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Ayaz M, Gündoğdu Ö, Aytaç S, Erdem B, Çiftçi H, Erdogdu Y. Microwave-Assisted Synthesis, Characterizations, Antimicrobial Activities, and DFT Studies on Some Pyridine Derived Schiff Bases. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Erdem B, Kapti HB. "The effect of two different intravitreal injection techniques on frequency of vitreous reflux and on treatment response in neovascular AMD patients". J Fr Ophtalmol 2022; 45:405-412. [PMID: 35093263 DOI: 10.1016/j.jfo.2021.10.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/28/2021] [Accepted: 10/05/2021] [Indexed: 11/25/2022]
Abstract
PURPOSE To determine the effect of two distinct intravitreal injection (IVI) techniques on the frequency of vitreous reflux (VR) and on treatment response at cumulative dosages in neovascular age-related macular degeneration (nAMD) patients. PATIENTS AND METHODS Ninety-three eyes of 93 nAMD patients were included in the study. IVI was performed in 47 eyes using the straight technique (ST) and 46 eyes with the tunneled technique (TT). Patients received three loading doses of intravitreal bevacizumab, and substantial VR was noted for each IVI. Central (CMT), 1mm (MT1), and 3mm (MT3) macular thicknesses were measured before and after treatment. VR frequency and treatment response were compared in both groups, and correlation analysis was performed. RESULTS Post-treatment VR was seen in 91 of 141 IVI with the ST and 33 of 138 IVI with the TT. The decrease in CMT, MT1, and MT3 after treatment with the ST was 121.4±92.5μm, 65.3±50.6μm, 28.8±30.8μm, respectively, and with the TT was 114.0±97.5μm, 67.8±72.6μm, and 27.1±31.4μm, respectively. The ST substantially increased the rate of VR compared to the TT (P<0.001), whereas the decrease in CMT, MT1, and MT3 did not vary significantly (P>0.05). There was no correlation between VR rate and decreases in CMT, MT1, or MT3 (P>0.05). CONCLUSIONS According to our findings, the ST resulted in a higher frequency of VR than the TT, but VR did not affect the treatment response, despite multiple doses. Complication rates were negligible with both approaches. As a result, it appears that practitioners may use either IVI approach.
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Affiliation(s)
- B Erdem
- Department of Ophthalmology, Ordu University Faculty of Medicine, Ordu 52200, Turkey.
| | - H B Kapti
- Department of Ophthalmology, Ordu University Faculty of Medicine, Ordu 52200, Turkey
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Dolapçı İ, Tekeli A, Şahin F, Erdem B. [Molecular characterization of Salmonella enterica serovar Typhimurium strains isolated from humans in Turkey]. MIKROBIYOL BUL 2016; 49:502-12. [PMID: 26649408 DOI: 10.5578/mb.9940] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Multidrug resistant (MDR) Salmonella infections, especially infections due to Salmonella Typhimurium DT104 phage type strains are an important public health issue in many parts of the world. S.Typhimurium is the most common serotype isolated from clinical samples in Turkey but we have limited data about the phage types of these isolates. The aims of this study were to find out whether these MDR S.Typhimurium isolates are DT104 phage type isolates and have class 1 integrons and to investigate the relationships of these characteristics between plasmid and pulsed field gel electrophoresis (PFGE) profiles. A total of 66 S.Typhimurium stock strains selected from Enterobacteria Laboratory culture collections of Ankara University School of Medicine, Department of Medical Microbiology were investigated by plasmid profile analysis (PPA) and PFGE with the use of XbaI and SpeI enzymes. The presence of class 1 integrons and the phage type 104 were investigated by polymerase chain reaction (PCR). The strains used in the study were sporadically isolated cases from seven provinces after year 2000 with ACSSuT (63), ACGSSuTT/S (1), ACSSuTT/S (1) and ASSuTT/S (1) resistance types [ampicillin (A), chloramphenicol (C), gentamicin (G), streptomycin (S), sulphonamide (Su), tetracycline (T), trimethoprim/sulfamethoxazole (T/S)]. Of the isolates 65 were found as DT104 phage type. Forty-three S.Typhimurium DT104 isolates that carry class 1 integrons had five different bands between 350-1600 base pairs (bp); all of the isolates harbored 1-4 plasmids with sizes ranging from 1.0-180 kbp and 62 isolates had 90 kbp plasmid which was serotype specific and virulence related. S.Typhimurium DT104 isolates were grouped into five (X1-X5) and seven (S1-S7) profiles with XbaI and SpeI enzymes, respectively. When the profiles of the two enzymes were evaluated, 58 of the 65 (89.2%) isolates showed similar (X1.S1) profile. The molecular characteristics of the most S.Typhimurium isolates were clustered in similar groups when class 1 integron, plasmid and PFGE types were analyzed together. In this study we showed that nearly all S.Typhimurium isolates with five drug resistance pattern (ACSSuT) were DT104 isolates. PFGE profiles of these sporadic isolates suggested that they were epidemiologically related.
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Affiliation(s)
- İştar Dolapçı
- Ankara University School of Medicine, Department of Medical Microbiology, Ankara, Turkey.
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Saran B, Erdem B, Tekeli FA, Sahin F, Aysev AD. [Characterization of Shigella strains isolated in ankara, Turkey by antimicrobial resistance models, plasmid profile analysis and pulsed-field gel electrophoresis]. MIKROBIYOL BUL 2016; 47:35-48. [PMID: 23390901 DOI: 10.5578/mb.4438] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Shigella is one of the most important causative agents of diarrhea especially in childhood. Since man is the main reservoir of Shigella and human to human transmission is possible, Shigella can easily spread in public and cause outbreaks. In this study, a total of 60 Shigella strains isolated in Ankara, Turkey by years 2001, 2008 and 2009 were investigated by their antimicrobial susceptibility profiles, plasmid profile analysis (PPA) and pulsed-field gel electrophoresis (PFGE). For epidemiological investigation, the results obtained by antibiotic resistance typing (ART) which was the phenotyping method, was compared to the results of the genotyping methods which were PPA and PFGE. Of the isolates 49 (81.6%) were S.sonnei, 10 (16.6%) were S.flexneri and one was (1.6%) S.dysenteriae. Antimicrobial susceptibilities were evaluated by disc diffusion method and the highest resistance rates were found against trimethoprim/sulfamethoxazole (91.6%), followed by tetracycline (68.3%) and ampicillin (26.6%). Resistance against ampicillin, chloramphenicol and amoxycillin/clavulanic acid were found higher in S.flexneri isolates than S.sonnei (p< 0.001). All isolates were found to be susceptible to ciprofloxacin, gentamicin and ceftazidime. S.sonnei demonstrated 12 and S.flexneri demonstrated 4 antibiotic resistance models. All isolates were carrying plasmids with varying sizes and varying numbers between 1 to 7. S.sonnei isolates demonstrated 27 and S.flexneri isolates demonstrated 8 plasmid profiles. S.sonnei isolates were clustered in 4 patterns and S.flexneri were clustered in 5 patterns by PFGE. This method demonstrated obvious clonal similarity among S.sonnei strains isolated in Ankara and discriminative power (DP) was calculated as 0.26. PPA and ART demonstrated higher DP among S.sonnei strains (0.97 and 0.75, respectively). In this study gain or loss of instable genetic mobile elements were thought to be responsible for higher discriminative powers of PPA and ART methods. These typing methods were found to be appropriate for the epidemiological investigation of strains collected in a short time period. PFGE was found to be convenient for the evaluation of clonal relatedness of the strains, however, in such geographical areas where the same clone was in circulation, use of ART and/or PPA together with PFGE would be useful for precise discrimination of Shigella strains.
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Affiliation(s)
- Begüm Saran
- Ankara University Faculty of Medicine, Ibn-i Sina Hospital, Department of Medical Microbiology, Ankara, Turkey.
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Gomleksiz M, Alkan C, Erdem B. Synthesis, characterization and antibacterial activity of 2-p-tolyl-1H-imidazo[4,5-f][1,10] phenanthroline and its Co(II), Ni(II) and Cu(II) complexes. B CHEM SOC ETHIOPIA 2013. [DOI: 10.4314/bcse.v27i2.6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Kucukyildirim S, Erdem B, Polat Z, Mergen H. 1020 POSTER Detection of Circulating Tumour Cells (CTCs) in Gastrointestinal Tumours Using Reverse Transcriptase-polymerase Chain Reaction (RT-PCR) Method. Eur J Cancer 2011. [DOI: 10.1016/s0959-8049(11)70663-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Us E, Erdem B, Tekeli A, Gerçeker D, Saran B, Bayramova M, Sahin F. [Investigation of Salmonella serotype Enteritidis isolates by plasmid profile analysis and pulsed field gel electrophoresis]. MIKROBIYOL BUL 2011; 45:210-227. [PMID: 21644064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
In this study a total of 122 Salmonella serotype Enteritidis stock strains selected from the culture collection of Enterobacteriaceae Laboratory of Ankara University Faculty of Medicine, Department of Medical Microbiology, were investigated by plasmid profile analysis with the method defined by Kado and Liu and pulsed field gel electrophoresis (PFGE) according to World Health Organization protocols using SpeI and XbaI macrorestriction enzymes, for better understanding of the molecular epidemiology of S. Enteritidis. The study strains were selected from a collection of previously isolated epidemic (n= 13) and sporadic (n= 109) strains (103 stool, 16 blood and one each bile, urine and cerebrospinal fluid) obtained from 10 different cities after the year 2000. PFGE patterns were analyzed with Gene Directory software (Syngene, UK) and a similarity index was determined by using Dice coefficient and the unweighted pair group method with mathematical averaging (UPGMA). Plasmid-carrying 110 (90%) strains that harbored 1-4 plasmids with sizes ranging from 2.0 to 100 kb were separated into patterns more than 14 (p1-p14). A total of 85 (69.7%) isolates harbored the 57 kb plasmid solely or in combination with other plasmids. By PFGE, 11 distinct patterns were shown with each enzyme SpeI and XbaI. S. Enteritidis strains after digestion with macrorestriction enzyme SpeI generated 11 different PFGE patterns (A to K), whereas XbaI generated also 11 different PFGE patterns (a to k). PFGE pattern A consisted of 93 strains (76.2%) after digestion with macrorestriction enzyme SpeI, while PFGE pattern a consisted 53 (43.4%) and PFGE pattern b 42 strains (34.4%) after digestion with macrorestriction enzyme XbaI. Using two macrorestriction enzymes two PFGE cluster profiles Aa (50 strains, 40.9%) and Ab (42 strains, 34.4%) were found to be predominating among 17 different PFGE clusters. Our results confirmed the clonal nature of S. Enteritidis strains in Turkey. The use of two enzymes in PFGE analysis appeared to increase the discriminatory power of PFGE, leading to greater diversity among strains. PFGE analysis performed by SpeI and XbaI enzymes combined with plasmid profiling could be established as a useful tool for detection of genetic relationship between isolates.
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Affiliation(s)
- Ebru Us
- Ankara University Faculty of Medicine, Department of Medical Microbiology, Ankara, Turkey.
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Us E, Erdem B, Tekeli A, Dolapci I, Bayramova M, Saran B, Sahin F. Molecular Investigation of <i>Salmonella</i> Choleraesuis and <i>Salmonella</i> Hadar Strains Isolated from Humans in Turkey. Jpn J Infect Dis 2009. [DOI: 10.7883/yoken.jjid.2009.362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/03/2023]
Affiliation(s)
- Ebru Us
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
| | - Birsel Erdem
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
| | - Alper Tekeli
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
| | - Istar Dolapci
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
| | - Mehseti Bayramova
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
| | - Begum Saran
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
| | - Fikret Sahin
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Turkey
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Us E, Erdem B, Tekeli A, Dolapci I, Bayramova M, Saran B, Sahin F. Molecular investigation of salmonella choleraesuis and salmonella hadar strains isolated from humans in Turkey. Jpn J Infect Dis 2009; 62:362-367. [PMID: 19762985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Eleven Salmonella Choleraesuis and seven Salmonella Hadar strains isolated from various clinical humand samples were investigated by plasmid profile analysis, enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR) and pulsed-field gel electrophoresis (PFGE) in order to obtain information at a molecular level on the epidemiology of S. Choleraesuis and S. Hadar, which are significantly present in Turkey. Plasmid profile analysis showed that 10 (90.9%) of 11 S. Choleraesuis isolates harbored one to two plasmids with sizes of 2.0, 5.0 or 6.5 kb; and 5 (71.4%) of 7 S. Hadar isolates harbored one to three plasmids ranging from 2.5 to 70 kb. ERIC-PCR was performed using ERIC-2 primers; since isolates within each serotype showed similar band models, we concluded that ERIC-PCR is not suitable for differentiating isolates within the same serotype and for grouping into clusters. In PFGE using the AvrII enzyme, S. Choleraesuis isolates formed three clusters, and S. Hadar isolates formed three clusters; using the XbaI enzyme, S. Choleraesuis isolates formed two clusters, and S. Hadar isolates formed four clusters. These results showed that plasmid profile analysis and PFGE are reliable and discriminative methods that would complement antibiograms, and could contribute to the investigation of outbreak epidemiology. This is the first report on S. Choleraesuis and S. Hadar isolates from Turkey investigated by plasmid profile analysis, ERIC-PCR and PFGE methods.
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Affiliation(s)
- Ebru Us
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey.
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Sahin F, Karasartova D, Gerçeker D, Aysev AD, Erdem B. [A novel Salmonella Typhimurium plasmid, pAnkS: an example for plasmid evolution in antibiotic resistance]. MIKROBIYOL BUL 2008; 42:383-388. [PMID: 18822880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
In this study, a plasmid, carrying ampicillin resistance (ampR) gene, isolated from a clinical isolate of Salmonella enterica serotype Typhimurium presenting ACSSuT (ampicilin, chloramphenicol, streptomycin, sulphonamide, tetracycline) resistance phenotype, was defined. The length of complete sequence of this plasmid was 8271 base pairs (bp), and it was named as pAnkS owing to its isolation place (plasmid-Ankara- Salmonella). The plasmid was analyzed for potential reading frames and structural features indicative of transposons and transposon relics. The Xmnl enzyme restriction fragments of pAnkS were cloned into E. coli plasmid vectors (pBSK), sequenced and analyzed with the BLAST programs. Plasmid pAnkS has contained a previously defined enterohemorrhagic E. coli (EHEC) plasmid p4821 as a core region and also contained a complete Tn3-like transposon of 4950 bp consisting of the left terminal repeat, Tn3-related tnpR and tnpA genes for transposition functions, ampicillin resistance gene bla(TEM), and the right terminal repeats, pAnkS showed strong homology with another Salmonella plasmid, pNTP16, for sequences that belong to p4821 and partial Tn3 segments. It was found that pNTP16 also carries kanamycin resistance gene (kanR) in addition to ampR gene. Plasmid pAnkS is one of the few completely sequenced plasmids from Salmonella Typhimurium and is in the middle of the pathway of evolution of plasmid from p4821 to pNTP16. The identification of pAnkS might help better understanding of plasmid evolution.
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Affiliation(s)
- Fikret Sahin
- Ankara Universitesi Tip Fakültesi, Mikrobiyoloji ve Klinik Mikrobiyoloji Anabilim Dali, Ankara.
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Tekeli A, Erdem B, Sahin F, Koyuncu E, Karasartova D, Bayramova M. Plasmid profiles and randomly amplified polymorphic DNA analysis of Salmonella enterica serotype Enteritidis strains from outbreaks and sporadic cases in Turkey. New Microbiol 2006; 29:251-60. [PMID: 17201091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
The aim of the study was to investigate the characteristics of Salmonella serotype Enteritidis strains isolated from outbreaks and sporadic cases in Turkey by plasmid profiles and randomly amplified polymorphic DNA (RAPD) patterns. A total of 64 S. Enteritidis clinical strains were selected from the culture collection of the Enterobacteria Laboratory of Ankara University Medical School Department of Microbiology and Clinical Microbiology for molecular analysis using the plasmid profiles and RAPD method. Fifty-six isolates (88%) harbored one to four plasmids ranging in size from 2.5 to 100 kbp. 57 kbp plasmids were the most common plasmids, and forty-four strains (69%) carried 57 kbp plasmids alone or together with other plasmids. The outbreak strains carried the same plasmid profile: three plasmids sized 57, 40, 3.0 kbp. None of the strains analyzed displayed any RAPD bands with the primer OPB-17. By using primer p-1254, 42 strains (66%) were divided into fourteen RAPD patterns. Ten of the outbreak strains (77%) showed >80% similarity by cluster analysis program. Analysis of RAPD-PCR with primer p-1254 proved an easy, rapid and discriminative method complementing antibiogram and plasmid profiles in routine laboratories, and may contribute to the investigations of S. Enteritidis which still cause outbreaks in Turkey. This study presents the first report on S. Enteritidis isolates in Turkey investigated by plasmid profiles and RAPD methods.
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Affiliation(s)
- Alper Tekeli
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey
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Ercis S, Erdem B, Hasçelik G, Gür D. Nalidixic acid resistance in Salmonella strains with decreased susceptibility to ciprofloxacin isolated from humans in Turkey. Jpn J Infect Dis 2006; 59:117-9. [PMID: 16632912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The aim of this study was to evaluate the value of nalidixic acid resistance as an indicator of decreased susceptibility to ciprofloxacin (MIC = 0.125 - 1 mg/L) in Salmonella isolates from humans (n = 620) in Turkey. One isolate was found to be resistant, and the remaining isolates were susceptible to ciprofloxacin with the Clinical and Laboratory Standards Institute breakpoints; however, 75 isolates (12.1%) had decreased susceptibility. Resistance to nalidixic acid was observed in 76 (12.3%) isolates in the disk diffusion test. Seventy-four of these isolates had decreased susceptibility, one was fully resistant, and one isolate was susceptible to ciprofloxacin. One isolate with decreased susceptibility to ciprofloxacin was intermediate to nalidixic acid. Screening with 30-microg nalidixic acid disks had a sensitivity of 98.6% and a specificity of 99.8% for determination of decreased susceptibility to ciprofloxacin.
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Affiliation(s)
- Serpil Ercis
- Department of Microbiology and Clinical Microbiology, Hacettepe University Faculty of Medicine, Ankara, Turkey.
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Erdem B, Ercis S, Hascelik G, Gur D, Aysev AD. Antimicrobial resistance of Salmonella enterica group C strains isolated from humans in Turkey, 2000–2002. Int J Antimicrob Agents 2005; 26:33-7. [PMID: 15953709 DOI: 10.1016/j.ijantimicag.2005.03.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2004] [Accepted: 03/10/2005] [Indexed: 11/20/2022]
Abstract
Fifty-three Salmonella enterica group C isolates obtained from various human samples (47 stool, 4 blood and 2 urine) in ten provinces of Turkey between 1 July 2000 and 30 June 2002 were serotyped and resistance to antimicrobials was investigated by agar dilution tests. The isolates were identified as S. Choleraesuis (11), S. Hadar (7), S. Irumu (4), S. Virchow (3), S. Tallahassee (3), S. Paratyphi C (2), S. Braenderup (2), S. Othmarschen (2), S. Menston (2), S. Concord (2), S. Infantis (2), S. Kottbus (2), S. Edinburg (1), S. Oranienburg (1), S. Muenchen (1) and S. Malmoe (1). Antimicrobial resistance rates of S. enterica groups C1 and C2 were high for ampicillin (26% and 60%, respectively), amoxicillin/clavulanic acid (11% and 40%), chloramphenicol (16% and 27%) and tetracycline (3% and 40%). The percentages of strains sensitive to all antimicrobials were 58% and 33%, respectively. Multiresistance was not observed in group C1 isolates, but the rate of multiresistant isolates was 13% in group C2. The rate of decreased ciprofloxacin susceptibility (CipL) was 61% in serogroup C1 and 20% in serogroup C2. These results indicated that S. enterica group C infections in humans were not infrequent in Turkey and that multiple antimicrobial resistance was common within these strains.
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Affiliation(s)
- B Erdem
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Bilkent 3 Konutlari, F3 Blok, No. 42, Bilkent, 06800 Ankara, Turkey.
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Erdem B, Ercis S, Hascelik G, Gur D, Gedikoglu S, Aysev AD, Sumerkan B, Tatman-Otkun M, Tuncer I. Antimicrobial resistance patterns and serotype distribution among Salmonella enterica strains in Turkey, 2000?2002. Eur J Clin Microbiol Infect Dis 2005; 24:220-5. [PMID: 15772822 DOI: 10.1007/s10096-005-1293-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Since Turkey currently lacks a national reference center for Salmonella infections, the present study was conducted to document the distribution of serotypes and antimicrobial resistance patterns among Salmonella enterica isolates recovered from clinical samples in ten Turkish provinces over a 2-year period. Among the 620 Salmonella enterica isolates recovered between 1 July 2000 and 30 June 2002, strains belonging to the serotypes Enteritidis (47.7%), Typhimurium (34.7%), Paratyphi B (6.0%), Typhi (2.9%), Paratyphi A (0.2%) and serogroup C (8.5%) were found. Resistance to multiple antimicrobial agents was particularly high among Salmonella Typhimurium isolates (76.7%), and resistance or decreased susceptibility to ciprofloxacin (MIC> or =0.125 mg/l) was demonstrated in Salmonella Paratyphi B, Salmonella Typhimurium and Salmonella Enteritidis strains. All of the Salmonella Typhi isolates were susceptible to ciprofloxacin. The results indicate that decreased susceptibility to ciprofloxacin is an emerging problem in Salmonella enterica in Turkey, particularly in multiresistant strains.
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Affiliation(s)
- B Erdem
- Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey.
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Abstract
A case of Salmonella typhimurium pericarditis is reported. The diagnosis was based on blood and pericardial effusion cultures.
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Affiliation(s)
- Fusun Can
- Department of Microbiology and Clinical Microbiology, Başkent University School of Medicine, Ankara, Turkey 2Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey 3Duzen Laboratories, Ankara, Turkey
| | - Muge Demirbilek
- Department of Microbiology and Clinical Microbiology, Başkent University School of Medicine, Ankara, Turkey 2Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey 3Duzen Laboratories, Ankara, Turkey
| | - Birsel Erdem
- Department of Microbiology and Clinical Microbiology, Başkent University School of Medicine, Ankara, Turkey 2Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey 3Duzen Laboratories, Ankara, Turkey
| | - Ugur Ciftci
- Department of Microbiology and Clinical Microbiology, Başkent University School of Medicine, Ankara, Turkey 2Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey 3Duzen Laboratories, Ankara, Turkey
| | - Mine Tunaoglu
- Department of Microbiology and Clinical Microbiology, Başkent University School of Medicine, Ankara, Turkey 2Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey 3Duzen Laboratories, Ankara, Turkey
| | - Yahya Laleli
- Department of Microbiology and Clinical Microbiology, Başkent University School of Medicine, Ankara, Turkey 2Department of Microbiology and Clinical Microbiology, Ankara University School of Medicine, Ankara, Turkey 3Duzen Laboratories, Ankara, Turkey
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Erdem B, Seiler H. Über das Verhalten von komplexen Ionen bei der Papierchromatographie IV. Retentionschromatogramme durch Bildung schwerlöslicher Salze. Helv Chim Acta 2004. [DOI: 10.1002/hlca.19560390509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Erdem B, Hasçelik G, Gedikocğlu S, Gür D, Ercis S, Sümerkan B, Aysev AD, Tuncer I, Tuğrul M, Tatman Otkun M, Tünger A, Akgün Y, Acar N, Köksal I, Gültekin M, Söyletir G, Elhan A. [Salmonella enterica serotypes and Salmonella infections: a multicenter study covering ten provinces in Turkey]. MIKROBIYOL BUL 2004; 38:173-86. [PMID: 15490836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2023]
Abstract
In order to find the distinctive features of Salmonellae and Salmonella infections in Turkey, 620 Salmonellae strains, isolated from various clinical samples (481 stool, 108 blood, 12 urine, 3 bone marrow, 3 cerebrospinal fluid, 9 pus, and one from each of the bile, pleural fluid, wound, catheter samples) in 13 clinical microbiology laboratories of 10 provinces in Turkey (Ankara, Antalya, Bursa, Edirne, Eskişehir, Istanbul, Izmir, Kayseri, Konya and Trabzon) between July 1, 2000 and June 30, 2002, were serotyped. Among the patients 43% were female, 57% were male, 63.2% were from outpatient clinics and 36.8% were hospitalized patients. Seventy eight percent of the patients had gastroenteritis, 10.7% had septicemia/local infection, 9.8% had typhoid/paratyphoid fever and 1.5% were carriers. Incidence of gastroenteritis was higher in 0-5 years age group (p<0.001). Of the 620 Salmonella enterica isolates, 47.7% were S. Enteritidis, 34.7% S. Typhimurium, 6% S. Paratyphi B, 2.9% S. Typhi, 0.2% S. paratyphi A, 6.1% serogroup C1, and 2.4% serogroup C2. S. Enteritidis was the most common serotype in all provinces except for Kayseri, where S. Typhimurium was found to be the most common serotype (68.2%). Overall, the most frequently isolated serotype was S. Enteritidis, also being the most common serotype in stool and blood cultures. During the surveillance period two outbreaks have occurred, the first one by S. Enteritidis strains in Edirne, and the second one by S. Typhimurium strains in Kayseri. As a result, Salmonella infections are still a common health problem in Turkey, and active surveillance of Salmonella infections has vital importance.
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Affiliation(s)
- Birsel Erdem
- Ankara Univ. Tip Fakültesi, Mikrob. ve Klinik Mikrob. Anabilim Dali, Ankara
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Albayrak F, Cokca F, Erdem B, Aysev AD. Predictive value of nalidixic acid resistance for detecting salmonellae with decreased ciprofloxacin susceptibility. Int J Antimicrob Agents 2004; 23:332-6. [PMID: 15081080 DOI: 10.1016/j.ijantimicag.2003.09.014] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2003] [Accepted: 09/02/2003] [Indexed: 11/23/2022]
Abstract
Seventy-three Salmonella isolates classified as ciprofloxacin susceptible when using the criteria of the National Committee for Clinical Laboratory Standards were studied for nalidixic acid (NA) resistance. The aim of the study was to determine the predictive value of nalidixic acid resistance in screening for decreased ciprofloxacin susceptibility. We observed that isolates with decreased ciprofloxacin susceptibility were all resistant to nalidixic acid. Identification of nalidixic acid resistance by the disk diffusion method provided 100% sensitivity and a specificity of 98.4% in strains with minimum inhibitory concentrations (MICs) >0.008 mg/l.
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Affiliation(s)
- F Albayrak
- Ankara University Medical Faculty Clinical Bacteriology and Infectious Diseases Department, Ilkadim Mahallesi Seçkin Sokak No. 18/4, 06450 Dikmen, Ankara, Turkey.
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Ciftçi E, Güriz H, Derya Aysev A, Ince E, Erdem B, Doğru U. Salmonella bacteraemia in Turkish children: 37 cases seen in a university hospital between 1993 and 2002. ACTA ACUST UNITED AC 2004; 24:75-80. [PMID: 15005970 DOI: 10.1179/027249304225013295] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Abstract
The aim of the study was to evaluate the clinical pattern of Salmonella bacteraemia in Turkish children. From 1993 to 2002, all children with a blood culture positive for Salmonella were retrospectively evaluated in the Division of Paediatric Infectious Diseases in Ankara University School of Medicine. All Salmonella isolates were serotyped and investigated for antimicrobial susceptibility. During the 10-year study period, 40 patients with Salmonella bacteraemia were identified. Of 37 eligible children, eight had enteric fever and 29 had non-typhoidal salmonellosis. Salmonella typhimurium was the most common serotype in the group with non-typhoidal salmonellosis. No significant differences were found between the enteric fever and non-typhoidal salmonellosis groups with regard to clinical features, laboratory findings and outcome, except in mean platelet counts and mean serum alanine aminotransferase (ALT) levels. In vitro resistance rates of Salmonella strains were low. Outcome was excellent in all but one child with hydrocephalus and gross neurological sequelae owing to meningitis. Salmonella bacteraemia is relatively uncommon in Turkish children. Differentiating between enteric fever and non-typhoidal Salmonella bacteraemia on clinical grounds is difficult.
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Affiliation(s)
- Ergin Ciftçi
- Division of Paediatric Infectious Disease, School of Medicine, Ankara University, Ankara, Turkey.
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Gezer A, Esen F, Erdem B, Mutlu H, Kahraman N, Ocak V. Early first trimester ultrasound examination. Is it really efficient in the clinical management of the pregnancy? Arch Gynecol Obstet 2002; 267:76-80. [PMID: 12439551 DOI: 10.1007/s00404-001-0277-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
OBJECTIVE This is a retrospective study accomplished to determine the efficiency of the first trimester ultrasound examination especially when performed on elective conditions. MATERIALS AND METHOD The records of patients who had undergone early first trimester transvaginal ultrasound in Obstetrics and Gynecology Department of Cerrahpasa School of Medicine, Istanbul University between from January 1999 to December 2000 were reviewed. The records of 426 patients were eligible for the analysis. The age, parity, gestational week that the ultrasound performed, the complaint on appliance, the features visible on the ultrasound were noted. The patients were divided into two groups: patients without any complaint (Group 1) and patients applied with any complaint (Group 2). The prognosis of the pregnancy was determined through the follow-up. On the statistical analysis, chi-square test, student-t test, Pearson correlation analysis and multiple linear regression analysis were utilized. RESULTS In group 1, 79% of examinations were normal whereas the rate of normal ultrasound was 50% in group 2. The difference between the groups was statistically significant (p=0.000). On group 1, 7 subsequent abortions, 7 missed abortions and one case of mole hydatiform were identified (7.6%). When the patient applied with a complaint, ultrasound examination revealed abnormal findings that enabled to reach an accurate diagnosis in 29.9% of these patients. 50 abortions (inevitable or incomplete), 13 missed abortions, 3 ectopic pregnancies and 2 mole hydatiform were diagnosed. The difference between the two groups according to ability to reach a diagnosis on the initial ultrasound was statistically significant (p=0.000). CONCLUSION The value of ultrasound examination before the 10th weeks of pregnancy is not validated when the patient has no complaint even if it appears as the most powerful mean to assess the accurate gestational age and observing fetal cardiac activity is the best prognostic variable for the outcome of the fetus.
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Affiliation(s)
- A Gezer
- Obstetrics and Gynecology Department, Cerrahpasa School of Medicine, Istanbul University, Sair Nefi Sokak, No:9/4, Moda/Kadiköy, Istanbul, 81300 Turkey.
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Aysev AD, Guriz H, Erdem B. Drug resistance of Salmonella strains isolated from community infections in Ankara, Turkey, 1993-99. Scand J Infect Dis 2002; 33:420-2. [PMID: 11450860 DOI: 10.1080/00365540152029873] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
160 Salmonella strains were isolated from children at the paediatrics department of Ankara University. 48.1% of the isolates were Salmonella enteritidis, 41.9% Salmonella typhimurium and 10% other serotypes. For the analysis of data, the study period was divided into 2 periods: 1993-95 and 1996-99. A decline in the isolation rate of S. typhimurium (from 63.1% to 30.1%) and rapid rise in S. enteritidis (from 31.6% to 57.3) was observed during the review period. However, for S. typhimurium isolates, the 5-drug (ampicillin, chloramphenicol, streptomycin, tetracycline and sulfonamides) pattern of resistance was increased from 13.5% to 38.7% in the second period. Since S. enteritidis and 5-drug-resistant S. typhimurium have also increased in other countries, their pandemic spread in humans indicates the continuing importation and exportation of these pathogens.
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Affiliation(s)
- A D Aysev
- Department of Pediatrics, Medical Faculty of Ankara University, Turkey
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Otkun M, Erdem B, Akata F, Tatman-otkun M, Gerceker D, Yagci S, Ozkan E. Eur J Clin Microbiol Infect Dis 2001; 20:0206-0209. [DOI: 10.1007/s10096-001-8083-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Otkun M, Erdem B, Akata F, Tatman-Otkun M, Gerceker D, Yagci S, Ozkan E. Antibiotic Resistance Patterns and Plasmid Profiles of Salmonella typhimurium Isolates in Turkey. Eur J Clin Microbiol Infect Dis 2001; 20:206-9. [PMID: 11347674 DOI: 10.1007/pl00011253] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
To understand the resistance mechanisms present in 75 isolates of Salmonella typhimurium derived from clinical infections in Turkey, antimicrobial resistance patterns and associated plasmids were investigated. Among the 22 strains that produced extended-spectrum beta-lactamase (ESBL), 20 were resistant to aminoglycosides and 12 to trimethoprim-sulfamethoxazole. Strains that did not produce ESBL did not express aminoglycoside or trimethoprim-sulfamethoxazole resistance, although 27 of them were ampicillin resistant. None of the strains were resistant to imipenem or fluoroquinolones. Nineteen strains producing ESBL carried a plasmid of >100 MDa. Seven ESBL-producing strains conjugally transferred their ESBLs and trimethoprim-sulfamethoxazok resistance. No correlation was found between the resistance patterns and plasmids in non-ESBL-producing strains.
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Affiliation(s)
- M Otkun
- Department of Clinical Bacteriology and Infectious Diseases, Medical Faculty, Trakya University, Edirne, Turkey
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Erdem B, Threlfall EJ, Schofield SL, Ward LR, Rowe B. Plasmid profile typing provides a method for the differentiation of strains of Salmonella enteritidis phage type 4 isolated in Turkey. Lett Appl Microbiol 1994; 19:265-7. [PMID: 7765400 DOI: 10.1111/j.1472-765x.1994.tb00960.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Five phage types have been identified in 38 strains of Salmonella enteritidis isolated in Turkey in the 20-month period June 1992-January 1994. Strains belonging to phage type 4 predominated. Within phage type 4, plasmid profile typing has proved a useful method of strain discrimination and has confirmed the identity of a putative outbreak involving canteen workers in an industrial complex.
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Affiliation(s)
- B Erdem
- Ankara University, Medical Faculty, Department of Microbiology, Turkey
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Cicioğlu B, Erdem B, Erdem C, Ekmen H. [A case of chronic actinomycosis in a carcinomatous lesion]. MIKROBIYOL BUL 1993; 27:131-6. [PMID: 8502184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
A gram positive, catalase-positive Actinomyces viscosus strain has been isolated from cervicofascial carcinomatous lesion. Identification of this human strain of Actinomyces viscosus was carried out with biochemical tests. Tests for catalase, indole, nitrate reduction, methyl red reaction acetoin (VP) and gelatin hydrolysis were done by the procedure recommended by the technique described by Grencser and Slack. Carbohydrate fermentation tests were done with three basal media: Actinomyces fermentation broth, a thioglycolate fermentation base and a brain-heart infusion broth.
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Affiliation(s)
- B Cicioğlu
- Ankara Universitesi Tip Fakültesi Mikrobiyoloji Anabilim Dali
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Aksoycan N, Erdem B, Sağanak I. The antigenic relationship between Salmonella cholerae suis (211) and Salmonella aberdeen, Escherichia coli (0 75, 0 163) O antigens. Brief report. APMIS 1990; 98:858-60. [PMID: 1699559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- N Aksoycan
- Department of Microbiology, Faculty of Medicine, University of Ankara, Turkey
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Aksoycan N, Erdem B, Sağanak I. The antigenic relationship between Candida (Torulopsis) glabrata and Escherichia coli (0:75, 0:163), Salmonella aberdeen O antigens. APMIS 1988; 96:1143-4. [PMID: 2463848 DOI: 10.1111/j.1699-0463.1988.tb00993.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- N Aksoycan
- Department of Microbiology, Faculty of Medicine, University of Ankara, Turkey
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Willke A, Altay G, Erdem B. [The susceptibility of Salmonella sp. to various antibiotics]. MIKROBIYOL BUL 1988; 22:17-24. [PMID: 3273593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
In this study, the in-vitro activity of ampicillin, chloramphenicol, trimethoprim-sulfamethoxazole (TMP-SMX), cefoperazone, ceftriaxone, cefotaxime, ceftizoxime, ofloxacin, pefloxacin, ciprofloxacin, and fleroxacin against recently isolated strains of S.typhi (20) and Salmonella group B (42) have been investigated. The minimum inhibitory concentrations (MICs) were determined using the microtube dilution technique except for TMP-SMX which was tested by agar dilution technique. All of S.typhi strains have been found to be susceptible to all antibiotics used in this study. In Salmonella group B bacteria relatively high percentage of resistance has been found against ampicillin (28.6%), chloramphenicol (33%), TMP-SMX (42.9%), cefoperazone (35.7%), and ceftizoxime (12%). All new quinolone derivatives tested were very active against all of the Salmonella strains. The antibiotic therapy proposals on salmonellosis in adults have been discussed in the light of our results, our clinical experience and the other studies.
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Affiliation(s)
- A Willke
- A.U. Tip Fak. Klin. Bakt. ve Infeksiyon Hastaliklari
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Erdem B, Prijs B. Über das Verhalten von komplexen Ionen bei der Papierchromatographie III. Retentionschromatographie mit Komplexbildner in der mobilen Phase. Helv Chim Acta 1956. [DOI: 10.1002/hlca.19560390506] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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