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Andrianaivoarimanana V, Savin C, Birdsell DN, Vogler AJ, Le Guern AS, Rahajandraibe S, Brémont S, Rahelinirina S, Sahl JW, Ramasindrazana B, Rakotonanahary RJL, Rakotomanana F, Randremanana R, Maheriniaina V, Razafimbia V, Kwasiborski A, Balière C, Ratsitorahina M, Baril L, Keim P, Caro V, Rasolofo V, Spiegel A, Pizarro-Cerda J, Wagner DM, Rajerison M. Multiple Introductions of Yersinia pestis during Urban Pneumonic Plague Epidemic, Madagascar, 2017. Emerg Infect Dis 2024; 30:289-298. [PMID: 38270131 PMCID: PMC10826772 DOI: 10.3201/eid3002.230759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024] Open
Abstract
Pneumonic plague (PP) is characterized by high infection rate, person-to-person transmission, and rapid progression to severe disease. In 2017, a PP epidemic occurred in 2 Madagascar urban areas, Antananarivo and Toamasina. We used epidemiologic data and Yersinia pestis genomic characterization to determine the sources of this epidemic. Human plague emerged independently from environmental reservoirs in rural endemic foci >20 times during August-November 2017. Confirmed cases from 5 emergences, including 4 PP cases, were documented in urban areas. Epidemiologic and genetic analyses of cases associated with the first emergence event to reach urban areas confirmed that transmission started in August; spread to Antananarivo, Toamasina, and other locations; and persisted in Antananarivo until at least mid-November. Two other Y. pestis lineages may have caused persistent PP transmission chains in Antananarivo. Multiple Y. pestis lineages were independently introduced to urban areas from several rural foci via travel of infected persons during the epidemic.
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Affiliation(s)
| | | | | | - Amy J. Vogler
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Anne-Sophie Le Guern
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Soloandry Rahajandraibe
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Sylvie Brémont
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Soanandrasana Rahelinirina
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Jason W. Sahl
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Beza Ramasindrazana
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Rado Jean Luc Rakotonanahary
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Fanjasoa Rakotomanana
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Rindra Randremanana
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Viviane Maheriniaina
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Vaoary Razafimbia
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Aurelia Kwasiborski
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Charlotte Balière
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Maherisoa Ratsitorahina
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Laurence Baril
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Paul Keim
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Valérie Caro
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - Voahangy Rasolofo
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
| | - André Spiegel
- Institut Pasteur de Madagascar, Antananarivo, Madagascar (V. Andrianaivoarimanana, S. Rahelinirina, B. Ramasindrazana, R.J.L. Rakotonanahary, F. Rakotomanana, R. Randremanana, M. Ratsitorahina, L. Baril, V. Rasolofo, A. Spiegel, M. Rajerison)
- Institut Pasteur, Paris, France (C. Savin, A.-S. Le Guern, S. Brémont, A. Kwasiborski, C. Balière, V. Caro, J. Pizarro-Cerda)
- Northern Arizona University, Flagstaff, Arizona, USA (D.N. Birdsell, A.J. Vogler, J.W. Sahl, P. Keim, D.M. Wagner)
- Madagascar Ministry of Public Health, Antananarivo (S. Rahajandraibe, V. Maheriniaina, V. Razafimbia)
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Rasoamalala F, Gostic K, Parany MJ, Rahelinirina S, Rahajandraibe S, Gorgé O, Valade E, Harimalala M, Rajerison M, Ramasindrazana B. Population dynamics of plague vector fleas in an endemic focus: implications for plague surveillance. J Med Entomol 2024; 61:201-211. [PMID: 38038662 DOI: 10.1093/jme/tjad152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 10/02/2023] [Accepted: 11/15/2023] [Indexed: 12/02/2023]
Abstract
Plague is a zoonotic vector-borne disease caused by the bacterium Yersinia pestis. In Madagascar, it persists in identified foci, where it is a threat to public health generally from September to April. A more complete understanding of how the disease persists could guide control strategies. Fleas are the main vector for transmission between small mammal hosts and humans, and fleas likely play a role in the maintenance of plague. This study characterized the dynamics of flea populations in plague foci alongside the occurrence of human cases. From 2018 to 2020, small mammals were trapped at sites in the central Highlands of Madagascar. A total of 2,762 small mammals were captured and 5,295 fleas were collected. The analysis examines 2 plague vector species in Madagascar (Synopsyllus fonquerniei and Xenopsylla cheopis). Generalized linear models were used to relate flea abundance to abiotic factors, with adjustments for trap location and flea species. We observed significant effects of abiotic factors on the abundance, intensity, and infestation rate by the outdoor-associated flea species, S. fonquerniei, but weak seasonality for the indoor-associated flea species, X. cheopis. A difference in the timing of peak abundance was observed between the 2 flea species during and outside the plague season. While the present study did not identify a clear link between flea population dynamics and plague maintenance, as only one collected X. cheopis was infected, the results presented herein can be used by local health authorities to improve monitoring and control strategies of plague vector fleas in Madagascar.
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Affiliation(s)
- Fanohinjanaharinirina Rasoamalala
- Plague Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Faculty of Sciences, University of Antananarivo, Antananarivo, Madagascar
| | - Katelyn Gostic
- Department of Ecology and Evolution, University of Chicago, Chicago,USA
| | - Mamionah J Parany
- Plague Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Faculty of Sciences, University of Antananarivo, Antananarivo, Madagascar
| | | | | | - Olivier Gorgé
- Institut de Recherche Biomédicale des Armées, Brétigny-sur-Orge, France
| | - Eric Valade
- Institut de Recherche Biomédicale des Armées, Brétigny-sur-Orge, France
- Ecole du Val-de-Grâce, Paris, France
| | - Mireille Harimalala
- Medical Entomology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | | | - Beza Ramasindrazana
- Plague Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Faculty of Sciences, University of Antananarivo, Antananarivo, Madagascar
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ten Bosch Q, Andrianaivoarimanana V, Ramasindrazana B, Mikaty G, Rakotonanahary RJL, Nikolay B, Rahajandraibe S, Feher M, Grassin Q, Paireau J, Rahelinirina S, Randremanana R, Rakotoarimanana F, Melocco M, Rasolofo V, Pizarro-Cerdá J, Le Guern AS, Bertherat E, Ratsitorahina M, Spiegel A, Baril L, Rajerison M, Cauchemez S. Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar. PLoS Biol 2022; 20:e3001736. [PMID: 35969599 PMCID: PMC9410560 DOI: 10.1371/journal.pbio.3001736] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 08/25/2022] [Accepted: 06/30/2022] [Indexed: 11/18/2022] Open
Abstract
During outbreaks, the lack of diagnostic “gold standard” can mask the true burden of infection in the population and hamper the allocation of resources required for control. Here, we present an analytical framework to evaluate and optimize the use of diagnostics when multiple yet imperfect diagnostic tests are available. We apply it to laboratory results of 2,136 samples, analyzed with 3 diagnostic tests (based on up to 7 diagnostic outcomes), collected during the 2017 pneumonic (PP) and bubonic plague (BP) outbreak in Madagascar, which was unprecedented both in the number of notified cases, clinical presentation, and spatial distribution. The extent of these outbreaks has however remained unclear due to nonoptimal assays. Using latent class methods, we estimate that 7% to 15% of notified cases were Yersinia pestis-infected. Overreporting was highest during the peak of the outbreak and lowest in the rural settings endemic to Y. pestis. Molecular biology methods offered the best compromise between sensitivity and specificity. The specificity of the rapid diagnostic test was relatively low (PP: 82%, BP: 85%), particularly for use in contexts with large quantities of misclassified cases. Comparison with data from a subsequent seasonal Y. pestis outbreak in 2018 reveal better test performance (BP: specificity 99%, sensitivity: 91%), indicating that factors related to the response to a large, explosive outbreak may well have affected test performance. We used our framework to optimize the case classification and derive consolidated epidemic trends. Our approach may help reduce uncertainties in other outbreaks where diagnostics are imperfect. The response to the 2017 plague outbreak in Madagascar was complicated by the lack of a perfect or "gold standard" diagnostic. This study shows how multiple, imperfect diagnostic tests can be used to improve the response to an outbreak.
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Affiliation(s)
- Quirine ten Bosch
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, Université Paris Cité, CNRS UMR2000, F-75015 Paris, France
- Quantitative Veterinary Epidemiology, Department of Animal Sciences, Wageningen University and Research, Wageningen, the Netherlands
- * E-mail:
| | | | | | - Guillain Mikaty
- Environment and Infectious Risks Research Unit, Laboratory for Urgent Response to Biological Threats (ERI-CIBU), Institut Pasteur, Paris, France
| | | | - Birgit Nikolay
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, Université Paris Cité, CNRS UMR2000, F-75015 Paris, France
| | | | - Maxence Feher
- Environment and Infectious Risks Research Unit, Laboratory for Urgent Response to Biological Threats (ERI-CIBU), Institut Pasteur, Paris, France
| | - Quentin Grassin
- Environment and Infectious Risks Research Unit, Laboratory for Urgent Response to Biological Threats (ERI-CIBU), Institut Pasteur, Paris, France
| | - Juliette Paireau
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, Université Paris Cité, CNRS UMR2000, F-75015 Paris, France
| | | | - Rindra Randremanana
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo Madagascar
| | - Feno Rakotoarimanana
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo Madagascar
| | - Marie Melocco
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo Madagascar
| | | | - Javier Pizarro-Cerdá
- Yersinia Research Unit, Institut Pasteur, Université Paris Cité, CNRS UMR 6047, F-75015 Paris, France
- National Reference Laboratory for Plague and other Yersiniosis, Institut Pasteur, F-75015 Paris, France
- World Health Organization Collaborating Center for Plague FRA-140, Institut Pasteur, F-75015 Paris, France
| | - Anne-Sophie Le Guern
- Yersinia Research Unit, Institut Pasteur, Université Paris Cité, CNRS UMR 6047, F-75015 Paris, France
- National Reference Laboratory for Plague and other Yersiniosis, Institut Pasteur, F-75015 Paris, France
- World Health Organization Collaborating Center for Plague FRA-140, Institut Pasteur, F-75015 Paris, France
| | - Eric Bertherat
- World Health Organization, Health Emergency Programme, Department of Infectious Hazard Management, Geneva, Switzerland
| | - Maherisoa Ratsitorahina
- Direction, Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Directorate of Health and Epidemiological Surveillance, Ministry of Public Health, Antananarivo, Madagascar
| | - André Spiegel
- Direction, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Laurence Baril
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo Madagascar
| | | | - Simon Cauchemez
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, Université Paris Cité, CNRS UMR2000, F-75015 Paris, France
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4
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Rasoamalala F, Parany MNJ, Rahajandraibe S, Rakotomanga MN, Ramihangihajason T, Soarimalala V, Boyer S, Rajerison M, Ramasindrazana B. High Rickettsial Diversity in Rodents and Their Ectoparasites From the Central Highlands of Madagascar. J Med Entomol 2022; 59:667-674. [PMID: 34958102 DOI: 10.1093/jme/tjab207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Indexed: 06/14/2023]
Abstract
Rickettsioses are among emerging infectious diseases around the world. In Madagascar, little information is available regarding Rickettsia (Rickettsiales: Rickettsiaceae) diversity and their potential impacts on public health. In fact, molecular screening of ectoparasites of mammals reported the presence of three species, Rickettsia africae, Rickettsia typhi, and Rickettsia felis. The present study aims to investigate the diversity of Rickettsia in small mammals and associated ectoparasites (fleas and ticks) using a molecular approach. In September and December 2016, fieldworks were undertaken in two districts of Madagascar to capture small mammals using standard traps (Tomahawk and Sherman traps) and collect associated ectoparasites. In total, 12 taxa of ectoparasites (5 flea and 7 tick species) were collected from 89 individuals of four species of terrestrial small mammals. Rickettsia spp. were molecularly identified in one specimen of Rattus rattus (Rodentia: Muridae), one specimen of Pulex irritans (Siphonaptera: Pulicidae) as well as four specimens of Ixodes cf. colasbelcouri (Ixodida: Ixodidae). This study showed the presence of three phylogenetically distinct taxa of Rickettsia in small mammals and their ectoparasites. The current study broadens our knowledge on the diversity of Rickettsia in the Central Highlands of Madagascar and highlights for the first time the presence of Ri. felis in R. rattus and in tick, I. cf. colasbelcouri in Madagascar. Additional studies are needed to have exhaustive information on Rickettsia in small mammals and their ectoparasites, to determine their pathogenicity as well as their potential effects on public health in order to update the national policy for the control of emerging infectious diseases in Madagascar.
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Affiliation(s)
| | - Mamionah N J Parany
- Plague Unit, Institut Pasteur de Madagascar, BP, 1274, Antananarivo, 101, Madagascar
| | | | - Malala N Rakotomanga
- Medical Entomology Unit, Institut Pasteur de Madagascar, BP, 1274, Antananarivo, 101, Madagascar
| | - Tojo Ramihangihajason
- Medical Entomology Unit, Institut Pasteur de Madagascar, BP, 1274, Antananarivo, 101, Madagascar
| | | | - Sébastien Boyer
- Medical and Veterinary Entomology Unit, Institut Pasteur de Cambogde, 5 Boulevard Monivong, Phnom Penh, Cambodia
| | - Minoarisoa Rajerison
- Plague Unit, Institut Pasteur de Madagascar, BP, 1274, Antananarivo, 101, Madagascar
| | - Beza Ramasindrazana
- Plague Unit, Institut Pasteur de Madagascar, BP, 1274, Antananarivo, 101, Madagascar
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5
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Ramasindrazana B, Parany MNJ, Rasoamalala F, Rasoanoro M, Rahajandraibe S, Vogler AJ, Sahl JW, Andrianaivoarimanana V, Rajerison M, Wagner DM. Local-scale diversity of Yersinia pestis: A case study from Ambohitromby, Ankazobe District, Madagascar. Zoonoses Public Health 2022; 69:61-70. [PMID: 34480413 DOI: 10.1111/zph.12892] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 08/12/2021] [Accepted: 08/12/2021] [Indexed: 12/30/2022]
Abstract
Plague is a re-emerging zoonotic disease and a major public health concern in several portions of the world, especially in Madagascar. We report on the presence of different subtypes of Yersinia pestis co-occurring in the same locality. After confirmation of a human plague case in Ambohitromby Commune (Ankazobe District) via isolation of Y. pestis, we undertook small mammal trapping to identify the circulation of Y. pestis amongst rodents in this locality; blood samples were collected from rodents for seroprevalence analysis. Of the 60 individuals of Rattus rattus captured, one yielded an isolate of Y. pestis, 13 others were positive for F1 antigen of Y. pestis using a rapid diagnostic test, and 4 were PCR positive targeting the caf1 and pla genes; 28/60 (46.7%) of the captured R. rattus were seropositive for Y. pestis. Whole-genome SNP analyses revealed that the two isolates obtained from the human case, and the R. rattus belonged to two different subtypes of Y. pestis (s05 and s13, respectively) that were circulating concurrently in Ambohitromby in 2016. Three Y. pestis subtypes (s03, s05 and s13) have now been isolated from Ambohitromby. Subtype s05 had been persisting there for >10 years but one or both of the other subtypes may have been introduced from the Central Highlands region as they were not observed in previous years (s13) or only observed once previously (s03). High seroprevalence against Y. pestis in R. rattus suggests that a portion of the local murine population may have acquired resistance to Y. pestis. Future research should focus on genomically characterizing Y. pestis strains circulating in Ankazobe District and other plague-endemic regions of Madagascar to better understand the overall phylogeography of Y. pestis.
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Affiliation(s)
- Beza Ramasindrazana
- Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Domaine Sciences et Technologies, Université d'Antananarivo, Antananarivo, Madagascar
| | - Mamionah N J Parany
- Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Domaine Sciences et Technologies, Université d'Antananarivo, Antananarivo, Madagascar
| | - Fanohinjanaharinirina Rasoamalala
- Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Domaine Sciences et Technologies, Université d'Antananarivo, Antananarivo, Madagascar
| | - Mercia Rasoanoro
- Institut Pasteur de Madagascar, Antananarivo, Madagascar
- Domaine Sciences et Technologies, Université d'Antananarivo, Antananarivo, Madagascar
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6
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Mahmoudi A, Kryštufek B, Sludsky A, Schmid BV, DE Almeida AMP, Lei X, Ramasindrazana B, Bertherat E, Yeszhanov A, Stenseth NC, Mostafavi E. Plague reservoir species throughout the world. Integr Zool 2021; 16:820-833. [PMID: 33264458 DOI: 10.1111/1749-4877.12511] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Plague has been known since ancient times as a re-emerging infectious disease, causing considerable socioeconomic burden in regional hotspots. To better understand the epidemiological cycle of the causative agent of the plague, its potential occurrence, and possible future dispersion, one must carefully consider the taxonomy, distribution, and ecological requirements of reservoir-species in relation either to natural or human-driven changes (e.g. climate change or urbanization). In recent years, the depth of knowledge on species taxonomy and species composition in different landscapes has undergone a dramatic expansion, driven by modern taxonomic methods such as synthetic surveys that take into consideration morphology, genetics, and the ecological setting of captured animals to establish their species identities. Here, we consider the recent taxonomic changes of the rodent species in known plague reservoirs and detail their distribution across the world, with a particular focus on those rodents considered to be keystone host species. A complete checklist of all known plague-infectable vertebrates living in plague foci is provided as a Supporting Information table.
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Affiliation(s)
- Ahmad Mahmoudi
- Department of Biology, Faculty of Science, Urmia University, Iran
- Department of Epidemiology and Biostatistics, Research Centre for Emerging and Reemerging Infectious Diseases, Pasteur Institute of Iran, Tehran, Iran
| | | | - Alexander Sludsky
- Russian Research Anti-Plague Institute «Microbe», Saratov, Russian Federation
| | - Boris V Schmid
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway
| | | | - Xu Lei
- State Key Laboratory of Integrated Management on Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | | | - Eric Bertherat
- Department of Infectious Hazard Management, Health Emergencies Programme, WHO, Geneva, Switzerland
| | - Aidyn Yeszhanov
- M.Aikimbaev's National Scientific Center for Especially Dangerous Infections, Almaty, Kazakhstan
| | - Nils Chr Stenseth
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway
| | - Ehsan Mostafavi
- Department of Epidemiology and Biostatistics, Research Centre for Emerging and Reemerging Infectious Diseases, Pasteur Institute of Iran, Tehran, Iran
- National Reference Laboratory for Plague, Tularemia and Q fever, Research Centre for Emerging and Reemerging Infectious Diseases, Pasteur Institute of Iran, Akanlu, Kabudar Ahang, Hamadan, Iran
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7
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Hoarau AOG, Goodman SM, Al Halabi D, Ramasindrazana B, Lagadec E, Le Minter G, Köster M, Dos Santos A, Schoeman MC, Gudo ES, Mavingui P, Lebarbenchon C. Investigation of astrovirus, coronavirus and paramyxovirus co-infections in bats in the western Indian Ocean. Virol J 2021; 18:205. [PMID: 34641936 PMCID: PMC8506490 DOI: 10.1186/s12985-021-01673-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 09/28/2021] [Indexed: 11/10/2022] Open
Abstract
Co-infections have a key role in virus transmission in wild reservoir hosts. We investigated the simultaneous presence of astroviruses, coronaviruses, and paramyxoviruses in bats from Madagascar, Mayotte, Mozambique, and Reunion Island. A total of 871 samples from 28 bat species representing 8 families were tested by polymerase chain reactions (PCRs) targeting the RNA-dependent RNA-polymerase genes. Overall, 2.4% of bats tested positive for the presence of at least two viruses, only on Madagascar and in Mozambique. Significant variation in the proportion of co-infections was detected among bat species, and some combinations of co-infection were more common than others. Our findings support that co-infections of the three targeted viruses occur in bats in the western Indian Ocean region, although further studies are needed to assess their epidemiological consequences.
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Affiliation(s)
- Axel O G Hoarau
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France.
| | - Steven M Goodman
- Association Vahatra, Antananarivo, Madagascar.,Field Museum of Natural History, Chicago, USA
| | - Dana Al Halabi
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Beza Ramasindrazana
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France.,Association Vahatra, Antananarivo, Madagascar.,Institut Pasteur de Madagascar, Antananarivo 101, BP 1274, Ambatofotsikely, Madagascar
| | - Erwan Lagadec
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Gildas Le Minter
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Marie Köster
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | | | - M Corrie Schoeman
- School of Life Sciences, University of Kwa-Zulu Natal, Kwa-Zulu Natal, South Africa
| | | | - Patrick Mavingui
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Camille Lebarbenchon
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
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8
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Rasoanoro M, Goodman SM, Randrianarivelojosia M, Rakotondratsimba M, Dellagi K, Tortosa P, Ramasindrazana B. Diversity, distribution, and drivers of Polychromophilus infection in Malagasy bats. Malar J 2021; 20:157. [PMID: 33743716 PMCID: PMC7980569 DOI: 10.1186/s12936-021-03696-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 03/11/2021] [Indexed: 01/26/2023] Open
Abstract
Background Numerous studies have been undertaken to advance knowledge of apicomplexan parasites infecting vertebrates, including humans. Of these parasites, the genus Plasmodium has been most extensively studied because of the socio-economic and public health impacts of malaria. In non-human vertebrates, studies on malaria or malaria-like parasite groups have been conducted but information is far from complete. In Madagascar, recent studies on bat blood parasites indicate that three chiropteran families (Miniopteridae, Rhinonycteridae, and Vespertilionidae) are infected by the genus Polychromophilus with pronounced host specificity: Miniopterus spp. (Miniopteridae) harbour Polychromophilus melanipherus and Myotis goudoti (Vespertilionidae) is infected by Polychromophilus murinus. However, most of the individuals analysed in previous studies were sampled on the western and central portions of the island. The aims of this study are (1) to add new information on bat blood parasites in eastern Madagascar, and (2) to highlight biotic and abiotic variables driving prevalence across the island. Methods Fieldworks were undertaken from 2014 to 2016 in four sites in the eastern portion of Madagascar to capture bats and collect biological samples. Morphological and molecular techniques were used to identify the presence of haemosporidian parasites. Further, a MaxEnt modelling was undertaken using data from Polychromophilus melanipherus to identify variables influencing the presence of this parasite Results In total, 222 individual bats belonging to 17 species and seven families were analysed. Polychromophilus infections were identified in two families: Miniopteridae and Vespertilionidae. Molecular data showed that Polychromophilus spp. parasitizing Malagasy bats form a monophyletic group composed of three distinct clades displaying marked host specificity. In addition to P. melanipherus and P. murinus, hosted by Miniopterus spp. and Myotis goudoti, respectively, a novel Polychromophilus lineage was identified from a single individual of Scotophilus robustus. Based on the present study and the literature, different biotic and abiotic factors are shown to influence Polychromophilus infection in bats, which are correlated based on MaxEnt modelling. Conclusions The present study improves current knowledge on Polychromophilus blood parasites infecting Malagasy bats and confirms the existence of a novel Polychromophilus lineage in Scotophilus bats. Additional studies are needed to obtain additional material of this novel lineage to resolve its taxonomic relationship with known members of the genus. Further, the transmission mode of Polychromophilus in bats as well as its potential effect on bat populations should be investigated to complement the results provided by MaxEnt modelling and eventually provide a comprehensive picture of the biology of host-parasite interactions. Supplementary Information The online version contains supplementary material available at 10.1186/s12936-021-03696-0.
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Affiliation(s)
- Mercia Rasoanoro
- Institut Pasteur de Madagascar, Antananarivo 101, BP 1274, Ambatofotsikely, Madagascar.,Faculté des Sciences, Université d'Antananarivo, BP 706, Antananarivo 101, Antananarivo, Madagascar
| | - Steven M Goodman
- Association Vahatra, Antananarivo 101, BP 3972, Antananarivo, Madagascar.,Field Museum of Natural History, 1400 South Lake Shore Drive, 60605, Chicago, IL, USA
| | - Milijaona Randrianarivelojosia
- Institut Pasteur de Madagascar, Antananarivo 101, BP 1274, Ambatofotsikely, Madagascar.,Faculté des Sciences, Université de Toliara, 601, Toliara, Madagascar
| | | | - Koussay Dellagi
- Institut Pasteur (International Division), 25-28 Rue du Dr Roux, 75015, Paris, France
| | - Pablo Tortosa
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 97490, Sainte-Clotilde, La Réunion, France
| | - Beza Ramasindrazana
- Institut Pasteur de Madagascar, Antananarivo 101, BP 1274, Ambatofotsikely, Madagascar. .,Faculté des Sciences, Université d'Antananarivo, BP 706, Antananarivo 101, Antananarivo, Madagascar.
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9
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Rahelinirina S, Scobie K, Ramasindrazana B, Andrianaivoarimanana V, Rasoamalala F, Randriantseheno LN, Rakotoniaina JS, Gorgé O, Lambin X, Valade E, Telfer S, Rajerison M. Rodent control to fight plague: field assessment of methods based on rat density reduction. Integr Zool 2021; 16:868-885. [PMID: 33694282 PMCID: PMC9291132 DOI: 10.1111/1749-4877.12529] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Rodents represent a serious threat to food security and public health. The extent to which rodent control can mitigate the risk from rodent‐borne disease depends on both the effectiveness of control in reducing rodent abundance and the impact on disease epidemiology. Focusing on a plague‐endemic region of Madagascar, this study compared the effectiveness of 3 methods: live‐traps, snap‐traps, and rodenticides. Control interventions were implemented inside houses between May and October 2019. Tracking tiles monitored rodent abundance. Rodent fleas, the vector involved in plague transmission, were collected. Rodent populations consisted of Rattus rattus and Mus musculus. In terms of trap success, we found that our live‐trap regime was more effective than snap‐traps. While all 3 control strategies appeared to reduce in‐house rodent activity in the short term, we found no evidence of a longer‐term effect, with in‐house rodent abundance in treated sites comparable to non‐treatment sites by the following month. Endemic flea, Synopsyllus fonquerniei, is a key plague vector usually found on rats living outdoors. Although we found no evidence that its abundance inside houses increased following control, this may have been due to a lack of power caused by significant variation in S. fonquerniei abundance. The presence of S. fonquerniei in houses was more likely when S. fonquerniei abundance on outdoor rats was higher, which in turn correlated with high rat abundance. Our results emphasize that control strategies need to consider this connectivity between in‐house rat–flea populations and the outdoor populations, and any potential consequences for plague transmission.
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Affiliation(s)
| | - Kathryn Scobie
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | | | | | | | | | | | - Olivier Gorgé
- Institut de Recherche Biomédicale des Armées, Paris, France
| | - Xavier Lambin
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - Eric Valade
- Institut de Recherche Biomédicale des Armées, Paris, France
| | - Sandra Telfer
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
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10
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Vallès X, Stenseth NC, Demeure C, Horby P, Mead PS, Cabanillas O, Ratsitorahina M, Rajerison M, Andrianaivoarimanana V, Ramasindrazana B, Pizarro-Cerda J, Scholz HC, Girod R, Hinnebusch BJ, Vigan-Womas I, Fontanet A, Wagner DM, Telfer S, Yazdanpanah Y, Tortosa P, Carrara G, Deuve J, Belmain SR, D’Ortenzio E, Baril L. Human plague: An old scourge that needs new answers. PLoS Negl Trop Dis 2020; 14:e0008251. [PMID: 32853251 PMCID: PMC7451524 DOI: 10.1371/journal.pntd.0008251] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Yersinia pestis, the bacterial causative agent of plague, remains an important threat to human health. Plague is a rodent-borne disease that has historically shown an outstanding ability to colonize and persist across different species, habitats, and environments while provoking sporadic cases, outbreaks, and deadly global epidemics among humans. Between September and November 2017, an outbreak of urban pneumonic plague was declared in Madagascar, which refocused the attention of the scientific community on this ancient human scourge. Given recent trends and plague's resilience to control in the wild, its high fatality rate in humans without early treatment, and its capacity to disrupt social and healthcare systems, human plague should be considered as a neglected threat. A workshop was held in Paris in July 2018 to review current knowledge about plague and to identify the scientific research priorities to eradicate plague as a human threat. It was concluded that an urgent commitment is needed to develop and fund a strong research agenda aiming to fill the current knowledge gaps structured around 4 main axes: (i) an improved understanding of the ecological interactions among the reservoir, vector, pathogen, and environment; (ii) human and societal responses; (iii) improved diagnostic tools and case management; and (iv) vaccine development. These axes should be cross-cutting, translational, and focused on delivering context-specific strategies. Results of this research should feed a global control and prevention strategy within a "One Health" approach.
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Affiliation(s)
- Xavier Vallès
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Nils Chr. Stenseth
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway
- Key Laboratory for Earth System Modelling, Department of Earth System Science, Tsinghua University, Beijing, China
| | - Christian Demeure
- Yersinia Research Unit, National Reference Centre “Plague & Other Yersinioses,” WHO Collaborating Research and Reference Centre for Yersinia, Institut Pasteur, Paris, France
| | - Peter Horby
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
| | - Paul S. Mead
- Bacterial Diseases Branch, Division of Vector Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado, United States of America
| | - Oswaldo Cabanillas
- Control de Epidemia Desastres y Otras Emergencias Sanitarias, Oficina General de Epidemiologia, Ministerio de Salud, Perúu
| | - Mahery Ratsitorahina
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Minoarisoa Rajerison
- Plague Unit, Central Laboratory for Plague, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | | | - Beza Ramasindrazana
- Plague Unit, Central Laboratory for Plague, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Javier Pizarro-Cerda
- Yersinia Research Unit, National Reference Centre “Plague & Other Yersinioses,” WHO Collaborating Research and Reference Centre for Yersinia, Institut Pasteur, Paris, France
| | - Holger C. Scholz
- Reference Laboratory for Plague, Bundeswehr Institute of Microbiology, Munich, Germany
| | - Romain Girod
- Medical Entomology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - B. Joseph Hinnebusch
- Rocky Mountain Laboratories, National Institute of Health, National Institutes of Allergy and Infectious Diseases, Hamilton, Montana, United States of America
| | - Ines Vigan-Womas
- Immunology of Infectious Diseases Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Arnaud Fontanet
- Emerging Diseases Epidemiology Unit, Institut Pasteur, Paris, France
- PACRI unit, Conservatoire National des Arts et Métiers, Paris, France
| | - David M. Wagner
- The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America
| | - Sandra Telfer
- School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Yazdan Yazdanpanah
- REACTing, Inserm, Université Paris-Diderot, Sorbonne Paris Cité, Paris, France
- Service de Maladies Infectieuses et Tropicales, Hôpital Bichat-Claude Bernard, AP-HP, Paris, France
| | - Pablo Tortosa
- Université de La Réunion, Unité Mixte de Recherche Processus Infectieux en Milieu Insulaire Tropical, La Réunion, France
| | - Guia Carrara
- REACTing, Inserm, Université Paris-Diderot, Sorbonne Paris Cité, Paris, France
| | - Jane Deuve
- Department of International Affairs, Institut Pasteur, Paris, France
| | - Steven R. Belmain
- Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent, United Kingdom
| | - Eric D’Ortenzio
- REACTing, Inserm, Université Paris-Diderot, Sorbonne Paris Cité, Paris, France
- Service de Maladies Infectieuses et Tropicales, Hôpital Bichat-Claude Bernard, AP-HP, Paris, France
| | - Laurence Baril
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
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11
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Joffrin L, Goodman SM, Wilkinson DA, Ramasindrazana B, Lagadec E, Gomard Y, Le Minter G, Dos Santos A, Corrie Schoeman M, Sookhareea R, Tortosa P, Julienne S, Gudo ES, Mavingui P, Lebarbenchon C. Bat coronavirus phylogeography in the Western Indian Ocean. Sci Rep 2020; 10:6873. [PMID: 32327721 PMCID: PMC7181612 DOI: 10.1038/s41598-020-63799-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 03/31/2020] [Indexed: 12/28/2022] Open
Abstract
Bats provide key ecosystem services such as crop pest regulation, pollination, seed dispersal, and soil fertilization. Bats are also major hosts for biological agents responsible for zoonoses, such as coronaviruses (CoVs). The islands of the Western Indian Ocean are identified as a major biodiversity hotspot, with more than 50 bat species. In this study, we tested 1,013 bats belonging to 36 species from Mozambique, Madagascar, Mauritius, Mayotte, Reunion Island and Seychelles, based on molecular screening and partial sequencing of the RNA-dependent RNA polymerase gene. In total, 88 bats (8.7%) tested positive for coronaviruses, with higher prevalence in Mozambican bats (20.5% ± 4.9%) as compared to those sampled on islands (4.5% ± 1.5%). Phylogenetic analyses revealed a large diversity of α- and β-CoVs and a strong signal of co-evolution between CoVs and their bat host species, with limited evidence for host-switching, except for bat species sharing day roost sites. These results highlight that strong variation between islands does exist and is associated with the composition of the bat species community on each island. Future studies should investigate whether CoVs detected in these bats have a potential for spillover in other hosts.
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Affiliation(s)
- Léa Joffrin
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France.
| | - Steven M Goodman
- Association Vahatra, Antananarivo, Madagascar
- Field Museum of Natural History, Chicago, USA
| | - David A Wilkinson
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| | - Beza Ramasindrazana
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
- Association Vahatra, Antananarivo, Madagascar
- Beza Ramasindrazana, Institut Pasteur de Madagascar, BP 1274, Ambatofotsikely, Antananarivo, 101, Madagascar
| | - Erwan Lagadec
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| | - Yann Gomard
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| | - Gildas Le Minter
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| | | | - M Corrie Schoeman
- School of Life Sciences, University of Kwa-Zulu Natal, Kwa-Zulu Natal, South Africa
| | | | - Pablo Tortosa
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| | - Simon Julienne
- Seychelles Ministry of Health, Victoria, Mahe, Seychelles
| | | | - Patrick Mavingui
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| | - Camille Lebarbenchon
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France.
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Randremanana R, Andrianaivoarimanana V, Nikolay B, Ramasindrazana B, Paireau J, Ten Bosch QA, Rakotondramanga JM, Rahajandraibe S, Rahelinirina S, Rakotomanana F, Rakotoarimanana FM, Randriamampionona LB, Razafimbia V, De Dieu Randria MJ, Raberahona M, Mikaty G, Le Guern AS, Rakotonjanabelo LA, Ndiaye CF, Rasolofo V, Bertherat E, Ratsitorahina M, Cauchemez S, Baril L, Spiegel A, Rajerison M. Epidemiological characteristics of an urban plague epidemic in Madagascar, August-November, 2017: an outbreak report. Lancet Infect Dis 2019; 19:537-545. [PMID: 30930106 PMCID: PMC6483974 DOI: 10.1016/s1473-3099(18)30730-8] [Citation(s) in RCA: 75] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 10/01/2018] [Accepted: 11/21/2018] [Indexed: 01/14/2023]
Abstract
BACKGROUND Madagascar accounts for 75% of global plague cases reported to WHO, with an annual incidence of 200-700 suspected cases (mainly bubonic plague). In 2017, a pneumonic plague epidemic of unusual size occurred. The extent of this epidemic provides a unique opportunity to better understand the epidemiology of pneumonic plagues, particularly in urban settings. METHODS Clinically suspected plague cases were notified to the Central Laboratory for Plague at Institut Pasteur de Madagascar (Antananarivo, Madagascar), where biological samples were tested. Based on cases recorded between Aug 1, and Nov 26, 2017, we assessed the epidemiological characteristics of this epidemic. Cases were classified as suspected, probable, or confirmed based on the results of three types of diagnostic tests (rapid diagnostic test, molecular methods, and culture) according to 2006 WHO recommendations. FINDINGS 2414 clinically suspected plague cases were reported, including 1878 (78%) pneumonic plague cases, 395 (16%) bubonic plague cases, one (<1%) septicaemic case, and 140 (6%) cases with unspecified clinical form. 386 (21%) of 1878 notified pneumonic plague cases were probable and 32 (2%) were confirmed. 73 (18%) of 395 notified bubonic plague cases were probable and 66 (17%) were confirmed. The case fatality ratio was higher among confirmed cases (eight [25%] of 32 cases) than probable (27 [8%] of 360 cases) or suspected pneumonic plague cases (74 [5%] of 1358 cases) and a similar trend was seen for bubonic plague cases (16 [24%] of 66 confirmed cases, four [6%] of 68 probable cases, and six [2%] of 243 suspected cases). 351 (84%) of 418 confirmed or probable pneumonic plague cases were concentrated in Antananarivo, the capital city, and Toamasina, the main seaport. All 50 isolated Yersinia pestis strains were susceptible to the tested antibiotics. INTERPRETATION This predominantly urban plague epidemic was characterised by a large number of notifications in two major urban areas and an unusually high proportion of pneumonic forms, with only 23% having one or more positive laboratory tests. Lessons about clinical and biological diagnosis, case definition, surveillance, and the logistical management of the response identified in this epidemic are crucial to improve the response to future plague outbreaks. FUNDING US Agency for International Development, WHO, Institut Pasteur, US Department of Health and Human Services, Laboratoire d'Excellence Integrative Biology of Emerging Infectious Diseases, Models of Infectious Disease Agent Study of the National Institute of General Medical Sciences, AXA Research Fund, and the INCEPTION programme.
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Affiliation(s)
- Rindra Randremanana
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | | | - Birgit Nikolay
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR 2000, CNRS, Paris, France
| | | | - Juliette Paireau
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR 2000, CNRS, Paris, France
| | - Quirine Astrid Ten Bosch
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR 2000, CNRS, Paris, France
| | | | | | | | - Fanjasoa Rakotomanana
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Feno M Rakotoarimanana
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | | | - Vaoary Razafimbia
- Directorate of Health and Epidemiological Surveillance, Ministry of Public Health, Antananarivo, Madagascar
| | - Mamy Jean De Dieu Randria
- Department of Infectiology, University Hospital Joseph Raseta Befelatanana, Antananarivo, Madagascar
| | - Mihaja Raberahona
- Department of Infectiology, University Hospital Joseph Raseta Befelatanana, Antananarivo, Madagascar
| | - Guillain Mikaty
- Environment and Infectious Risks Research Unit, Laboratory for Urgent Response to Biological Threats (ERI-CIBU), Institut Pasteur, Paris, France
| | - Anne-Sophie Le Guern
- Yersinia Research Unit, National Reference Laboratory for Plague, WHO Collaborating Centre, Institut Pasteur, Paris, France
| | | | | | | | | | - Maherisoa Ratsitorahina
- Directorate of Health and Epidemiological Surveillance, Ministry of Public Health, Antananarivo, Madagascar
| | - Simon Cauchemez
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR 2000, CNRS, Paris, France.
| | - Laurence Baril
- Epidemiology and Clinical Research Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - André Spiegel
- Institut Pasteur de Madagascar, Antananarivo, Madagascar
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Ramasindrazana B, Goodman SM, Dsouli N, Gomard Y, Lagadec E, Randrianarivelojosia M, Dellagi K, Tortosa P. Polychromophilus spp. (Haemosporida) in Malagasy bats: host specificity and insights on invertebrate vectors. Malar J 2018; 17:318. [PMID: 30170583 PMCID: PMC6119311 DOI: 10.1186/s12936-018-2461-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Accepted: 08/17/2018] [Indexed: 12/03/2022] Open
Abstract
Background Bats are home to diverse haemosporidian parasites namely Plasmodium and Plasmodium-related. While information is available at a worldwide level, haemosporidian infection in bats from Madagascar is still scarce and recent changes in the taxonomy of the island’s bat fauna, particularly the description of several new species, require a reassessment of previously described patterns, including blood parasite ecology and vectorial transmission. Methods A sample representing seven of the nine known bat families and 31 of the 46 currently recognized taxa from Madagascar and collected in the western and central portions of the island were screened by PCR for the presence of Polychromophilus. In addition, Nycteribiidae flies parasitizing Miniopteridae and Vespertilionidae were screened for parasites with the aim to better understand aspects of vector transmission. Phylogenetic reconstruction using the mitochondrial cytochrome b encoding gene was used in a Bayesian analysis to examine the relationship between Polychromophilus recovered from Malagasy bats and those identified elsewhere. Results Polychromophilus infection was restricted to Miniopterus spp. (Miniopteridae), Myotis goudoti (Vespertilionidae), and Paratriaenops furculus (Rhinonycteridae), with an overall infection rate of 13.5%. Polychromophilus melanipherus was found infecting Miniopterus spp. and P. furculus, whereas Polychromophilus murinus was only recovered from M. goudoti. These two protozoan parasites species were also detected in bat flies species known to parasitize Miniopterus spp. and M. goudoti, respectively. Generalized linear model analyses were conducted to elucidate the effect of species and sex on haemoparasites infection in Miniopterus spp., which revealed that males have higher risk of infection than females and prevalence differed according to the considered Miniopterus host. Molecular screening of nycteribiid flies revealed three positive species for Polychromophilus spp., including Penicillidia sp. (cf. fulvida), Penicillidia leptothrinax, and Nycteribia stylidiopsis. These three fly species are known to parasitize Miniopterus spp. and M. goudoti and should be considered as potential vectors of Polychromophilus spp. Conclusion Phylogenetic analyses demonstrated the existence of at least four distinct clades within the genus Polychromophilus, two of which were documented in the present study. The screening of nycteribiid flies overlaid on the highly diversified genus Miniopterus, provides considerable insight into parasite transmission, with bat infection being associated with their roosting behaviour and the occurrence of specific arthropod vectors. Electronic supplementary material The online version of this article (10.1186/s12936-018-2461-8) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Beza Ramasindrazana
- UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Université de La Réunion, 97490, Sainte Clotilde, La Réunion, France. .,Association Vahatra, BP 3972, 101, Antananarivo, Madagascar. .,Institut Pasteur de Madagascar, BP 1274, Ambatofotsikely, 101, Antananarivo, Madagascar.
| | - Steven M Goodman
- Association Vahatra, BP 3972, 101, Antananarivo, Madagascar.,The Field Museum of Natural History, Chicago, IL, 60605, USA
| | - Najla Dsouli
- UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Université de La Réunion, 97490, Sainte Clotilde, La Réunion, France
| | - Yann Gomard
- UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Université de La Réunion, 97490, Sainte Clotilde, La Réunion, France
| | - Erwan Lagadec
- UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Université de La Réunion, 97490, Sainte Clotilde, La Réunion, France
| | - Milijaona Randrianarivelojosia
- Institut Pasteur de Madagascar, BP 1274, Ambatofotsikely, 101, Antananarivo, Madagascar.,Faculté des Sciences, Université de Toliara, 601, Toliara, Madagascar
| | - Koussay Dellagi
- UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Université de La Réunion, 97490, Sainte Clotilde, La Réunion, France.,Institut Pasteur (International Division), 25-28 Rue du Dr Roux, 75015, Paris, France
| | - Pablo Tortosa
- UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Université de La Réunion, 97490, Sainte Clotilde, La Réunion, France
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14
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Hoarau F, Le Minter G, Joffrin L, Schoeman MC, Lagadec E, Ramasindrazana B, Dos Santos A, Goodman SM, Gudo ES, Mavingui P, Lebarbenchon C. Bat Astrovirus in Mozambique. Virol J 2018; 15:104. [PMID: 29925396 PMCID: PMC6011250 DOI: 10.1186/s12985-018-1011-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 06/03/2018] [Indexed: 01/01/2023] Open
Abstract
Astroviruses (AstVs) are responsible for infection of a large diversity of mammalian and avian species, including bats, aquatic birds, livestock and humans. We investigated AstVs circulation in bats in Mozambique and Mayotte, a small island in the Comoros Archipelago located between east Africa and Madagascar. Biological material was collected from 338 bats and tested for the presence of the AstV RNA-dependent RNA-polymerase gene with a pan-AstV semi-nested polymerase chain reaction assay. None of the 79 samples obtained from Mayotte bats (Pteropus seychellensis comorensis and Chaerephon pusillus) tested positive; however, 20.1% of bats sampled in Mozambique shed AstVs at the time of sampling and significant interspecific variation in the proportion of positive bats was detected. Many AstVs sequences obtained from a given bat species clustered in different phylogenetic lineages, while others seem to reflect some level of host-virus association, but also with AstVs previously reported from Malagasy bats. Our findings support active circulation of a large diversity of AstVs in bats in the western Indian Ocean islands, including the southeastern African coast, and highlight the need for more detailed assessment of its risk of zoonotic transmission to human populations.
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Affiliation(s)
- Flora Hoarau
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France
| | - Gildas Le Minter
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France
| | - Léa Joffrin
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France
| | - M Corrie Schoeman
- School of Life Sciences, Biological Sciences Building, University of Kwa-Zulu Natal, South Ring Road, Westville Campus, Kwa-Zulu Natal, 3630, South Africa
| | - Erwan Lagadec
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France
| | - Beza Ramasindrazana
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France.,Association Vahatra, BP 3972, 101, Antananarivo, Madagascar.,Present Address: Institut Pasteur de Madagascar,Ambatofotsikely, 101, Antananarivo, Madagascar
| | | | - Steven M Goodman
- Association Vahatra, BP 3972, 101, Antananarivo, Madagascar.,Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, 60605, USA
| | | | - Patrick Mavingui
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France
| | - Camille Lebarbenchon
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical (PIMIT), INSERM 1187, CNRS 9192, IRD 249, 2 rue Maxime Rivière (GIP CYROI), 97490 Sainte-Clotilde, La Réunion, France.
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15
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Dietrich M, Gomard Y, Lagadec E, Ramasindrazana B, Le Minter G, Guernier V, Benlali A, Rocamora G, Markotter W, Goodman SM, Dellagi K, Tortosa P. Biogeography of Leptospira in wild animal communities inhabiting the insular ecosystem of the western Indian Ocean islands and neighboring Africa. Emerg Microbes Infect 2018; 7:57. [PMID: 29615623 PMCID: PMC5883017 DOI: 10.1038/s41426-018-0059-4] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 09/14/2017] [Accepted: 09/17/2017] [Indexed: 01/14/2023]
Abstract
Understanding the processes driving parasite assemblages is particularly important in the context of zoonotic infectious diseases. Leptospirosis is a widespread zoonotic bacterial infection caused by pathogenic species of the genus Leptospira. Despite a wide range of animal hosts, information is still lacking on the factors shaping Leptospira diversity in wild animal communities, especially in regions, such as tropical insular ecosystems, with high host species richness and complex biogeographical patterns. Using a large dataset (34 mammal species) and a multilocus approach at a regional scale, we analyzed the role of both host species diversity and geography in Leptospira genetic diversity in terrestrial small mammals (rodents, tenrecs, and shrews) and bats from 10 different islands/countries in the western Indian Ocean (WIO) and neighboring Africa. At least four Leptospira spp. (L. interrogans, L. borgpetersenii, L. kirschneri, and L. mayottensis) and several yet-unidentified genetic clades contributed to a remarkable regional Leptospira diversity, which was generally related to the local occurrence of the host species rather than the geography. In addition, the genetic structure patterns varied between Leptospira spp., suggesting different evolutionary histories in the region, which might reflect both in situ diversification of native mammals (for L. borgpetersenii) and the more recent introduction of non-native host species (for L. interrogans). Our data also suggested that host shifts occurred between bats and rodents, but further investigations are needed to determine how host ecology may influence these events.
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Affiliation(s)
- Muriel Dietrich
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France.
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France.
- Department of Medical Virology, Faculty of Health Sciences, Centre for Viral Zoonoses, University of Pretoria, Pretoria, 001, South Africa.
| | - Yann Gomard
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
| | - Erwan Lagadec
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
| | - Beza Ramasindrazana
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
- Institut Pasteur de Madagascar, 101, Antananarivo, Madagascar
| | - Gildas Le Minter
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
| | - Vanina Guernier
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
- Australian Institute for Tropical Health and Medicine (AITHM), Townsville, 4811, Australia
| | - Aude Benlali
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
| | - Gerard Rocamora
- Island Biodiversity & Conservation Center, University of Seychelles, Anse Royale PO Box 1348, Mahé, Seychelles
| | - Wanda Markotter
- Department of Medical Virology, Faculty of Health Sciences, Centre for Viral Zoonoses, University of Pretoria, Pretoria, 001, South Africa
| | - Steven M Goodman
- Field Museum of Natural History, Chicago, IL, 60605, USA
- Association Vahatra, 101, Antananarivo, Madagascar
| | - Koussay Dellagi
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
- Institut Pasteur (Direction Internationale), 75015, Paris, France
| | - Pablo Tortosa
- Université de La Réunion, UMR PIMIT (Unité Mixte Processus Infectieux en Milieu Insulaire Tropical), INSERM U1187, CNRS UMR 9192, IRD UMR 249, Plateforme CYROI, 2 rue Maxime Rivière, 97490, Sainte Clotilde, La Réunion, France
- CRVOI - Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Sainte Clotilde, 97490, La Réunion, France
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16
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Ramasindrazana B, Andrianaivoarimanana V, Rakotondramanga JM, Birdsell DN, Ratsitorahina M, Rajerison M. Pneumonic Plague Transmission, Moramanga, Madagascar, 2015. Emerg Infect Dis 2018; 23:521-524. [PMID: 28221119 PMCID: PMC5382734 DOI: 10.3201/eid2303.161406] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
During a pneumonic plague outbreak in Moramanga, Madagascar, we identified 4 confirmed, 1 presumptive, and 9 suspected plague case-patients. Human-to-human transmission among close contacts was high (reproductive number 1.44) and the case fatality rate was 71%. Phylogenetic analysis showed that the Yersinia pestis isolates belonged to group q3, different from the previous outbreak.
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Ramasindrazana B, Goodman SM, Gomard Y, Dick CW, Tortosa P. Hidden diversity of Nycteribiidae (Diptera) bat flies from the Malagasy region and insights on host-parasite interactions. Parasit Vectors 2017; 10:630. [PMID: 29284533 PMCID: PMC5747079 DOI: 10.1186/s13071-017-2582-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Accepted: 12/11/2017] [Indexed: 12/19/2022] Open
Abstract
Background We present information on Nycteribiidae flies parasitizing the bat families Pteropodidae, Miniopteridae and Vespertilionidae from the Malagasy Region, contributing insight into their diversity and host preference. Results Our phylogenetic analysis identified nine clusters of nycteribiid bat flies on Madagascar and the neighbouring Comoros Archipelago. Bat flies sampled from frugivorous bats of the family Pteropodidae are monoxenous: Eucampsipoda madagascariensis, E. theodori and Cyclopodia dubia appear wholly restricted to Rousettus madagascariensis, R. obliviosus and Eidolon dupreanum, respectively. Two different host preference patterns occurred in nycteribiids infecting insectivorous bats. Flies parasitizing bats of the genera Miniopterus (Miniopteridae) and Myotis (Vespertilionidae), namely Penicillidia leptothrinax, Penicillidia sp. and Nycteribia stylidiopsis, are polyxenous and showed little host preference, while those parasitizing the genera Pipistrellus and Scotophilus (both Vespertilionidae) and referable to Basilia spp., are monoxenous. Lastly, the inferred Bayesian phylogeny revealed that the genus Basilia, as currently configured, is paraphyletic. Conclusion This study provides new information on the differentiation of nycteribiid taxa, including undescribed species. Host preference is either strict as exemplified by flies parasitizing fruit bats, or more relaxed as found on some insectivorous bat species, possibly because of roost site sharing. Detailed taxonomic work is needed to address three undescribed nycteribiid taxa found on Pipistrellus and Scotophilus, tentatively allocated to the genus Basilia, but possibly warranting different generic allocation. Electronic supplementary material The online version of this article (10.1186/s13071-017-2582-x) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Beza Ramasindrazana
- Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Plateforme technologique CYROI, Sainte Clotilde, La Réunion, France. .,Université de La Réunion, CNRS 9192, INSERM U1187, IRD 249, Unité Mixte Processus Infectieux en Milieu Insulaire Tropical (PIMIT), Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France. .,Association Vahatra, 101, Antananarivo, Madagascar. .,Institut Pasteur de Madagascar, Ambatofotsikely, 101, Antananarivo, Madagascar.
| | - Steven M Goodman
- Association Vahatra, 101, Antananarivo, Madagascar.,Field Museum of Natural History, Chicago, IL, 60605, USA
| | - Yann Gomard
- Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Plateforme technologique CYROI, Sainte Clotilde, La Réunion, France.,Université de La Réunion, CNRS 9192, INSERM U1187, IRD 249, Unité Mixte Processus Infectieux en Milieu Insulaire Tropical (PIMIT), Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
| | - Carl W Dick
- Field Museum of Natural History, Chicago, IL, 60605, USA.,Department of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA
| | - Pablo Tortosa
- Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, Plateforme technologique CYROI, Sainte Clotilde, La Réunion, France.,Université de La Réunion, CNRS 9192, INSERM U1187, IRD 249, Unité Mixte Processus Infectieux en Milieu Insulaire Tropical (PIMIT), Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
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Mélade J, McCulloch S, Ramasindrazana B, Lagadec E, Turpin M, Pascalis H, Goodman SM, Markotter W, Dellagi K. Serological Evidence of Lyssaviruses among Bats on Southwestern Indian Ocean Islands. PLoS One 2016; 11:e0160553. [PMID: 27501458 PMCID: PMC4976896 DOI: 10.1371/journal.pone.0160553] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Accepted: 07/21/2016] [Indexed: 12/28/2022] Open
Abstract
We provide serological evidence of lyssavirus circulation among bats on southwestern Indian Ocean (SWIO) islands. A total of 572 bats belonging to 22 species were collected on Anjouan, Mayotte, La Réunion, Mauritius, Mahé and Madagascar and screened by the Rapid Fluorescent Focus Inhibition Test for the presence of neutralising antibodies against the two main rabies related lyssaviruses circulating on the African continent: Duvenhage lyssavirus (DUVV) and Lagos bat lyssavirus (LBV), representing phylogroups I and II, respectively. A total of 97 and 42 sera were able to neutralise DUVV and LBV, respectively. No serum neutralised both DUVV and LBV but most DUVV-seropositive bats (n = 32/220) also neutralised European bat lyssavirus 1 (EBLV-1) but not Rabies lyssavirus (RABV), the prototypic lyssavirus of phylogroup I. These results highlight that lyssaviruses belonging to phylogroups I and II circulate in regional bat populations and that the putative phylogroup I lyssavirus is antigenically closer to DUVV and EBLV-1 than to RABV. Variation between bat species, roost sites and bioclimatic regions were observed. All brain samples tested by RT-PCR specific for lyssavirus RNA were negative.
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Affiliation(s)
- Julien Mélade
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT «Processus Infectieux en Milieu Insulaire Tropical», INSERM U1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), Sainte-Clotilde, La Réunion, France
| | - Stewart McCulloch
- Center for Viral Zoonoses, Department of Medical Virology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa
| | - Beza Ramasindrazana
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT «Processus Infectieux en Milieu Insulaire Tropical», INSERM U1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), Sainte-Clotilde, La Réunion, France
- Association Vahatra, Antananarivo, Madagascar
- Institut Pasteur de Madagascar, Antananarivo, Madagascar
| | - Erwan Lagadec
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT «Processus Infectieux en Milieu Insulaire Tropical», INSERM U1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), Sainte-Clotilde, La Réunion, France
| | - Magali Turpin
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT «Processus Infectieux en Milieu Insulaire Tropical», INSERM U1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), Sainte-Clotilde, La Réunion, France
| | - Hervé Pascalis
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT «Processus Infectieux en Milieu Insulaire Tropical», INSERM U1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), Sainte-Clotilde, La Réunion, France
| | - Steven M. Goodman
- Association Vahatra, Antananarivo, Madagascar
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Wanda Markotter
- Center for Viral Zoonoses, Department of Medical Virology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa
| | - Koussay Dellagi
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT «Processus Infectieux en Milieu Insulaire Tropical», INSERM U1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), Sainte-Clotilde, La Réunion, France
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Mélade J, Wieseke N, Ramasindrazana B, Flores O, Lagadec E, Gomard Y, Goodman SM, Dellagi K, Pascalis H. An eco-epidemiological study of Morbilli-related paramyxovirus infection in Madagascar bats reveals host-switching as the dominant macro-evolutionary mechanism. Sci Rep 2016; 6:23752. [PMID: 27068130 PMCID: PMC4828640 DOI: 10.1038/srep23752] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Accepted: 03/08/2016] [Indexed: 11/09/2022] Open
Abstract
An eco-epidemiological investigation was carried out on Madagascar bat communities to better understand the evolutionary mechanisms and environmental factors that affect virus transmission among bat species in closely related members of the genus Morbillivirus, currently referred to as Unclassified Morbilli-related paramyxoviruses (UMRVs). A total of 947 bats were investigated originating from 52 capture sites (22 caves, 18 buildings, and 12 outdoor sites) distributed over different bioclimatic zones of the island. Using RT-PCR targeting the L-polymerase gene of the Paramyxoviridae family, we found that 10.5% of sampled bats were infected, representing six out of seven families and 15 out of 31 species analyzed. Univariate analysis indicates that both abiotic and biotic factors may promote viral infection. Using generalized linear modeling of UMRV infection overlaid on biotic and abiotic variables, we demonstrate that sympatric occurrence of bats is a major factor for virus transmission. Phylogenetic analyses revealed that all paramyxoviruses infecting Malagasy bats are UMRVs and showed little host specificity. Analyses using the maximum parsimony reconciliation tool CoRe-PA, indicate that host-switching, rather than co-speciation, is the dominant macro-evolutionary mechanism of UMRVs among Malagasy bats.
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Affiliation(s)
- Julien Mélade
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT “Processus Infectieux en Milieu Insulaire Tropical”, INSERM U1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), IRD – BP 50172, 97492 Sainte-Clotilde, La Réunion, France
| | - Nicolas Wieseke
- University of Leipzig, Department of Computer Science, Augustusplatz 10, D-04109 Leipzig, Germany
| | - Beza Ramasindrazana
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT “Processus Infectieux en Milieu Insulaire Tropical”, INSERM U1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), IRD – BP 50172, 97492 Sainte-Clotilde, La Réunion, France
- Association Vahatra, BP 3972, Antananarivo 101, Madagascar
- Institut Pasteur de Madagascar, BP 1274 Ambohitrakely, Antananarivo 101, Madagascar
| | - Olivier Flores
- UMR C53 CIRAD, Peuplements Végétaux et Bioagresseurs en Milieu Tropical, 7 chemin de l’IRAT, 97410 St Pierre, France
- Université de La Réunion, 15 Avenue René Cassin, 97400 Saint-Denis, France
| | - Erwan Lagadec
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT “Processus Infectieux en Milieu Insulaire Tropical”, INSERM U1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), IRD – BP 50172, 97492 Sainte-Clotilde, La Réunion, France
| | - Yann Gomard
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT “Processus Infectieux en Milieu Insulaire Tropical”, INSERM U1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), IRD – BP 50172, 97492 Sainte-Clotilde, La Réunion, France
| | - Steven M. Goodman
- Association Vahatra, BP 3972, Antananarivo 101, Madagascar
- Field Museum of Natural History, 1400 S. Lake Shore Dr, Chicago, IL 60605-2496, USA
| | - Koussay Dellagi
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT “Processus Infectieux en Milieu Insulaire Tropical”, INSERM U1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), IRD – BP 50172, 97492 Sainte-Clotilde, La Réunion, France
| | - Hervé Pascalis
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT “Processus Infectieux en Milieu Insulaire Tropical”, INSERM U1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, La Réunion, France
- Institut de Recherche pour le Développement (IRD), IRD – BP 50172, 97492 Sainte-Clotilde, La Réunion, France
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Gomard Y, Dietrich M, Wieseke N, Ramasindrazana B, Lagadec E, Goodman SM, Dellagi K, Tortosa P. Malagasy bats shelter a considerable genetic diversity of pathogenic Leptospira suggesting notable host-specificity patterns. FEMS Microbiol Ecol 2016; 92:fiw037. [PMID: 26902801 DOI: 10.1093/femsec/fiw037] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/17/2016] [Indexed: 01/08/2023] Open
Abstract
Pathogenic Leptospira are the causative agents of leptospirosis, a disease of global concern with major impact in tropical regions. Despite the importance of this zoonosis for human health, the evolutionary and ecological drivers shaping bacterial communities in host reservoirs remain poorly investigated. Here, we describe Leptospira communities hosted by Malagasy bats, composed of mostly endemic species, in order to characterize host-pathogen associations and investigate their evolutionary histories. We screened 947 individual bats (representing 31 species, 18 genera and seven families) for Leptospira infection and subsequently genotyped positive samples using three different bacterial loci. Molecular identification showed that these Leptospira are notably diverse and include several distinct lineages mostly belonging to Leptospira borgpetersenii and L. kirschneri. The exploration of the most probable host-pathogen evolutionary scenarios suggests that bacterial genetic diversity results from a combination of events related to the ecology and the evolutionary history of their hosts. Importantly, based on the data set presented herein, the notable host-specificity we have uncovered, together with a lack of geographical structuration of bacterial genetic diversity, indicates that the Leptospira community at a given site depends on the co-occurring bat species assemblage. The implications of such tight host-specificity on the epidemiology of leptospirosis are discussed.
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Affiliation(s)
- Yann Gomard
- Centre for Research and Surveillance of Emerging Diseases in the Indian Ocean (CRVOI), 97490 Sainte Clotilde, La Réunion, France UMR PIMIT, 'Infectious Processes in Insular Ecosystems', University of La Réunion, INSERM U 1187, CNRS 9192, IRD 249. Research platform of CYROI, 97490 Sainte Clotilde, La Réunion, France
| | - Muriel Dietrich
- Centre for Research and Surveillance of Emerging Diseases in the Indian Ocean (CRVOI), 97490 Sainte Clotilde, La Réunion, France Department of Microbiology and Plant Pathology, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria 0002, South Africa
| | - Nicolas Wieseke
- Parallel Computing and Complex Systems Group, Faculty of Mathematics and Computer Science, University of Leipzig, Augustusplatz 10, D-04109 Leipzig, Germany
| | - Beza Ramasindrazana
- Centre for Research and Surveillance of Emerging Diseases in the Indian Ocean (CRVOI), 97490 Sainte Clotilde, La Réunion, France UMR PIMIT, 'Infectious Processes in Insular Ecosystems', University of La Réunion, INSERM U 1187, CNRS 9192, IRD 249. Research platform of CYROI, 97490 Sainte Clotilde, La Réunion, France Association Vahatra, BP 3972, Antananarivo 101, Madagascar
| | - Erwan Lagadec
- Centre for Research and Surveillance of Emerging Diseases in the Indian Ocean (CRVOI), 97490 Sainte Clotilde, La Réunion, France UMR PIMIT, 'Infectious Processes in Insular Ecosystems', University of La Réunion, INSERM U 1187, CNRS 9192, IRD 249. Research platform of CYROI, 97490 Sainte Clotilde, La Réunion, France
| | - Steven M Goodman
- Association Vahatra, BP 3972, Antananarivo 101, Madagascar Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605-2496, USA
| | - Koussay Dellagi
- Centre for Research and Surveillance of Emerging Diseases in the Indian Ocean (CRVOI), 97490 Sainte Clotilde, La Réunion, France UMR PIMIT, 'Infectious Processes in Insular Ecosystems', University of La Réunion, INSERM U 1187, CNRS 9192, IRD 249. Research platform of CYROI, 97490 Sainte Clotilde, La Réunion, France Institute for Research for Development (IRD), 97490 Sainte Clotilde, La Réunion, France
| | - Pablo Tortosa
- Centre for Research and Surveillance of Emerging Diseases in the Indian Ocean (CRVOI), 97490 Sainte Clotilde, La Réunion, France UMR PIMIT, 'Infectious Processes in Insular Ecosystems', University of La Réunion, INSERM U 1187, CNRS 9192, IRD 249. Research platform of CYROI, 97490 Sainte Clotilde, La Réunion, France
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Ramasindrazana B, Dellagi K, Lagadec E, Randrianarivelojosia M, Goodman SM, Tortosa P. Diversity, Host Specialization, and Geographic Structure of Filarial Nematodes Infecting Malagasy Bats. PLoS One 2016; 11:e0145709. [PMID: 26751792 PMCID: PMC4709050 DOI: 10.1371/journal.pone.0145709] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Accepted: 12/08/2015] [Indexed: 12/26/2022] Open
Abstract
We investigated filarial infection in Malagasy bats to gain insights into the diversity of these parasites and explore the factors shaping their distribution. Samples were obtained from 947 individual bats collected from 52 sites on Madagascar and representing 31 of the 44 species currently recognized on the island. Samples were screened for the presence of micro- and macro-parasites through both molecular and morphological approaches. Phylogenetic analyses showed that filarial diversity in Malagasy bats formed three main groups, the most common represented by Litomosa spp. infecting Miniopterus spp. (Miniopteridae); a second group infecting Pipistrellus cf. hesperidus (Vespertilionidae) embedded within the Litomosoides cluster, which is recognized herein for the first time from Madagascar; and a third group composed of lineages with no clear genetic relationship to both previously described filarial nematodes and found in M. griveaudi, Myotis goudoti, Neoromicia matroka (Vespertilionidae), Otomops madagascariensis (Molossidae), and Paratriaenops furculus (Hipposideridae). We further analyzed the infection rates and distribution pattern of Litomosa spp., which was the most diverse and prevalent filarial taxon in our sample. Filarial infection was disproportionally more common in males than females in Miniopterus spp., which might be explained by some aspect of roosting behavior of these cave-dwelling bats. We also found marked geographic structure in the three Litomosa clades, mainly linked to bioclimatic conditions rather than host-parasite associations. While this study demonstrates distinct patterns of filarial nematode infection in Malagasy bats and highlights potential drivers of associated geographic distributions, future work should focus on their alpha taxonomy and characterize arthropod vectors.
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Affiliation(s)
- Beza Ramasindrazana
- Centre de Recherche et de Veille sur les maladies émergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM U 1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, 97490 Sainte Clotilde, Saint-Denis, La Réunion, France
- Association Vahatra, Antananarivo, Madagascar
- * E-mail:
| | - Koussay Dellagi
- Centre de Recherche et de Veille sur les maladies émergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM U 1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, 97490 Sainte Clotilde, Saint-Denis, La Réunion, France
| | - Erwan Lagadec
- Centre de Recherche et de Veille sur les maladies émergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM U 1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, 97490 Sainte Clotilde, Saint-Denis, La Réunion, France
| | | | - Steven M. Goodman
- Association Vahatra, Antananarivo, Madagascar
- The Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Pablo Tortosa
- Centre de Recherche et de Veille sur les maladies émergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Sainte Clotilde, La Réunion, France
- Université de La Réunion, UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM U 1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, 97490 Sainte Clotilde, Saint-Denis, La Réunion, France
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Ramasindrazana B, Rakotondramanana CF, Schoeman MC, Goodman SM. Evidence of Echolocation Call Divergence inHipposideros commersoniSensu Stricto (E. Geoffroy, 1803) from Madagascar and Correlation with Body Size. Acta Chiropterologica 2015. [DOI: 10.3161/15081109acc2015.17.1.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Goodman SM, Rakotondramanana CF, Ramasindrazana B, Kearney T, Monadjem A, Schoeman MC, Taylor PJ, Naughton K, Appleton B. An integrative approach to characterize Malagasy bats of the subfamily Vespertilioninae Gray, 1821, with the description of a new species ofHypsugo. Zool J Linn Soc 2015. [DOI: 10.1111/zoj.12223] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Steven M. Goodman
- Field Museum of Natural History; 1400 South Lake Shore Drive Chicago IL 60605 USA
- Association Vahatra; BP 3972, Antananarivo (101), Madagascar and Département de Biologie Animale; Université d'Antananarivo; BP 906 Antananarivo (101) Madagascar
| | - Claude Fabienne Rakotondramanana
- Association Vahatra; BP 3972, Antananarivo (101), Madagascar and Département de Biologie Animale; Université d'Antananarivo; BP 906 Antananarivo (101) Madagascar
| | - Beza Ramasindrazana
- Association Vahatra; BP 3972, Antananarivo (101), Madagascar and Département de Biologie Animale; Université d'Antananarivo; BP 906 Antananarivo (101) Madagascar
- Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien; 2 rue Maxime Rivière 97490 Sainte Clotilde La Réunion France
| | - Teresa Kearney
- Ditsong Museum of Natural History; PO Box 413 Pretoria 0001 South Africa
- School of Animal, Plant and Environmental Sciences; University of the Witwatersrand; Private Bag 3 Wits 2050 South Africa
| | - Ara Monadjem
- All Out Africa Research Unit; Department of Biological Sciences; University of Swaziland; Private Bag 4 Kwaluseni Swaziland
- Department of Zoology & Entomology; Mammal Research Institute; University of Pretoria; Private Bag 20 Hatfield 0028 Pretoria South Africa
| | - M. Corrie Schoeman
- School of Life Sciences; University of Kwa-Zulu Natal; Biological Sciences Building South Ring Road Westville Campus Durban Kwa-Zulu Natal 3630 South Africa
| | - Peter J. Taylor
- SARChI Chair on Biodiversity & Change; School of Mathematical & Natural Sciences; University of Venda; Private Bag X5050 Thohoyandou 0950 South Africa
| | - Kate Naughton
- Department of Sciences; Museum Victoria; GPO Box 666 Melbourne Vic. 3000 Australia
| | - Belinda Appleton
- School of Life and Environmental Sciences; Deakin University; Melbourne Vic. 3216 Australia
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Goodman SM, Ramasindrazana B, Naughton KM, Appleton B. Description of a new species of the Miniopterus aelleni group (Chiroptera: Miniopteridae) from upland areas of central and northern Madagascar. Zootaxa 2015; 3936:538-58. [PMID: 25947452 DOI: 10.11646/zootaxa.3936.4.4] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Indexed: 11/04/2022]
Abstract
Recent molecular genetic work, combined with morphological comparisons, on Malagasy members of the bat genus Miniopterus (Family Miniopteridae), has uncovered a number of cryptic species. Based on recently collected specimens and associated tissues, we examine patterns of variation in M. aelleni, the holotype of which comes from Ankarana in northern Madagascar. Using molecular genetic (mitochondrial cytochrome b) and morphological characters we describe a new species, M. ambohitrensis sp. nov. In northern Madagascar, M. ambohitrensis and M. aelleni are allopatric, but occur in relatively close geographical contact (approximately 40 km direct line distance) with M. ambohitrensis found at Montagne d'Ambre in montane humid forest and M. aelleni sensu stricto at Ankarana in dry deciduous forest. Morphologically, this new taxon is differentiated from M. aelleni based on pelage coloration, external measurements, craniodental differences, and tragus shape. Comparisons using 725 bp of cytochrome b found a divergence of 1.1% within M. aelleni sensu stricto, 0.8% within M. ambohitrensis, and 3.3% between these two clades. The two sister species do not demonstrate acoustical differences based on recordings made in a flight cage. Miniopterus ambohitrensis is known from four localities in the northern and central portions of Madagascar, all from montane regions and across an elevational range from about 800 to 1600 m; its calculated "Extent of occurrence" is 15,143 km2. It is possible that this species is at least partially migratory.
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Affiliation(s)
- Steven M Goodman
- Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, Illinois 60605, USA. Association Vahatra, BP 3972, Antananarivo (101), Madagascar.;
| | - Beza Ramasindrazana
- Association Vahatra, BP 3972, Antananarivo (101), Madagascar. Département de Biologie Animale, Faculté des Sciences, Université d'Antananarivo, BP 906, Antananarivo (101), Madagascar 4Centre de Recherche et de Veille sur les maladies émergentes dans l'Océan Indien, 2 rue Maxime Rivière, 97490 Sainte Clotilde, La Réunion, France Institut de Recherche pour le Développement, 97492 Sainte Clotilde, La Réunion, France;
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Dietrich M, Wilkinson DA, Benlali A, Lagadec E, Ramasindrazana B, Dellagi K, Tortosa P. Leptospira and paramyxovirus infection dynamics in a bat maternity enlightens pathogen maintenance in wildlife. Environ Microbiol 2015; 17:4280-9. [PMID: 25580582 DOI: 10.1111/1462-2920.12766] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2014] [Revised: 11/17/2014] [Accepted: 11/18/2014] [Indexed: 01/26/2023]
Abstract
Bats are reservoirs for several zoonotic pathogens of medical importance; however, infection dynamics of pathogens in wild bat populations remain poorly understood. Here, we examine the influence of host crowding and population age structure on pathogen transmission and diversity in bat populations. Focusing on two pathogen taxa of medical importance, Leptospira bacteria and paramyxoviruses, we monitored host population and pathogen shedding dynamics within a maternity colony of the tropical bat species Mormopterus francoismoutoui, endemic to Réunion Island. Our data reveal astonishingly similar infection dynamics for Leptospira and paramyxoviruses, with infection peaks during late pregnancy and 2 months after the initial birth pulse. Furthermore, although co-infection occurs frequently during the peaks of transmission, the patterns do not suggest any interaction between the two pathogens. Partial sequencing reveals a unique bat-specific Leptospira strain contrasting with the co-circulation of four separate paramyxovirus lineages along the whole breeding period. Patterns of infection highlight the importance of host crowding in pathogen transmission and suggest that most bats developed immune response and stop excreting pathogens. Our results support that bat maternity colonies may represent hot spots of transmission for bacterial and viral infectious agents, and highlight how seasonality can be an important determinant of host-parasite interactions and disease emergence.
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Affiliation(s)
- Muriel Dietrich
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Université de La Réunion, France
| | - David A Wilkinson
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Université de La Réunion, France
| | - Aude Benlali
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Université de La Réunion, France
| | - Erwan Lagadec
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Institut de Recherche pour le Développement, Sainte Clotilde, France
| | - Beza Ramasindrazana
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Institut de Recherche pour le Développement, Sainte Clotilde, France
| | - Koussay Dellagi
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Institut de Recherche pour le Développement, Sainte Clotilde, France
| | - Pablo Tortosa
- Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien, France.,Université de La Réunion, France.,Joint Chair Centre National de la Recherche Scientifique-Université de La Réunion, Sainte Clotilde, France
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Ramasindrazana B, Goodman SM, Rakotondramanana CF, Schoeman MC. Morphological and Echolocation Call Variation in Malagasy Trident Bats,TriaenopsDobson, 1871 (Chiroptera: Hipposideridae). Acta Chiropterologica 2013. [DOI: 10.3161/150811013x679053] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Tortosa P, Dsouli N, Gomard Y, Ramasindrazana B, Dick CW, Goodman SM. Evolutionary history of Indian Ocean nycteribiid bat flies mirroring the ecology of their hosts. PLoS One 2013; 8:e75215. [PMID: 24086470 PMCID: PMC3785519 DOI: 10.1371/journal.pone.0075215] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2013] [Accepted: 08/11/2013] [Indexed: 11/19/2022] Open
Abstract
Bats and their parasites are increasingly investigated for their role in maintenance and transmission of potentially emerging pathogens. The islands of the western Indian Ocean hold nearly 50 bat species, mostly endemic and taxonomically well studied. However, investigation of associated viral, bacterial, and external parasites has lagged behind. In the case of their ectoparasites, more detailed information should provide insights into the evolutionary history of their hosts, as well as pathogen cycles in these wild animals. Here we investigate species of Nycteribiidae, a family of obligate hematophagous wingless flies parasitizing bats. Using morphological and molecular approaches, we describe fly species diversity sampled on Madagascar and the Comoros for two cave-roosting bat genera with contrasting ecologies: Miniopterus and Rousettus. Within the sampling area, 11 endemic species of insect-feeding Miniopterus occur, two of which are common to Madagascar and Comoros, while fruit-consuming Rousettus are represented by one species endemic to each of these zones. Morphological and molecular characterization of flies reveals that nycteribiids associated with Miniopterus bats comprise three species largely shared by most host species. Flies of M. griveaudi, one of the two bats found on Madagascar and certain islands in the Comoros, belong to the same taxon, which accords with continued over-water population exchange of this bat species and the lack of inter-island genetic structuring. Flies parasitizing Rousettus belong to two distinct species, each associated with a single host species, again in accordance with the distribution of each endemic bat species.
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Affiliation(s)
- Pablo Tortosa
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Ste Clotilde, La Réunion, France
- Université de La Réunion, Ste Clotilde, La Réunion, France
| | - Najla Dsouli
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Ste Clotilde, La Réunion, France
- Institut de Recherche pour le Développement, Sainte Clotilde, La Réunion, France
| | - Yann Gomard
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Ste Clotilde, La Réunion, France
- Université de La Réunion, Ste Clotilde, La Réunion, France
- Institut de Recherche pour le Développement, Sainte Clotilde, La Réunion, France
| | - Beza Ramasindrazana
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l’Océan Indien, Plateforme de Recherche CYROI, Ste Clotilde, La Réunion, France
- Université de La Réunion, Ste Clotilde, La Réunion, France
- Institut de Recherche pour le Développement, Sainte Clotilde, La Réunion, France
| | - Carl W. Dick
- Department of Biology, Western Kentucky University, Bowling Green, Kentucky, United States of America
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Steven M. Goodman
- Field Museum of Natural History, Chicago, Illinois, United States of America
- Association Vahatra, Antananarivo, Madagasca
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Lagadec E, Gomard Y, Guernier V, Dietrich M, Pascalis H, Temmam S, Ramasindrazana B, Goodman SM, Tortosa P, Dellagi K. Pathogenic Leptospira spp. in bats, Madagascar and Union of the Comoros. Emerg Infect Dis 2013; 18:1696-8. [PMID: 23017768 PMCID: PMC3471613 DOI: 10.3201/eid1810.111898] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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