase (SOD) concentrations were reduced in the mutant cotton leaves after treatment with V. dahliae fungi as compared to the wild type. Moreover, expression levels of the biotic stress genes, cotton polyamine oxidase (GhPAO), cotton ribosomal protein L18 (GhRPL18), and cotton polygalacturonase-inhibiting protein-1 (GhPGIP1), were all downregulated in the mutant but they were highly upregulated in the various tissues of the wild cotton seedlings. This research has shown that ABC genes could play an important role in enhancing the immunity of cotton to V. dahliae infection, and thus can be explored in developing more resilient cotton genotypes with improved resistance to V. dahliae infection in cotton.
Collapse
Affiliation(s)
- Qi Dong
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
- College of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources of Ministry of Education, Baoding, Hebei, 071001, China.
| | - Richard Odongo Magwanga
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
- School of Biological and Physical Sciences (SBPS), Main Campus, Jaramogi Oginga Odinga University of Science and Technology (JOOUST), Main Campus, P.O. Bondo, Box 210-40601, Kenya.
| | - Xiaoyan Cai
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Pu Lu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Joy Nyangasi Kirungu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Zhongli Zhou
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Xingfen Wang
- College of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources of Ministry of Education, Baoding, Hebei, 071001, China.
| | - Xingxing Wang
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Yanchao Xu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Yuqing Hou
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Kunbo Wang
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| | - Renhai Peng
- Biological and Food Engineering, Anyang Institute of technology, Anyang 455000, Henan, China.
| | - Zhiying Ma
- College of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources of Ministry of Education, Baoding, Hebei, 071001, China.
| | - Fang Liu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan, 455000, China.
| |
Collapse
|
26
|
Halimaa P, Blande D, Baltzi E, Aarts MGM, Granlund L, Keinänen M, Kärenlampi SO, Kozhevnikova AD, Peräniemi S, Schat H, Seregin IV, Tuomainen M, Tervahauta AI. Transcriptional effects of cadmium on iron homeostasis differ in calamine accessions of Noccaea caerulescens. Plant J 2019; 97:306-320. [PMID: 30288820 DOI: 10.1111/tpj.14121] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Revised: 09/20/2018] [Accepted: 09/24/2018] [Indexed: 05/26/2023]
Abstract
Calamine accessions of the zinc/cadmium/nickel hyperaccumulator, Noccaea caerulescens, exhibit striking variation in foliar cadmium accumulation in nature. The Ganges accession (GA) from Southern France displays foliar cadmium hyperaccumulation (>1000 μg g-1 DW), whereas the accession La Calamine (LC) from Belgium, with similar local soil metal composition, does not (<100 μg g-1 DW). All calamine accessions are cadmium hypertolerant. To find out the differences between LC and GA in their basic adaptation mechanisms, we bypassed the cadmium excluding phenotype of LC by exposing the plants to 50 μm cadmium in hydroponics, achieving equal cadmium accumulation in the shoots. The iron content increased in the roots of both accessions. GA exhibited significant decreases in manganese and zinc contents in the roots and shoots, approaching those in LC. Altogether 702 genes responded differently to cadmium exposure between the accessions, 157 and 545 in the roots and shoots, respectively. Cadmium-exposed LC showed a stress response and had decreased levels of a wide range of photosynthesis-related transcripts. GA showed less changes, mainly exhibiting an iron deficiency-like response. This included increased expression of genes encoding five iron deficiency-regulated bHLH transcription factors, ferric reduction oxidase FRO2, iron transporters IRT1 and OPT3, and nicotianamine synthase NAS1, and decreased expression of genes encoding ferritins and NEET (a NEET family iron-sulfur protein), which is possibly involved in iron transfer, distribution and/or management. The function of the IRT1 gene in the accessions was compared. We conclude that the major difference between the two accessions is in the way they cope with iron under cadmium exposure.
Collapse
Affiliation(s)
- Pauliina Halimaa
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Daniel Blande
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Erol Baltzi
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Mark G M Aarts
- Laboratory of Genetics, Wageningen University and Research, P.O. Box 16, 6700 AH, Wageningen, The Netherlands
| | - Lars Granlund
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Markku Keinänen
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Sirpa O Kärenlampi
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Anna D Kozhevnikova
- Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, ul. Botanicheskaya 35, Moscow, 127276, Russia
| | - Sirpa Peräniemi
- School of Pharmacy, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Henk Schat
- Laboratory of Genetics, Wageningen University and Research, P.O. Box 16, 6700 AH, Wageningen, The Netherlands
- Institute of Ecological Science, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
| | - Ilya V Seregin
- Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, ul. Botanicheskaya 35, Moscow, 127276, Russia
| | - Marjo Tuomainen
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| | - Arja I Tervahauta
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70210, Kuopio, Finland
| |
Collapse
|
27
|
Landa P, Prerostova S, Langhansova L, Marsik P, Vankova R, Vanek T. Transcriptomic response of Arabidopsis thaliana roots to naproxen and praziquantel. Ecotoxicol Environ Saf 2018; 166:301-310. [PMID: 30273854 DOI: 10.1016/j.ecoenv.2018.09.081] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Revised: 08/30/2018] [Accepted: 09/19/2018] [Indexed: 06/08/2023]
Abstract
Exposition to pharmaceutical compounds released to the environment is considered as a potential risk for various organisms. We exposed Arabidopsis thaliana plants to naproxen (NAP) and praziquantel (PZQ) in 5 µM concentration for 2 days and recorded transcriptomic response in their roots with the aim to estimate ecotoxicity and to identify gene candidates potentially involved in metabolism of both compounds. Nonsteroidal anti-inflammatory drug NAP up-regulated 105 and down-regulated 29 genes (p-value ≤ 0.1, fold change ≥ 2), while anthelmintic PZQ up-regulated 389 and down-regulated 353 genes with more rigorous p-value ≤ 0.001 (fold change ≥ 2). High number of up-regulated genes coding for heat shock proteins and other genes involved in response to biotic and abiotic stresses as well as down-regulation of genes involved in processes such as cell proliferation, transcription and water transport indicates serious negative effect of PZQ. NAP up-regulated mostly genes involved in various biological processes and signal transduction and down-regulated mainly genes involved in signal transduction and electron transport or energy pathways. Further, two cytochrome P450s (demethylation) and one methyltransferase (methylation of carboxyl group) were identified as candidates for phase I and several glutathione- and glycosyltransferases (conjugation) for phase II of NAP metabolism. Cytochrome P450s, glutathione and glycosyltransferases seem to play role also in metabolism of PZQ. Up-regulation of several ABC and MATE transporters by NAP and PZQ indicated their role in transport of both compounds.
Collapse
Affiliation(s)
- Premysl Landa
- Laboratory of Plant Biotechnologies, Institute of Experimental Botany, Czech Academy of Sciences, Prague 6, Lysolaje, Czech Republic
| | - Sylva Prerostova
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, Prague 6, Lysolaje, Czech Republic
| | - Lenka Langhansova
- Laboratory of Plant Biotechnologies, Institute of Experimental Botany, Czech Academy of Sciences, Prague 6, Lysolaje, Czech Republic
| | - Petr Marsik
- Laboratory of Plant Biotechnologies, Institute of Experimental Botany, Czech Academy of Sciences, Prague 6, Lysolaje, Czech Republic.
| | - Radomira Vankova
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, Prague 6, Lysolaje, Czech Republic
| | - Tomas Vanek
- Laboratory of Plant Biotechnologies, Institute of Experimental Botany, Czech Academy of Sciences, Prague 6, Lysolaje, Czech Republic.
| |
Collapse
|
28
|
Abstract
Farmland cadmium (Cd) contamination has adverse impacts on both wheat grain yield and people’s well-being through food consumption. Safe farming using low-Cd cultivars has been proposed as a promising approach to address the farmland Cd pollution problem. To date, several dozen low-Cd wheat cultivars have been screened worldwide based on a Cd inhibition test, representing candidates for wheat Cd minimization. Unfortunately, the breeding of low-Cd wheat cultivars with desired traits or enhanced Cd exclusion has not been extensively explored. Moreover, the wheat Cd inhibition test for variety screening and conventional breeding is expensive and time-consuming. As an alternative, low-Cd wheat cultivars that were developed with molecular genetics and breeding approaches can be promising, typically by the association of marker-assisted selection (MAS) with conventional breeding practices. In this review, we provide a synthetics view of the background and knowledge basis for the breeding of low-Cd wheat cultivars.
Collapse
|
29
|
Urbancsok J, Bones AM, Kissen R. Arabidopsis mutants impaired in glutathione biosynthesis exhibit higher sensitivity towards the glucosinolate hydrolysis product allyl-isothiocyanate. Sci Rep 2018; 8:9809. [PMID: 29955088 DOI: 10.1038/s41598-018-28099-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 06/15/2018] [Indexed: 11/16/2022] Open
Abstract
Upon tissue damage the plant secondary metabolites glucosinolates can generate various hydrolysis products, including isothiocyanates (ITCs). Their role in plant defence against insects and pest and their potential health benefits have been well documented, but our knowledge regarding the endogenous molecular mechanisms of their effect in plants is limited. Here we investigated the effect of allyl-isothiocyanate (AITC) on Arabidopsis thaliana mutants impaired in homeostasis of the low-molecular weight thiol glutathione. We show that glutathione is important for the AITC-induced physiological responses, since mutants deficient in glutathione biosynthesis displayed a lower biomass and higher root growth inhibition than WT seedlings. These mutants were also more susceptible than WT to another ITC, sulforaphane. Sulforaphane was however more potent in inhibiting root growth than AITC. Combining AITC with the glutathione biosynthesis inhibitor L-buthionine-sulfoximine (BSO) led to an even stronger phenotype than observed for the single treatments. Furthermore, transgenic plants expressing the redox-sensitive fluorescent biomarker roGFP2 indicated more oxidative conditions during AITC treatment. Taken together, we provide genetic evidence that glutathione plays an important role in AITC-induced growth inhibition, although further studies need to be conducted to reveal the underlying mechanisms.
Collapse
|
30
|
Abstract
Increases in ambient temperatures have been a severe threat to crop production in many countries around the world under climate change. Chloroplasts serve as metabolic centers and play a key role in physiological adaptive processes to heat stress. In addition to expressing heat shock proteins that protect proteins from heat-induced damage, metabolic reprogramming occurs during adaptive physiological processes in chloroplasts. Heat stress leads to inhibition of plant photosynthetic activity by damaging key components functioning in a variety of metabolic processes, with concomitant reductions in biomass production and crop yield. In this review article, we will focus on events through extensive and transient metabolic reprogramming in response to heat stress, which included chlorophyll breakdown, generation of reactive oxygen species (ROS), antioxidant defense, protein turnover, and metabolic alterations with carbon assimilation. Such diverse metabolic reprogramming in chloroplasts is required for systemic acquired acclimation to heat stress in plants.
Collapse
Affiliation(s)
- Qing-Long Wang
- The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
| | - Juan-Hua Chen
- The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
| | - Ning-Yu He
- The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
| | - Fang-Qing Guo
- The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
| |
Collapse
|
31
|
Abstract
Chlorophyll breakdown is one of the most obvious signs of leaf senescence and fruit ripening. The resulting yellowing of leaves can be observed every autumn, and the color change of fruits indicates their ripening state. During these processes, chlorophyll is broken down in a multistep pathway, now termed the 'PAO/phyllobilin' pathway, acknowledging the core enzymatic breakdown step catalysed by pheophorbide a oxygenase, which determines the basic linear tetrapyrrole structure of the products of breakdown that are now called 'phyllobilins'. This review provides an update on the PAO/phyllobilin pathway, and focuses on recent biochemical and molecular progress in understanding phyllobilin-modifying reactions as the basis for phyllobilin diversity, on the evolutionary diversity of the pathway, and on the transcriptional regulation of the pathway genes.
Collapse
Affiliation(s)
- Benke Kuai
- State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Fudan University, Shanghai, China
| | - Junyi Chen
- State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Fudan University, Shanghai, China
| | - Stefan Hörtensteiner
- Institute of Plant and Microbial Biology, University of Zurich, Zollikerstrasse, Zurich, Switzerland
| |
Collapse
|
32
|
Subramanian S, Schnoor JL, Van Aken B. Effects of Polychlorinated Biphenyls (PCBs) and Their Hydroxylated Metabolites (OH-PCBs) on Arabidopsis thaliana. Environ Sci Technol 2017; 51:7263-7270. [PMID: 28541669 PMCID: PMC5772893 DOI: 10.1021/acs.est.7b01538] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Plants metabolize polychlorinated biphenyls (PCBs) into hydroxylated derivatives (OH-PCBs), which are sometimes more toxic than the parent PCBs. The objective of this research was to compare the toxicity of a suite of PCBs and OH-PCBs toward the model plant, Arabidopsis thaliana. While parent PCBs and higher-chlorinated OH-PCBs exhibited a low or nondetectable toxicity, lower-chlorinated OH-PCBs significantly inhibited the germination rate and plant growth, with inhibition concentration 50% (IC50) ranging from 1.6 to 12.0 mg L-1. The transcriptomic response of A. thaliana to 2,5-dichlorobiphenyl (2,5-DCB), and its OH metabolite, 4'-OH-2,5-DCB, was then examined using whole-genome expression microarrays (Affymetrix). Exposure to 2,5-DCB and 4'-OH-2,5-DCB resulted in different expression patterns, with the former leading to enrichment of genes involved in response to toxic stress and detoxification functions. Exposure to 2,5-DCB induced multiple xenobiotic response genes, such as cytochrome P-450 and glutathione S-transferases, potentially involved in the PCB metabolism. On the contrary, exposure to both compounds resulted in the down-regulation of genes involved in stresses not directly related to toxicity. Unlike its OH derivative, 2,5-DCB was shown to induce a transcriptomic profile similar to plant safeners, which are nontoxic chemicals stimulating detoxification pathways in plants. The differentiated induction of detoxification enzymes by 2,5-DCB may explain its lower phytotoxicity compared to 4'-OH-2,5-DCB.
Collapse
Affiliation(s)
- Srishty Subramanian
- Department of Civil & Environmental Engineering, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Jerald L. Schnoor
- Department of Civil & Environmental Engineering, The University of Iowa, Iowa City, Iowa 52242, United States
| | - Benoit Van Aken
- Department of Civil & Environmental Engineering, Temple University, Philadelphia, Pennsylvania 19122, United States
- Corresponding Author, . Phone: 215-204-7087. Fax: 215-204-4696
| |
Collapse
|
33
|
Abstract
The chemical composition of root exudates strongly impacts the interactions of plants with microorganisms in the rhizosphere and the efficiency of nutrient acquisition. Exudation of metabolites is in part mediated by ATP-binding cassette (ABC) transporters. In order to assess the contribution of individual ABC transporters to root exudation, we performed an LC-MS based non-targeted metabolite profiling of semi-polar metabolites accumulating in root exudates of Arabidopsis thaliana plants and mutants deficient in the expression of ABCG36 (PDR8/PEN3), ABCG37 (PDR9) or both transporters. Comparison of the metabolite profiles indicated distinct roles for each ABC transporter in root exudation. Thymidine exudation could be attributed to ABCG36 function, whereas coumarin exudation was strongly reduced only in ABCG37 deficient plants. However, coumarin exudation was compromised in abcg37 mutants only with respect to certain metabolites of this substance class. The specificity of ABCG37 for individual coumarins was further verified by a targeted LC-MS based coumarin profiling method. The response to iron deficiency, which is known to strongly induce coumarin exudation, was also investigated. In either treatment, the distribution of individual coumarins between roots and exudates in the investigated genotypes suggested the involvement of ABCG37 in the exudation specifically of highly oxygenated rather than monohydroxylated coumarins.
Collapse
Affiliation(s)
- Jörg Ziegler
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.
| | - Stephan Schmidt
- Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Nadine Strehmel
- Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Dierk Scheel
- Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Steffen Abel
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.,Institute of Biochemistry and Biotechnology, Martin Luther University Halle Wittenberg, D-06120, Halle (Saale), Germany.,Department of Plant Sciences, University of California-Davis, Davis, CA, 95616, USA
| |
Collapse
|
34
|
Tzafestas K, Razalan MM, Gyulev I, Mazari AMA, Mannervik B, Rylott EL, Bruce NC. Expression of a Drosophila glutathione transferase in Arabidopsis confers the ability to detoxify the environmental pollutant, and explosive, 2,4,6-trinitrotoluene. New Phytol 2017; 214:294-303. [PMID: 27924627 DOI: 10.1111/nph.14326] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Accepted: 10/09/2016] [Indexed: 06/06/2023]
Abstract
The explosive 2,4,6-trinitrotoluene (TNT) is a significant, global environmental pollutant that is both toxic and recalcitrant to degradation. Given the sheer scale and inaccessible nature of contaminated areas, phytoremediation may be a viable clean-up approach. Here, we have characterized a Drosophila melanogaster glutathione transferase (DmGSTE6) which has activity towards TNT. Recombinantly expressed, purified DmGSTE6 produces predominantly 2-glutathionyl-4,6-dinitrotoluene, and has a 2.5-fold higher Maximal Velocity (Vmax ), and five-fold lower Michaelis Constant (Km ) than previously characterized TNT-active Arabidopsis thaliana (Arabidopsis) GSTs. Expression of DmGSTE6 in Arabidopsis conferred enhanced resistance to TNT, and increased the ability to remove TNT from contaminated soil relative to wild-type plants. Arabidopsis lines overexpressing TNT-active GSTs AtGST-U24 and AtGST-U25 were compromised in biomass production when grown in the absence of TNT. This yield drag was not observed in the DmGSTE6-expressing Arabidopsis lines. We hypothesize that increased levels of endogenous TNT-active GSTs catalyse excessive glutathionylation of endogenous substrates, depleting glutathione pools, an activity that DmGST may lack. In conclusion, DmGSTE6 has activity towards TNT, producing a compound with potential for further biodegradation. Selecting or manipulating plants to confer DmGSTE6-like activity could contribute towards development of phytoremediation strategies to clean up TNT from polluted military sites.
Collapse
Affiliation(s)
- Kyriakos Tzafestas
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK
| | - Maria M Razalan
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK
| | - Ivan Gyulev
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK
| | - Aslam M A Mazari
- Department of Neurochemistry, Stockholm University, S-106 91, Stockholm, Sweden
| | - Bengt Mannervik
- Department of Neurochemistry, Stockholm University, S-106 91, Stockholm, Sweden
| | - Elizabeth L Rylott
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK
| | - Neil C Bruce
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK
| |
Collapse
|
35
|
|
36
|
Helwi P, Guillaumie S, Thibon C, Keime C, Habran A, Hilbert G, Gomes E, Darriet P, Delrot S, van Leeuwen C. Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level. BMC Plant Biol 2016; 16:173. [PMID: 27498539 PMCID: PMC4976470 DOI: 10.1186/s12870-016-0836-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 06/20/2016] [Indexed: 05/29/2023]
Abstract
BACKGROUND Volatile thiols largely contribute to the organoleptic characteristics and typicity of Sauvignon blanc wines. Among this family of odorous compounds, 3-sulfanylhexan-1-ol (3SH) and 4-methyl-4-sulfanylpentan-2-one (4MSP) have a major impact on wine flavor. These thiols are formed during alcoholic fermentation by the yeast from odorless, non-volatile precursors found in the berries and the must. The present study investigates the effects of vine nitrogen (N) status on 3SH and 4MSP content in Sauvignon blanc wine and on the glutathionylated and cysteinylated precursors of 3SH (Glut-3SH and Cys-3SH) in the berries and the must. This is paralleled by a RNA-seq analysis of gene expression in the berries. The impact of N supply on the expression of the glutathione-S-transferase 3 and 4 (VviGST3 and VviGST4) and the γ-glutamyltranspeptidase (VviGGT), considered as key genes in their biosynthesis, was also evaluated. RESULTS N supply (N100 treatment) increased the 3SH content in wine while no effect was noticed on 4MSP level. Furthermore, N supply increased Glut-3SH levels in grape berries at late berry ripening stages, and this effect was highly significant in must at harvest. No significant effect of N addition was noticed on Cys-3SH concentration. The transcript abundance of the glutathione-S-transferases VviGST3 and VviGST4 and the γ-glutamyltranspeptidase (VviGGT), were similar between the control and the N100 treatment. New candidate genes which might be implicated in the biosynthetic pathway of 3SH precursors were identified by whole transcriptome shotgun sequencing (RNA-seq). CONCLUSIONS High vine N status has a positive effect on 3SH content in wine through an increase of Glut-3SH levels in grape berries and must. Candidate GSTs and glutathione-S-conjugates type transporters involved in this stimulation were identified by RNA-seq analysis.
Collapse
Affiliation(s)
- Pierre Helwi
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- Bordeaux Sciences Agro, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| | - Sabine Guillaumie
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| | - Cécile Thibon
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Unité de recherche Œnologie, EA 4577, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), USC 1366 Œnologie, 33140 Villenave d’Ornon, France
| | - Céline Keime
- Univ. de Strasbourg, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IBGMC), Institut National de la Santé et de la Recherche Médicale U 964, Centre National de Recherche Scientifique UMR 7104, 67404 Illkirch, France
| | - Aude Habran
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| | - Ghislaine Hilbert
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| | - Eric Gomes
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| | - Philippe Darriet
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Unité de recherche Œnologie, EA 4577, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), USC 1366 Œnologie, 33140 Villenave d’Ornon, France
| | - Serge Delrot
- Univ. de Bordeaux, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
- INRA, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| | - Cornelis van Leeuwen
- Bordeaux Sciences Agro, Institut des Sciences de la Vigne et du Vin (ISVV), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), UMR 1287, 33140 Villenave d’Ornon, France
| |
Collapse
|
37
|
Bhati KK, Alok A, Kumar A, Kaur J, Tiwari S, Pandey AK. Silencing of ABCC13 transporter in wheat reveals its involvement in grain development, phytic acid accumulation and lateral root formation. J Exp Bot 2016; 67:4379-89. [PMID: 27342224 PMCID: PMC5301939 DOI: 10.1093/jxb/erw224] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Low phytic acid is a trait desired in cereal crops and can be achieved by manipulating the genes involved either in its biosynthesis or its transport in the vacuoles. Previously, we have demonstrated that the wheat TaABCC13 protein is a functional transporter, primarily involved in heavy metal tolerance, and a probable candidate gene to achieve low phytate wheat. In the current study, RNA silencing was used to knockdown the expression of TaABCC13 in order to evaluate its functional importance in wheat. Transgenic plants with significantly reduced TaABCC13 transcripts in either seeds or roots were selected for further studies. Homozygous RNAi lines K1B4 and K4G7 exhibited 34-22% reduction of the phytic acid content in the mature grains (T4 seeds). These transgenic lines were defective for spike development, as characterized by reduced grain filling and numbers of spikelets. The seeds of transgenic wheat had delayed germination, but the viability of the seedlings was unaffected. Interestingly, early emergence of lateral roots was observed in TaABCC13-silenced lines as compared to non-transgenic lines. In addition, these lines also had defects in metal uptake and development of lateral roots in the presence of cadmium stress. Our results suggest roles of TaABCC13 in lateral root initiation and enhanced sensitivity towards heavy metals. Taken together, these data demonstrate that wheat ABCC13 is functionally important for grain development and plays an important role during detoxification of heavy metals.
Collapse
Affiliation(s)
- Kaushal Kumar Bhati
- National Agri-Food Biotechnology Institute (Department of Biotechnology), C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160071, Punjab, India
| | - Anshu Alok
- National Agri-Food Biotechnology Institute (Department of Biotechnology), C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160071, Punjab, India
| | - Anil Kumar
- National Agri-Food Biotechnology Institute (Department of Biotechnology), C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160071, Punjab, India
| | - Jagdeep Kaur
- Department of Biotechnology, Panjab University, Chandigarh, Punjab, India
| | - Siddharth Tiwari
- National Agri-Food Biotechnology Institute (Department of Biotechnology), C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160071, Punjab, India
| | - Ajay Kumar Pandey
- National Agri-Food Biotechnology Institute (Department of Biotechnology), C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160071, Punjab, India
| |
Collapse
|
38
|
Huang YY, Shen C, Chen JX, He CT, Zhou Q, Tan X, Yuan JG, Yang ZY. Comparative Transcriptome Analysis of Two Ipomoea aquatica Forsk. Cultivars Targeted To Explore Possible Mechanism of Genotype-Dependent Accumulation of Cadmium. J Agric Food Chem 2016; 64:5241-50. [PMID: 27267580 DOI: 10.1021/acs.jafc.6b01267] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
A low-shoot-Cd (QLQ) and a high-shoot-Cd cultivar (T308) of water spinach (Ipomoea aquatica Forsk.) were used to investigate molecular mechanism of the genotype difference in cadmium (Cd) accumulation. RNA-Seq under 9 and 72 h cadmium exposures (5 mg L(-1)) were undertaken to explore Cd induced genotype differences in molecular processes. In total, 253 747 540 clean reads were assembled into 57 524 unigenes. Among them, 6136 and 10 064 unigenes were differentially expressed in QLQ and T308, respectively. Cell wall biosynthesis genes, such as GAUT and laccase, and three Cd efflux genes (Nramp5, MATE9, and YSL7) had higher expression levels in QLQ, while the genes in sulfur and glutathione metabolism pathway, e.g., sulfate transporter and cysteine synthase, showed higher expression levels in T308. These findings would be useful for further understanding of the mechanisms related to genotype-dependent Cd accumulation and developing the molecular assisted screening and breeding of low-shoot-Cd cultivars for water spinach.
Collapse
Affiliation(s)
- Ying-Ying Huang
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Chuang Shen
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Jing-Xin Chen
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Chun-Tao He
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Qian Zhou
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Xiao Tan
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Jian-Gang Yuan
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| | - Zhong-Yi Yang
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University , Xingang Xi Road 135, Guangzhou 510275, China
| |
Collapse
|
39
|
Xu D, Veres D, Belew Z, Olsen C, Nour-Eldin H, Halkier B. Functional Expression and Characterization of Plant ABC Transporters in Xenopus laevis Oocytes for Transport Engineering Purposes. Methods Enzymol 2016; 576:207-24. [DOI: 10.1016/bs.mie.2016.04.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
40
|
Brunetti P, Zanella L, De Paolis A, Di Litta D, Cecchetti V, Falasca G, Barbieri M, Altamura MM, Costantino P, Cardarelli M. Cadmium-inducible expression of the ABC-type transporter AtABCC3 increases phytochelatin-mediated cadmium tolerance in Arabidopsis. J Exp Bot 2015; 66:3815-29. [PMID: 25900618 PMCID: PMC4473984 DOI: 10.1093/jxb/erv185] [Citation(s) in RCA: 178] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The heavy metal cadmium (Cd) is a widespread environmental contaminant with harmful effects on living cells. In plants, phytochelatin (PC)-dependent Cd detoxification requires that PC-Cd complexes are transported into vacuoles. Here, it is shown that Arabidopsis thaliana seedlings defective in the ABCC transporter AtABCC3 (abcc3) have an increased sensitivity to different Cd concentrations, and that seedlings overexpressing AtABCC3 (AtABCC3ox) have an increased Cd tolerance. The cellular distribution of Cd was analysed in protoplasts from abcc3 mutants and AtABCC3 overexpressors grown in the presence of Cd, by means of the Cd-specific fluorochromes 5-nitrobenzothiazole coumarin (BTC-5N) and Leadmium™ Green AM dye. This analysis revealed that Cd is mostly localized in the cytosol of abcc3 mutant protoplasts whereas there is an increase in vacuolar Cd in protoplasts from AtABCC3ox plants. Overexpression of AtABCC3 in cad1-3 mutant seedlings defective in PC production and in plants treated with l-buthionine sulphoximine (BSO), an inhibitor of PC biosynthesis, had no effect on Cd tolerance, suggesting that AtABCC3 acts via PCs. In addition, overexpression of AtABCC3 in atabcc1 atabcc2 mutant seedlings defective in the Cd transporters AtABCC1 and AtABCC2 complements the Cd sensitivity of double mutants, but not in the presence of BSO. Accordingly, the level of AtABCC3 transcript in wild type seedlings was lower than that of AtABCC1 and AtABCC2 in the absence of Cd but higher after Cd exposure, and even higher in atabcc1 atabcc2 mutants. The results point to AtABCC3 as a transporter of PC-Cd complexes, and suggest that its activity is regulated by Cd and is co-ordinated with the activity of AtABCC1/AtABCC2.
Collapse
Affiliation(s)
- Patrizia Brunetti
- Istituto di Biologia e Patologia Molecolari, CNR, Sapienza Università di Roma, Rome, Italy Dipartimento di Biologia e Biotecnologie, Sapienza Università di Roma, Rome, Italy
| | - Letizia Zanella
- Dipartimento di Biologia Ambientale, Sapienza Università di Roma, Rome, Italy
| | - Angelo De Paolis
- Istituto di Scienze delle Produzioni Alimentari, CNR, Lecce, Italy
| | - Davide Di Litta
- Istituto di Biologia e Patologia Molecolari, CNR, Sapienza Università di Roma, Rome, Italy
| | - Valentina Cecchetti
- Istituto di Biologia e Patologia Molecolari, CNR, Sapienza Università di Roma, Rome, Italy Dipartimento di Biologia e Biotecnologie, Sapienza Università di Roma, Rome, Italy
| | - Giuseppina Falasca
- Dipartimento di Biologia Ambientale, Sapienza Università di Roma, Rome, Italy
| | - Maurizio Barbieri
- Dipartimento di Scienze della Terra, Sapienza Università di Roma, Rome, Italy
| | | | - Paolo Costantino
- Istituto di Biologia e Patologia Molecolari, CNR, Sapienza Università di Roma, Rome, Italy Dipartimento di Biologia e Biotecnologie, Sapienza Università di Roma, Rome, Italy
| | - Maura Cardarelli
- Istituto di Biologia e Patologia Molecolari, CNR, Sapienza Università di Roma, Rome, Italy
| |
Collapse
|
41
|
Walter S, Kahla A, Arunachalam C, Perochon A, Khan MR, Scofield SR, Doohan FM. A wheat ABC transporter contributes to both grain formation and mycotoxin tolerance. J Exp Bot 2015; 66:2583-93. [PMID: 25732534 PMCID: PMC4986867 DOI: 10.1093/jxb/erv048] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The mycotoxin deoxynivalenol (DON) acts as a disease virulence factor for Fusarium fungi, and tolerance of DON enhances wheat resistance to Fusarium head blight (FHB) disease. Two variants of an ATP-binding cassette (ABC) family C transporter gene were cloned from DON-treated wheat mRNA, namely TaABCC3.1 and TaABCC3.2. These represent two of three putative genes identified on chromosomes 3A, 3B, and 3D of the wheat genome sequence. Variant TaABCC3.1 represents the DON-responsive transcript previously associated with DON resistance in wheat. PCR-based mapping and in silico sequence analyses located TaABCC3.1 to the short arm of wheat chromosome 3B (not within the FHB resistance quantitative trait locus Fhb1). In silico analyses of microarray data indicated that TaABCC3 genes are expressed in reproductive tissue and roots, and in response to the DON producer Fusarium graminearum. Gene expression studies showed that TaABCC3.1 is activated as part of the early host response to DON and in response to the FHB defence hormone jasmonic acid. Virus-induced gene silencing (VIGS) confirmed that TaABCC3 genes contributed to DON tolerance. VIGS was performed using two independent viral construct applications: one specifically targeted TaABCC3.1 for silencing, while the other targeted this gene and the chromosome 3A homeologue. In both instances, VIGS resulted in more toxin-induced discoloration of spikelets, compared with the DON effects in non-silenced spikelets at 14 d after toxin treatment (≥2.2-fold increase, P<0.05). Silencing by both VIGS constructs enhanced head ripening, and especially so in DON-treated heads. VIGS of TaABCC3 genes also reduced the grain number by more than 28% (P<0.05), both with and without DON treatment, and the effects were greater for the construct that targeted the two homeologues. Hence, DON-responsive TaABCC3 genes warrant further study to determine their potential as disease resistance breeding targets and their function in grain formation and ripening.
Collapse
Affiliation(s)
- Stephanie Walter
- UCD Earth Institute and School of Biology & Environment Science, University College Dublin, Science Centre West, Belfield, Dublin 4, Ireland
| | - Amal Kahla
- UCD Earth Institute and School of Biology & Environment Science, University College Dublin, Science Centre West, Belfield, Dublin 4, Ireland
| | - Chanemoughasoundharam Arunachalam
- UCD Earth Institute and School of Biology & Environment Science, University College Dublin, Science Centre West, Belfield, Dublin 4, Ireland
| | - Alexandre Perochon
- UCD Earth Institute and School of Biology & Environment Science, University College Dublin, Science Centre West, Belfield, Dublin 4, Ireland
| | - Mojibur R Khan
- UCD Earth Institute and School of Biology & Environment Science, University College Dublin, Science Centre West, Belfield, Dublin 4, Ireland
| | - Steven R Scofield
- USDA-ARS, Crop Production and Pest Control Research Unit and Purdue University, Department of Agronomy, 915 West Street, West Lafayette, IN 47907-2054, USA
| | - Fiona M Doohan
- UCD Earth Institute and School of Biology & Environment Science, University College Dublin, Science Centre West, Belfield, Dublin 4, Ireland
| |
Collapse
|
42
|
Bhati KK, Sharma S, Aggarwal S, Kaur M, Shukla V, Kaur J, Mantri S, Pandey AK. Genome-wide identification and expression characterization of ABCC-MRP transporters in hexaploid wheat. Front Plant Sci 2015; 6:488. [PMID: 26191068 PMCID: PMC4486771 DOI: 10.3389/fpls.2015.00488] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Accepted: 06/19/2015] [Indexed: 05/18/2023]
Abstract
The ABCC multidrug resistance associated proteins (ABCC-MRP), a subclass of ABC transporters are involved in multiple physiological processes that include cellular homeostasis, metal detoxification, and transport of glutathione-conjugates. Although they are well-studied in humans, yeast, and Arabidopsis, limited efforts have been made to address their possible role in crop like wheat. In the present work, 18 wheat ABCC-MRP proteins were identified that showed the uniform distribution with sub-families from rice and Arabidopsis. Organ-specific quantitative expression analysis of wheat ABCC genes indicated significantly higher accumulation in roots (TaABCC2, TaABCC3, and TaABCC11 and TaABCC12), stem (TaABCC1), leaves (TaABCC16 and TaABCC17), flag leaf (TaABCC14 and TaABCC15), and seeds (TaABCC6, TaABCC8, TaABCC12, TaABCC13, and TaABCC17) implicating their role in the respective tissues. Differential transcript expression patterns were observed for TaABCC genes during grain maturation speculating their role during seed development. Hormone treatment experiments indicated that some of the ABCC genes could be transcriptionally regulated during seed development. In the presence of Cd or hydrogen peroxide, distinct molecular expression of wheat ABCC genes was observed in the wheat seedlings, suggesting their possible role during heavy metal generated oxidative stress. Functional characterization of the wheat transporter, TaABCC13 a homolog of maize LPA1 confirms its role in glutathione-mediated detoxification pathway and is able to utilize adenine biosynthetic intermediates as a substrate. This is the first comprehensive inventory of wheat ABCC-MRP gene subfamily.
Collapse
Affiliation(s)
- Kaushal K. Bhati
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
| | - Shivani Sharma
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
| | - Sipla Aggarwal
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
| | - Mandeep Kaur
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
| | - Vishnu Shukla
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
| | - Jagdeep Kaur
- Department of Biotechnology, Panjab UniversityPunjab, India
| | - Shrikant Mantri
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
| | - Ajay K. Pandey
- Department of Biotechnology, National Agri-Food Biotechnology InstitutePunjab, India
- *Correspondence: Ajay K. Pandey, Department of Biotechnology, National Agri-Food Biotechnology Institute, C-127, Industrial Area, S.A.S. Nagar, Phase 8, Mohali-160071, Punjab, India
| |
Collapse
|
43
|
Fukudome A, Aksoy E, Wu X, Kumar K, Jeong IS, May K, Russell WK, Koiwa H. Arabidopsis CPL4 is an essential C-terminal domain phosphatase that suppresses xenobiotic stress responses. Plant J 2014; 80:27-39. [PMID: 25041272 DOI: 10.1111/tpj.12612] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 06/27/2014] [Accepted: 07/02/2014] [Indexed: 05/20/2023]
Abstract
Eukaryotic gene expression is both promoted and inhibited by the reversible phosphorylation of the C-terminal domain of RNA polymerase II (pol II CTD). More than 20 Arabidopsis genes encode CTD phosphatase homologs, including four CTD phosphatase-like (CPL) family members. Although in vitro CTD phosphatase activity has been established for some CPLs, none have been shown to be involved in the phosphoregulation of pol II in vivo. Here we report that CPL4 is a CTD phosphatase essential for the viability of Arabidopsis thaliana. Mass spectrometry analysis identified the pol II subunits RPB1, RPB2 and RPB3 in the affinity-purified CPL4 complex. CPL4 dephosphorylates both Ser2- and Ser5-PO(4) of the CTD in vitro, with a preference for Ser2-PO(4). Arabidopsis plants overexpressing CPL4 accumulated hypophosphorylated pol II, whereas RNA interference-mediated silencing of CPL4 promoted hyperphosphorylation of pol II. A D128A mutation in the conserved DXDXT motif of the CPL4 catalytic domain resulted in a dominant negative form of CPL4, the overexpression of which inhibited transgene expression in transient assays. Inhibition was abolished by truncation of the phosphoprotein-binding Breast Cancer 1 C-terminal domain of CPL4, suggesting that both catalytic function and protein-protein interaction are essential for CPL4-mediated regulation of gene expression. We were unable to recover a homozygous cpl4 mutant, probably due to the zygotic lethality of this mutation. The reduction in CPL4 levels in CPL4(RNAi) plants increased transcript levels of a suite of herbicide/xenobiotic-responsive genes and improved herbicide tolerance, thus suggesting an additional role for CPL4 as a negative regulator of the xenobiotic detoxification pathway.
Collapse
Affiliation(s)
- Akihito Fukudome
- Molecular and Environmental Plant Sciences, Department of Horticultural Sciences, Vegetable and Fruit Development Center, Texas A&M University, College Station, TX, 77843, USA
| | | | | | | | | | | | | | | |
Collapse
|
44
|
Tully JP, Hill AE, Ahmed HMR, Whitley R, Skjellum A, Mukhtar MS. Expression-based network biology identifies immune-related functional modules involved in plant defense. BMC Genomics 2014; 15:421. [PMID: 24888606 PMCID: PMC4070563 DOI: 10.1186/1471-2164-15-421] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Accepted: 05/27/2014] [Indexed: 01/12/2023] Open
Abstract
Background Plants respond to diverse environmental cues including microbial perturbations by coordinated regulation of thousands of genes. These intricate transcriptional regulatory interactions depend on the recognition of specific promoter sequences by regulatory transcription factors. The combinatorial and cooperative action of multiple transcription factors defines a regulatory network that enables plant cells to respond to distinct biological signals. The identification of immune-related modules in large-scale transcriptional regulatory networks can reveal the mechanisms by which exposure to a pathogen elicits a precise phenotypic immune response. Results We have generated a large-scale immune co-expression network using a comprehensive set of Arabidopsis thaliana (hereafter Arabidopsis) transcriptomic data, which consists of a wide spectrum of immune responses to pathogens or pathogen-mimicking stimuli treatments. We employed both linear and non-linear models to generate Arabidopsis immune co-expression regulatory (AICR) network. We computed network topological properties and ascertained that this newly constructed immune network is densely connected, possesses hubs, exhibits high modularity, and displays hallmarks of a “real” biological network. We partitioned the network and identified 156 novel modules related to immune functions. Gene Ontology (GO) enrichment analyses provided insight into the key biological processes involved in determining finely tuned immune responses. We also developed novel software called OCCEAN (One Click Cis-regulatory Elements ANalysis) to discover statistically enriched promoter elements in the upstream regulatory regions of Arabidopsis at a whole genome level. We demonstrated that OCCEAN exhibits higher precision than the existing promoter element discovery tools. In light of known and newly discovered cis-regulatory elements, we evaluated biological significance of two key immune-related functional modules and proposed mechanism(s) to explain how large sets of diverse GO genes coherently function to mount effective immune responses. Conclusions We used a network-based, top-down approach to discover immune-related modules from transcriptomic data in Arabidopsis. Detailed analyses of these functional modules reveal new insight into the topological properties of immune co-expression networks and a comprehensive understanding of multifaceted plant defense responses. We present evidence that our newly developed software, OCCEAN, could become a popular tool for the Arabidopsis research community as well as potentially expand to analyze other eukaryotic genomes. Electronic supplementary material The online version of this article (doi:10.1186/1471-2164-15-421) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
| | | | | | | | | | - M Shahid Mukhtar
- Department of Biology, University of Alabama at Birmingham, Birmingham, AL, 35294-1170, USA.
| |
Collapse
|
45
|
Remy E, Duque P. Beyond cellular detoxification: a plethora of physiological roles for MDR transporter homologs in plants. Front Physiol 2014; 5:201. [PMID: 24910617 PMCID: PMC4038776 DOI: 10.3389/fphys.2014.00201] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Accepted: 05/09/2014] [Indexed: 12/31/2022] Open
Abstract
Higher plants possess a multitude of Multiple Drug Resistance (MDR) transporter homologs that group into three distinct and ubiquitous families—the ATP-Binding Cassette (ABC) superfamily, the Major Facilitator Superfamily (MFS), and the Multidrug And Toxic compound Extrusion (MATE) family. As in other organisms, such as fungi, mammals, and bacteria, MDR transporters make a primary contribution to cellular detoxification processes in plants, mainly through the extrusion of toxic compounds from the cell or their sequestration in the central vacuole. This review aims at summarizing the currently available information on the in vivo roles of MDR transporters in plant systems. Taken together, these data clearly indicate that the biological functions of ABC, MFS, and MATE carriers are not restricted to xenobiotic and metal detoxification. Importantly, the activity of plant MDR transporters also mediates biotic stress resistance and is instrumental in numerous physiological processes essential for optimal plant growth and development, including the regulation of ion homeostasis and polar transport of the phytohormone auxin.
Collapse
Affiliation(s)
- Estelle Remy
- Instituto Gulbenkian de Ciência Oeiras, Portugal
| | - Paula Duque
- Instituto Gulbenkian de Ciência Oeiras, Portugal
| |
Collapse
|
46
|
Peresson C, Petrussa E, Filippi A, Tramer F, Passamonti S, Rajcevic U, Montanič S, Terdoslavich M, Čurin Šerbec V, Vianello A, Braidot E. Involvement of mammalian bilitranslocase-like protein(s) in chlorophyll catabolism of Pisum sativum L. tissues. J Bioenerg Biomembr 2014; 46:109-17. [PMID: 24510308 DOI: 10.1007/s10863-014-9539-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2013] [Accepted: 01/16/2014] [Indexed: 10/25/2022]
Abstract
Putative pea bilin and cyclic tetrapyrrole transporter proteins were identified by means of an antibody raised against a bilirubin-interacting aminoacidic sequence of mammalian bilitranslocase (TC No. 2.A.65.1.1). The immunochemical approach showed the presence of several proteins mostly in leaf microsomal, chloroplast and tonoplast vesicles. In these membrane fractions, electrogenic bromosulfalein transport activity was also monitored, being specifically inhibited by anti-bilitranslocase sequence antibody. Moreover, the inhibition of transport activity in pea leaf chloroplast vesicles, by both the synthetic cyclic tetrapyrrole chlorophyllin and the heme catabolite biliverdin, supports the involvement of some of these proteins in the transport of linear/cyclic tetrapyrroles during chlorophyll metabolism. Immunochemical localization in chloroplast sub-compartments revealed that these putative bilitranslocase-like transporters are restricted to the thylakoids only, suggesting their preferential implication in the uptake of cyclic tetrapyrrolic intermediates from the stroma during chlorophyll biosynthesis. Finally, the presence of a conserved bilin-binding sequence in different proteins (enzymes and transporters) from divergent species is discussed in an evolutionary context.
Collapse
Affiliation(s)
- Carlo Peresson
- Department of Agricultural and Environmental Sciences, Section of Plant Biology, University of Udine, Via delle Scienze 91, 33100, Udine, Italy
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
47
|
Affiliation(s)
- Yuichiro Kashiyama
- Graduate School of Life Sciences, Ritsumeikan University
- Department of Environmental and Biological Chemistry, Fukui University of Technology
- Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST)
| | | |
Collapse
|
48
|
Mirza N, Mahmood Q, Maroof Shah M, Pervez A, Sultan S. Plants as useful vectors to reduce environmental toxic arsenic content. ScientificWorldJournal 2014; 2014:921581. [PMID: 24526924 PMCID: PMC3913097 DOI: 10.1155/2014/921581] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2013] [Accepted: 10/23/2013] [Indexed: 11/17/2022] Open
Abstract
Arsenic (As) toxicity in soil and water is an increasing menace around the globe. Its concentration both in soil and environment is due to natural and anthropogenic activities. Rising arsenic concentrations in groundwater is alarming due to the health risks to plants, animals, and human beings. Anthropogenic As contamination of soil may result from mining, milling, and smelting of copper, lead, zinc sulfide ores, hide tanning waste, dyes, chemical weapons, electroplating, gas exhaust, application of municipal sludge on land, combustion of fossil fuels, As additives to livestock feed, coal fly ash, and use of arsenical pesticides in agricultural sector. Phytoremediation can be viewed as biological, solar-driven, pump-and-treat system with an extensive, self-extending uptake network (the root system) that enhances the natural ecosystems for subsequent productive use. The present review presents recent scientific developments regarding phytoremediation of arsenic contaminated environments and its possible detoxification mechanisms in plants.
Collapse
Affiliation(s)
- Nosheen Mirza
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad 22060, Pakistan
| | - Qaisar Mahmood
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad 22060, Pakistan
| | - Mohammad Maroof Shah
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad 22060, Pakistan
| | - Arshid Pervez
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad 22060, Pakistan
| | - Sikander Sultan
- Department of Microbiology and Molecular Genetics, University of the Punjab, Quaid-i-Azam Campus, Lahore 54590, Pakistan
| |
Collapse
|
49
|
Shoji T. ATP-Binding Cassette and Multidrug and Toxic Compound Extrusion Transporters in Plants. International Review of Cell and Molecular Biology 2014. [DOI: 10.1016/b978-0-12-800255-1.00006-5] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
50
|
Zargar SM, Kurata R, Inaba S, Fukao Y. Unraveling the iron deficiency responsive proteome in Arabidopsis shoot by iTRAQ-OFFGEL approach. Plant Signal Behav 2013; 8:doi: 10.4161/psb.26892. [PMID: 24494240 PMCID: PMC4091060 DOI: 10.4161/psb.26892] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Iron (Fe) is required by plants for basic redox reactions in photosynthesis and respiration, and for many other key enzymatic reactions in biological processes. Fe homeostatic mechanisms have evolved in plants to enable the uptake and sequestration of Fe in cells. To elucidate the network of proteins that regulate Fe homeostasis and transport, we optimized the iTRAQ-OFFGEL method to identify and quantify the number of proteins that respond to Fe deficiency in the model plant Arabidopsis. In this study, Fe deficiency was created using Fe-deficient growth conditions, excess zinc (Zn), and use of the irt1-1 mutant in which the IRT1 Fe transporter is disrupted. Using the iTRAQ-OFFGEL approach, we identified 1139 proteins, including novel Fe deficiency-responsive proteins, in microsomal fractions isolated from 3 different types of Fe-deficient shoots compared with just 233 proteins identified using conventional iTRAQ-CEX. Further analysis showed that greater numbers of low-abundance proteins could be identified using the iTRAQ-OFFGEL method and that proteins could be identified from numerous cellular compartments. The improved iTRAQ-OFFGEL method used in this study provided an efficient means for identifying greater numbers of proteins from microsomal fractions of Arabidopsis shoots. The proteome identified in this study provides new insight into the regulatory cross talk between Fe-deficient and excess Zn conditions.
Collapse
Affiliation(s)
- Sajad Majeed Zargar
- Plant Global Educational Project; Nara Institute of Science and Technology; Ikoma, Japan
- School of Biotechnology; S K University of Agricultural Sciences and Technology; Chatha, Jammu, Jammu and Kashmir, India
| | - Rie Kurata
- Graduate School of Biological Sciences; Nara Institute of Science and Technology; Ikoma, Japan
| | - Shoko Inaba
- Plant Global Educational Project; Nara Institute of Science and Technology; Ikoma, Japan
| | - Yoichiro Fukao
- Plant Global Educational Project; Nara Institute of Science and Technology; Ikoma, Japan
- Graduate School of Biological Sciences; Nara Institute of Science and Technology; Ikoma, Japan
- Correspondence to: Yoichiro Fukao,
| |
Collapse
|