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Cosío BG, Pascual-Guardia S, Borras-Santos A, Peces-Barba G, Santos S, Vigil L, Soler-Cataluña JJ, Martínez-González C, Casanova C, Marcos PJ, Alvarez CJ, López-Campos JL, Gea J, Garcia-Aymerich J, Molina J, Román M, Moises J, Szabo V, Reagan EA, San José Estépar R, Washko G, Agustí A, Faner R. Phenotypic characterisation of early COPD: a prospective case-control study. ERJ Open Res 2020; 6:00047-2020. [PMID: 33043045 PMCID: PMC7533304 DOI: 10.1183/23120541.00047-2020] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 06/26/2020] [Indexed: 11/18/2022] Open
Abstract
The phenotypic characteristics of chronic obstructive pulmonary disease (COPD) in individuals younger than 50 years of age (early COPD) are not well defined. This prospective, multicentre, case–control study sought to describe these characteristics and compare them with those of smokers (≥10 pack-years) of similar age with normal spirometry (controls). We studied 92 cases (post-bronchodilator forced expiratory volume in 1 s (FEV1)/forced vital capacity (FVC) <0.7) and 197 controls. Results were contrasted with participants with similar inclusion criteria recruited into the ECLIPSE and COPDGene cohorts. Cases had moderate airflow limitation (FEV1 71.3±20.8%) but were often symptomatic, used healthcare resources frequently, had air trapping (residual volume 150.6±55.5% ref.), had reduced diffusing capacity (84.2±20.7% ref.) and had frequent evidence of computed tomography (CT) emphysema (61%). Of note, less than half of cases (46%) had been previously diagnosed with COPD. Interestingly, they also often reported a family history of respiratory diseases and had been hospitalised because of respiratory problems before the age of 5 years more frequently than controls (12% versus 3%, p=0.009). By and large, these observations were reproduced when available in the ECLIPSE and COPDGene cohorts. These results show that early COPD is associated with substantial health impact and significant structural and functional abnormalities, albeit it is often not diagnosed (hence, treated). The fact that a sizeable proportion of patients with early COPD report a family history of respiratory diseases and/or early-life events (including hospitalisations before the age of 5 years) renders further support to the possibility of early-life origin of COPD. Early COPD is associated with substantial health impact, and structural and functional abnormalities, albeit it is often not diagnosed and hence, not treated. It is frequently associated with family history of respiratory diseases and early-life events.https://bit.ly/2ZtoRkp
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Affiliation(s)
- Borja G Cosío
- Servicio de Neumología, Hospital Universitario Son Espases-IdISBa, Palma de Mallorca, Spain.,CIBER de Enfermedades Respiratorias, Madrid, Spain
| | - Sergi Pascual-Guardia
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Servei de Pneumologia, Hospital del Mar - IMIM, Barcelona, Spain.,Universitat Pompeu Fabra, Barcelona, Spain
| | | | - Germán Peces-Barba
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Fundación Jiménez Díaz, Hospital Universitario, Grupo Quirón, Madrid, Spain
| | - Salud Santos
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Servicio de Neumología, Hospital Universitario de Bellvitge, Barcelona, Spain.,IDIBELL, Universidad de Barcelona, Hospitalet de Llobregat, Barcelona, Spain
| | - Laura Vigil
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Servei de Pneumologia, Hospital Universitari Parc Taulí, Sabadell, Spain
| | - Juan José Soler-Cataluña
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Servicio de Neumología, Hospital Arnau de Vilanova-LLiria, Valencia, Spain
| | | | - Ciro Casanova
- Servicio de Neumología-Unidad de Investigación Hospital Universitario La Candelaria, Universidad de La Laguna, Tenerife, Spain
| | - Pedro J Marcos
- Dirección de Procesos Asistenciales, Servicio de Neumología, Instituto de Investigación Biomédica de A Coruña (INIBIC), Complejo Hospitalario Universitario de A Coruña, Area Sanitaria de A Coruña, Sergas, Universidade da Coruña, A Coruña, Spain
| | - Carlos J Alvarez
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Servicio Neumología, HU 12 de Octubre, Madrid, Spain.,Departamento de Medicina, Facultad Medicina UCM, Madrid, Spain
| | - José Luis López-Campos
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Unidad Médico-Quirúrgica de Enfermedades Respiratorias, Instituto de Biomedicina de Sevilla, Hospital Universitario Virgen del Rocío/Universidad de Sevilla, Seville, Spain
| | - Joaquim Gea
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Servei de Pneumologia, Hospital del Mar - IMIM, Barcelona, Spain.,Universitat Pompeu Fabra, Barcelona, Spain
| | - Judith Garcia-Aymerich
- Universitat Pompeu Fabra, Barcelona, Spain.,ISGlobal, Barcelona, Spain.,CIBER de Epidemiología y Salud Pública, Madrid, Spain
| | - Jesús Molina
- Centro de Salud Francia, DAO, Madrid, Grupo de Respiratorio semFYC, Madrid, Spain
| | - Miguel Román
- Centro de Salud de Son Pisa, Unidad de investigación en enfermedades respiratorias crónicas en atención primaria, IdISBa, Palma de Mallorca, Spain
| | - Jorge Moises
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Institut Respiratori, Hospital Clinic, Barcelona, Spain.,Universitat de Barcelona, Barcelona, Spain.,Institut d'Investigacio August Pi i Sunyer, Barcelona, Spain
| | - Viktoria Szabo
- Institut d'Investigacio August Pi i Sunyer, Barcelona, Spain
| | | | - Raúl San José Estépar
- Applied Chest Imaging Laboratory, Dept of Radiology, Brigham and Women's Hospital, Boston, MA, USA
| | - George Washko
- Division of Pulmonary and Critical Care, Brigham and Women's Hospital, Boston, MA, USA
| | - Alvar Agustí
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Institut Respiratori, Hospital Clinic, Barcelona, Spain.,Universitat de Barcelona, Barcelona, Spain.,Institut d'Investigacio August Pi i Sunyer, Barcelona, Spain
| | - Rosa Faner
- CIBER de Enfermedades Respiratorias, Madrid, Spain.,Institut d'Investigacio August Pi i Sunyer, Barcelona, Spain
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Alvarez CJ, Dau MT, Marty A, Vergnaud C, Le Poche H, Pochet P, Jamet M, Okuno H. Impact of a van der Waals interface on intrinsic and extrinsic defects in an MoSe 2 monolayer. Nanotechnology 2018; 29:425706. [PMID: 30052205 DOI: 10.1088/1361-6528/aad66f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
In this work, we study growth and migration of atomic defects in MoSe2 on graphene using multiple advanced transmission electron microscopy techniques to explore defect behavior in vdW heterostructures. A MoSe2/graphene vdW heterostructure is prepared by a direct growth of both monolayers, thereby attaining an ideal vdW interface between the monolayers. We investigate the intrinsic defects (inversion domains and grain boundaries) in synthesized MoSe2, their evolution amid growth processing steps, and their influence on the formation and movement of extrinsic defects. Electron diffraction identifies a preferential interlayer orientation of 2° between MoSe2 and graphene, which is caused by the presence of intrinsic IBD defects. Extrinsic defects (point and line defects) are generated by in situ electron irradiation in the MoSe2 layer. Our results shed light on how to independently modify the MoSe2 atomic structure in vdW heterostructures for potential utilization in device processing.
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Pozo-Rodríguez F, Castro-Acosta A, Alvarez CJ, López-Campos JL, Forte A, López-Quilez A, Agustí A, Abraira V. Determinants of between-hospital variations in outcomes for patients admitted with COPD exacerbations: findings from a nationwide clinical audit (AUDIPOC) in Spain. Int J Clin Pract 2015; 69:938-47. [PMID: 25651319 PMCID: PMC5024082 DOI: 10.1111/ijcp.12601] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
BACKGROUND Previous studies have demonstrated significant variability in the processes of care and outcomes of chronic obstructive pulmonary disease (COPD) exacerbations. The AUDIPOC is a Spanish nationwide clinical audit that identified large between-hospital variations in care and clinical outcomes. Here, we test the hypothesis that these variations can be attributed to either patient characteristics, hospital characteristics and/or the so-called hospital-clustering effect, which indicates that patients with similar characteristics may experience different processes of care and outcomes depending on the hospital to which they are admitted. METHODS A clinical audit of 5178 COPD patients consecutively admitted to 129 Spanish public hospitals was performed, with a 90-day follow-up. Multilevel regression analysis was conducted to model the probability of patients experiencing adverse outcomes. For each outcome, an empty model (with no independent variables) was fitted to assess the clustering effect, followed by a model adjusted for the patient- and hospital-level covariables. The hospital-clustering effect was estimated using the intracluster correlation coefficient (ICC); the cluster heterogeneity was estimated with the median odds ratio (MOR), and the coefficients of predictors were estimated with the odds ratio (OR). RESULTS In the empty models, the ICC (MOR) for inpatient mortality and the follow-up mortality and readmission were 0.10 (1.80), 0.08 (1.65) and 0.01 (1.24), respectively. In the adjusted models, the variables that most represented the patients' clinical conditions and interventions were identified as outcome predictors and further reduced the hospital variations. By contrast, the resource factors were primarily unrelated with outcomes. CONCLUSIONS This study demonstrates a noteworthy reduction in the observed crude between-hospital variation in outcomes after accounting for the hospital-cluster effect and the variables representing patient's clinical conditions. This emphasises the predictor importance of the patients' clinical conditions and interventions, and understates the impacts of hospital resources and organisational factors.
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Affiliation(s)
- F Pozo-Rodríguez
- Pulmonary Service and Research Institute, Doce de Octubre University Hospital, Madrid, Spain
- CIBER Enfermedades Respiratorias (CIBERES), Madrid, Spain
| | - A Castro-Acosta
- Pulmonary Service and Research Institute, Doce de Octubre University Hospital, Madrid, Spain
- CIBER Enfermedades Respiratorias (CIBERES), Madrid, Spain
| | - C J Alvarez
- Pulmonary Service and Research Institute, Doce de Octubre University Hospital, Madrid, Spain
- CIBER Enfermedades Respiratorias (CIBERES), Madrid, Spain
| | - J L López-Campos
- CIBER Enfermedades Respiratorias (CIBERES), Madrid, Spain
- Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/Universidad de Sevilla, Sevilla, Spain
| | - A Forte
- Department of Economics, Universitat Jaume I, Castellón, Spain
| | - A López-Quilez
- Department of Statistics and Operational Research, University of Valencia, Valencia, Spain
| | - A Agustí
- Thorax Institute, Hospital Clinic, IDIBAPS, Universitat de Barcelona and CIBER Enfermedades Respiratorias, FISIB, Mallorca, Spain
| | - V Abraira
- Unidad de Bioestadística Clínica Ramón y Cajal University Hospital, IRYCIS, Madrid, Spain
- Centre for Biomedical Research on Epidemiology and Public Health (CIBERESP), Instituto de Salud Carlos III, Madrid, Spain
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Abstract
The influence of sublexical and lexico-syntactic factors during the grammatical gender assignment process in Spanish was studied in two experiments using the gender decision task. In Experiment 1, the regularity of the ending of gender-marked nouns (masculine nouns ended in -o and feminine nouns ended in -a) and of nouns with gender-correlated but unmarked word-endings (e.g., -ad) was manipulated. The results showed that regularity affected reaction times and error rates only in the case of gender-marked nouns, suggesting that the mere statistical distribution of a word-ending across genders is not responsible for the regularity effect. In Experiment 2, gender-marked nouns and gender-unmarked nouns were preceded by a masked prime which could be a definite article (which provides information about the gender of the noun) or a possessive pronoun (which does not contain gender information). The presentation of the definite article led to shorter reaction times and less errors only when the word-ending was different from -o or -a. Taken together, these results indicate that gender assignment in Spanish is carried out through different processes depending on the noun ending: gender decisions for gender-marked nouns are based on the gender-to-ending distribution. Meanwhile, gender decisions for unmarked nouns seem to require the retrieval of the corresponding definite grammatical article, regardless of the statistical distribution of the noun ending across genders.
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Affiliation(s)
- Olivia Afonso
- Departamento de Psicología Cognitiva, Social y Organizacional, Campus de Guajara, Universidad de La Laguna, 38205, Santa Cruz de Tenerife, Spain,
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Alvarez CJ, Liu Y, Leonard RL, Johnson JA, Petford-Long AK. Nanocrystallization in Fluorochlorozirconate Glass-Ceramics. J Am Ceram Soc 2013; 96:3617-3621. [PMID: 24707056 PMCID: PMC3975619 DOI: 10.1111/jace.12540] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Heat treating fluorochlorozirconate (FCZ) glasses nucleates nanocrystals in the glass matrix, resulting in a nanocomposite glass-ceramic that has optical properties suitable for use as a medical imaging plate. Understanding the way in which the nanocrystal nucleation proceeds is critical to controlling the optical behavior. The nucleation and growth of nanocrystals in FCZ glass-ceramics was investigated with in situ transmission electron microscopy heating experiments. The experiments showed the nucleation and growth of previously unreported BaF2 nanocrystals in addition to the expected BaCl2 nanocrystals. Chemical analysis of the BaF2 nanocrystals shows an association with the optically active dopant previously thought only to interact with BaCl2 nanocrystals. The association of the dopant with BaF2 crystals suggests that it plays a role in the photoluminescent (PL) properties of FCZ glass-ceramics.
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Affiliation(s)
- Carlos J. Alvarez
- Materials Science and Engineering Department, Northwestern University, Evanston, Illinois 60208
- Nanoscience and Technology Division, Argonne National Laboratory, Argonne, Illinois 60439
| | - Yuzi Liu
- Nanoscience and Technology Division, Argonne National Laboratory, Argonne, Illinois 60439
| | - Russell L. Leonard
- Mechanical, Aerospace and Biomedical Engineering Department, University of Tennessee Space Institute, Tullahoma, Tennessee 37388
| | - Jacqueline A. Johnson
- Mechanical, Aerospace and Biomedical Engineering Department, University of Tennessee Space Institute, Tullahoma, Tennessee 37388
| | - Amanda K. Petford-Long
- Materials Science and Engineering Department, Northwestern University, Evanston, Illinois 60208
- Nanoscience and Technology Division, Argonne National Laboratory, Argonne, Illinois 60439
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Luque JL, López-Zamora M, Alvarez CJ, Bordoy S. Beyond decoding deficit: inhibitory effect of positional syllable frequency in dyslexic Spanish children. Ann Dyslexia 2013; 63:239-252. [PMID: 23780714 DOI: 10.1007/s11881-013-0082-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2012] [Accepted: 05/20/2013] [Indexed: 06/02/2023]
Abstract
This study explores whether activation and inhibition word processes contribute to the characteristic speed deficits found in transparent orthographies (Wimmer, Appl Psycholinguist 14:1-33, 1993). A second and fourth grade sample of normal school readers and dyslexic school readers participated in a lexical decision task. Words were manipulated according to two factors: word frequency (high vs. low) and syllable frequency (high vs. low). It has been repeatedly found that words with high-frequency syllables require extra time for deactivating the lexical syllabic neighbors: the so-called inhibitory effect of positional frequency syllable (Carreiras et al., J Mem Lang 32:766-780, 1993). We hypothesized that dyslexic readers would show a stronger inhibitory effect than normal readers because they are slower decoders and they may also be slower at the activation and inhibition of word representations that are competing (i.e., syllabic candidates). Results indicated an interaction between word and syllable frequency (i.e., a strong inhibitory effect was found in the low-frequency word condition). According to our hypothesis, the inhibitory effect size was almost three times bigger in dyslexics than in the normal readers. This difference shows an alteration, not a developmental lag. Interestingly, the inhibitory effect size did not interact with school grade. Thus, reading experience did not impact the lexical processes involved on the inhibitory effect. Our outcomes showed how activation and/or inhibition of lexical processes can contribute to the lack of speed beyond decoding deficit.
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Alvarez CJ, Urrutia M, Domínguez A, Sánchez-Casas R. Processing inflectional and derivational morphology: electrophysiological evidence from Spanish. Neurosci Lett 2010; 490:6-10. [PMID: 21167910 DOI: 10.1016/j.neulet.2010.12.015] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Revised: 11/25/2010] [Accepted: 12/08/2010] [Indexed: 11/30/2022]
Abstract
The goal of this paper is to study possible differences between the processing of inflectional vs. derivational morphology in Spanish word recognition using electrophysiological measures. A lexical decision task to target words preceded by morphological-related (or unrelated) primes was used. The orthographic and phonological overlap and the grammatical class for the two experimental conditions were exactly the same. Examples of the related conditions were, for inflection, NIÑO-NIÑA ("girl"-"boy"), and for derivation, RAMO-RAMA ("bunch"-"branch"). These conditions were compared with unrelated pairs without orthographic, phonological or semantic relationships. An attenuation of the N-400 component was found for both related conditions from 300 ms until 450 ms (until 500 ms for inflections only). In addition, different locations were suggested by the source analysis. These findings are consistent with accounts that argue for differences between the processing of inflections and derivations.
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Urrutia M, Domínguez A, Alvarez CJ. Gender activation in transparent and opaque words. Psicothema 2009; 21:1-8. [PMID: 19178848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Two reaction time experiments were carried out to examine the morphological gender processing of Spanish words that were either transparent -that is, ending in o/a (e.g., banco - bank)-or opaque-that is, without superficial gender marking (e.g., virtud - virtue). In Experiment 1, participants categorized the gender of a transparent gender target preceded by a derived word of the same gender (e.g., banquillo-dock, masculine) or of different gender (e.g., banqueta-stool, feminine). A negative priming gender effect indicates the use of strategic-attentional mechanisms to decide the gender of the target, but also automatic computation of the prime gender. Experiment 2 used a lexical decision task with the stimuli of Experiment 1 in addition to opaque gender words. The results show longer reaction times for transparent gender words with regard to opaque items. This effect was possibly due to the lexical requirements of the task: lexical decision, and also because transparent words are morphologically more complex than opaque words. Finally, in both experiments, there was negative priming: when prime and target were of the same gender, reaction times were longer. This effect indicates that participants cannot ignore the gender of the prime when they respond to the target.
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Abstract
This research focused on the syllable as a processing unit in handwriting. Participants wrote, in uppercase letters, words that had been visually presented. The interletter intervals provide information on the timing of motor production. In Experiment 1, French participants wrote words that shared the initial letters but had different syllable boundaries. In Experiment 2, French- and Spanish-speaking participants wrote cognates and pseudowords with a letter sequence that was always intrasyllabic in French and intersyllabic in Spanish. In Experiment 3, French-Spanish bilinguals wrote the cognates and pseudowords with the same type of sequences. In the 3 experiments, the critical interletter intervals were longer between syllables than within syllables, indicating that word syllable structure constrains motor production both in French and Spanish.
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Affiliation(s)
- Sonia Kandel
- Laboratoire de Psychologie et NeuroCognition, Centre National de la Recherche Scientifique (CNRS) UMR 5105, Université Pierre Mendès France, Grenoble, France.
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Menéndez R, Torres A, Rodríguez de Castro F, Zalacaín R, Aspa J, Martín Villasclaras JJ, Borderías L, Benítez Moya JM, Ruiz-Manzano J, Blanquer J, Pérez D, Puzo C, Sánchez-Gascón F, Gallardo J, Alvarez CJ, Molinos L. Reaching Stability in Community-Acquired Pneumonia: The Effects of the Severity of Disease, Treatment, and the Characteristics of Patients. Clin Infect Dis 2004; 39:1783-90. [PMID: 15578400 DOI: 10.1086/426028] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2004] [Accepted: 08/02/2004] [Indexed: 11/03/2022] Open
Abstract
BACKGROUND The natural history of the resolution of infectious parameters in patients with community-acquired pneumonia (CAP) is not completely known. The aim of our study was to identify those factors related to host characteristics, the severity of pneumonia, and treatment that influence clinical stability. METHODS In a prospective, multicenter, observational study, we observed 1424 patients with CAP who were admitted to 15 Spanish hospitals. The main outcome variable was the number of days needed to reach clinical stability (defined as a temperature of <or=37.2 degrees C, a heart rate of <or=100 beats/min, a respiratory rate of <or=24 breaths/min, systolic blood pressure of >or=90 mm Hg, and oxygen saturation >or=90% or arterial oxygen partial pressure of >or=60 mm Hg). RESULTS The median time to stability was 4 days. A Cox proportional hazard model identified 6 independent variables recorded during the first 24 h after hospital admission related to the time needed to reach stability: dyspnea (hazard ratio [HR], 0.76), confusion (HR, 0.66), pleural effusion (HR, 0.67), multilobed CAP (HR, 0.72), high pneumonia severity index (HR, 0.73), and adherence to the Spanish guidelines for treatment of CAP (HR, 1.22). A second Cox model was performed that included complications and response to treatment. This model identified the following 10 independent variables: chronic bronchitis (HR, 0.81), dyspnea (HR, 0.79), confusion (HR, 0.61), multilobed CAP (HR, 0.84), initial severity of disease (HR, 0.73), treatment failure (HR, 0.31), cardiac complications (HR, 0.66), respiratory complications (HR, 0.77), empyema (HR, 0.57), and admission to the intensive care unit (HR, 0.57). CONCLUSIONS Some characteristics of CAP are useful at the time of hospital admission to identify patients who will need a longer hospital stay to reach clinical stability. Empirical treatment that follows guidelines is associated with earlier clinical stability. Complications and treatment failure delay clinical stability.
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Affiliation(s)
- Rosario Menéndez
- Servicio de Neumología, Hospital Universitario La Fe, Valencia, Spain.
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Abstract
Dairy farms in Galicia and elsewhere in Europe are going through a transition phase to adapt to modern dairy technology, improve labor efficiency, and increase in size and scale. Expanding a dairy herd and building housing for more cows can be very expensive. A poor decision during expansion can result in serious financial difficulties even to the point of making the farm economically unviable. Dairy managers must carefully evaluate existing alternatives and must select an optimal strategy. To aid this decision, a computer spreadsheet application has been developed that predicts the cost per cow and cost per unit of area of alternative designs as functions of the number of cows to be housed. The spreadsheet is, in principle, applicable to a wide variety of designs and to housing for livestock other than dairy cattle. However, the current database allows comparison among six of the dairy housing designs that have been used most widely in Galicia in recent years. From projected financial results of the developed model, it was concluded that differing designs were preferred for different farm circumstances. Preferred designs for farms with 60 to 200 cows were either four rows of facing free stalls or four rows of tail-to-tail free stalls, which have virtually the same costs. Whereas for farms with fewer than 60 cows, the preferred design was two rows of tail-to-tail free stalls, designs with three rows of free stalls were generally more costly per cow. Results of design calculations must be integrated with other farm management considerations in choosing a particular design.
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Affiliation(s)
- J M Pereira
- Department of Agroforestry Engineering, University of Santiago de Compostela, 27002 Lugo, Spain.
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Abstract
Three types of sublexical units were studied in Spanish visual word recognition: the syllable, the basic orthographic syllabic structure (BOSS), and the root morpheme. In Experiment 1, using a lexical-decision task, a typical inhibitory effect of the first-syllable frequency was found (while keeping constant the BOSS frequency) as well as the word-frequency effect. Experiment 2 examined the role of both the BOSS frequency and the word frequency, also in a lexical-decision task. Syllable frequency was controlled. Both the BOSS frequency and the word frequency showed facilitatory effects. However, in Experiments 3A and 3B, a facilitatory effect of the root frequency (when controlling for BOSS frequency) and a null effect of BOSS frequency (when controlling for root frequency) were found, suggesting that the BOSS effect is in fact reflecting a morpheme effect. A review of the current models shows that it is difficult to integrate syllables and morphemes in a unique model.
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Affiliation(s)
- C J Alvarez
- Department of Cognitive Psychology, University of La Laguna, Tenerife, Spain.
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Abstract
In the course of analyzing 5' splice site mutations in the second intron of Schizosaccharomyces pombe cdc2, we identified a cryptic 5' junction containing a nonconsensus nucleotide at position +2. An even more unusual feature of this cryptic 5' junction was its pattern of activation. By analyzing the profile of splicing products for an extensive series of cdc2 mutants in the presence and absence of compensatory U1 alleles, we have obtained evidence that the natural 5' splice site participates in activation of the cryptic 5' splice site, and that it does so via base pairing to U1 snRNA. Furthermore, the results of follow-up experiments strongly suggest that base pairing between U1 snRNA and the cryptic 5' junction itself plays a dominant role in its activation. Most remarkably, a mutant U1 can activate the cryptic 5' splice site even in the presence of a wild-type sequence at the natural 5' junction, providing unambiguous evidence that this snRNA redirects splicing via base pairing. Although previous work has demonstrated that U5 and U6 snRNAs can activate cryptic 5' splice sites through base pairing interactions, this is the first example in which U1 snRNA has been implicated in the final selection of a cryptic 5' junction.
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Affiliation(s)
- C J Alvarez
- Case Western Reserve University, School of Medicine, Department of Molecular Biology and Microbiology, Cleveland, Ohio 44106-4960, USA
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Abstract
Schizosaccharomyces pombe pre-mRNAs are generally multi-intronic and share certain features with pre-mRNAs from Drosophila melanogaster, in which initial splice site pairing can occur via either exon or intron definition. Here, we present three lines of evidence suggesting that, despite these similarities, fission yeast splicing is most likely restricted to intron definition. First, mutating either or both splice sites flanking an internal exon in the S. pombe cdc2 gene produced almost exclusively intron retention, in contrast to the exon skipping observed in vertebrates. Second, we were unable to induce skipping of the internal microexon in fission yeast cgs2, whereas the default splicing pathway excludes extremely small exons in mammals. Because nearly quantitative removal of the downstream intron in cgs2 could be achieved by expanding the microexon, we propose that its retention is due to steric occlusion. Third, several cryptic 5' junctions in the second intron of fission yeast cdc2 are located within the intron, in contrast to their generally exonic locations in metazoa. The effects of expanding and contracting this intron are as predicted by intron definition; in fact, even highly deviant 5' junctions can compete effectively with the standard 5' splice site if they are closer to the 3' splicing signals. Taken together, our data suggest that pairing of splice sites in S. pombe most likely occurs exclusively across introns in a manner that favors excision of the smallest segment possible.
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Affiliation(s)
- C M Romfo
- Department of Molecular Biology and Microbiology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4960, USA
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Sullivan GF, Amenta PS, Villanueva JD, Alvarez CJ, Yang JM, Hait WN. The expression of drug resistance gene products during the progression of human prostate cancer. Clin Cancer Res 1998; 4:1393-403. [PMID: 9626455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Prostate cancer progresses from a localized disease to a widely disseminated malignancy. Each step along this progression pathway involves multiple genetic alterations that impart a survival advantage to the tumor cell over its normal counterparts and may confer resistance to therapy. Because metastatic prostate cancer is one of the most therapy-resistant human neoplasms, we studied the expression of certain molecular determinants of drug resistance in the context of tumor progression. Paraffin-embedded formalin-fixed resected prostates were chosen based on Gleason grade and surgical stage. Immunohistochemistry was used to detect the expression of multidrug resistance protein (MRP), topoisomerase II alpha, p53, glutathione S-transferase pi, Bcl-2, and P-glycoprotein in these specimens. We found that all of the proteins were expressed in resected prostate except for P-glycoprotein. The expression of MRP, topoisomerase II alpha, p53, and Bcl-2 increased with the Gleason grade. In addition, the expression of MRP, topoisomerase II alpha, and p53 increased with the surgical stage. In contrast, the glutathione S-transferase pi and Bcl-2 expression decreased with the increasing surgical stage. Stage was the strongest indicator of protein expression. These results suggest that drug resistance gene products are expressed in prostate cancer at the time of surgical resection. Thus, although the emergence of the "pan-resistance" phenotype in prostate cancer may partly be a function of the selection pressure exerted by therapeutic interventions, certain determinants of chemoresistance may be caused by genetic changes accompanying tumorigenesis.
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Affiliation(s)
- G F Sullivan
- Department of Pharmacology, University of Medicine and Dentistry of New Jersey/Robert Wood Johnson Medical School, New Brunswick 08901, USA
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Abstract
The expression of prostaglandin H synthases can be induced by many stimuli and is likely to be important in control of the cell cycle. The analysis of prostaglandin H synthase-1 and -2 expression in colon adenocarcinoma cell lines is a useful model system for studying the function of the prostaglandin H synthases, especially with regard to proliferation and adhesion. Prostaglandin H synthase-1 protein is not found in any of eight human colon adenocarcinoma cell lines. Expression of prostaglandin H synthase-2 is variable for the eight cell lines: three constitutively expressed active protein, four did not express this gene at all, and one had mRNA but no active protein. Thus, five colorectal adenocarcinoma cell lines exhibit "null" expression of prostaglandin synthase-2. The three cell lines with constitutive expression of prostaglandin H synthase-2 produce PGE2. Prostaglandin E2 production could be inhibited by aspirin and NS398 without inhibiting proliferation, while direct addition of prostaglandin E2 inhibits proliferation. Adhesion to collagen IV and fibronectin was stronger in those cell lines that expressed prostaglandin H synthase-2. The constitutive expression of prostaglandin H synthase-2 is associated with increased adhesion to extracellular matrix components and a potential inhibition of proliferation through the production of prostaglandin E2. The absence of PGH synthase-2 expression in some cell lines may result from the original tumor's need to inactivate these associated functions. Our evidence suggests that PGH synthase-2 is a possible candidate for a tumor suppressor gene at 1q23-qter.
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Affiliation(s)
- J Parker
- Division of Hematology/Oncology, James H. Quillen College of Medicine, East Tennessee State University, Johnson City 37614-0622, USA
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Alvarez CJ, Romfo CM, Vanhoy RW, Porter GL, Wise JA. Mutational analysis of U1 function in Schizosaccharomyces pombe: pre-mRNAs differ in the extent and nature of their requirements for this snRNA in vivo. RNA 1996; 2:404-418. [PMID: 8665408 PMCID: PMC1369382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The U1 snRNP is known to play a critical role in spliceosome assembly, at least in part through base pairing of its RNA moiety to the substrate, but many details remain to be elucidated. To further dissect U1 snRNA function, we have analyzed 14 single point mutations in the six nucleotides complementary to the 5' splice site for their effects on growth and splicing in the fission yeast Schizosaccharomyces pombe. Three of the four alleles previously found to support growth of Saccharomyces cerevisiae are lethal in S. pombe, implying a more critical role for the 5' end of U1 in fission yeast. Furthermore, a comparison of phenotypes for individual nucleotide substitutions suggests that the two yeasts use different strategies to modulate the extent of pairing between U1 and the 5' splice site. The importance of U1 function in S. pombe is further underscored by the lethality of several single point mutants not examined previously in S. cerevisiae. In total, only three alleles complement the U1 gene disruption, and these strains are temperature-sensitive for growth. Each viable mutant was tested for impaired splicing of three different S. pombe introns. Among these, only the second intron of the cdc2 gene (cdc2-I2) showed dramatic accumulation of linear precursor. Notably, cdc2-I2 is spliced inefficiently even in cells containing wild-type U1, at least in part due to the presence of a stable hairpin encompassing its 5' splice site. Although point mutations at the 5' end of U1 have no discernible effect on splicing of pre-U6, significant accumulation of unspliced RNA is observed in a metabolic depletion experiment. Taken together, these observations indicate that the repertoire of U1 activities is used to varying extents for splicing of different pre-mRNAs in fission yeast.
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Affiliation(s)
- C J Alvarez
- Case Western Reserve University, School of Medicine, Department of Molecular Biology and Microbiology, Cleveland, Ohio 44106-4960, USA
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Parmley RT, May ME, Spicer SS, Buse MG, Alvarez CJ. Ultrastructural distribution of inorganic iron in normal and iron-loaded hepatic cells. J Transl Med 1981; 44:475-85. [PMID: 7230734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
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Parmley RT, Eguchi M, Spicer SS, Alvarez CJ, Austin RL. Ultrastructural cytochemistry and radioautography of complex carbohydrates in heterophil granulocytes from rabbit bone marrow. J Histochem Cytochem 1980; 28:1067-80. [PMID: 7419899 DOI: 10.1177/28.10.7419899] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
The subcellular route of incorporation of complex carbohydrates into rabbit heterophil primary granules and their subsequent intragranular distribution during granule maturation were studied with ultrastructural, cytochemical, and radioautographic methods. High iron diamine (HID) staining of sulfated glycoconjugates in primary granules was partially diminished after treatment with chondroitinase ABC or after removal of N-sulfate groups with nitrous acid, but was not altered by exposure to hyaluronidase, trypsin, or HCl. Subsequent thiocarbohydrazide-silver proteinate (TCH-SP) straining of thin sections increased the density of the HID reaction product. Golgi-derived spherules and very immature morular granules stained weakly with HID-TCH-SP and labeled intensely after a 10 min incubation with 35SO4. After a 60 min 35SO4 pulse and a 60 min chase, an increase in radiolabeling was observed in granules with HID stained, fused morular material, and some labeling was present in more mature rim stained granules. Fully mature granules lacked HID or HID-TCH-SP staining, but contained most of the 35SO4 labels after a 60 min pulse and 18 hr chase in vitro. Periodate-thiocarbohydrazide-silver proteinate (PA-TCH-SP) staining of unosmicated thin sections localized vicinal glycol-containing complex carbohydrates in Golgi-associated small vesicles. These vesicles lacked HID-TCH-SP staining and apparently contained neutral glycoprotein. They frequently bordered, in a rosette arrangement, the immature morular granules, but not the more mature primary granules. The PA-TCH-SP method localized complex carbohydrates in the rim of granules precursors and enclosed a spherule or morula, but failed to stain the sulfate-containing material in the morulas or spherules. PA-TCH-SP reactivity was diffusely distributed in moderately mature granules and was decreased in fully mature granules. These results indicate that heterophil primary granule contain several complex carbohydrates including O-sulfated and N-sulfated glycosaminoglycans, as well as vicinal glycol-containing glycoproteins. These complex carbohydrates are transported to immature primary granules by different Golgi-derived organelles. The complex carbohydrates are subsequently distributed differently within primary granules and become masked to staining as the granule matures.
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Cowan HB, Parmley RT, Crist WM, Alvarez CJ, Polston N. Crystalloid-containing giant granules in leukemic monoblasts. Blood 1980; 55:946-54. [PMID: 6929715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
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Parmley RT, Denys FR, Alvarez CJ. Ferrocyanide enhancement of concanavalin A-ferritin and cationized ferritin staining blood cell surface glycoconjugates. Histochem J 1979; 11:379-89. [PMID: 500395 DOI: 10.1007/bf01002766] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Ferrocyanide was used to enhance cationized ferritin and concanavalin A-ferritin (Con A-ferritin) staining of surface glycoconjugates of peripheral blood and bone marrow cells from rabbits and humans. The glutaraldehyde-fixed cells were stained with Con A-ferritin or cationized ferritin and then exposed to a ferrocyanide solution. The resulting cuboidal and irregular stain deposits averaged 50 nm in diameter when viewed with the transmission (TEM) and scanning electron microscope (SEM). Rabbit blood cells demonstrated more Con A binding sites than human blood cells and the decrease in binding sites observed with maturation of human granulocytic and erythrocytic cells was not evident in rabbit cells. Differences in binding of cationized ferritin to rabbit and human cell surfaces were less prominent than that observed for Con A. These results extend previous studies of blood cell surface glycoconjugates and demonstrate that ferrocyanide enhancement significantly facilitates SEM evaluation of Con A-ferritin and cationized ferritin bound to cell surfaces.
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Abstract
The Prussian blue reaction was evaluated at the ultrastructural level as a cytochemical method to identify ferric and ferrous iron in rat bone marrow and splenic macrophages. Satisfactory tissue preservation and staining were achieved after fixation for 1 hr in 3% glutaraldehyde and exposure for 30 min to Perls's ferrocyanide solution before routine osmication and embedding. The acid ferrocyanide solution formed cuboidal and irregular electron-opaque deposits which localized ferric iron in the macrophage siderosomes and hyaloplasm. When thin sections were directly stained with the acid ferrocyanide, the stain deposits were much less distinct. The size and number of cytes exhibited sparse evenly distributed stain deposits. Several cells displayed abundant precipitates on the inner surface of the plasmalemma. Prussian blue precipitates were occasionally seen in mitochondria and nuclear euchromatin. Although osmium tetroxide post-fixation improved tissue preservation, it did not enhance the density of the ferri-ferrocyanide precipitate. The ferrocyanide solution yielded cuboidal deposits also in clots impregnated with ferritin, and electron diffraction analysis confirmed the symmetrical crystal structure of these stain precipitates. Smaller irregular precipitates were formed in clots impregnated with FeCl3, or Fe2 (SO4)3 solutions, despite the equally interpreted as indicating that the iron hydroxide core or protein structure of ferritin and hemosiderin contributed to the formation of the ultrastructurally evident cuboidal precipitates, but were not necessary for the formation of a colored reaction product. The acid ferrocyanide solution failed to stain clots formed in FeCI2, CuCI2 or CuCI solutions. Staining with a ferricyanide solution identified only sparse foci of ferrous iron in some siderosomes. This study demonstrates that the Prussian blue reaction can be used ultrastructurally to localize iron cations bound to some nonheme iron binding proteins.
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Abstract
Using a standardized guinea pig model system, the histologic appearance of newly formed bone from vitamin A deficient, vitamin A adequate and retinoic acid treated animals was compared. Microscopic examination of the histologic sections of bone collected from vitamin A deficient guinea pigs indicated the presence of highly cellular and loosely woven bone spicules. This model system is an osteoblastic model, since osteoclasts are essentially absent in tissue formed in 14-day implants. Thus, new bone formation in the vitamin A deficient guinea pig reveals morphologic changes which are principally mediated through the osteoblastic process.
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Depaola DP, Miller SA, Drummond JF, Lorente CA, Alvarez CJ. The rabbit: an in vitro model to study the molecular events associated with palate fusion. J Dent Res 1974; 53:500. [PMID: 4521919 DOI: 10.1177/00220345740530025901] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
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Alam SQ, Alvarez CJ, Harris RS. Effects of nutrition on the composition of tooth lipids and fatty acids in rats. II. Effects of restriction of a cariogenic diet on caries and lipid composition of molars and incisors. J Dent Res 1973; 52:229-35. [PMID: 4570374 DOI: 10.1177/00220345730520020801] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Weanling rats were maintained on a cariogenic diet for three or six weeks. Two control groups were given this diet ad libitum; the food intake of two other groups was restricted. The restricted groups gained less weight and developed less dental caries. Phospholipids and free fatty acids were the main lipid fractions in molars and incisors. Food restriction altered the amounts of these two fractions in the teeth.
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Alam SQ, Alvarez CJ, Harris RS. Effects of nutrition on the composition of tooth lipids and fatty acids in rats. 3. Effects of feeding different oils and fats on caries and on fatty acid composition of teeth. J Dent Res 1973; 52:236-41. [PMID: 4511304 DOI: 10.1177/00220345730520020901] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Caries incidence was generally lower in rats fed a cariogenic diet that contained four different oils and fats at a 9% level than in those fed a diet with a 3% level of the same oil or fat. The amount of linoleic acid in pooled samples of dentin and enamel extracted from the molars and incisors was related to the amount of linoleic acid in the diet.
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