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Hain C, Cieslak C, Stadler R, Kalinowski J. Structural variations in low tumor fraction mycosis fungoides unraveled by nanopore sequencing. Eur J Cancer 2022. [DOI: 10.1016/s0959-8049(22)00614-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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2
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Sargsyan Y, Kalinowski J, Thoms S. Calcium in peroxisomes: An essential messenger in an essential cell organelle. Front Cell Dev Biol 2022; 10:992235. [PMID: 36111338 PMCID: PMC9468670 DOI: 10.3389/fcell.2022.992235] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 08/10/2022] [Indexed: 11/17/2022] Open
Abstract
Calcium is a central signal transduction element in biology. Peroxisomes are essential cellular organelles, yet calcium handling in peroxisomes has been contentious. Recent advances show that peroxisomes are part of calcium homeostasis in cardiac myocytes and therefore may contribute to or even shape their calcium-dependent functionality. However, the mechanisms of calcium movement between peroxisomes and other cellular sites and their mediators remain elusive. Here, we review calcium handling in peroxisomes in concert with other organelles and summarize the most recent knowledge on peroxisomal involvement in calcium dynamics with a focus on mammalian cells.
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Affiliation(s)
- Yelena Sargsyan
- Department for Biochemistry and Molecular Medicine, Medical School EWL, Bielefeld University, Bielefeld, Germany
- Department of Child and Adolescent Health, University Medical Center, Göttingen, Germany
| | - Julia Kalinowski
- Department for Biochemistry and Molecular Medicine, Medical School EWL, Bielefeld University, Bielefeld, Germany
| | - Sven Thoms
- Department for Biochemistry and Molecular Medicine, Medical School EWL, Bielefeld University, Bielefeld, Germany
- Department of Child and Adolescent Health, University Medical Center, Göttingen, Germany
- German Center for Cardiovascular Research (DZHK), Partner Site Göttingen, Göttingen, Germany
- *Correspondence: Sven Thoms,
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3
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Paradis M, Kucharowski N, Edwards Faret G, Maya Palacios SJ, Meyer C, Stümpges B, Jamitzky I, Kalinowski J, Thiele C, Bauer R, Paululat A, Sellin J, Bülow MH. The ER protein Creld regulates ER-mitochondria contact dynamics and respiratory complex 1 activity. Sci Adv 2022; 8:eabo0155. [PMID: 35867795 PMCID: PMC9307246 DOI: 10.1126/sciadv.abo0155] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 06/07/2022] [Indexed: 05/26/2023]
Abstract
Dynamic contacts are formed between endoplasmic reticulum (ER) and mitochondria that enable the exchange of calcium and phospholipids. Disturbed contacts between ER and mitochondria impair mitochondrial dynamics and are a molecular hallmark of Parkinson's disease, which is also characterized by impaired complex I activity and dopaminergic neuron degeneration. Here, we analyzed the role of cysteine-rich with EGF-like domain (Creld), a poorly characterized risk gene for Parkinson's disease, in the regulation of mitochondrial dynamics and function. We found that loss of Creld leads to mitochondrial hyperfusion and reduced ROS signaling in Drosophila melanogaster, Xenopus tropicalis, and human cells. Creld fly mutants show differences in ER-mitochondria contacts and reduced respiratory complex I activity. The resulting low-hydrogen peroxide levels are linked to disturbed neuronal activity and lead to impaired locomotion, but not neurodegeneration, in Creld mutants. We conclude that Creld regulates ER-mitochondria communication and thereby hydrogen peroxide formation, which is required for normal neuron function.
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Affiliation(s)
- Marie Paradis
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Nicole Kucharowski
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Gabriela Edwards Faret
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
- VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium
| | | | - Christian Meyer
- Department of Zoology and Developmental Biology, University of Osnabrück, Barbarastr. 11, 49076 Osnabrück, Germany
| | - Birgit Stümpges
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Isabell Jamitzky
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Julia Kalinowski
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Christoph Thiele
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Reinhard Bauer
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
| | - Achim Paululat
- Department of Zoology and Developmental Biology, University of Osnabrück, Barbarastr. 11, 49076 Osnabrück, Germany
| | - Julia Sellin
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
- Institute for Digitalization and General Medicine, University Hospital Aachen, Pauwelsstr. 30, 52074 Aachen
| | - Margret Helene Bülow
- Life and Medical Sciences (LIMES) Institute, University of Bonn, Carl-Troll-Straße 31, 53115 Bonn, Germany
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4
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Koshla OT, Rokytskyy IV, Ostash IS, Busche T, Kalinowski J, Mösker E, Süssmuth RD, Fedorenko VO, Ostash BO. Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2. CYTOL GENET+ 2019. [DOI: 10.3103/s0095452719010080] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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5
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Schmidt F, Steinhilber A, Hammer H, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Marx-Stoelting P, Lampen A, Joos T, Pötz O. Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays. Toxicol Lett 2018. [DOI: 10.1016/j.toxlet.2018.06.568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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6
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Grenz S, Baumann P, Nebel B, Rückert C, Kalinowski J, Takors R, Blombach B. Aerobe Produktion von Isoprenoiden aus Synthesegas mit Hydrogenophaga pseudoflava
DSM1084. CHEM-ING-TECH 2018. [DOI: 10.1002/cite.201855269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- S. Grenz
- Universität Stuttgart; Institute für Bioverfahrenstechnik; Allmandring 31 70569 Stuttgart Deutschland
| | - P. Baumann
- Universität Stuttgart; Institute für Bioverfahrenstechnik; Allmandring 31 70569 Stuttgart Deutschland
| | - B. Nebel
- Universität Stuttgart; Institut für Biochemie und Technische Biochemie; Allmandring 31 70569 Stuttgart Deutschland
| | - C. Rückert
- Universität Bielefeld; Center for Biotechnology; Universitätsstraße 25 33615 Bielefeld Deutschland
| | - J. Kalinowski
- Universität Bielefeld; Center for Biotechnology; Universitätsstraße 25 33615 Bielefeld Deutschland
| | - R. Takors
- Universität Stuttgart; Institute für Bioverfahrenstechnik; Allmandring 31 70569 Stuttgart Deutschland
| | - B. Blombach
- Universität Stuttgart; Institute für Bioverfahrenstechnik; Allmandring 31 70569 Stuttgart Deutschland
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7
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Williams NJ, Perlis M, Castor C, Barnes A, Chung A, Kalinowski J, Roseus J, Rogers A, Jean-Louis G. 0193 An Exploratory, Descriptive Study Of African American’s Experiences Of Insomnia Symptoms And Treatment. Sleep 2018. [DOI: 10.1093/sleep/zsy061.192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- N J Williams
- NYU Langone Health, Department of Population Health, New York, NY
| | - M Perlis
- Department of Psychiatry, University of Pennsylvania, Philadelphia, PA
| | - C Castor
- Howard University, Division of Allied Health, Washington, DC
| | - A Barnes
- Brooklyn Campus of the VA NY Harbor Healthcare System, Brooklyn, NY
| | - A Chung
- NYU Lngone Health, New York, NY
| | | | - J Roseus
- NYU Langone Health, New York, NY
| | - A Rogers
- New York University School of Medicine, New York, NY
| | - G Jean-Louis
- NYU Langone Health, Department of Population Health, New York, NY
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8
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Abramowicz H, Abusleme A, Afanaciev K, Alipour Tehrani N, Balázs C, Benhammou Y, Benoit M, Bilki B, Blaising JJ, Boland MJ, Boronat M, Borysov O, Božović-Jelisavčić I, Buckland M, Bugiel S, Burrows PN, Charles TK, Daniluk W, Dannheim D, Dasgupta R, Demarteau M, Díaz Gutierrez MA, Eigen G, Elsener K, Felzmann U, Firlej M, Firu E, Fiutowski T, Fuster J, Gabriel M, Gaede F, García I, Ghenescu V, Goldstein J, Green S, Grefe C, Hauschild M, Hawkes C, Hynds D, Idzik M, Kačarević G, Kalinowski J, Kananov S, Klempt W, Kopec M, Krawczyk M, Krupa B, Kucharczyk M, Kulis S, Laštovička T, Lesiak T, Levy A, Levy I, Linssen L, Lukić S, Maier AA, Makarenko V, Marshall JS, Martin VJ, Mei K, Milutinović-Dumbelović G, Moroń J, Moszczyński A, Moya D, Münker RM, Münnich A, Neagu AT, Nikiforou N, Nikolopoulos K, Nürnberg A, Pandurović M, Pawlik B, Perez Codina E, Peric I, Petric M, Pitters F, Poss SG, Preda T, Protopopescu D, Rassool R, Redford S, Repond J, Robson A, Roloff P, Ros E, Rosenblat O, Ruiz-Jimeno A, Sailer A, Schlatter D, Schulte D, Shumeiko N, Sicking E, Simon F, Simoniello R, Sopicki P, Stapnes S, Ström R, Strube J, Świentek KP, Szalay M, Tesař M, Thomson MA, Trenado J, Uggerhøj UI, van der Kolk N, van der Kraaij E, Vicente Barreto Pinto M, Vila I, Vogel Gonzalez M, Vos M, Vossebeld J, Watson M, Watson N, Weber MA, Weerts H, Wells JD, Weuste L, Winter A, Wojtoń T, Xia L, Xu B, Żarnecki AF, Zawiejski L, Zgura IS. Higgs physics at the CLIC electron-positron linear collider. Eur Phys J C Part Fields 2017; 77:475. [PMID: 28943795 PMCID: PMC5587080 DOI: 10.1140/epjc/s10052-017-4968-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Accepted: 06/02/2017] [Indexed: 06/07/2023]
Abstract
The Compact Linear Collider (CLIC) is an option for a future [Formula: see text] collider operating at centre-of-mass energies up to [Formula: see text], providing sensitivity to a wide range of new physics phenomena and precision physics measurements at the energy frontier. This paper is the first comprehensive presentation of the Higgs physics reach of CLIC operating at three energy stages: [Formula: see text], 1.4 and [Formula: see text]. The initial stage of operation allows the study of Higgs boson production in Higgsstrahlung ([Formula: see text]) and [Formula: see text]-fusion ([Formula: see text]), resulting in precise measurements of the production cross sections, the Higgs total decay width [Formula: see text], and model-independent determinations of the Higgs couplings. Operation at [Formula: see text] provides high-statistics samples of Higgs bosons produced through [Formula: see text]-fusion, enabling tight constraints on the Higgs boson couplings. Studies of the rarer processes [Formula: see text] and [Formula: see text] allow measurements of the top Yukawa coupling and the Higgs boson self-coupling. This paper presents detailed studies of the precision achievable with Higgs measurements at CLIC and describes the interpretation of these measurements in a global fit.
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Affiliation(s)
- H. Abramowicz
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | - A. Abusleme
- Pontificia Universidad Católica de Chile, Santiago, Chile
| | - K. Afanaciev
- National Scientific and Educational Centre of Particle and High Energy Physics, Belarusian State University, Minsk, Belarus
| | | | - C. Balázs
- Monash University, Melbourne, Australia
| | - Y. Benhammou
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | - M. Benoit
- Département de Physique Nucléaire et Corpusculaire (DPNC), Université de Genève, Geneva, Switzerland
| | - B. Bilki
- Argonne National Laboratory, Argonne, IL USA
| | - J.-J. Blaising
- Laboratoire d’Annecy-le-Vieux de Physique des Particules, Annecy-le-Vieux, France
| | | | - M. Boronat
- IFIC, CSIC-University of Valencia, Valencia, Spain
| | - O. Borysov
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | | | | | - S. Bugiel
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | | | | | - W. Daniluk
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | | | - R. Dasgupta
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | | | | | - G. Eigen
- Department of Physics and Technology, University of Bergen, Bergen, Norway
| | | | - U. Felzmann
- University of Melbourne, Melbourne, Australia
| | - M. Firlej
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | - E. Firu
- Institute of Space Science, Bucharest, Romania
| | - T. Fiutowski
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | - J. Fuster
- IFIC, CSIC-University of Valencia, Valencia, Spain
| | - M. Gabriel
- Max-Planck-Institut für Physik, Munich, Germany
| | - F. Gaede
- CERN, Geneva, Switzerland
- DESY, Hamburg, Germany
| | - I. García
- IFIC, CSIC-University of Valencia, Valencia, Spain
| | - V. Ghenescu
- Institute of Space Science, Bucharest, Romania
| | | | - S. Green
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | | | | | - C. Hawkes
- School of Physics and Astronomy, University of Birmingham, Birmingham, UK
| | | | - M. Idzik
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | - G. Kačarević
- Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia
| | - J. Kalinowski
- Faculty of Physics, University of Warsaw, Warsaw, Poland
| | - S. Kananov
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | | | - M. Kopec
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | - M. Krawczyk
- Faculty of Physics, University of Warsaw, Warsaw, Poland
| | - B. Krupa
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | - M. Kucharczyk
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | | | - T. Laštovička
- Institute of Physics of the Academy of Sciences of the Czech Republic, Prague, Czech Republic
| | - T. Lesiak
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | - A. Levy
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | - I. Levy
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | | | - S. Lukić
- Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia
| | | | - V. Makarenko
- National Scientific and Educational Centre of Particle and High Energy Physics, Belarusian State University, Minsk, Belarus
| | - J. S. Marshall
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | | | - K. Mei
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | | | - J. Moroń
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | - A. Moszczyński
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | - D. Moya
- IFCA, CSIC-University of Cantabria, Santander, Spain
| | | | | | - A. T. Neagu
- Institute of Space Science, Bucharest, Romania
| | | | - K. Nikolopoulos
- School of Physics and Astronomy, University of Birmingham, Birmingham, UK
| | | | - M. Pandurović
- Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia
| | - B. Pawlik
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | | | - I. Peric
- Karlsruher Institut für Technologie (KIT), Institut für Prozessdatenverarbeitung und Elektronik (IPE), Karlsruhe, Germany
| | | | | | | | - T. Preda
- Institute of Space Science, Bucharest, Romania
| | | | - R. Rassool
- University of Melbourne, Melbourne, Australia
| | | | - J. Repond
- Argonne National Laboratory, Argonne, IL USA
| | | | | | - E. Ros
- IFIC, CSIC-University of Valencia, Valencia, Spain
| | - O. Rosenblat
- Raymond and Beverly Sackler School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel
| | | | | | | | | | - N. Shumeiko
- National Scientific and Educational Centre of Particle and High Energy Physics, Belarusian State University, Minsk, Belarus
| | | | - F. Simon
- Max-Planck-Institut für Physik, Munich, Germany
| | | | - P. Sopicki
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | | | | | | | - K. P. Świentek
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Crakow, Poland
| | - M. Szalay
- Max-Planck-Institut für Physik, Munich, Germany
| | - M. Tesař
- Max-Planck-Institut für Physik, Munich, Germany
| | - M. A. Thomson
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | - J. Trenado
- University of Barcelona, Barcelona, Spain
| | | | | | - E. van der Kraaij
- Department of Physics and Technology, University of Bergen, Bergen, Norway
| | - M. Vicente Barreto Pinto
- Département de Physique Nucléaire et Corpusculaire (DPNC), Université de Genève, Geneva, Switzerland
| | - I. Vila
- IFCA, CSIC-University of Cantabria, Santander, Spain
| | | | - M. Vos
- IFIC, CSIC-University of Valencia, Valencia, Spain
| | | | - M. Watson
- School of Physics and Astronomy, University of Birmingham, Birmingham, UK
| | - N. Watson
- School of Physics and Astronomy, University of Birmingham, Birmingham, UK
| | | | - H. Weerts
- Argonne National Laboratory, Argonne, IL USA
| | - J. D. Wells
- Physics Department, University of Michigan, Ann Arbor, MI USA
| | - L. Weuste
- Max-Planck-Institut für Physik, Munich, Germany
| | - A. Winter
- School of Physics and Astronomy, University of Birmingham, Birmingham, UK
| | - T. Wojtoń
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | - L. Xia
- Argonne National Laboratory, Argonne, IL USA
| | - B. Xu
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | - A. F. Żarnecki
- Faculty of Physics, University of Warsaw, Warsaw, Poland
| | - L. Zawiejski
- The Henryk Niewodniczański Institute of Nuclear Physics Polish Academy of Sciences, Crakow, Poland
| | - I.-S. Zgura
- Institute of Space Science, Bucharest, Romania
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9
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Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K. Charting the Clonal Variability Landscape of Pichia pastorisvia Genome Sequencing: New Insights into Integration Events and their Effects. CHEM-ING-TECH 2016. [DOI: 10.1002/cite.201650138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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10
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Lange J, Busche T, Kalinowski J, Takors R, Blombach B. A Systems Biology-Motivated Approach to Improve Dual-Phase Production Processes with Corynebacterium glutamicum. CHEM-ING-TECH 2016. [DOI: 10.1002/cite.201650445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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11
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Moortgat-Pick G, Baer H, Battaglia M, Belanger G, Fujii K, Kalinowski J, Heinemeyer S, Kiyo Y, Olive K, Simon F, Uwer P, Wackeroth D, Zerwas PM, Arbey A, Asano M, Bagger J, Bechtle P, Bharucha A, Brau J, Brümmer F, Choi SY, Denner A, Desch K, Dittmaier S, Ellwanger U, Englert C, Freitas A, Ginzburg I, Godfrey S, Greiner N, Grojean C, Grünewald M, Heisig J, Höcker A, Kanemura S, Kawagoe K, Kogler R, Krawczyk M, Kronfeld AS, Kroseberg J, Liebler S, List J, Mahmoudi F, Mambrini Y, Matsumoto S, Mnich J, Mönig K, Mühlleitner MM, Pöschl R, Porod W, Porto S, Rolbiecki K, Schmitt M, Serpico P, Stanitzki M, Stål O, Stefaniak T, Stöckinger D, Weiglein G, Wilson GW, Zeune L, Moortgat F, Xella S, Bagger J, Brau J, Ellis J, Kawagoe K, Komamiya S, Kronfeld AS, Mnich J, Peskin M, Schlatter D, Wagner A, Yamamoto H. Physics at the [Formula: see text] linear collider. Eur Phys J C Part Fields 2015; 75:371. [PMID: 26300691 PMCID: PMC4537698 DOI: 10.1140/epjc/s10052-015-3511-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2015] [Accepted: 05/09/2015] [Indexed: 06/04/2023]
Abstract
A comprehensive review of physics at an [Formula: see text] linear collider in the energy range of [Formula: see text] GeV-3 TeV is presented in view of recent and expected LHC results, experiments from low-energy as well as astroparticle physics. The report focusses in particular on Higgs-boson, top-quark and electroweak precision physics, but also discusses several models of beyond the standard model physics such as supersymmetry, little Higgs models and extra gauge bosons. The connection to cosmology has been analysed as well.
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Affiliation(s)
- G. Moortgat-Pick
- />II. Institute of Theoretical Physics, University of Hamburg, 22761 Hamburg, Germany
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - H. Baer
- />Department of Physics and Astronomy, University of Oklahoma, Norman, OK 73019 USA
| | - M. Battaglia
- />Santa Cruz Institute for Particle Physics, University of California Santa Cruz, Santa Cruz, CA USA
| | - G. Belanger
- />Laboratoire de Physique Theorique (LAPTh), Université Savoie Mont Blanc, CNRS, B.P.110, 74941 Annecy-le-Vieux, France
| | - K. Fujii
- />High Energy Accelerator Research Organisation (KEK), Tsukuba, Japan
| | - J. Kalinowski
- />Faculty of Physics, University of Warsaw, 02093 Warsaw, Poland
| | - S. Heinemeyer
- />Instituto de Física de Cantabria (CSIC-UC), 39005 Santander, Spain
| | - Y. Kiyo
- />Department of Physics, Juntendo University, Inzai, Chiba 270-1695 Japan
| | - K. Olive
- />William I. Fine Theoretical Physics Institute, School of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455 USA
| | - F. Simon
- />Max-Planck-Institut für Physik, 80805 Munich, Germany
| | - P. Uwer
- />Humboldt-Universität zu Berlin, Institut für Physik, 12489 Berlin, Germany
| | - D. Wackeroth
- />Department of Physics, SUNY at Buffalo, Buffalo, NY 14260-1500 USA
| | - P. M. Zerwas
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - A. Arbey
- />Université de Lyon, Université Lyon 1, 69622 Villeurbonne Cedex, France
- />Centre de Recherche Astrophysique de Lyon, CNRS, UMR 5574, 69561 Saint-Genis Laval Cedex, France
- />Ecole Normale Supérieure de Lyon, Lyon, France
| | - M. Asano
- />Physikalisches Institut and Bethe Center for Theoretical Physics, Universität Bonn, 53115 Bonn, Germany
| | - J. Bagger
- />Department of Physics and Astronomy, Johns Hopkins University, Baltimore, MD 21218 USA
- />TRIUMF, Vancouver, BC V6T 2A3 Canada
| | - P. Bechtle
- />Physikalisches Institut, University of Bonn, Bonn, Germany
| | - A. Bharucha
- />Physik Department T31, Technische Universität München, 85748 Garching, Germany
- />CNRS, Aix Marseille U., U. de Toulon, CPT, 13288 Marseille, France
| | - J. Brau
- />Department of Physics, University of Oregon, Eugene, OR 97403 USA
| | - F. Brümmer
- />LUPM, UMR 5299, Université de Montpellier II et CNRS, 34095 Montpellier, France
| | - S. Y. Choi
- />Department of Physics, Chonbuk National University, Jeonju, 561-756 Republic of Korea
| | - A. Denner
- />Universität Würzburg, Institut für Theoretische Physik und Astrophysik, 97074 Würzburg, Germany
| | - K. Desch
- />Physikalisches Institut, University of Bonn, Bonn, Germany
| | - S. Dittmaier
- />Physikalisches Institut, Albert–Ludwigs–Universität Freiburg, 79104 Freiburg, Germany
| | - U. Ellwanger
- />Laboratoire de Physique, UMR 8627, CNRS, Universite de Paris-Sud, 91405 Orsay, France
| | - C. Englert
- />SUPA, School of Physics and Astronomy, University of Glasgow, Glasgow, G12 8QQ UK
| | - A. Freitas
- />PITT PACC, Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA 15260 USA
| | - I. Ginzburg
- />Sobolev Institute of Mathematics and Novosibirsk State University, Novosibirsk, 630090 Russia
| | - S. Godfrey
- />Ottawa-Carleton Institute for Physics, Department of Physics, Carleton University, Ottawa, K1S 5B6 Canada
| | - N. Greiner
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
- />Max-Planck-Institut für Physik, 80805 Munich, Germany
| | - C. Grojean
- />ICREA at IFAE, Universitat Autonoma de Barcelona, 08193 Bellaterra, Spain
| | | | - J. Heisig
- />Institute for Theoretical Particle Physics and Cosmology, RWTH Aachen University, 52056 Aachen, Germany
| | | | - S. Kanemura
- />Department of Physics, University of Toyama, 3190 Gofuku, Toyama, 930-8555 Japan
| | - K. Kawagoe
- />Department of Physics, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka, 812-8581 Japan
| | - R. Kogler
- />University of Hamburg, Hamburg, Germany
| | - M. Krawczyk
- />Faculty of Physics, University of Warsaw, 02093 Warsaw, Poland
| | - A. S. Kronfeld
- />Theoretical Physics Department, Fermi National Accelerator Laboratory, Batavia, IL USA
- />Institute for Advanced Study, Technische Universität München, 85748 Garching, Germany
| | - J. Kroseberg
- />Physikalisches Institut, University of Bonn, Bonn, Germany
| | - S. Liebler
- />II. Institute of Theoretical Physics, University of Hamburg, 22761 Hamburg, Germany
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - J. List
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - F. Mahmoudi
- />Université de Lyon, Université Lyon 1, 69622 Villeurbonne Cedex, France
- />Centre de Recherche Astrophysique de Lyon, CNRS, UMR 5574, 69561 Saint-Genis Laval Cedex, France
- />Ecole Normale Supérieure de Lyon, Lyon, France
| | - Y. Mambrini
- />Laboratoire de Physique, UMR 8627, CNRS, Universite de Paris-Sud, 91405 Orsay, France
| | - S. Matsumoto
- />Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583 Japan
| | - J. Mnich
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - K. Mönig
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - M. M. Mühlleitner
- />Institute for Theoretical Physics, Karlsruhe Institute of Technology, 76128 Karlsruhe, Germany
| | - R. Pöschl
- />Laboratoire de L’accelerateur Lineaire (LAL), CNRS/IN2P3, Orsay, France
| | - W. Porod
- />Universität Würzburg, Institut für Theoretische Physik und Astrophysik, 97074 Würzburg, Germany
| | - S. Porto
- />II. Institute of Theoretical Physics, University of Hamburg, 22761 Hamburg, Germany
| | - K. Rolbiecki
- />Faculty of Physics, University of Warsaw, 02093 Warsaw, Poland
- />Instituto de Fisica Teorica, IFT-UAM/CSIC, Universidad Autonoma de Madrid, Cantoblanco, 28049 Madrid, Spain
| | - M. Schmitt
- />Department of Physics and Astronomy, Northwestern University, Evanston, IL 60091 USA
| | - P. Serpico
- />Laboratoire de Physique Theorique (LAPTh), Université Savoie Mont Blanc, CNRS, B.P.110, 74941 Annecy-le-Vieux, France
| | - M. Stanitzki
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - O. Stål
- />The Oskar Klein Centre, Department of Physics, Stockholm University, 106 91 Stockholm, Sweden
| | - T. Stefaniak
- />Santa Cruz Institute for Particle Physics, University of California Santa Cruz, Santa Cruz, CA USA
| | - D. Stöckinger
- />Institut für Kern- und Teilchenphysik, TU Dresden, 01069 Dresden, Germany
| | - G. Weiglein
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - G. W. Wilson
- />Department of Physics and Astronomy, University of Kansas, Lawrence, KS 66045 USA
| | - L. Zeune
- />ITFA, University of Amsterdam, Science Park 904, 1018 XE Amsterdam, The Netherlands
| | | | - S. Xella
- />Niels Bohr Institute, University of Copenhagen, Kobenhavn, Denmark
| | - J. Bagger
- />Department of Physics and Astronomy, Johns Hopkins University, Baltimore, MD 21218 USA
- />TRIUMF, Vancouver, BC V6T 2A3 Canada
| | - J. Brau
- />Department of Physics, University of Oregon, Eugene, OR 97403 USA
| | - J. Ellis
- />CERN, Geneva, Switzerland
- />Theoretical Particle Physics and Cosmology Group, Department of Physics, King’s College London, Strand, London WC2R 2LS UK
| | - K. Kawagoe
- />Department of Physics, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka, 812-8581 Japan
| | - S. Komamiya
- />Department of Physics, Graduate School of Science, and International Center for Elementary Particle Physics, The University of Tokyo, Tokyo, 113-0033 Japan
| | - A. S. Kronfeld
- />Theoretical Physics Department, Fermi National Accelerator Laboratory, Batavia, IL USA
- />Institute for Advanced Study, Technische Universität München, 85748 Garching, Germany
| | - J. Mnich
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
| | - M. Peskin
- />SLAC, Stanford University, Menlo Park, CA, 94025 USA
| | | | - A. Wagner
- />Deutsches Elektronen Synchrotron (DESY), Hamburg und Zeuthen, 22603 Hamburg, Germany
- />University of Hamburg, Hamburg, Germany
| | - H. Yamamoto
- />Department of Physics, Tohoku University, Sendai, Miyagi Japan
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Gerber RB, Shemesh D, Varner ME, Kalinowski J, Hirshberg B. Ab initio and semi-empirical Molecular Dynamics simulations of chemical reactions in isolated molecules and in clusters. Phys Chem Chem Phys 2014; 16:9760-75. [DOI: 10.1039/c3cp55239j] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Recent progress in “on-the-fly” trajectory simulations of molecular reactions, using different electronic structure methods is discussed, with analysis of the insights that such calculations can provide and of the strengths and limitations of the algorithms available.
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Affiliation(s)
- R. B. Gerber
- Institute of Chemistry and The Fritz Haber Research Center
- The Hebrew University of Jerusalem
- Jerusalem 91904, Israel
- Department of Chemistry
- University of California
| | - D. Shemesh
- Institute of Chemistry and The Fritz Haber Research Center
- The Hebrew University of Jerusalem
- Jerusalem 91904, Israel
| | - M. E. Varner
- Department of Chemistry
- University of California
- Irvine 92697, USA
| | - J. Kalinowski
- Department of Chemistry
- University of Helsinki
- , Finland
| | - B. Hirshberg
- Institute of Chemistry and The Fritz Haber Research Center
- The Hebrew University of Jerusalem
- Jerusalem 91904, Israel
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Coppens P, Benedict JB, Makal A, Trzop E, Kalinowski J, Sokolow J. Single-pulse Laue TR diffraction: methods, results and use of QM/MM theory. Acta Crystallogr A 2011. [DOI: 10.1107/s0108767311097340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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Kalinowski J, Berski S, Latajka Z. AIM and BET approach for ionic and covalent bond evolution in reaction of hydrogen elimination from ammonia and lithium hydride. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2010.11.053] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Kalinowski J, Cocchi M, Murphy L, Williams J, Fattori V. Bi-molecular emissive excited states in platinum (II) complexes for high-performance organic light-emitting diodes. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.09.014] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Kalinowski J, Rückert C, Szczepanowski R, Pühler A. Advanced Genomics and Transcriptomics of Industrial Microorganisms. CHEM-ING-TECH 2010. [DOI: 10.1002/cite.201050335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Kalinowski J, Mezyk J, Meinardi F, Tubino R, Cocchi M, Virgili D. Exciton quenching in emitter blends for organic light emitting devices probed by electric field-dependent time-resolved luminescence. J Chem Phys 2008; 128:124712. [PMID: 18376965 DOI: 10.1063/1.2841458] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We investigate quenching mechanisms of excited states in emitter layers for organic light emitting diodes (LEDs). An extensive study of a strong electric field-induced modulation (over 50%) of the time-resolved luminescence in a diamine derivative (TPD): polycarbonate blend films doped with an organic complex of europium are presented as a typical example of an important class of emitters for organic monochromatic LEDs. Using this method allowed us to identify the quenched species as the excited ligand precursors of the emissive europium ion states. Manipulating the electrode materials and their electrical bias, the electric field-enhanced dissociation, and interaction with injected charge could be separated and found as principal quenching mechanisms. We show the first one to follow the three-dimensional Onsager theory of geminate recombination, and the second one raised by their interaction with the TPD-transported holes. The interaction rate constant is found to be underlain by the three-dimensional diffusion of excited ligand singlets, combining the exciton diffusion coefficient and long-range (Forster type) energy transfer parameters. The dynamic parameters of the hole-precursor excitons interactions, extracted from the experimental data, allow us to establish the criteria for identifying useful ligands and matrices in the optimized design of electrophosphorescent, linelike emitting molecules, and device structure for organic LEDs.
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Affiliation(s)
- J Kalinowski
- Department of Molecular Physics, Gdańsk University of Technology, ul. G. Narutowicza 11/12, 80-952 Gdańsk, Poland.
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Kalinowski J, Mezyk J, Meinardi F, Tubino R, Cocchi M, Virgili D. Electric field and charge induced quenching of luminescence in electroluminescent emitters based on lanthanide complexes. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.01.019] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Anselmetti D, Hansmeier N, Kalinowski J, Martini J, Merkle T, Palmisano R, Ros R, Schmied K, Sischka A, Toensing K. Analysis of subcellular surface structure, function and dynamics. Anal Bioanal Chem 2007; 387:83-9. [PMID: 17082883 DOI: 10.1007/s00216-006-0789-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2006] [Revised: 08/16/2006] [Accepted: 08/18/2006] [Indexed: 10/24/2022]
Abstract
Analytics of single biological cells allows quantitative investigation from a structural, functional and dynamical point of view and opens novel possibilities to an unamplified subcellular analysis. In this article, we report on three different experimental methods and their applications to single cellular systems with a subcellular sensitivity down to the single molecule level. First, the subcellular surface structure of living bacteria (Corynebacterium glutamicum) was investigated with atomic force microscopy (AFM) at the resolution of individual surface layer (S-layer) proteins; discrimination of bacterial strains that lack the expression of hexagonally packed surface layer proteins was possible. Second, quantitative measurement of individual recognition events of membrane-bound receptors on living B-cells was achieved in single cell manipulation and probing experiments with optical tweezers (OT) force spectroscopy. And third, intracellular dynamics of translocating photoactivatable GFP in plant protoplasts (Nicotiana tabacum BY-2) was quantitatively monitored by two-photon laser scanning microscopy (2PLSM).
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Affiliation(s)
- D Anselmetti
- Experimental Biophysics and Applied Nanoscience, Faculty of Physics, Bielefeld University, Universitätsstrasse 25, 33615, Bielefeld, Germany.
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Kalinowski J, Cocchi M, Virgili D, Fattori V, Williams J. Evidence for electric field dependent dissociation of exciplexes in electron donor–acceptor organic solid films. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.10.059] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Affiliation(s)
- J. Kalinowski
- a Department of Molecular Physics , Technical University of Gdańsk , ul. G. Narutowicza 11/12, 80-952 , Gdańsk , Poland
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Cocchi M, Virgili D, Sabatini C, Kalinowski J. Organic electroluminescence from singlet and triplet exciplexes: Exciplex electrophosphorescent diode. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.01.082] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Koch DJ, Rückert C, Rey DA, Mix A, Pühler A, Kalinowski J. Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. Appl Environ Microbiol 2005; 71:6104-14. [PMID: 16204527 PMCID: PMC1265983 DOI: 10.1128/aem.71.10.6104-6114.2005] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2005] [Accepted: 05/10/2005] [Indexed: 11/20/2022] Open
Abstract
Corynebacterium glutamicum ATCC 13032 was found to be able to utilize a broad range of sulfonates and sulfonate esters as sulfur sources. The two gene clusters potentially involved in sulfonate utilization, ssuD1CBA and ssuI-seuABC-ssuD2, were identified in the genome of C. glutamicum ATCC 13032 by similarity searches. While the ssu genes encode proteins resembling Ssu proteins from Escherichia coli or Bacillus subtilis, the seu gene products exhibited similarity to the dibenzothiophene-degrading Dsz monooxygenases of Rhodococcus strain IGTS8. Growth tests with the C. glutamicum wild-type and appropriate mutant strains showed that the clustered genes ssuC, ssuB, and ssuA, putatively encoding the components of an ABC-type transporter system, are required for the utilization of aliphatic sulfonates. In C. glutamicum sulfonates are apparently degraded by sulfonatases encoded by ssuD1 and ssuD2. It was also found that the seu genes seuA, seuB, and seuC can effectively replace ssuD1 and ssuD2 for the degradation of sulfonate esters. The utilization of all sulfonates and sulfonate esters tested is dependent on a novel putative reductase encoded by ssuI. Obviously, all monooxygenases encoded by the ssu and seu genes, including SsuD1, SsuD2, SeuA, SeuB, and SeuC, which are reduced flavin mononucleotide dependent according to sequence similarity, have SsuI as an essential component. Using real-time reverse transcription-PCR, the ssu and seu gene cluster was found to be expressed considerably more strongly during growth on sulfonates and sulfonate esters than during growth on sulfate.
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Affiliation(s)
- D J Koch
- Institut für Genomforschung, Universität Bielefeld, Universitätsstr. 25, D-33615 Bielefeld, Germany
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Kalinowski J, Stampor W, Szmytkowski J, Cocchi M, Virgili D, Fattori V, Di Marco P. Photophysics of an electrophosphorescent platinum (II) porphyrin in solid films. J Chem Phys 2005; 122:154710. [PMID: 15945659 DOI: 10.1063/1.1878612] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We examine electronic processes in platinum (II) octaethyl porphyrin (PtOEP) embedded in an organic solid state matrix and in the form of vacuum-evaporated neat films in conjunction with potential applications of this compound to organic photovoltaic and electrophosphorescent devices. Absorption, photoexcitation, and luminescence spectra indicate the excitonic dimers to be dominant excited states, and their dissociation underlies the charge photogeneration process. Different charge separation distance (1.5 nm and 2.6 nm) in opposite charge carrier pairs preceding dissociation can be distinguished based on the fit of the three-dimensional Onsager theory of geminate recombination to electromodulated luminescence and photoconduction measurements. The near-positive electrode concentrated triplet dimer excitons, produced by strongly 370 nm absorbed light in neat PtOEP films, are efficiently quenched by electron transfer to the metal (Al), generating the positive charge with an efficiency eta+ exceeding 0.15 at high electric fields and dominating the measured photocurrent. Their dissociation efficiency in the bulk, eta- (negatively biased illuminated electrode), is more than one order of magnitude lower than eta+. The dissociation of singlet dimer states dominates the bulk photogeneration process induced by the weakly-absorbed light at 450 nm, with comparable eta+ and eta-. The "hot excited state" underlying the temperature-increasing emission at 540 nm has been attributed to the upper excitonic component Q+ of the first absorption band Q consistent with the exciton concept applied successfully to the interpretation of all dimer-underlain spectroscopic features of PtOEP samples studied.
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Affiliation(s)
- J Kalinowski
- Department of Molecular Physics, Gdańsk University of Technology, 80-952 Gdańsk, Poland.
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Kalinowski J, Stampor W, Cocchi M, Virgili D, Fattori V, Di Marco P. Triplet energy exchange between fluorescent and phosphorescent organic molecules in a solid state matrix. Chem Phys 2004. [DOI: 10.1016/j.chemphys.2003.09.041] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Rückert C, Pühler A, Kalinowski J. Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. J Biotechnol 2003; 104:213-28. [PMID: 12948640 DOI: 10.1016/s0168-1656(03)00158-5] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The genome sequence of Corynebacterium glutamicum, a gram-positive soil bacterium widely used as an amino acid producer, was analyzed by a similarity-based approach to elucidate the pathway for the biosynthesis of L-methionine. The functions of candidate ORFs were derived by gene deletion and, if necessary, by homologous complementation of suitable mutants. Of nine candidate ORFs (four of which were known previously), seven ORFs (cg0754 (metX), cg0755 (metY), cg1290 (metE), cg1702 (metH), cg2383 (metF), cg2536 (aecD), and cg2687 (metB)) were demonstrated to be part of the pathway while two others (cg0961 and cg3086) could be excluded. C. glutamicum synthesizes methionine in three, respectively four steps, starting from homoserine. C. glutamicum possesses two genes with similarity to homoserine acetyltransferases but only MetX can act as such while Cg0961 catalyzes a different, unknown reaction. For the incorporation of the sulfur moiety, the known functions of MetY and MetB could be confirmed and AecD was proven to be the only functional cystathionine beta-lyase in C. glutamicum, while Cg3086 can act neither as cystathionine gamma-synthase nor as cystathionine beta-lyase. Finally, MetE and MetH, which catalyze the conversion of L-homocysteine to L-methionine, could be newly identified, together with MetF which provides the necessary N(5)-methyltetrahydrofolate.
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Affiliation(s)
- C Rückert
- International Graduate School in Bioinformatics and Genome Research, Universität Bielefeld, Universitätsstr. 25, D-33594 Bielefeld, Germany
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Kalinowski J. Self-reported efficacy of an all in-the-ear-canal prosthetic device to inhibit stuttering during one hundred hours of university teaching: an autobiographical clinical commentary. Disabil Rehabil 2003; 25:107-11. [PMID: 12554385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2023]
Abstract
This manuscript outlines the lifelong battle with severe stuttering and describes a new modality of effective amelioration of the disorder from the standpoint of a university professor and researcher in the field of stuttering. Childhood reactions to stuttering are discussed, along with the educational and vocational impact of stuttering. Ongoing therapy was received throughout the formative years and into adulthood, emphasizing reduced rates of speech. The use of Delayed Auditory Feedback (DAF) was found to induce fluent speech, but was considered only as a tool for decreasing the speech rate to achieve fluency. When fluency under DAF was discovered to be possible at faster speech rates, the possibility that the use of DAF and other forms of altered auditory feedback could themselves have an inhibitory effect on stuttering, without concomitant rate reduction was investigated. An In-The-Canal (ITC) fluency-enhancing device was used that provided DAF and Frequency Altered Feedback (FAF) to produce more fluent speech. After 10 months of use, the author was relatively free from stuttering. Speech was natural sounding, relatively spontaneous and unlaboured with an absence of fear. However, further testing (that is currently underway at various centres) is necessary before generalizations can be made.
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Affiliation(s)
- J Kalinowski
- Stuttering Research Lab, East Carolina, University, USA.
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Abstract
ISSUE The state of stuttering therapy continues to be of great concern in the field of speech-language pathology. Despite decades of research and clinical practical, stuttering is still treated by ineffective and inefficient means. PROPOSAL Our research group suggests that therapy failures stem from the use behavioural approaches; procedures that have resulted in only temporary and unnatural alleviation from the symptomatology by masking the disorder. These procedures 'denature' the disorder and induce pseudofluency rather than true fluency. It is proposed that in order to truly provide relief to those who stutter, professionals need to view both the overt and covert components of the disorder from the standpoint of attaining true fluency. Only then can the true syndrome-like nature of stuttering be addressed. In order to achieve true fluency the use of stuttering inhibitors must be incorporated such as choral speech and its permutations to derive natural sounding, stable and effortless speech in those who stutter. CONCLUSION By doing so, the goal is to not only derive stable and natural-sounding speech, but also to help remove such factors as the expectancy, anticipation and the fear of stuttering that generally continue to shackle most people who stutter following behavioural therapy.
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Kalinowski J, Dayalu VN. A common element in the immediate inducement of effortless, natural-sounding, fluent speech in people who stutter: 'the second speech signal'. Med Hypotheses 2002; 58:61-6. [PMID: 11863399 DOI: 10.1054/mehy.2001.1451] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Recent attempts to find a common element in the inducement of fluent speech have focused on Wingate's notion that fluency can be induced via an altered manner of speaking by placing an emphasis on phonation. The problem with this notion of fluency enhancement is that it appears to be too expansive a scheme of fluency. The schemata allows for any forward flowing speech or speech-like act to be considered fluent despite the increased cognitive mediation, the extra effort involved in implementing the procedure, the unnaturalness of the resultant end product, and a lack of stability over time. It is proposed that the only significant characteristics of 'true fluency' are that it is indistinguishable from the typical fluent speech of people who do not stutter, and that it is effortless in nature. This is achieved via the use of a second speech signal which is not cognitive in nature, is operationally delineated, and is easy to manipulate.
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Affiliation(s)
- J Kalinowski
- Stuttering Research Laboratory, East Carolina University, Greenville, North Carolina 27858, USA.
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Abstract
Treatment for stuttering attempts to reduce or eliminate the observable core markers of the disorder, specifically repetitions and prolongation. In this hypothesis, it is proposed that stuttering may be inhibited by two distinct yet related procedures: active inhibition and passive inhibition. Active inhibition is brought about when the person who stutters makes volitional changes to his or her speaking pattern, such as when employing behavioral modification techniques. Passive inhibition automatically inhibits the involuntary stuttering block and can be induced from an external source, such as altered auditory feedback, or by the use of sufficient active inhibition. It is suggested that passively inhibiting stuttering results in speech that is more automatic, natural sounding, and truly fluent speech than the speech that is derived primarily from active inhibition. Evidence of passive inhibition resulting from active inhibition can be seen when people who stutter exhibit uncontrolled fluency following behavioral therapy.
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Affiliation(s)
- T Saltuklaroglu
- Stuttering Research Laboratory, East Carolina University, Greenville, North Carolina 27858, USA
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Kalinowski J, Dayalu VN, Saltuklaroglu T. Re: Second speech signals versus prolonged speech techniques: a reply to Onslow. Int J Lang Commun Disord 2001; 36:527-529. [PMID: 11802502 DOI: 10.1080/13682820110075024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Tauch A, Wehmeier L, Götker S, Pühler A, Kalinowski J. Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism. FEMS Microbiol Lett 2001; 201:53-8. [PMID: 11445167 DOI: 10.1111/j.1574-6968.2001.tb10732.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
The stringent response in Corynebacterium glutamicum was investigated. Sets of rrn-cat fusions were constructed in their native chromosomal position to examine the effects of amino acid starvation in a rel(+) strain and a Deltarel mutant defective in (p)ppGpp metabolism. The expression of the six rrn operons in the rel(+) control was stringently regulated and reduced to 79% upon induction of amino acid starvation. The Deltarel mutant displayed a relaxed regulation and was unable to reduce the rrn expression under amino acid depletion conditions. In addition, the Deltarel mutant grew more slowly in minimal medium than a rel(+) control. This growth effect was restored by a plasmid-encoded copy of rel or, alternatively, by supplementation of the minimal medium with the amino acid mixture casamino acids. In particular, the Deltarel strain of C. glutamicum displayed a requirement for the amino acids histidine and serine.
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Affiliation(s)
- A Tauch
- Department of Genetics, University of Bielefeld, P.O. Box 100131, D-33501 Bielefeld, Germany
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Dayalu VN, Kalinowski J. Re: Stuttering therapy results in pseudofluency. Int J Lang Commun Disord 2001; 36:405-408. [PMID: 11491487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Dayalu VN, Saltuklaroglu T, Kalinowski J, Stuart A, Rastatter MP. Producing the vowel/a/ prior to speaking inhibits stuttering in adults in the English language. Neurosci Lett 2001; 306:111-5. [PMID: 11403970 DOI: 10.1016/s0304-3940(01)01869-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Abstract
This study investigated the effects of producing and listening to the vowel /a/ on the frequency of overt stuttering moments in eight people who stuttered. Stuttering frequency counts were made for the speech produced in the control condition, and after each of these four experimental conditions: (a) producing a vowel /a/ for 4 s; (b) producing a vowel /a/ for 4 s and waiting for 4 s; (c) listening to a recording of the vowel /a/ for 4 s; and (d) listening to a recording of the vowel /a/ for 4 s and waiting for 4 s. A significant reduction in the stuttering frequency was only observed following production of the vowel /a/ without a 4 s delay (P=0.02), suggesting that the vowel production prior to speech, serves as a temporary fluency enhancer. Its similarity to the occurrence of overt stuttering moments (e.g. discrete part-word repetitions and prolongation's) and its relationship to the fundamental nature of the pathology are discussed.
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Affiliation(s)
- V N Dayalu
- Stuttering Research Lab, Department of Communication Sciences and Disorders, East University, Carolina 27858, USA
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36
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Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Pühler A, Bendt AK, Krämer R, Burkovski A. Proteome analysis of Corynebacterium glutamicum. Electrophoresis 2001; 22:1712-23. [PMID: 11425227 DOI: 10.1002/1522-2683(200105)22:9<1712::aid-elps1712>3.0.co;2-g] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
By the use of different Corynebacterium glutamicum strains more than 1.4 million tons of amino acids, mainly L-glutamate and L-lysine, are produced per year. A project was started recently to elucidate the complete DNA sequence of this bacterium. In this communication we describe an approach to analyze the C. glutamicum proteome, based on this genetic information, by a combination of two-dimensional (2-D) gel electrophoresis and protein identification via microsequencing or mass spectrometry. We used these techniques to resolve proteins of C. glutamicum with the aim to establish 2-D protein maps as a tool for basic microbiology and for strain improvement. In order to analyze the C. glutamicum proteome, methods were established to fractionate the C. glutamicum proteins according to functional entities, i.e., cytoplasm, membranes, and cell wall. Protein spots of the cytoplasmic and membrane fraction were identified by N-terminal sequencing, immunodetection, matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS) and electrospray ionization-mass spectrometry (ESI-MS). Additionally, a protocol to analyze proteins secreted by C. glutamicum was established. Approximately 40 protein spots were observed on silver-stained 2-D gels, 12 of which were identified.
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Affiliation(s)
- T Hermann
- Degussa-Hüls AG, Halle/Westfalen, Germany
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Stizza S, Davoli I, Prantera V, Bianconi A, Glinski J, Kalinowski J. Thermoreflectance study of polydiacetylene-bis (toluene sulphonate) single crystal (PDA-TS). ACTA ACUST UNITED AC 2000. [DOI: 10.1088/0022-3719/16/11/019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Tauch A, Pühler A, Kalinowski J, Thierbach G. TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems. Plasmid 2000; 44:285-91. [PMID: 11078655 DOI: 10.1006/plas.2000.1489] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The complete nucleotide sequence of the tetracycline resistance plasmid pAG1 from the gram-positive soil bacterium Corynebacterium glutamicum 22243 (formerly Corynebacterium melassecola 22243) was determined. The R-plasmid has a size of 19,751 bp and contains at least 18 complete open reading frames. The resistance determinant of pAG1 revealed homology to gram-negative tetracycline efflux and repressor systems of Tet classes A through J. The highest levels of amino acid sequence similarity were observed to the transmembrane tetracycline efflux protein TetA(A) and to the tetracycline repressor TetR(A) of transposon Tn1721 with 64 and 56% similarity, respectively. This is the first time a repressor-regulated tet gene has been found in gram-positive bacteria. A new class of tetracycline resistance and repressor proteins, termed TetA(Z) and TetR(Z), is proposed.
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Affiliation(s)
- A Tauch
- Degussa-Hüls AG, Kantstrabetae 2, Halle-Künsebeck, D-33790, Germany.
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Kalinowski J, Dayalu VN, Stuart A, Rastatter MP, Rami MK. Stutter-free and stutter-filled speech signals and their role in stuttering amelioration for English speaking adults. Neurosci Lett 2000; 293:115-8. [PMID: 11027847 DOI: 10.1016/s0304-3940(00)01509-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
This study examined the power of an exogenously generated stuttered speech signal on stuttering frequency when compared to an exogenously generated normal speech signal. In addition, we examined the specific components of the second speech signal, which might be responsible for the inducement of fluency in people who stutter. Eight males and two females who stuttered participated in this study. Experiment I involved meaningful speech: normal continuous speech, normal interrupted speech, stuttered continuous speech, and stuttered interrupted speech, whereas Experiment II involved vowels and consonants: /a/, /a-i-u/, /s/, /s-sh-f/. The results indicated that stuttered and normal speech signals were equally effective in reducing stuttering frequency. Further, the vowels were more powerful than consonants in inducing fluency for people who stutter. It is suggested that acoustic manifestations of stuttering, rather than a problem, may be a natural compensatory mechanism to bypass or inhibit the 'involuntary block' at the neural level.
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Affiliation(s)
- J Kalinowski
- Department of Communication Sciences and Disorders, School of Allied Health Sciences, East Carolina University, Greenville, NC 27858-4353, USA.
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41
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Abstract
A novel phenomenon of fluency enhancement via visual gestures of speech in the absence of traditional auditory feedback is reported herein. The effect on visual choral speech on stuttering frequency was investigated. Ten participants who stuttered recited memorized text aloud under two conditions. In a visual choral speech (VCS) condition participants were instructed to focus their gaze on the face, lips and jaw of a research assistant who 'silently mouthed' the text in unison. In a control condition, participants recited memorized text to the research assistant who sat motionless. A statistically significant (P=0.0025) reduction of approximately 80% in stuttering frequency was observed in the VCS condition. As visual linguistic cues are sufficient to activate the auditory cortex, one may speculate that VCS induces fluency in a similar yet undetermined manner as altered auditory feedback does.
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Affiliation(s)
- J Kalinowski
- Department of Communication Sciences and Disorders, East Carolina University, Greenville, NC 27858-4353, USA.
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Tauch A, Krieft S, Kalinowski J, Pühler A. The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens. Mol Gen Genet 2000; 263:1-11. [PMID: 10732668 DOI: 10.1007/pl00008668] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
The 51,409-bp DNA sequence of the multiresistance plasmid pTP10 from the gram-positive opportunistic human pathogen Corynebacterium striatum M82B has been determined. Fully automated genome interpretation led to the identification of 47 ORFs. Analysis of the genetic organization of pTP10 suggests that the plasmid is composed of eight DNA segments, the boundaries of which are represented by transposons and insertion sequences. The DNA segments of pTP10 are highly similar to (1) a plasmid-encoded erythromycin resistance region from the human pathogen Corynebacterium diphtheriae; (2) a chromosomal DNA region from Mycobacterium tuberculosis; (3) a plasmid-encoded chloramphenicol resistance region from the soil bacterium Corynebacterium glutamicum; (4) transposable elements from phytopathogenic gram-negative Pseudomonas, Xanthomonas and Erwinia species; and (5) a plasmid-encoded aminoglycoside resistance region from the gram-negative fish pathogen Pasteurella piscicida. The complete DNA sequence of pTP10 provides genetic information regarding the mechanisms of resistance to 16 antimicrobial agents that belong to six structural classes. In addition, the mosaic structure of pTP10 represents the evolutionary consolidation into a single plasmid molecule of antimicrobial resistances from microorganisms found in different habitats by means of mobile elements, resulting in the generation of a multiresistant bacterium that can infect humans.
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Affiliation(s)
- A Tauch
- Lehrstuhl für Genetik, Universität Bielefeld, Germany.
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Kalinowski J, Stuart A, Wamsley L, Rastatter MP. Effects of monitoring condition and frequency-altered feedback on stuttering frequency. J Speech Lang Hear Res 1999; 42:1347-1354. [PMID: 10599617 DOI: 10.1044/jslhr.4206.1347] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The purpose of the study was to examine stuttering frequency during speaking conditions that are believed to mitigate stuttering frequency both with normal nonaltered auditory feedback (NAF) and a known fluency-enhancing feedback. Specifically, stuttering frequency was examined as a function of three monitoring conditions under NAF and frequency-altered feedback (FAF): no monitoring (i.e., speaking alone, in the absence of audio and visual recording), audiovisual monitoring (i.e., speaking alone with audiovisual recording), and audiovisual monitoring with observers (i.e., speaking with audiovisual recording in the presence of two observers). Seven adults and one adolescent who stutter served as participants. Stuttering frequency was differentially affected across monitoring conditions under each auditory feedback condition (p = .027). Post hoc analyses revealed no significant difference in stuttering frequency between the two conditions in the absence of the observers (i.e., no monitoring vs. audiovisual monitoring) under NAF (p = .45). There was, however, a significant difference in stuttering frequency for the no-monitoring and audiovisual-monitoring conditions relative to the audiovisual-monitoring-with-observers condition (p = .0002). There was no statistically significant difference in stuttering frequency across monitoring conditions under FAF (p > .05). The findings are consistent with the notion that during NAF stuttering frequency varies as a function of hierarchical socio-environmental conditions in which inanimate monitoring conditions constitute one entity. Such a relationship does not exist during FAF.
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Affiliation(s)
- J Kalinowski
- Department of Communication Sciences and Disorders, East Carolina University, Greenville, NC 27858-4353, USA.
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44
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Rami MK, Kalinowski J, Stuart A, Rastatter MP. Voice onset times and burst frequencies of four velar stop consonants in Gujarati. J Acoust Soc Am 1999; 106:3736-3738. [PMID: 10615709 DOI: 10.1121/1.428226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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45
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Elischewski F, Pühler A, Kalinowski J. Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase. J Biotechnol 1999; 75:135-46. [PMID: 10553653 DOI: 10.1016/s0168-1656(99)00153-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Using gene replacement and transposon Tn5 mutagenesis, an Escherichia coli ilvC panE double mutant completely lacking ketopantoate reductase activity was isolated. This E. coli double mutant was employed to isolate the E. coli panE gene by genetic complementation. The E. coli panE gene is characterized by a 912 bp coding region, which specifies a protein of 303 amino acids with a deduced molecular mass of 33.8 kD. A panE expression plasmid carrying the panE gene under the control of the tac promotor was constructed. Introduction of the panE expression plasmid into E. coli resulted in a threefold increase in ketopantoate reductase activity. It was also shown that the enhanced panE expression in E. coli K12 led to 3.5-fold increase in pantothenate excretion. Pantothenate excretion could even be more enhanced when the growth medium was supplemented with ketopantoate.
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Affiliation(s)
- F Elischewski
- Department of Genetics, University of Bielefeld, Germany
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46
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Quast K, Bathe B, Pühler A, Kalinowski J. The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism. Mol Gen Genet 1999; 262:568-78. [PMID: 10589846 DOI: 10.1007/s004380051119] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
An IS element, termed ISCg2, was identified in the chromosome of Corynebacterium glutamicum ATCC 13032. After screening a cosmid library of the C. glutamicum ATCC 13032 genome, six copies of ISCg2 including their flanking regions were sequenced and analyzed. ISCg2 is 1636 bp in length and has 26-bp imperfect inverted repeats flanked by 3-bp direct repeats. By comparisons with other IS elements, ISCg2 was classified as a member of the IS30 family of insertion sequences. The six copies of ISCg2 were identical at the nucleotide level and were located in intergenic, AT-rich regions of the chromosome. The regions in which the six copies of ISCg2 were inserted displayed significant similarities. This similarity extends over a region of 65 bp, which was assumed to be the target region for ISCg2. Interestingly, five of the six copies of ISCg2 were located adjacent to genes that may be involved in aspartate and glutamate metabolism or its regulation. Investigation of the distribution of ISCg2 showed that the IS element is restricted to certain C. glutamicum strains. Analysis of various integration regions indicates active transposition of ISCg2 in C. glutamicum.
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Affiliation(s)
- K Quast
- Lehrstuhl für Genetik, Fakultät für Biologie, Universität Bielefeld, Germany
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47
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Dusch N, Pühler A, Kalinowski J. Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli. Appl Environ Microbiol 1999; 65:1530-9. [PMID: 10103247 PMCID: PMC91217 DOI: 10.1128/aem.65.4.1530-1539.1999] [Citation(s) in RCA: 95] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The Corynebacterium glutamicum panD gene was identified by functional complementation of an Escherichia coli panD mutant strain. Sequence analysis revealed that the coding region of panD comprises 411 bp and specifies a protein of 136 amino acid residues with a deduced molecular mass of 14.1 kDa. A defined C. glutamicum panD mutant completely lacked L-aspartate-alpha-decarboxylase activity and exhibited beta-alanine auxotrophy. The C. glutamicum panD (panDC. g.) as well as the E. coli panD (panDE.c.) genes were cloned into a bifunctional expression plasmid to allow gene analysis in C. glutamicum as well as in E. coli. The enhanced expression of panDC.g. in C. glutamicum resulted in the formation of two distinct proteins in sodium dodecyl sulfate-polyacrylamide gel electrophoresis, leading to the assumption that the panDC.g. gene product is proteolytically processed into two subunits. By increased expression of panDC.g. in C. glutamicum, the activity of L-aspartate-alpha-decarboxylase was 288-fold increased, whereas the panDE.c. gene resulted only in a 4-fold enhancement. The similar experiment performed in E. coli revealed that panDC.g. achieved a 41-fold increase and that panDE.c. achieved a 3-fold increase of enzyme activity. The effect of the panDC.g. and panDE.c. gene expression in E. coli was studied with a view to pantothenate accumulation. Only by expression of the panDC.g. gene was sufficient beta-alanine produced to abolish its limiting effect on pantothenate production. In cultures expressing the panDE.c. gene, the maximal pantothenate production was still dependent on external beta-alanine supplementation. The enhanced expression of panDC.g. in E. coli yielded the highest amount of pantothenate in the culture medium, with a specific productivity of 140 ng of pantothenate mg (dry weight)-1 h-1.
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Affiliation(s)
- N Dusch
- Lehrstuhl für Genetik, Fakultät für Biologie, Universität Bielefeld, D-33501 Bielefeld, Germany
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Tauch A, Krieft S, Pühler A, Kalinowski J. The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum. FEMS Microbiol Lett 1999; 173:203-9. [PMID: 10220896 DOI: 10.1111/j.1574-6968.1999.tb13503.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Abstract
The tetracycline resistance region of the 50-kb R-plasmid pTP10 from the clinical isolate Corynebacterium striatum M82B was analyzed in Corynebacterium glutamicum ATCC 13032 and confined to a 4.4-kb SphI-Sa/I DNA fragment. Nucleotide sequence analysis revealed two open reading frames, termed tetA and tetB, specifying proteins of 513 and 528 amino acids, respectively. The deduced amino acid sequences of tetAB displayed similarity to ATP-binding cassette transporters including StrV and StrW of Streptomyces glaucescens which are proposed to play a role in the export of streptomycin-like aminoglycosides. An antibiotic susceptibility screening in C. glutamicum showed that the tetAB genes confer resistance to tetracycline, oxytetracycline and to the structurally and functionally unrelated beta-lactam antibiotic oxacillin.
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Affiliation(s)
- A Tauch
- Department of Genetics, University of Bielefeld, Germany
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Abstract
The premise that stuttering disorders develop according to the orthogenetic principle, preceding in a continuous, unilinear fashion from a state of relative lack of differentiation to a state of increasing differentiation and hierarchic integration, was examined. Responses to Woolf's Perceptions of Stuttering Inventory of 87 individuals who stutter were analyzed using a Rasch 1980 latent trait model for dichotomously scored data. Analyses of responses indicated struggle, avoidance, and expectation through the development of stuttering that became increasingly articulated, integrated, stable, and yet responsive to environmental changes. Four stages of development were noted: Stage I was characterized by the expectation of interruptions in the flow of speech, the addition of unnecessary sounds, and general body tension. Stage II was typified by distinctions between troublesome and not so troublesome words and sounds and between the speaker and various audiences and contexts for speaking. In Stage III, speech control decreased despite more focused and complex efforts to control the environment and the speech apparatus. Stage IV was characterized by automatic scanning of all speech, increasingly uncontrolled body movements, and attempts to produce fluent speech by way of comprehensive changes to sound, rhythm, and pitch. Follow-up of 29 respondents suggested the latent struggle was generally stable over time.
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Affiliation(s)
- A G Kalinowski
- Commonwealth Research Center, Massachusetts Mental Health Center, Harvard Medical School, USA
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50
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Rastatter MP, Stuart A, Kalinowski J. Quantitative electroencephalogram of posterior cortical areas of fluent and stuttering participants during reading with normal and altered auditory feedback. Percept Mot Skills 1998; 87:623-33. [PMID: 9842614 DOI: 10.2466/pms.1998.87.2.623] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
In the left and right hemisphere, posterior quantitative electroencephalogram Beta band activity (13.5-25.5 Hz) of seven adult participants who stutter and seven age-matched normal controls was obtained while subjects read text under three experimental conditions of normal auditory feedback, delayed auditory feedback, and frequency-altered feedback. Data were obtained from surface electrodes affixed to the scalp using a commercial electrode cap. Electroencephalogram activity was amplified, band-pass analog-filtered, and then digitized. During nonaltered auditory feedback, stuttering participants displayed Beta band hyperreactivity, with the right temporal-parietal lobe region showing the greatest activity. Under conditions of delayed auditory feedback and frequency-altered auditory feedback, the stuttering participants displayed a decrease in stuttering behavior accompanied by a strong reduction in Beta activity for the posterior-temporal-parietal electrode sites, and the left hemisphere posterior sites evidenced a larger area of reactivity. Such findings suggest than an alteration in the electrical fields of the cortex occurred in the stuttering participants under both conditions, possibly reflecting changes in neurogenerator status or current dipole activity. Further, one could propose that stuttering reflects an anomaly of the sensory-linguistic motor integration wherein each hemisphere generates competing linguistic messages at hyperreactive amplitudes.
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Affiliation(s)
- M P Rastatter
- Department of Communication Sciences and Disorders, East Carolina University, Greenville 27858-4353, USA.
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