1
|
Franzo G, Zerbo HL, Ouoba BL, Dji-Tombo AD, Kindo MG, Sawadogo R, Chang’a J, Bitanyi S, Kamigwe A, Mayenga C, Lo MM, Ndiaye M, Ba A, Diop GL, Anahory IV, Mapaco LP, Achá SJ, Kouakou VK, Couacy-Hymann E, Gacheru SG, Lichoti JK, Kasivalu JK, Njagi ON, Settypalli TBK, Cattoli G, Lamien CE, Molini U, Dundon WG. A Phylogeographic Analysis of Porcine Parvovirus 1 in Africa. Viruses 2023; 15:207. [PMID: 36680247 PMCID: PMC9864576 DOI: 10.3390/v15010207] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 01/05/2023] [Accepted: 01/08/2023] [Indexed: 01/13/2023] Open
Abstract
Porcine parvovirus 1 (PPV1) is recognized as a major cause of reproductive failure in pigs, leading to several clinical outcomes globally known as SMEDI. Despite being known since the late 1960s its circulation is still of relevance to swine producers. Additionally, the emergence of variants such as the virulent 27a strain, for which lower protection induced by vaccines has been demonstrated, is of increasing concern. Even though constant monitoring of PPV1 using molecular epidemiological approaches is of pivotal importance, viral sequence data are scarce especially in low-income countries. To fill this gap, a collection of 71 partial VP2 sequences originating from eight African countries (Burkina Faso, Côte d'Ivoire, Kenya, Mozambique, Namibia, Nigeria, Senegal, and Tanzania) during the period 2011-2021 were analyzed within the context of global PPV1 variability. The observed pattern largely reflected what has been observed in high-income regions, i.e., 27a-like strains were more frequently detected than less virulent NADL-8-like strains. A phylogeographic analysis supported this observation, highlighting that the African scenario has been largely shaped by multiple PPV1 importation events from other continents, especially Europe and Asia. The existence of such an international movement coupled with the circulation of potential vaccine-escape variants requires the careful evaluation of the control strategies to prevent new strain introduction and persistence.
Collapse
Affiliation(s)
- Giovanni Franzo
- Department of Animal Medicine, Production and Health, University of Padova, viale dell’Università 16, 35020 Legnaro, Italy
| | | | | | | | | | - Rasablaga Sawadogo
- Laboratoire National d’Elevage (LNE), Ouagadougou 03 BP 907, Burkina Faso
| | - Jelly Chang’a
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam P.O. Box 9254, Tanzania
| | - Stella Bitanyi
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam P.O. Box 9254, Tanzania
| | - Aloyce Kamigwe
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam P.O. Box 9254, Tanzania
| | - Charles Mayenga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dar es Salaam P.O. Box 9254, Tanzania
| | - Modou Moustapha Lo
- Laboratoire National de l’Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar BP 3120, Senegal
| | - Mbengué Ndiaye
- Laboratoire National de l’Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar BP 3120, Senegal
| | - Aminata Ba
- Laboratoire National de l’Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar BP 3120, Senegal
| | - Gaye Laye Diop
- Laboratoire National de l’Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar BP 3120, Senegal
| | - Iolanda Vieira Anahory
- Central Veterinary Laboratory, Agricultural Research Institute of Mozambique, Directorate of Animal Science, Maputo 1922, Mozambique
| | - Lourenço P. Mapaco
- Central Veterinary Laboratory, Agricultural Research Institute of Mozambique, Directorate of Animal Science, Maputo 1922, Mozambique
| | - Sara J. Achá
- Central Veterinary Laboratory, Agricultural Research Institute of Mozambique, Directorate of Animal Science, Maputo 1922, Mozambique
| | | | | | - Stephen G. Gacheru
- Central Veterinary Laboratory, Directorate of Veterinary Services, Kabete P.O. Box 00100-34188, Kenya
| | - Jacqueline K. Lichoti
- Central Veterinary Laboratory, Directorate of Veterinary Services, Kabete P.O. Box 00100-34188, Kenya
| | - Justus K. Kasivalu
- Central Veterinary Laboratory, Directorate of Veterinary Services, Kabete P.O. Box 00100-34188, Kenya
| | - Obadiah N. Njagi
- Central Veterinary Laboratory, Directorate of Veterinary Services, Kabete P.O. Box 00100-34188, Kenya
| | - Tirumala B. K. Settypalli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Division, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, P.O. Box 100, 1400 Vienna, Austria
| | - Giovanni Cattoli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Division, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, P.O. Box 100, 1400 Vienna, Austria
| | - Charles E. Lamien
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Division, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, P.O. Box 100, 1400 Vienna, Austria
| | - Umberto Molini
- School of Veterinary Medicine, Faculty of Health Sciences and Veterinary Medicine, University of Namibia, Neudamm Campus, Windhoek Private Bag 13301, Namibia
- Central Veterinary Laboratory (CVL), 24 Goethe Street, Windhoek Private Bag 18137, Namibia
| | - William G. Dundon
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Division, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, P.O. Box 100, 1400 Vienna, Austria
| |
Collapse
|
2
|
Franzo G, Settypalli TBK, Agusi ER, Meseko C, Minoungou G, Ouoba BL, Habibata ZL, Wade A, de Barros JL, Tshilenge CG, Gelaye E, Yami M, Gizaw D, Chibssa TR, Anahory IV, Mapaco LP, Achá SJ, Ijomanta J, Jambol AR, Adedeji AJ, Luka PD, Shamaki D, Diop M, Bakhoum MT, Lo MM, Chang'a JS, Magidanga B, Mayenga C, Ziba MW, Dautu G, Masembe C, Achenbach J, Molini U, Cattoli G, Lamien CE, Dundon WG. Porcine circovirus-2 in Africa: Identification of continent-specific clusters and evidence of independent viral introductions from Europe, North America and Asia. Transbound Emerg Dis 2021; 69:e1142-e1152. [PMID: 34812571 DOI: 10.1111/tbed.14400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 11/02/2021] [Accepted: 11/11/2021] [Indexed: 01/16/2023]
Abstract
Porcine circovirus-2 (PCV-2) is associated with several disease syndromes in domestic pigs that have a significant impact on global pig production and health. Currently, little is known about the status of PCV-2 in Africa. In this study, a total of 408 archived DNA samples collected from pigs in Burkina Faso, Cameroon, Cape Verde, Ethiopia, the Democratic Republic of the Congo, Mozambique, Nigeria, Senegal, Tanzania and Zambia between 2000 and 2018 were screened by PCR for the presence of PCV-2. Positive amplicons of the gene encoding the viral capsid protein (ORF2) were sequenced to determine the genotypes circulating in each country. Four of the nine currently known genotypes of PCV-2 were identified (i.e. PCV-2a, PCV-2b, PCV-2d and PCV-2 g) with more than one genotype being identified in Burkina Faso, Ethiopia, Nigeria, Mozambique, Senegal and Zambia. Additionally, a phylogeographic analysis which included 38 additional ORF2 gene sequences of PCV-2s previously identified in Mozambique, Namibia and South Africa from 2014 to 2016 and 2019 to 2020 and available in public databases, demonstrated the existence of several African-specific clusters and estimated the approximate time of introduction of PCV-2s into Africa from other continents. This is the first in-depth study of PCV-2 in Africa and it has important implications for pig production at both the small-holder and commercial farm level on the continent.
Collapse
Affiliation(s)
- Giovanni Franzo
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
| | - Tirumala B K Settypalli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | | | - Clement Meseko
- National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | | | | | | | - Abel Wade
- National Veterinary Laboratory (LANAVET), Garoua, Cameroon
| | - José Luís de Barros
- Direction Génerale de l`Agriculture, Sylviculture et Élèvage, Direction des Services Vétérinaires, Cape Verde
| | | | - Esayas Gelaye
- National Veterinary Institute (NVI), Debre Zeit, Ethiopia
| | - Martha Yami
- National Veterinary Institute (NVI), Debre Zeit, Ethiopia
| | - Daniel Gizaw
- National Animal Health Diagnostic and Investigation Center (NAHDIC), Sebeta, Ethiopia
| | | | - Iolanda Vieira Anahory
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Lourenço P Mapaco
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Sara J Achá
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | | | | | | | - Pam Dachung Luka
- National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - David Shamaki
- National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Mariame Diop
- Laboratoire National de l'Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Sénégal
| | - Mame Thierno Bakhoum
- Laboratoire National de l'Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Sénégal
| | - Modou Moustapha Lo
- Laboratoire National de l'Elevage et de Recherches Vétérinaires, Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Sénégal
| | - Jelly S Chang'a
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dares Salaam, Tanzania
| | - Bishop Magidanga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dares Salaam, Tanzania
| | - Charles Mayenga
- Centre for Infectious Diseases and Biotechnology, Tanzania Veterinary Laboratory Agency, Dares Salaam, Tanzania
| | - Maureen Wakwamba Ziba
- Department of Veterinary Services Ministry of Fisheries and Livestock, Central Veterinary Research Institute, Lusaka, Zambia
| | - George Dautu
- Department of Veterinary Services Ministry of Fisheries and Livestock, Central Veterinary Research Institute, Lusaka, Zambia
| | - Charles Masembe
- College of Natural Sciences, Makerere University, Kampala, Uganda
| | | | - Umberto Molini
- School of Veterinary Medicine, Faculty of Health Sciences and Veterinary Medicine, University of Namibia, Windhoek, Namibia.,Central Veterinary Laboratory (CVL), Windhoek, Namibia
| | - Giovanni Cattoli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - Charles E Lamien
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - William G Dundon
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| |
Collapse
|
3
|
Anahory IV, Franzo G, Settypalli TBK, Mapaco LP, Achá SJ, Molini U, Cattoli G, Lamien CE, Dundon WG. Identification of porcine circovirus-3 in Mozambique. Vet Res Commun 2021; 46:593-596. [PMID: 34750750 DOI: 10.1007/s11259-021-09858-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 11/03/2021] [Indexed: 11/28/2022]
Abstract
Porcine circovirus 3 (PCV-3) has been associated with an assortment of clinical conditions in pigs and has been reported in many countries worldwide. In Africa there is no data on the presence of PCV-3. In this study, DNA samples collected from 91 pigs between 2011 and 2019 in nine of the ten provinces of Mozambique in the context of African swine fever (ASF) monitoring were further screened for the presence of PCV-3. Of these samples, 7 (7.5%) animals were positive for PCV-3. Sequence and phylogenetic analysis of the capsid protein gene (ORF2) of the PCV-3s provided evidence of epidemiological links with PCV-3s identified in North and South America, Asia, and Europe. This is the first identification of PCV-3 in Mozambique (and Africa) and the first evidence of co-infection of PCV-3 and ASF virus. It should provide a starting point for further investigations into the presence and impact of PCV-3 in Africa.
Collapse
Affiliation(s)
- Iolanda Vieira Anahory
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Giovanni Franzo
- Department of Animal Medicine, Production and Health, University of Padova, viale dell'Università 16, 35020, Legnaro, Italy
| | - Tirumala B K Settypalli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Freidenstrasse, 1, Seibersdorf 2444, PO Box 100, 1400, Vienna, Austria
| | - Lourenço P Mapaco
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Sara J Achá
- Directorate of Animal Science, Central Veterinary Laboratory, Agrarian Research Institute of Mozambique, Maputo, Mozambique
| | - Umberto Molini
- School of Veterinary Medicine, Faculty of Health Sciences and Veterinary Medicine, University of Namibia, Neudamm Campus, Private Bag 13301, Windhoek, Namibia.,Central Veterinary Laboratory (CVL), 24 Goethe Street, Private Bag 18137, Windhoek, Namibia
| | - Giovanni Cattoli
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Freidenstrasse, 1, Seibersdorf 2444, PO Box 100, 1400, Vienna, Austria
| | - Charles E Lamien
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Freidenstrasse, 1, Seibersdorf 2444, PO Box 100, 1400, Vienna, Austria
| | - William G Dundon
- Animal Production and Health Laboratory, Animal Production and Health Section, Joint FAO/IAEA Centre, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Freidenstrasse, 1, Seibersdorf 2444, PO Box 100, 1400, Vienna, Austria.
| |
Collapse
|
4
|
Mapaco LP, Lacerda Z, Monjane IVA, Sussuro A, Viljoen GJ, Cattoli G, Dundon WG, Achá SJ. Molecular characterization of avipoxviruses circulating in Mozambique, 2016-2018. Arch Virol 2018; 163:2245-2251. [DOI: 10.1007/s00705-018-3864-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 05/02/2018] [Indexed: 10/17/2022]
|
5
|
Mapaco LP, Lacerda Z, Monjane IVA, Gelaye E, Sussuro AH, Viljoen GJ, Dundon WG, Achá SJ. Identification of Clade E Avipoxvirus, Mozambique, 2016. Emerg Infect Dis 2018; 23:1602-1604. [PMID: 28820373 PMCID: PMC5572868 DOI: 10.3201/eid2309.161981] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Analysis of scab samples collected from poultry during outbreaks of fowlpox in Mozambique in 2016 revealed the presence of clade E avipoxviruses. Infected poultry were from flocks that had been vaccinated against fowlpox virus. These findings require urgent reevaluation of the vaccine formula and control strategies in this country.
Collapse
|
6
|
Achá SJ, Kühn I, Mbazima G, Colque-Navarro P, Möllby R. Changes of viability and composition of the Escherichia coli flora in faecal samples during long time storage. J Microbiol Methods 2005; 63:229-38. [PMID: 15979748 DOI: 10.1016/j.mimet.2005.04.024] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2004] [Accepted: 03/18/2005] [Indexed: 11/24/2022]
Abstract
Long-time storage of faecal samples is necessary for investigations of intestinal microfloras. The aim of the present study was to evaluate how the viability and the composition of the Escherichia coli flora are affected in faecal samples during different storage conditions. Four fresh faecal samples (two from calves and two from infants) were divided into sub-samples and stored in four different ways: with and without addition of glycerol broth at -20 degrees C and at -70 degrees C. The viability and the phenotypic diversity of the E. coli flora in the sub-samples were evaluated after repeated thawings and after storage during 1 year. The samples stored for 1 year without thawing were also kept at room temperature for 5 days and subsequently analysed. According to phenotyping (PhP analysis) of 32 isolates per sample on day 0, all four samples contained two dominating strains of E. coli each, and between one and eight less common strains. Samples that were stored at -70 degrees C in glycerol broth showed equal or even higher bacterial numbers as the original samples, even after repeated thawings, whereas samples stored at -20 degrees C showed a considerably lower survival rate, also with addition of glycerol. Sub-samples containing glycerol broth that were kept at room temperature after storage for 1 year showed a clear increase in the number of viable cells as well as in diversity. The diversities in each sub-sample showed a tendency to decrease after several thawings as well as after storage. Generally, the E. coli populations in samples stored at -20 degrees C were less similar to the population of the original sample than that in samples stored at -70 degrees C. Samples that had been mixed with glycerol broth had an E. coli flora more similar to that in the original sample than those without glycerol broth. Furthermore, the sub-samples that were kept at room temperature after storage for 1 year generally were more similar to the original samples than if they were processed directly. We conclude that for long time storage of faecal samples, storage at -70 degrees C is preferable. If samples have to be thawed repeatedly, addition of glycerol is preferable both for samples stored at -70 degrees C and for samples stored at -20 degrees C. Our data also have indicated that when E. coli isolates from faecal samples are selected for, e.g. analysis of virulence factors, it is necessary to pick several isolates per sample in order to obtain at least one isolate representing the dominating strain(s).
Collapse
Affiliation(s)
- S J Achá
- National Veterinary Research Institute INIVE, P.O. Box 1922, Maputo, Mozambique.
| | | | | | | | | |
Collapse
|
7
|
Abstract
The prevalence of diarrhoea in calves was investigated in 8 dairy farms in Mozambique at 4 occasions during 2 consecutive years. A total of 1241 calves up to 6 months of age were reared in the farms, and 63 (5%) of them had signs of diarrhoea. Two farms had an overall higher prevalence (13% and 21%) of diarrhoea. Faecal samples were collected from all diarrhoeal calves (n = 63) and from 330 healthy calves and analysed for Salmonella species, Campylobacter jejuni and enterotoxigenic Escherichia coli (ETEC). Salmonella spp. was isolated in only 2% of all calves. Campylobacter was isolated in 11% of all calves, irrespective of health condition, and was more frequent (25%) in one of the 2 diarrhoeal farms (p = 0.001). 80% of the isolates were identified as C. jejuni. No ETEC strains were detected among the 55 tested strains from diarrhoeal calves, but 22/55 (40%) strains from diarrhoeal calves and 14/88 (16%) strains from healthy calves carried the K99 adhesin (p = 0.001). 6,757 E. coli isolates were typed with a biochemical fingerprinting method (the PhenePlate™) giving the same E. coli diversity in healthy and diarrhoeal calves. Thus it was concluded: i) the overall prevalence of diarrhoea was low, but 2 farms had a higher prevalence that could be due to an outbreak situation, ii) Salmonella did not seem to be associated with diarrhoea, iii) Campylobacter jejuni was common at one of the 2 diarrhoeal farms and iv) ETEC strains were not found, but K99 antigen was more prevalent in E. coli strains from diarrhoeal calves than from healthy, as well as more prevalent in one diarrhoeal farm.
Collapse
Affiliation(s)
- S J Achá
- National Veterinary Research Institute (INIVE), Maputo, Mozambique, Australia
| | | | | | | | | | | |
Collapse
|