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Chang'a JS, Bitanyi SS, Kamigwe A, Magidanga B, Guo S, Makoroma P, Francis G, Jumbe J, Jeremiah M, Nyakilinga D, Mwasha M, Msangi K, Cattoli G, Franzo G, Molini U, Dundon WG. Molecular characterization of porcine circovirus-2 and -3 in pigs in Tanzania. J Vet Med Sci 2023. [PMID: 37150615 DOI: 10.1292/jvms.23-0031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/09/2023] Open
Abstract
Like in many other African countries, pig production is increasing in Tanzania. To support farmers and stakeholders, it is important to increase our understanding of porcine pathogens present in the country. Currently, little is known about the circulation of porcine circovirus-2 (PCV-2) and porcine circovirus-3 (PCV-3). For this reason, samples from 124 pigs collected throughout the country between 2018 to 2022 were screened by PCR for the presence of PCV-2 and PCV-3. Sequencing and phylogenetic analysis of positive amplicons identified two PCV-2 genotypes (a and d). Limited genetic heterogenicity was observed among the PCV-3. This study provides important data on pathogens present in pigs in Tanzania and should be of use veterinary authorities involved in porcine disease management.
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Affiliation(s)
- Jelly S Chang'a
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Stella S Bitanyi
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Aloyce Kamigwe
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Bishop Magidanga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Shukuru Guo
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Paulina Makoroma
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Gundelinda Francis
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Jumanne Jumbe
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Mashaka Jeremiah
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Denis Nyakilinga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Mercy Mwasha
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Kimweri Msangi
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency
| | - Giovanni Cattoli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Division, Department of Nuclear Sciences and Applications, International Atomic Energy Agency
| | - Giovanni Franzo
- Depertment of Animal Medicine, Production and Health, University of Padova
| | - Umberto Molini
- School of Veterinary Medicine, Faculty of Health Sciences and Veterinary Medicine, University of Namibia, Neudamm Campus
- Central Veterinary Laboratory (CVL)
| | - William G Dundon
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Division, Department of Nuclear Sciences and Applications, International Atomic Energy Agency
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Franzo G, Settypalli TBK, Agusi ER, Meseko C, Minoungou G, Ouoba BL, Habibata ZL, Wade A, de Barros JL, Tshilenge CG, Gelaye E, Yami M, Gizaw D, Chibssa TR, Anahory IV, Mapaco LP, Achá SJ, Ijomanta J, Jambol AR, Adedeji AJ, Luka PD, Shamaki D, Diop M, Bakhoum MT, Lo MM, Chang'a JS, Magidanga B, Mayenga C, Ziba MW, Dautu G, Masembe C, Achenbach J, Molini U, Cattoli G, Lamien CE, Dundon WG. Porcine circovirus-2 in Africa: Identification of continent-specific clusters and evidence of independent viral introductions from Europe, North America and Asia. Transbound Emerg Dis 2021; 69:e1142-e1152. [PMID: 34812571 DOI: 10.1111/tbed.14400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 11/02/2021] [Accepted: 11/11/2021] [Indexed: 01/16/2023]
Abstract
Porcine circovirus-2 (PCV-2) is associated with several disease syndromes in domestic pigs that have a significant impact on global pig production and health. Currently, little is known about the status of PCV-2 in Africa. In this study, a total of 408 archived DNA samples collected from pigs in Burkina Faso, Cameroon, Cape Verde, Ethiopia, the Democratic Republic of the Congo, Mozambique, Nigeria, Senegal, Tanzania and Zambia between 2000 and 2018 were screened by PCR for the presence of PCV-2. Positive amplicons of the gene encoding the viral capsid protein (ORF2) were sequenced to determine the genotypes circulating in each country. Four of the nine currently known genotypes of PCV-2 were identified (i.e. PCV-2a, PCV-2b, PCV-2d and PCV-2 g) with more than one genotype being identified in Burkina Faso, Ethiopia, Nigeria, Mozambique, Senegal and Zambia. Additionally, a phylogeographic analysis which included 38 additional ORF2 gene sequences of PCV-2s previously identified in Mozambique, Namibia and South Africa from 2014 to 2016 and 2019 to 2020 and available in public databases, demonstrated the existence of several African-specific clusters and estimated the approximate time of introduction of PCV-2s into Africa from other continents. This is the first in-depth study of PCV-2 in Africa and it has important implications for pig production at both the small-holder and commercial farm level on the continent.
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Affiliation(s)
- Giovanni Franzo
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
| | - Tirumala B K Settypalli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | | | - Clement Meseko
- National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | | | | | | | - Abel Wade
- National Veterinary Laboratory (LANAVET), Garoua, Cameroon
| | - José Luís de Barros
- Direction Génerale de l`Agriculture, Sylviculture et Élèvage, Direction des Services Vétérinaires, Cape Verde
| | | | - Esayas Gelaye
- National Veterinary Institute (NVI), Debre Zeit, Ethiopia
| | - Martha Yami
- National Veterinary Institute (NVI), Debre Zeit, Ethiopia
| | - Daniel Gizaw
- National Animal Health Diagnostic and Investigation Center (NAHDIC), Sebeta, Ethiopia
| | | | - Iolanda Vieira Anahory
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Lourenço P Mapaco
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Sara J Achá
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | | | | | | | - Pam Dachung Luka
- National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - David Shamaki
- National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Mariame Diop
- Laboratoire National de l'Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Sénégal
| | - Mame Thierno Bakhoum
- Laboratoire National de l'Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Sénégal
| | - Modou Moustapha Lo
- Laboratoire National de l'Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Sénégal
| | - Jelly S Chang'a
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dares Salaam, Tanzania
| | - Bishop Magidanga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dares Salaam, Tanzania
| | - Charles Mayenga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dares Salaam, Tanzania
| | - Maureen Wakwamba Ziba
- Department of Veterinary Services Ministry of Fisheries and Livestock, Central Veterinary Research Institute, Lusaka, Zambia
| | - George Dautu
- Department of Veterinary Services Ministry of Fisheries and Livestock, Central Veterinary Research Institute, Lusaka, Zambia
| | - Charles Masembe
- College of Natural Sciences, Makerere University, Kampala, Uganda
| | | | - Umberto Molini
- School of Veterinary Medicine, Faculty of Health Sciences and Veterinary Medicine, University of Namibia, Windhoek, Namibia.,Central Veterinary Laboratory (CVL), Windhoek, Namibia
| | - Giovanni Cattoli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - Charles E Lamien
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - William G Dundon
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
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Chang'a JS, Mayenga C, Settypalli TBK, Achenbach JE, Mwanandota JJ, Magidanga B, Cattoli G, Jeremiah M, Kamigwe A, Guo S, Kalabi D, Mramba F, Lamien CE. Symptomatic and asymptomatic cases of African swine fever in Tanzania. Transbound Emerg Dis 2019; 66:2402-2410. [PMID: 31325213 DOI: 10.1111/tbed.13298] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 07/12/2019] [Accepted: 07/12/2019] [Indexed: 11/27/2022]
Abstract
African swine fever (ASF) is an acute, highly contagious and deadly viral haemorrhagic disease of domestic pigs caused by African swine fever virus (ASFV). In ASF endemic countries, there are an increasing number of reports on circulating ASFV strains with different levels of virulence causing a broad range of clinical symptoms in susceptible animals. Tanzania, where ASFV is endemic since 2001, recorded several outbreaks including symptomatic and asymptomatic cases between 2015 and 2017. We collected 35 clinical samples from four outbreaks for diagnostic confirmation and sequenced the partial B646L (p72), the full E183L (p54) gene, the central variable region of the B602L gene and the intergenic region between the I73R and I329L genes to characterize molecularly the new ASFV isolates and analyse their relatedness with previously reported Tanzanian and foreign isolates. We detected ASFV in 21 samples, 15 from symptomatic and six from asymptomatic pigs. Phylogenetic analyses based on the partial p72 gene and the complete p54 (E183L) genes revealed that the ASFVs in samples from symptomatic pigs belonged to genotypes II and those in samples from asymptomatic pigs belonged to genotype IX. The CVR profiles of the p72 genotype II and genotype IX isolates differed between each other and from previously published Tanzanian sequences. The sequence analysis of the intergenic region between the I73R and I329L for the 2017 genotype II isolates showed the absence of one GGAATATATA motif in those isolates. This study showed the simultaneous circulation of two different ASFV genotypes with different levels of pathogenicity in Tanzania. Since the existence of sub-clinically infected pigs may contribute to the persistence of the virus, our findings suggest continuous surveillance and characterization of ASFV isolates in disease-endemic regions.
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Affiliation(s)
- Jelly S Chang'a
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Charles Mayenga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Tirumala Bharani K Settypalli
- Animal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | | | - Julius J Mwanandota
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Bishop Magidanga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Giovanni Cattoli
- Animal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - Mashaka Jeremiah
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Aloyce Kamigwe
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Shukuru Guo
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Denis Kalabi
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Furaha Mramba
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam, Tanzania
| | - Charles E Lamien
- Animal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
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Chang'a JS, Robertson LJ, Mtambo MMA, Mdegela RH, Løken T, Reksen O. Unexpected results from large-scale cryptosporidiosis screening study in calves in Tanzania. Ann Trop Med Parasitol 2011; 105:513-9. [PMID: 22185946 PMCID: PMC4100309 DOI: 10.1179/2047773211y.0000000007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Accepted: 10/31/2011] [Indexed: 12/28/2022]
Abstract
A study was undertaken to investigate Cryptosporidium infection in crossbreed dairy calves in two districts in Tanzania. A total of 943 fecal samples from 601 dairy calves were included in the study, with calves from both smallholder dairy farms and from large-scale and medium-scale dairy farms. The modified Ziehl-Neelsen (mZN) technique was used to examine 710 samples, and 13 of these were considered to be positive for Cryptosporidium. These 13 samples considered positive by mZN, along with the remaining 233 samples, were analysed by immunofluorescent antibody test (IFAT). Of these 246 samples examined by IFAT, 15 samples, 10 of which were considered positive by mZN, were also examined by the auramine phenol technique, and 5 samples, all of which were considered positive by mZN, were analysed by PCR. The results from the IFAT, auramine phenol and PCR analyses demonstrated that none of the samples contained Cryptosporidium oocysts, indicating that, cryptosporidiosis is currently not a problem in dairy calves in these regions of Tanzania. These unexpected results are discussed with respect to other reports on cryptosporidiosis in calves that suggest that this parasite is a serious calf disease globally, and particularly in relation to studies from Tanzania. We suggest that results from studies of cattle in Tanzania, in which mZN has been used as the sole analytical method, should be treated with caution.
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Affiliation(s)
- J S Chang'a
- Livestock Research Centre, Ministry of Livestock Development, PO BOX 561, Tanga, Tanzania.
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