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Charbonnel E, Chapuis MP, Taddei A, Schutze MK, Starkie ML, Benoit L, Mouttet R, Ouvrard D. Evaluation of identification methods for cryptic Bactrocera dorsalis (Diptera: Tephritidae) specimens: combining morphological and molecular techniques. J Econ Entomol 2023; 116:2193-2200. [PMID: 37824174 PMCID: PMC10711562 DOI: 10.1093/jee/toad178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 07/05/2023] [Accepted: 09/08/2023] [Indexed: 10/13/2023]
Abstract
The potential for population genomics to elucidate invasion pathways of a species is limited by taxonomic identification issues. The Oriental fruit fly pest, Bactrocera dorsalis (Hendel) belongs to a complex in which several sympatric species are attracted to the same lure used in trapping and are morphologically cryptic and/or reported to hybridize. In this study, we evaluated the taxonomic ambiguity between B. dorsalis and 2 major cryptic species, based on morphological expertise and 289 target specimens sampled across the whole distribution range. Specimens were then subjected to DNA sequence analyses of the COI mitochondrial barcode and the EIF3L nuclear marker to evaluate the potential for molecular identification, in particular for specimens for which morphological identification was inconclusive. To this aim, we produced reference datasets with DNA sequences from target specimens whose morphological identification was unambiguous, which we complemented with 56 new DNA sequences from closest relatives and 76 published and curated DNA sequences of different species in the complex. After the necessary morphological observation, about 3.5% of the target dataset and 47.6% of the specimens from Southeast Asian islands displayed ambiguous character states shared with B. carambolae and/or B. occipitalis. Critical interpretation of DNA sequence data solved morphological ambiguities only when combining both mitochondrial and nuclear markers. COI discriminated B. dorsalis from 5 species; EIF3L and ITS from another species. We recommend this procedure to ensure correct identification of B. dorsalis specimens in population genetics studies and surveillance programs.
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Affiliation(s)
- Emeline Charbonnel
- CBGP, CIRAD, INRAE, Institut Agro, IRD, Univ Montpellier, Montpellier, France
- CIRAD, CBGP, F 34398, Montpellier, France
- ANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France
| | - Marie-Pierre Chapuis
- CBGP, CIRAD, INRAE, Institut Agro, IRD, Univ Montpellier, Montpellier, France
- CIRAD, CBGP, F 34398, Montpellier, France
| | - Andrea Taddei
- ANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France
| | - Mark K Schutze
- Queensland Department of Agriculture and Fisheries, Brisbane, QLD, Australia
| | - Melissa L Starkie
- Queensland Department of Agriculture and Fisheries, Brisbane, QLD, Australia
| | - Laure Benoit
- CBGP, CIRAD, INRAE, Institut Agro, IRD, Univ Montpellier, Montpellier, France
- CIRAD, CBGP, F 34398, Montpellier, France
| | - Raphaëlle Mouttet
- ANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France
| | - David Ouvrard
- ANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France
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Haran J, Li X, Allio R, Shin S, Benoit L, Oberprieler RG, Farrell BD, Brown SDJ, Leschen RAB, Kergoat GJ, McKenna DD. Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils. Proc Biol Sci 2023; 290:20230889. [PMID: 37817603 PMCID: PMC10565390 DOI: 10.1098/rspb.2023.0889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 09/11/2023] [Indexed: 10/12/2023] Open
Abstract
Weevils are an unusually species-rich group of phytophagous insects for which there is increasing evidence of frequent involvement in brood-site pollination. This study examines phylogenetic patterns in the emergence of brood-site pollination mutualism among one of the most speciose beetle groups, the flower weevils (subfamily Curculioninae). We analysed a novel phylogenomic dataset consisting of 214 nuclear loci for 202 weevil species, with a sampling that mainly includes flower weevils as well as representatives of all major lineages of true weevils (Curculionidae). Our phylogenomic analyses establish a uniquely comprehensive phylogenetic framework for Curculioninae and provide new insights into the relationships among lineages of true weevils. Based on this phylogeny, statistical reconstruction of ancestral character states revealed at least 10 independent origins of brood-site pollination in higher weevils through transitions from ancestral associations with reproductive structures in the larval stage. Broadly, our results illuminate the unexpected frequency with which true weevils-typically specialized phytophages and hence antagonists of plants-have evolved mutualistic interactions of ecological significance that are key to both weevil and plant evolutionary fitness and thus a component of their deeply intertwined macroevolutionary success.
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Affiliation(s)
- J. Haran
- CBGP, CIRAD, INRAE, IRD, Institut Agro, Univ. Montpellier, Montpellier, France
| | - X. Li
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, People's Republic of China
- Department of Biological Sciences, University of Memphis, Memphis, TN 38152, USA
- Center for Biodiversity Research, University of Memphis, Memphis, TN 38152, USA
| | - R. Allio
- CBGP, INRAE, IRD, CIRAD, Institut Agro, Univ. Montpellier, Montpellier, France
| | - S. Shin
- Department of Biological Sciences, University of Memphis, Memphis, TN 38152, USA
- Center for Biodiversity Research, University of Memphis, Memphis, TN 38152, USA
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
| | - L. Benoit
- CBGP, CIRAD, INRAE, IRD, Institut Agro, Univ. Montpellier, Montpellier, France
| | - R. G. Oberprieler
- CSIRO, Australian National Insect Collection, GPO Box 1700, Canberra, Australian Capital Territory 2601, Australia
| | - B. D. Farrell
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
| | - S. D. J. Brown
- Bio-Protection Research Centre, Lincoln University, P.O. Box 85084, Lincoln 7647, New Zealand
| | | | - G. J. Kergoat
- CBGP, INRAE, IRD, CIRAD, Institut Agro, Univ. Montpellier, Montpellier, France
| | - D. D. McKenna
- Department of Biological Sciences, University of Memphis, Memphis, TN 38152, USA
- Center for Biodiversity Research, University of Memphis, Memphis, TN 38152, USA
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Chapuis MP, Benoit L, Galan M. Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Mol Ecol Resour 2023; 23:1509-1525. [PMID: 37254809 DOI: 10.1111/1755-0998.13812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 03/08/2023] [Accepted: 05/02/2023] [Indexed: 06/01/2023]
Abstract
Gaining meaningful insights into bacterial communities associated with animal hosts requires the provision of high-quality nucleic acids. Although many studies have compared DNA extraction methods for samples with low bacterial biomass (e.g. water) or specific PCR inhibitors (e.g. plants), DNA extraction bias in samples without inherent technical constraint (e.g. animal samples) has received little attention. Furthermore, there is an urgent need to identify a DNA extraction methods in a high-throughput format that decreases the cost and time for processing large numbers of samples. We here evaluated five DNA extraction protocols, using silica membrane-based spin columns and a 96-well microplate format and based on either mechanical or enzymatic lysis or a combination of both, using three bacterial mock communities and Illumina sequencing of the V4 region of the 16SrRNA gene. Our results showed that none of the DNA extraction methods fully eliminated bias associated with unequal lysis efficiencies. However, we identified a DNA extraction method with a lower bias for each mock community standard. Of these methods, those including an enzymatic lysis showed biases specific to some bacteria. Altogether, these results again demonstrate the importance of DNA extraction standardization to be able to compare the microbiome results of different samples. In this attempt, we advise for the use of the 96-well DNeasy Blood and Tissue kit (Qiagen) with a zirconia bead-beating procedure, which optimizes altogether the cost, handling time and bacteria-specific effects associated with enzymatic lysis.
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Affiliation(s)
- Marie-Pierre Chapuis
- CBGP, CIRAD, Montpellier SupAgro, INRAE, IRD, University of Montpellier, Montpellier, France
- CIRAD, CBGP, Montpellier, France
| | - Laure Benoit
- CBGP, CIRAD, Montpellier SupAgro, INRAE, IRD, University of Montpellier, Montpellier, France
- CIRAD, CBGP, Montpellier, France
| | - Maxime Galan
- CBGP, INRAE, Montpellier SupAgro, INRAE, IRD, University of Montpellier, Montpellier, France
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Hévin NM, Hansen S, Addison P, Benoit L, Kergoat GJ, Haran J. Late Cenozoic environmental changes drove the diversification of a weevil genus endemic to the Cape Floristic Region. ZOOL SCR 2022. [DOI: 10.1111/zsc.12563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Noémie M.‐C. Hévin
- CBGP INRAE, CIRAD, IRD, Institut Agro, Univ. Montpellier Montpellier France
- Université de Poitiers Poitiers France
| | | | | | - Laure Benoit
- CBGP CIRAD, INRAE, IRD, Institut Agro, Univ. Montpellier Montpellier France
| | - Gael J. Kergoat
- CBGP INRAE, CIRAD, IRD, Institut Agro, Univ. Montpellier Montpellier France
| | - Julien Haran
- CBGP CIRAD, INRAE, IRD, Institut Agro, Univ. Montpellier Montpellier France
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Javal M, Terblanche JS, Benoit L, Conlong DE, Lloyd JR, Smit C, Chapuis MP. Does Host Plant Drive Variation in Microbial Gut Communities in a Recently Shifted Pest? Microb Ecol 2022:10.1007/s00248-022-02100-x. [PMID: 35997797 DOI: 10.1007/s00248-022-02100-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 08/05/2022] [Indexed: 06/15/2023]
Abstract
Biotic interactions can modulate the responses of organisms to environmental stresses, including diet changes. Gut microbes have substantial effects on diverse ecological and evolutionary traits of their hosts, and microbial communities can be highly dynamic within and between individuals in space and time. Modulations of the gut microbiome composition and their potential role in the success of a species to maintain itself in a new environment have been poorly studied to date. Here we examine this question in a large wood-boring beetle Cacosceles newmannii (Cerambycidae), that was recently found thriving on a newly colonized host plant. Using 16S metabarcoding, we assessed the gut bacterial community composition of larvae collected in an infested field and in "common garden" conditions, fed under laboratory-controlled conditions on four either suspected or known hosts (sugarcane, tea tree, wattle, and eucalyptus). We analysed microbiome variation (i.e. diversity and differentiation), measured fitness-related larval growth, and studied host plant lignin and cellulose contents, since their degradation is especially challenging for wood-boring insects. We show that sugarcane seems to be a much more favourable host for larval growth. Bacterial diversity level was the highest in field-collected larvae, whereas lab-reared larvae fed on sugarcane showed a relatively low level of diversity but very specific bacterial variants. Bacterial communities were mainly dominated by Proteobacteria, but were significantly different between sugarcane-fed lab-reared larvae and any other hosts or field-collected larvae. We identified changes in the gut microbiome associated with different hosts over a short time frame, which support the hypothesis of a role of the microbiome in host switches.
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Affiliation(s)
- Marion Javal
- Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa.
- Current Address: CEFE, Univ Montpellier, CNRS, EPHE, Montpellier, IRD, France.
| | - John S Terblanche
- Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa
| | - Laure Benoit
- CBGP, Cirad, Montpellier SupAgro, INRA, IRD, Univ. Montpellier, Montpellier, France
| | - Desmond E Conlong
- Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa
- South African Sugarcane Research Institute, Mount Edgecombe, South Africa
| | - James R Lloyd
- Institute for Plant Biotechnology, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
| | - Chantelle Smit
- Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa
| | - Marie-Pierre Chapuis
- CBGP, Cirad, Montpellier SupAgro, INRA, IRD, Univ. Montpellier, Montpellier, France
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Haran J, Procheş Ş, Benoit L, Kergoat GJ. From monocots to dicots: host shifts in Afrotropical derelomine weevils shed light on the evolution of non-obligatory brood pollination mutualism. Biol J Linn Soc Lond 2022. [DOI: 10.1093/biolinnean/blac069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
Weevils from the tribe Derelomini (Curculionidae: Curculioninae) are specialized brood pollinators engaged in mutualistic relationships with several angiosperm lineages. In brood pollination systems, reproductive plant tissues are used for the development of insect larval stages, whereas adult insects pollinate their plant hosts as a reward. The evolutionary history of derelomines in relationship to their hosts is poorly understood and potentially contrasts with other brood pollination systems, wherein a pollinator lineage is usually associated with a single host plant family. In the case of Afrotropical Derelomini, host records indicate a diverse host repertoire consisting of several families of monocot and dicot plants. In this study, we investigate their phylogenetic relationships, timing of diversification and evolution of host use. Our results suggest that derelomine lineages started their diversification ~40 Mya. Reconstructions of host use evolution support an ancestral association with the monocotyledonous palm family (Arecaceae), followed by several shifts towards other plant families in Afrotropical lineages, especially to dicotyledonous plants from the family Ebenaceae (on the genus Euclea L.). Some level of phylogenetic conservatism of host use is recovered for the lineages associated with either palms or Euclea. Multiple instances of sympatric weevil assemblages on the same plant are also unravelled, corresponding to either single or independent colonization events. Overall, the diversity of hosts colonized and the frequency of sympatric assemblages highlighted in non-obligatory plant–derelomine brood pollination systems contrast with what is generally expected from plant–insect brood pollination systems.
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Affiliation(s)
- Julien Haran
- CBGP, CIRAD, INRAE, IRD, Institut Agro, Univ. Montpellier , Montpellier , France
| | - Şerban Procheş
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal , Durban , South Africa
| | - Laure Benoit
- CBGP, CIRAD, INRAE, IRD, Institut Agro, Univ. Montpellier , Montpellier , France
| | - Gael J Kergoat
- CBGP, INRAE, CIRAD, IRD, Montpellier Institut Agro, Univ. Montpellier , Montpellier , France
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Benoit L. ‘Maisons Des Adolescents’, Youth Mental Health in France. Eur Psychiatry 2022. [PMCID: PMC9567213 DOI: 10.1192/j.eurpsy.2022.159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Since 1999, more than 100 “Maisons des Adolescents” (MDAs) - “House of Adolescents” - have been developed in France. These integrated youth-friendly facilities enabled young persons to gain access to specific care. The various medical programs of MDAs depend on the priorities of local communities rather than on official regulations. Most MDAs offer the following essential services: a “Health and Prevention Space” open daily; multidisciplinary consultations; consult liaison for youths hospitalized in medical units; a home visiting service; outpatient clinic including art workshops; refresher courses for school work; peer and parent support groups. The MDAs from the start addressed an age group (young people aged 11-21 years) rather than an illness. They thus provide primary prevention for young persons according to the World Health Organization definition of health as “a state of complete physical, mental and social well-being.” The success of the MDA network is already widely acknowledged by users, professionals, and policymakers.
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Benoit L, Delangle R, Van NT, Villefranque V, Koskas M, Belghiti J, Uzan C, Canlorbe G. [Feasibility and security of laparoscopic (± robotic) total hysterectomy in outpatient surgery: A French multicenter retrospective study]. Gynecol Obstet Fertil Senol 2022; 50:374-381. [PMID: 34979303 DOI: 10.1016/j.gofs.2021.12.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 12/14/2021] [Accepted: 12/20/2021] [Indexed: 11/15/2022]
Abstract
OBJECTIVE To assess the feasibility and safety of total hysterectomy by laparoscopic approach (± robot assisted) in ambulatory. MATERIALS AND METHODS French three-center retrospective study including 165 patients who had laparoscopic (± robot assisted) total hysterectomy scheduled as outpatients from January 2016 to December 2020. Clinical and perioperative data were collected. Factors associated with outpatient failure and rehospitalization were evaluated. RESULTS The outpatient success rate was 92.7%. Factors associated with outpatient failure were incision time>13:00, large volume of blood loss, intraoperative complications with Oslo score≥2, uterine weight≥250g, indication for benign pathology, and robot-assisted approach. Among patients managed as outpatients, 7.2% were rehospitalized at a mean of 10 days from surgery. The factors associated with rehospitalization were the use of an effective antiaggregant or anticoagulant treatment and the use of intraoperative adhesiolysis. Four patients (2.6%) underwent revision surgery. CONCLUSION Minimally invasive hysterectomy can be performed as an outpatient procedure even in cases of malignant pathology. Age and body mass index are not associated with an increased risk of failure or re-hospitalization within one month.
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Affiliation(s)
- L Benoit
- Service de chirurgie et cancérologie gynécologique et mammaire, Hôpital Pitié-Salpêtrière, AP-HP, 75013 Paris, France
| | - R Delangle
- Service de chirurgie et cancérologie gynécologique et mammaire, Hôpital Pitié-Salpêtrière, AP-HP, 75013 Paris, France
| | - N T Van
- Service de chirurgie et cancérologie gynécologique et mammaire, Hôpital Pitié-Salpêtrière, AP-HP, 75013 Paris, France
| | - V Villefranque
- Service de gynécologie obstétrique, Hôpital Simone-Veil, 95600 Eaubonne, France
| | - M Koskas
- Service de gynécologie obstétrique, Bichat, université de Paris, AP-HP, 75018 Paris, France
| | - J Belghiti
- Service de chirurgie et cancérologie gynécologique et mammaire, Hôpital Pitié-Salpêtrière, AP-HP, 75013 Paris, France
| | - C Uzan
- Service de chirurgie et cancérologie gynécologique et mammaire, Hôpital Pitié-Salpêtrière, AP-HP, 75013 Paris, France; Inserm UMR_S_938, Cancer Biology and Therapeutics, centre de recherche Saint-Antoine (CRSA), Sorbonne Université, 75012 Paris, France
| | - G Canlorbe
- Service de chirurgie et cancérologie gynécologique et mammaire, Hôpital Pitié-Salpêtrière, AP-HP, 75013 Paris, France; Inserm UMR_S_938, Cancer Biology and Therapeutics, centre de recherche Saint-Antoine (CRSA), Sorbonne Université, 75012 Paris, France.
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Garabedian C, Plurien A, Benoit L, Kyheng M, Thuillier C, Sanchez M, Turcsak A, Rozenberg P, Berveiller P. Is sonographic measurement of head-perineum distance useful to predict obstetrical anal sphincter injury in case of vacuum delivery? Int J Gynaecol Obstet 2022; 159:751-756. [PMID: 35262188 DOI: 10.1002/ijgo.14170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 02/17/2022] [Accepted: 03/01/2022] [Indexed: 11/10/2022]
Abstract
OBJECTIVE Determine if head-perineum distance (HPD) measurement before vacuum extraction (VE) was predictive of an obstetric anal sphincter injury (OASIS) occurrence. METHODS Retrospective, bicentric (Lille and Poissy, France) cohort study conducted from January 2019 to June 2020. All VE in singleton pregnancies of ≥34 weeks were included. HPD measurement was performed without compression of the tissues before each VE. The judgment criterion was the occurrence of an OASIS. RESULTS Of 12 568 deliveries, VE was performed in 1093 (8.6%). Among these 1093 women undergoing VE, 675 (61.7%) with HPD measurement were included. OASIS was found in 6.5% of women (n = 44; 95% CI 4.5-8.7). HPD was not associated with OASIS (38.5 ± 12.6 mm in women with OASIS vs 37.4 ± 12.0 mm in women without; adjusted OR [aOR] per 5 mm increase = 0.92; 95% CI 0.79-1.06). Increased HPD was associated with higher risk of sequential extraction (aOR = 1.19; 95% CI 1.06-1.32), extraction duration >10 min (aOR = 1.12; 95% CI 1.02-1.23) and shoulder dystocia (aOR = 1.20; 95% CI 1.03-1.40). CONCLUSION Ultrasound-measured head-perineum distance does not predict the occurrence of obstetric anal sphincter injury during a VE. The interest of HPD is more about predicting the success or difficulty of VE rather its specific complications.
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Affiliation(s)
- Charles Garabedian
- Department of Obstetrics, CHU Lille, Lille, France.,ULR 2694 - METRICS: Évaluation des technologies de santé et des pratiques médicales, University of Lille, Lille, France
| | - Alix Plurien
- Department of Obstetrics, CHU Lille, Lille, France.,ULR 2694 - METRICS: Évaluation des technologies de santé et des pratiques médicales, University of Lille, Lille, France
| | - Laure Benoit
- Department of Gynecology and Obstetrics, Poissy-Saint Germain Hospital, Poissy, France
| | - Maeva Kyheng
- ULR 2694 - METRICS: Évaluation des technologies de santé et des pratiques médicales, University of Lille, Lille, France.,Department of Biostatistics, CHU Lille, Lille, France
| | - Claire Thuillier
- Department of Gynecology and Obstetrics, Poissy-Saint Germain Hospital, Poissy, France
| | | | | | - Patrick Rozenberg
- Department of Gynecology and Obstetrics, Poissy-Saint Germain Hospital, Poissy, France
| | - Paul Berveiller
- Department of Gynecology and Obstetrics, Poissy-Saint Germain Hospital, Poissy, France.,UMR 1198 - BREED, INRAE, Paris Saclay University, RHuMA, Montigny-Le-Bretonneux, France
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Rigourd V, Benoit L, Paugam C, Driessen M, Charlier C, Bille E, Pommeret B, Leroy E, Murmu MS, Guyonnet A, Baumot N, Seror JY. Management of lactating breast abscesses by ultrasound-guided needle aspiration and continuation of breastfeeding: A pilot study. J Gynecol Obstet Hum Reprod 2021; 51:102214. [PMID: 34469779 DOI: 10.1016/j.jogoh.2021.102214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Revised: 06/21/2021] [Accepted: 08/27/2021] [Indexed: 11/27/2022]
Abstract
INTRODUCTION Needle aspiration of breast abscesses during lactation are currently recommended as an alternative to surgery only for moderate forms. In case of breast abscess, many patients stop breastfeeding on the advice of a health professional. We reviewed our experience of treatment of lactating breast abscesses by ultrasound-guided aspiration and suggest an algorithm of their management. We also analyzed the continuation of breastfeeding of these patients after advices from trained teams. MATERIEL AND METHODS We conducted a retrospective study from April 2016 to April 2017, including 28 patients referred for a breast abscess during lactation at the Duroc Breast Imaging Center. A management by ultrasound-guided aspiration was proposed to each patient. We collected data about the breastfeeding between October 2018 and January 2019. RESULTS A single aspiration was sufficient in 64.3% of cases. The delay between the occurrence of the abscess and the indication for drainage was significantly higher for patients who have needed finally surgical drainage (p = 0,0031). There were no difference of size of abscesses between patients receiving needle aspiration alone and those who have undergone surgery (p = 0,97). All patients who had been managed by needle aspiration continued breastfeeding after the treatment and 40% of the patients were still breastfeeding at 6 months. CONCLUSION The management of lactating breast abscess by ultrasound-guided needle aspiration is an effective alternative to surgery. It appears to be effective regardless of the size of the abscess and is compatible with the continuation of breastfeeding. Our study has indeed shown that if they are well advised, the majority of patients continue breastfeeding so that it is essential that health professionals be better trained regarding the management of breastfeeding complications.
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Affiliation(s)
- V Rigourd
- Lactarium Régional d'Ile-de-France, Necker Hôpital Enfants malades, 149 rue de Sèvres, Paris 75015, France; Réseau de Santé Périnatal Parisien, Paris, France.
| | - L Benoit
- Department of Obstetrics and Gynecology, Necker Hôpital Enfants malades, Paris, France
| | - C Paugam
- Réseau de Santé Périnatal Parisien, Paris, France
| | - M Driessen
- Department of Obstetrics and Gynecology, Necker Hôpital Enfants malades, Paris, France
| | - C Charlier
- Department of Obstetrics and Gynecology, Necker Hôpital Enfants malades, Paris, France
| | - E Bille
- Department of Microbiology, Necker Hôpital Enfants malades, Paris, France
| | - B Pommeret
- Department of Obstetrics and Gynecology, Lille, France
| | - E Leroy
- Department of Neonatology, Necker Hôpital Enfants malades, Paris, France
| | - M S Murmu
- Lactarium Régional d'Ile-de-France, Necker Hôpital Enfants malades, 149 rue de Sèvres, Paris 75015, France
| | - A Guyonnet
- Lactarium Régional d'Ile-de-France, Necker Hôpital Enfants malades, 149 rue de Sèvres, Paris 75015, France
| | - N Baumot
- Réseau de Santé Périnatal Parisien, Paris, France
| | - J Y Seror
- Department of Radiology, Duroc Breast Imaging Department, Paris, France
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Nguyen-Xuan HT, Benoit L, Dabi Y, Touboul C, Raimond E, Ballester M, Bendifallah S, Collinet P, Kerbage Y, Ouldamer L, Bricou A, Lavoue V, Carcopino X, Huchon C. How to predict para-aortic node involvement in advanced cervical cancer? Development of a predictive score. A FRANCOGYN study. Eur J Surg Oncol 2021; 47:2900-2906. [PMID: 34274203 DOI: 10.1016/j.ejso.2021.06.036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 04/12/2021] [Accepted: 06/29/2021] [Indexed: 10/20/2022] Open
Abstract
INTRODUCTION Node involvement is one of the main prognostic factors for cervical cancer. Para-aortic lymph node (PALN) assessment is crucial for treating advanced cervical cancer, to define irradiation fields. Objective of this study was to develop a score predicting para-aortic lymph node involvement in patients with advanced cervical cancer. PATIENTS AND METHOD We performed a multicenter, retrospective, study on 9 French centers from 2000 to 2015, including patients with advanced squamous cell cervix carcinoma who had PALN status assessed by imaging and/or by surgery. Factors associated with a risk of PALN involvement were determined by univariate and multivariate analysis using a logistic regression model. A score was then developed and validated. RESULTS A total of 1446 patients treated for cervical cancer were included. Of these, 498 had an advanced squamous cell cervical cancer. Ninety-one patients (18.3%) had positive PALN. After univariate and multivariate analysis, tumor size on pelvic MRI, initial SCC, and suspected pelvic node involvement on PET-CT were included in our score. This model allowed the population to be divided into 3 risk groups. Area under the ROC curve of the score was 0.81 (95%CI = 0.72-0.90). In the low-risk group, 9% (28/287) had PALN involvement, whereas in the high-risk group, 43% (22/51) had PALN involvement. CONCLUSION We developed a simple score predicting PALN involvement in advanced cervical cancers. Three risk groups can be defined, and patients considered to be at low risk may avoid para-aortic staging as well as extensive field irradiation.
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Affiliation(s)
- H T Nguyen-Xuan
- Department of Gynaecology and Obstetrics, Intercommunal Hospital Centre of Poissy-Saint-Germain-en-Laye, 78300, Poissy, France; Department of Gynaecology and Obstetrics, Assistance Publique - Hôpitaux de Paris, Hôpital Européen Georges Pompidou, France.
| | - L Benoit
- Department of Gynaecology and Obstetrics, Assistance Publique - Hôpitaux de Paris, Hôpital Européen Georges Pompidou, France; Department of Gynaecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6, Institut Universitaire de Cancérologie (IUC), Paris, France
| | - Y Dabi
- Department of Obstetrics and Gynecology, Centre Hospitalier Intercommunal, Créteil, France
| | - C Touboul
- Department of Gynaecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6, Institut Universitaire de Cancérologie (IUC), Paris, France
| | - E Raimond
- Department of Obstetrics and Gynaecology, Institute Alix de Champagne University Hospital, Reims, France
| | - M Ballester
- Department of Obstetrics and Gynecology, Groupe Hospitalier Diaconesses Croix Saint-Simon, Paris, France
| | - S Bendifallah
- Department of Gynaecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6, Institut Universitaire de Cancérologie (IUC), Paris, France
| | - P Collinet
- Department of Obstetrics and Gynecology, Centre Hospitalier Régional Universitaire, Lille, France
| | - Y Kerbage
- Department of Obstetrics and Gynecology, Centre Hospitalier Régional Universitaire, Lille, France
| | - L Ouldamer
- Department of Obstetrics and Gynaecology, Centre Hospitalier Régional Universitaire de Tours, Hôpital Bretonneau, Tours, France
| | - A Bricou
- Department of Obstetrics and Gynecology, Groupe Hospitalier Diaconesses Croix Saint-Simon, Paris, France; Department of Obstetrics and Gynecology, Jean-Verdier University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Paris, France
| | - V Lavoue
- CRLCC Eugène-Marquis, Service de Gynécologie, CHU de Rennes, Université de Rennes 1, Rennes, France
| | - X Carcopino
- Department of Obstetrics and Gynecology, Hopital Nord, APHM, Marseille, France
| | - C Huchon
- Department of Gynaecology and Obstetrics, Intercommunal Hospital Centre of Poissy-Saint-Germain-en-Laye, 78300, Poissy, France; EA 7285 Risques Cliniques et Sécurité en Santé des Femmes, University of Versailles-Saint-Quentin en Yvelines, France; Department of Obstetrics and Gynecology, Assistance Publique - Hôpitaux de Paris, Hôpital LARIBOISIERE, University of Paris, France
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12
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Hansen S, Addison P, Benoit L, Haran JM. Barcoding pest species in a biodiversity hot-spot: the South African polyphagous broad-nosed weevils (Coleoptera, Curculionidae, Entiminae). Biodivers Data J 2021; 9:e66452. [PMID: 34257510 PMCID: PMC8263552 DOI: 10.3897/bdj.9.e66452] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Accepted: 06/09/2021] [Indexed: 11/25/2022] Open
Abstract
Polyphagous broad nosed weevils (Curculionidae: Entiminae) constitute a large and taxonomically challenging subfamily that contains economically significant agricultural pests worldwide. South Africa is a hot-spot for biodiversity and several species of indigenous and endemic genera of Entiminae have shifted on to cultivated plants, with some being phytosanitary pests. The sporadic pest status of many species (where the species has an occasional economic impact on the agricultural industry, but is not encountered often enough that is is readily recognisable by researchers and agricultural extension workers) and the presence of pest complexes and cryptic species represent an identification challenge to non-specialists. Furthermore, no comprehensive identification tools exist to identify immature stages that may be found in crops/soil. In this paper, a curated barcoding database with 70 COI sequences from 41 species (39 Entiminae, 2 Cyclominae) is initiated, to assist with the complexity of identification of species in this group.
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Affiliation(s)
- Steffan Hansen
- Stellenbosch University, Stellenbosch, South AfricaStellenbosch UniversityStellenboschSouth Africa
| | - Pia Addison
- University of Stellenbosch, Stellenbosch, South AfricaUniversity of StellenboschStellenboschSouth Africa
| | - Laure Benoit
- CBGP, CIRAD, Montpellier SupAgro, INRA, IRD, Montpellier University, Montpellier, FranceCBGP, CIRAD, Montpellier SupAgro, INRA, IRD, Montpellier UniversityMontpellierFrance
| | - Julien M Haran
- CBGP, CIRAD, Montpellier SupAgro, INRA, IRD, Montpellier University, Montpellier, FranceCBGP, CIRAD, Montpellier SupAgro, INRA, IRD, Montpellier UniversityMontpellierFrance
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13
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Javal M, Terblanche JS, Conlong DE, Delahaye N, Grobbelaar E, Benoit L, Lopez-Vaamonde C, Haran JM. DNA barcoding for bio-surveillance of emerging pests and species identification in Afrotropical Prioninae (Coleoptera, Cerambycidae). Biodivers Data J 2021; 9:e64499. [PMID: 33967581 PMCID: PMC8099841 DOI: 10.3897/bdj.9.e64499] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 04/11/2021] [Indexed: 11/18/2022] Open
Abstract
DNA barcoding has been succesfully used for bio-surveillance of forest and agricultural pests in temperate areas, but has few applications in the tropics and particulary in Africa. Cacoscelesnewmannii (Coleoptera: Cerambycidae) is a Prioninae species that is locally causing extensive damage in commercially-grown sugarcane in the KwaZulu-Natal Province in South Africa. Due to the risk of spread of this species to the rest of southern Africa and to other sugarcane growing regions, clear and easy identification of this pest is critical for monitoring and for phytosanitary services. The genus Cacosceles Newman, 1838 includes four species, most being very similar in morphology. The damaging stage of the species is the larva, which is inherently difficult to distinguish morphologically from other Cerambycidae species. A tool for rapid and reliable identification of this species was needed by plant protection and quarantine agencies to monitor its potential abundance and spread. Here, we provide newly-generated barcodes for C.newmannii that can be used to reliably identify any life stage, even by non-trained taxonomists. In addition, we compiled a curated DNA barcoding reference library for 70 specimens of 20 named species of Afrotropical Prioninae to evaluate DNA barcoding as a valid tool to identify them. We also assessed the level of deeply conspecific mitochondrial lineages. Sequences were assigned to 42 different Barcode Index Numbers (BINs), 28 of which were new to BOLD. Out of the 20 named species barcoded, 11 (52.4%) had their own unique Barcode Index Number (BIN). Eight species (38.1%) showed multiple BINs with no morphological differentiation. Amongst them, C.newmannii showed two highly divergent genetic clusters which co-occur sympatrically, but further investigation is required to test whether they could represent new cryptic species.
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Affiliation(s)
- Marion Javal
- Centre for Invasion Biology, Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa Centre for Invasion Biology, Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University Stellenbosch South Africa
| | - John S Terblanche
- Centre for Invasion Biology, Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa Centre for Invasion Biology, Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University Stellenbosch South Africa
| | - Desmond E Conlong
- South African Sugarcane Research Institute, Mount Edgecombe, South Africa South African Sugarcane Research Institute Mount Edgecombe South Africa.,Centre for Invasion Biology, Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa Centre for Invasion Biology, Department of Conservation Ecology & Entomology, Faculty of AgriSciences, Stellenbosch University Stellenbosch South Africa
| | | | - Elizabeth Grobbelaar
- Biosystematics Division, ARC-Plant Protection Research Institute, Private Bag X134, Queenswood, Pretoria, South Africa Biosystematics Division, ARC-Plant Protection Research Institute, Private Bag X134, Queenswood Pretoria South Africa
| | - Laure Benoit
- CBGP, Cirad, Montpellier SupAgro, INRA, IRD, Univ. Montpellier, Montpellier, France CBGP, Cirad, Montpellier SupAgro, INRA, IRD, Univ. Montpellier Montpellier France
| | - Carlos Lopez-Vaamonde
- INRAE, URZF, Orleans, France INRAE, URZF Orleans France.,IRBI, UMR 7261, CNRS-Université de Tours, Tours, France IRBI, UMR 7261, CNRS-Université de Tours Tours France
| | - Julien M Haran
- CBGP, Cirad, Montpellier SupAgro, INRA, IRD, Univ. Montpellier, Montpellier, France CBGP, Cirad, Montpellier SupAgro, INRA, IRD, Univ. Montpellier Montpellier France
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14
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Benoit L, Mir O, Vialard F, Berveiller P. Cancer during Pregnancy: A Review of Preclinical and Clinical Transplacental Transfer of Anticancer Agents. Cancers (Basel) 2021; 13:1238. [PMID: 33799824 PMCID: PMC8000411 DOI: 10.3390/cancers13061238] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 02/19/2021] [Accepted: 03/01/2021] [Indexed: 12/27/2022] Open
Abstract
The occurrence of cancer during pregnancy is observed in 1 in 1000 pregnancies and is expected to increase given the trend of delaying childbearing. While breast cancer is the most common, the incidence of other cancers, such as cervical, ovarian, and lung cancers as well as hemopathies and melanomas, is also increasing. Thus, cancer occurrence in pregnant women raises questions of management during pregnancy and, especially, assessment of the treatment benefit-risk ratio to ensure optimal management for the mother while ensuring the safety of the fetus. Chemotherapy remains a cornerstone of cancer management. If the use of anticancer agents appears possible during pregnancy, while avoiding the first trimester, the extent of placental transfer of different anticancer agents varies considerably thereafter. Furthermore, the significant physiological pharmacokinetic variations observed in pregnant women may have an impact on the placental transfer of anticancer agents. Given the complexity of predicting placental transfer of anticancer agents, preclinical studies are therefore mandatory. The aim of this review was to provide updated data on in vivo and ex vivo transplacental transfer of anticancer agents used in the management of the most common pregnancy-associated cancers to better manage these highly complex cases.
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Affiliation(s)
- Laure Benoit
- Centre Hospitalier Intercommunal de Poissy Saint-Germain-en-Laye, Department of Gynecology and Obstetrics, 78300 Poissy, France;
| | - Olivier Mir
- Department of Ambulatory Cancer Care, Gustave Roussy, 94800 Villejuif, France;
| | - François Vialard
- Université Paris-Saclay, UMR 1198, INRAE, BREED, RHuMA, 78350 Jouy-en-Josas, France;
- Ecole Nationale Vétérinaire d’Alfort, BREED, 94700 Maisons-Alfort, France
- Centre Hospitalier Intercommunal de Poissy Saint-Germain-en-Laye, Department of Genetics, 78300 Poissy, France
| | - Paul Berveiller
- Centre Hospitalier Intercommunal de Poissy Saint-Germain-en-Laye, Department of Gynecology and Obstetrics, 78300 Poissy, France;
- Université Paris-Saclay, UMR 1198, INRAE, BREED, RHuMA, 78350 Jouy-en-Josas, France;
- Ecole Nationale Vétérinaire d’Alfort, BREED, 94700 Maisons-Alfort, France
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15
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Haran J, Ndzana Abanda RFX, Benoit L, Bakoumé C, Beaudoin-Ollivier L. Multilocus phylogeography of the world populations of Elaeidobius kamerunicus (Coleoptera, Curculionidae), pollinator of the palm Elaeis guineensis. Bull Entomol Res 2020; 110:654-662. [PMID: 32381154 DOI: 10.1017/s0007485320000218] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Elaeidobius kamerunicus Faust (Coleoptera, Curculionidae) is one of the specific pollinators on inflorescences of the African oil palm Elaeis guineensis Jacquin. This derelomine weevil is native to tropical Africa. During the late 20th century, it was introduced into all tropical regions where E. guineensis is grown, in order to improve its pollination and fruit set. Despite an overall success, a decline in pollination efficiency has been documented in several regions. In this study, we reconstructed a multilocus phylogeography of the world populations of E. kamerunicus, in order to explore its genetic diversity in its native and introduced ranges. Our results showed that African populations of E. kamerunicus are forming two differentiated mitochondrial clusters in West and central Africa, forming a contact zone along the Cameroon Volcanic Line. The existence of this sharp contact zone along this weak altitudinal barrier suggests that other parameters, such as climate, may be driving the distribution of populations. A differential genetic structure between mitochondrial and nuclear genes, and the strong level of genetic structure of the mitochondrial gene, also suggest sex-biased dispersal in this species, with males dispersing more than females. The genetic structure inferred from Asian and South American populations suggests that they originate from populations of both western and central tropical Africa and that a bottleneck has probably been experienced by these populations.
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Affiliation(s)
- Julien Haran
- CBGP, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
| | | | - Laure Benoit
- CBGP, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
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16
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Madrières S, Tatard C, Murri S, Vulin J, Galan M, Piry S, Pulido C, Loiseau A, Artige E, Benoit L, Leménager N, Lakhdar L, Charbonnel N, Marianneau P, Castel G. How Bank Vole-PUUV Interactions Influence the Eco-Evolutionary Processes Driving Nephropathia Epidemica Epidemiology-An Experimental and Genomic Approach. Pathogens 2020; 9:E789. [PMID: 32993044 PMCID: PMC7599775 DOI: 10.3390/pathogens9100789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 09/21/2020] [Accepted: 09/23/2020] [Indexed: 11/16/2022] Open
Abstract
In Europe, Puumala virus (PUUV) is responsible for nephropathia epidemica (NE), a mild form of hemorrhagic fever with renal syndrome (HFRS). Despite the presence of its reservoir, the bank vole, on most of French territory, the geographic distribution of NE cases is heterogeneous and NE endemic and non-endemic areas have been reported. In this study we analyzed whether bank vole-PUUV interactions could partly shape these epidemiological differences. We performed crossed-experimental infections using wild bank voles from French endemic (Ardennes) and non-endemic (Loiret) areas and two French PUUV strains isolated from these areas. The serological response and dynamics of PUUV infection were compared between the four cross-infection combinations. Due to logistical constraints, this study was based on a small number of animals. Based on this experimental design, we saw a stronger serological response and presence of PUUV in excretory organs (bladder) in bank voles infected with the PUUV endemic strain. Moreover, the within-host viral diversity in excretory organs seemed to be higher than in other non-excretory organs for the NE endemic cross-infection but not for the NE non-endemic cross-infection. Despite the small number of rodents included, our results showed that genetically different PUUV strains and in a lesser extent their interaction with sympatric bank voles, could affect virus replication and diversity. This could impact PUUV excretion/transmission between rodents and to humans and in turn at least partly shape NE epidemiology in France.
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Affiliation(s)
- Sarah Madrières
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (J.V.); (P.M.)
| | - Caroline Tatard
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Séverine Murri
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (J.V.); (P.M.)
| | - Johann Vulin
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (J.V.); (P.M.)
| | - Maxime Galan
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Sylvain Piry
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Coralie Pulido
- ANSES—Laboratoire de Lyon, Plateforme d’Expérimentation Animale, 69007 Lyon, France; (C.P.); (L.L.)
| | - Anne Loiseau
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Emmanuelle Artige
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Laure Benoit
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Nicolas Leménager
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Latifa Lakhdar
- ANSES—Laboratoire de Lyon, Plateforme d’Expérimentation Animale, 69007 Lyon, France; (C.P.); (L.L.)
| | - Nathalie Charbonnel
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
| | - Philippe Marianneau
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (J.V.); (P.M.)
| | - Guillaume Castel
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (S.M.); (C.T.); (M.G.); (S.P.); (A.L.); (E.A.); (L.B.); (N.L.); (N.C.)
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Murri S, Madrières S, Tatard C, Piry S, Benoit L, Loiseau A, Pradel J, Artige E, Audiot P, Leménager N, Lacôte S, Vulin J, Charbonnel N, Marianneau P, Castel G. Detection and Genetic Characterization of Puumala Orthohantavirus S-Segment in Areas of France Non-Endemic for Nephropathia Epidemica. Pathogens 2020; 9:pathogens9090721. [PMID: 32882953 PMCID: PMC7559001 DOI: 10.3390/pathogens9090721] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 08/15/2020] [Accepted: 08/22/2020] [Indexed: 12/30/2022] Open
Abstract
Puumala virus (PUUV) in Europe causes nephropathia epidemica (NE), a mild form of hemorrhagic fever with renal syndrome (HFRS). The incidence of NE is highly heterogeneous spatially, whereas the geographic distribution of the wild reservoir of PUUV, the bank vole, is essentially homogeneous. Our understanding of the processes driving this heterogeneity remains incomplete due to gaps in knowledge. Little is known about the current distribution and genetic variation of PUUV in the areas outside the well-identified zones of NE endemicity. We trapped bank voles in four forests in French regions in which NE is considered non-endemic, but sporadic NE cases have been reported recently. We tested bank voles for anti-PUUV IgG and characterized the S segment sequences of PUUV from seropositive animals. Phylogenetic analyses revealed specific amino-acid signatures and genetic differences between PUUV circulating in non-endemic and nearby NE-endemic areas. We also showed, in temporal surveys, that the amino-acid sequences of PUUV had undergone fewer recent changes in areas non-endemic for NE than in endemic areas. The evolutionary history of the current French PUUV clusters was investigated by phylogeographic approaches, and the results were considered in the context of the history of French forests. Our findings highlight the need to monitor the circulation and genetics of PUUV in a larger array of bank vole populations, to improve our understanding of the risk of NE.
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Affiliation(s)
- Séverine Murri
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (S.M.); (S.L.); (J.V.); (P.M.)
| | - Sarah Madrières
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (S.M.); (S.L.); (J.V.); (P.M.)
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Caroline Tatard
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Sylvain Piry
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Laure Benoit
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Anne Loiseau
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Julien Pradel
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Emmanuelle Artige
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Philippe Audiot
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Nicolas Leménager
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Sandra Lacôte
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (S.M.); (S.L.); (J.V.); (P.M.)
| | - Johann Vulin
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (S.M.); (S.L.); (J.V.); (P.M.)
| | - Nathalie Charbonnel
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
| | - Philippe Marianneau
- ANSES—Laboratoire de Lyon, Unité Virologie, 69007 Lyon, France; (S.M.); (S.M.); (S.L.); (J.V.); (P.M.)
| | - Guillaume Castel
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, 34000 Montpellier, France; (C.T.); (S.P.); (L.B.); (A.L.); (J.P.); (E.A.); (P.A.); (N.L.); (N.C.)
- Correspondence:
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18
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Lopez G, Bennis AC, Barbin Y, Sentchev A, Benoit L, Marié L. Surface currents in the Alderney Race from high-frequency radar measurements and three-dimensional modelling. Philos Trans A Math Phys Eng Sci 2020; 378:20190494. [PMID: 32713313 PMCID: PMC7423030 DOI: 10.1098/rsta.2019.0494] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 06/08/2020] [Indexed: 06/11/2023]
Abstract
Two weeks of high-frequency radar measurements collected at the Alderney Race are compared with the results of a three-dimensional fully coupled wave-current model. Spatial current measurements are rare in this site, otherwise well investigated through modelling. Thus, the radar measurements offer a unique opportunity to examine the spatial reliability of numerical results, and can help to improve our understanding of the complex currents in the area. Comparison of observed and modelled surface current velocities showed a good agreement between the methods, represented by root mean squared errors ranging from 14 to 40 cm s-1 and from 18 to 60 cm s-1 during neap and spring tides, respectively. Maximum errors were found in shallow regions with consistently high current velocities, represented by mean neap and spring magnitudes of 1.25 m s-1 and 2.7 m s-1, respectively. Part of the differences between modelled and observed surface currents in these areas are thought to derive from limitations in the k-epsilon turbulence model used to simulate vertical mixing, when the horizontal turbulent transport is high. In addition, radar radial currents showed increased variance over the same regions, and might also be contributing to the discrepancies found. Correlation analyses yielded magnitudes above 0.95 over the entire study area, with better agreement during spring than during neap tides, probably because of an increase in the phase lag between radar and model velocities during the latter. This article is part of the theme issue 'New insights on tidal dynamics and tidal energy harvesting in the Alderney Race'.
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Affiliation(s)
- G. Lopez
- Morphodynamique Continentale et Côtière (M2C), CNRS UMR 6143, Univ. Caen Normandie, 14000 Caen, France
| | - A.-C. Bennis
- Morphodynamique Continentale et Côtière (M2C), CNRS UMR 6143, Univ. Caen Normandie, 14000 Caen, France
| | - Y. Barbin
- Retired from Institut Méditerranéen d’Oceanologie (MIO), CNRS UMR 7294, IRD, Univ. Toulon, Univ. Aix-Marseille, 83041, Toulon, France
| | - A. Sentchev
- Laboratory of Oceanology and Geosciences, University Littoral Côte d’Opale, Univ. Lille, CNRS UMR 8187 LOG, Wimereux 62930, France
| | - L. Benoit
- Morphodynamique Continentale et Côtière (M2C), CNRS UMR 6143, Univ. Caen Normandie, 14000 Caen, France
| | - L. Marié
- Laboratoire d’Océanographie Physique et Spatiale (LOPS), CNRS UMR 6523, Univ. Brest, Ifremer, IRD, 29280 Plouzané, France
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19
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Sow A, Haran J, Benoit L, Galan M, Brévault T. DNA Metabarcoding as a Tool for Disentangling Food Webs in Agroecosystems. Insects 2020; 11:E294. [PMID: 32403224 PMCID: PMC7290477 DOI: 10.3390/insects11050294] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 05/03/2020] [Accepted: 05/05/2020] [Indexed: 12/26/2022]
Abstract
Better knowledge of food webs and related ecological processes is fundamental to understanding the functional role of biodiversity in ecosystems. This is particularly true for pest regulation by natural enemies in agroecosystems. However, it is generally difficult to decipher the impact of predators, as they often leave no direct evidence of their activity. Metabarcoding via high-throughput sequencing (HTS) offers new opportunities for unraveling trophic linkages between generalist predators and their prey, and ultimately identifying key ecological drivers of natural pest regulation. Here, this approach proved effective in deciphering the diet composition of key predatory arthropods (nine species.; 27 prey taxa), insectivorous birds (one species, 13 prey taxa) and bats (one species; 103 prey taxa) sampled in a millet-based agroecosystem in Senegal. Such information makes it possible to identify the diet breadth and preferences of predators (e.g., mainly moths for bats), to design a qualitative trophic network, and to identify patterns of intraguild predation across arthropod predators, insectivorous vertebrates and parasitoids. Appropriateness and limitations of the proposed molecular-based approach for assessing the diet of crop pest predators and trophic linkages are discussed.
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Affiliation(s)
- Ahmadou Sow
- Département de Biologie Animale, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal
| | - Julien Haran
- CIRAD, UMR CBGP, F-34398 Montpellier, France; (J.H.); (L.B.)
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université de Montpellier, F-34988 Montpellier, France;
| | - Laure Benoit
- CIRAD, UMR CBGP, F-34398 Montpellier, France; (J.H.); (L.B.)
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université de Montpellier, F-34988 Montpellier, France;
| | - Maxime Galan
- CBGP, INRAE, CIRAD, IRD, Institut Agro, Université de Montpellier, F-34988 Montpellier, France;
- INRA, UMR CBGP, F-34398 Montpellier, France
| | - Thierry Brévault
- CIRAD, UPR AIDA, Centre de recherche ISRA-IRD, Dakar, Senegal;
- AIDA, Univ Montpellier, CIRAD, F-34398 Montpellier, France
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20
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Abstract
We report a rare case of ureterohydronephrosis due to an improperly positioned menstrual cup.
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Affiliation(s)
- Yoann Athiel
- Assistance Publique Hôpitaux de Paris, Paris, France
| | - Laure Benoit
- Assistance Publique Hôpitaux de Paris, Paris, France
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21
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Garba M, Loiseau A, Tatard C, Benoit L, Gauthier N. Patterns and drivers of genetic diversity and structure in the biological control parasitoid Habrobracon hebetor in Niger. Bull Entomol Res 2019; 109:794-811. [PMID: 30968790 DOI: 10.1017/s0007485319000142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
When a promising natural enemy of a key pest exists locally, it is a common practice in biological control (BC) to rear and release it for supplementary control in the targeted agroecosystem even though significant knowledge gaps concerning pre/post release may still exist. Incorporating genetic information into BC research fills some of these gaps. Habrobracon hebetor, a parasitoid of many economically important moths that infest stored and field crops worldwide is commonly used, particularly against the millet head miner (MHM), a key pest of millet in Sahelian countries. To advance our knowledge on how H. hebetor that occurs naturally in open-field cropping systems and grain stores as well as being mass-produced and released for MHM control, performs in millet agroecosystems in Niger we evaluated its population genetics using two mitochondrial and 21 microsatellite markers. The field samples were genetically more diverse and displayed heterozygote excess. Very few field samples had faced significant recent demographic bottlenecks. The mating system (i.e. nonrandom mating with complementary sex determination) of this species may be the major driver of these findings rather than bottlenecks caused by the small number of individuals released and the scarcity of hosts during the longlasting dry season in Niger. H. hebetor population structure was represented by several small patches and genetically distinct individuals. Gene flow occurred at local and regional scales through human-mediated and natural short-distance dispersal. These findings highlight the importance of the mating system in the genetic diversity and structure of H. hebetor populations, and contribute to our understanding of its reported efficacy against MHM in pearl millet fields.
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Affiliation(s)
- M Garba
- Direction Générale de la Protection des Végétaux, Ministère de l'Agriculture, BP323, Niamey, Niger
| | - A Loiseau
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France
| | - C Tatard
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France
| | - L Benoit
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France
| | - N Gauthier
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France
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22
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Benoit L, Boujenah J, Poncelet C, Grynberg M, Carbillon L, Nyangoh Timoh K, Touleimat S, Mathieu D'Argent E, Jayot A, Owen C, Lavoue V, Roman H, Darai E, Bendifallah S. Predicting the likelihood of a live birth for women with endometriosis-related infertility. Eur J Obstet Gynecol Reprod Biol 2019; 242:56-62. [PMID: 31563819 DOI: 10.1016/j.ejogrb.2019.09.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 09/04/2019] [Accepted: 09/18/2019] [Indexed: 01/10/2023]
Abstract
OBJECTIVE Endometriosis affects 10% of women in reproductive age and alters fertility. Its management is still debated notably the timing of surgery and ART in infertility. Several tools have been created to guide the practitioner and the couple yet many limitations persist. The objective is to create a nomogram to predict the likelihood of a live birth after surgery followed by assisted reproductive technology (ART) for patients with endometriosis-related infertility. STUDY DESIGN All women in a public university hospital who attempted to conceive by ART after surgery for endometriosis-related infertility from 2004 to 2016 were included. We created a model using multivariable linear regression based on a retrospective database. RESULT Of the 297 women included, 171 (57.6%) obtained a live birth. Age, duration of infertility, number of ICSI-IVF cycles, ovarian reserve and the revised American Fertility Society (rAFS) score were included in the nomogram. The predictive model had an area under the curve (AUC) of 0.77 (95% CI, 0.75-0.79) and was well calibrated. The external validation of the model was achieved with an AUC of 0.71 (95% CI, 0.69-0.73) and calibration was good. The staging accuracy according to AUC criteria for the nomogram compared to the currently used Endometriosis Infertility Index to predict live births were 0.77 (95% CI, 0.75-0.79) and 0.60 (95% CI: 0.57-0.63), respectively. CONCLUSION This simple tool appears to accurately predict the likelihood of a live birth for a patient undergoing ART after surgery for endometriosis-related infertility. It could be used to counsel patients in their choice between spontaneous versus ART conception, or oocyte donation.
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Affiliation(s)
- L Benoit
- Department of Gynecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Sorbonne University, Paris, France.
| | - J Boujenah
- Department of Obstetrics, Gynecology and Assisted Reproductive Technologies Centers, Hôpitaux Universitaires Paris Seine Saint-Denis, Assistance Publique-Hôpitaux de Paris, Bondy, France; University of Paris 13, Sorbonne University, Bobigny, France
| | - C Poncelet
- Department of Obstetrics, Gynecology and Assisted Reproductive Technologies Centers, Hôpitaux Universitaires Paris Seine Saint-Denis, Assistance Publique-Hôpitaux de Paris, Bondy, France; University of Paris 13, Sorbonne University, Bobigny, France
| | - M Grynberg
- Department of Gynecology and Obstetrics, Antoine Béclère Hospital, Clamart, France
| | - L Carbillon
- Department of Obstetrics, Gynecology and Assisted Reproductive Technologies Centers, Hôpitaux Universitaires Paris Seine Saint-Denis, Assistance Publique-Hôpitaux de Paris, Bondy, France; University of Paris 13, Sorbonne University, Bobigny, France
| | - K Nyangoh Timoh
- Department of Gynecology and Obstetrics, CHU de Rennes, Hôpital sud, 16 bd de Bulgarie, 35000 Rennes, France
| | - S Touleimat
- Expert Center in the Diagnosis and Multidisciplinary Management of Endometriosis, Rouen University Hospital, 76031 Rouen, France
| | - Emmanuelle Mathieu D'Argent
- Department of Gynecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Sorbonne University, Paris, France
| | - Aude Jayot
- Department of Gynecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Sorbonne University, Paris, France
| | - Clémentine Owen
- Department of Gynecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Sorbonne University, Paris, France
| | - V Lavoue
- Department of Gynecology and Obstetrics, CHU de Rennes, Hôpital sud, 16 bd de Bulgarie, 35000 Rennes, France
| | - H Roman
- Expert Center in the Diagnosis and Multidisciplinary Management of Endometriosis, Rouen University Hospital, 76031 Rouen, France
| | - E Darai
- Department of Gynecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Sorbonne University, Paris, France; Groupe de Recherche Clinique 6 (GRC6-UPMC): Centre Expert En Endométriose (C3E), France; UMR_S938, Research Center of Saint Antoine, Sorbonne University, Paris 6, France
| | - S Bendifallah
- Department of Gynecology and Obstetrics, Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Sorbonne University, Paris, France; Groupe de Recherche Clinique 6 (GRC6-UPMC): Centre Expert En Endométriose (C3E), France; UMR_S938, Research Center of Saint Antoine, Sorbonne University, Paris 6, France
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23
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Delvare G, Escolà AR, Stojanova AM, Benoit L, Lecomte J, Askew RR. Exploring insect biodiversity: the parasitic Hymenoptera, chiefly Chalcidoidea, associated with seeds of asphodels (Xanthorrhoeaceae), with the description of nine new species belonging to Eurytomidae and Torymidae. Zootaxa 2019; 4597:zootaxa.4597.1.1. [PMID: 31716065 DOI: 10.11646/zootaxa.4597.1.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Indexed: 11/04/2022]
Abstract
An account is given of the communities of Chalcidoidea, mostly based upon species of Bruchophagus Ashmead (Eurytomidae), which feed as larvae in seeds of Asphodelus and Asphodeline (Xanthorrhoeaceae). Eight new species of Eurytomidae, namely B. abscedus Askew sp. n., B. asphodelinae Askew Stojanova sp. n., B. gijswijti Askew Ribes sp. n., B. insulare Delvare sp. n., B. lecomtei Delvare sp. n., B. ribesi Askew sp. n., Eurytoma genale Askew Stojanova sp. n., and Aximopsis balajasi Delvare sp. n., are described together with the new species Idiomacromerus asphodeli Ribes sp. n. (Torymidae). Eurytoma setigera Mayr, 1878 is again synonymized with E. pistaciae Rondani, 1877 syn. rev. Puklina dillerae Doğanlar, 1993 and P. asphodelinae Boyadzhiev, 2003 are synonymized with P. depilata Graham, 1987 syn n. The use, respectively of the mitochondrial genes COI and Cyt B and of the nuclear gene EF1-α, allowed us to discriminate pairs of sibling species in the three genera of Eurytomidae and to circumscribe the limits of the hypervariable Eurytoma asphodeli Hedqvist, 1976. The trophic webs associated with five species/subspecies of asphodels are fully described and illustrated, the distributions of the chalcid wasps involved are figured, and the phenology of the most common species is quoted and figured.
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Affiliation(s)
- G Delvare
- CIRAD, Montpellier SupAgro, INRA, IRD, Univ. Montpellier, Montpellier, France. Campus International de Baillarguet, CS 30016, 34988 Montferrier-sur-Lez Cedex, France..
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24
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Affiliation(s)
- Laure Benoit
- Department of Obstetrics and Gynecology, Poissy-Saint Germain Hospital, Poissy, France
| | - Olivier Mir
- Department of Ambulatory Care, Gustave Roussy Cancer Campus, Villejuif, France
| | - Paul Berveiller
- Department of Obstetrics and Gynecology, Poissy-Saint Germain Hospital, Poissy, France.,Research Unit EA7404 - Gamètes-implantation-Gestation, Université de Versailles Saint-Quentin-en-Yvelines, Montigny-Le-Bretonneux, France
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25
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Sow A, Brévault T, Benoit L, Chapuis MP, Galan M, Coeur d'acier A, Delvare G, Sembène M, Haran J. Deciphering host-parasitoid interactions and parasitism rates of crop pests using DNA metabarcoding. Sci Rep 2019; 9:3646. [PMID: 30842584 PMCID: PMC6403368 DOI: 10.1038/s41598-019-40243-z] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 02/12/2019] [Indexed: 12/26/2022] Open
Abstract
An accurate estimation of parasitism rates and diversity of parasitoids of crop insect pests is a prerequisite for exploring processes leading to efficient natural biocontrol. Traditional methods such as rearing have been often limited by taxonomic identification, insect mortality and intensive work, but the advent of high-throughput sequencing (HTS) techniques, such as DNA metabarcoding, is increasingly seen as a reliable and powerful alternative approach. Little has been done to explore the benefits of such an approach for estimating parasitism rates and parasitoid diversity in an agricultural context. In this study, we compared the composition of parasitoid species and parasitism rates between rearing and DNA metabarcoding of host eggs and larvae of the millet head miner, Heliocheilus albipunctella De Joannis (Lepidoptera, Noctuidae), collected from millet fields in Senegal. We first assessed the detection threshold for the main ten endoparasitoids, by sequencing PCR products obtained from artificial dilution gradients of the parasitoid DNAs in the host moth. We then assessed the potential of DNA metabarcoding for diagnosing parasitism rates in samples collected from the field. Under controlled conditions, our results showed that relatively small quantities of parasitoid DNA (0.07 ng) were successfully detected within an eight-fold larger quantity of host DNA. Parasitoid diversity and parasitism rate estimates were always higher for DNA metabarcoding than for host rearing. Furthermore, metabarcoding detected multi-parasitism, cryptic parasitoid species and differences in parasitism rates between two different sampling sites. Metabarcoding shows promise for gaining a clearer understanding of the importance and complexity of host-parasitoid interactions in agro-ecosystems, with a view to improving pest biocontrol strategies.
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Affiliation(s)
- Ahmadou Sow
- Département de Biologie Animale, FST-UCAD, Dakar, Senegal. .,BIOPASS, CIRAD-IRD-ISRA-UCAD, Dakar, Senegal.
| | - Thierry Brévault
- BIOPASS, CIRAD-IRD-ISRA-UCAD, Dakar, Senegal.,CIRAD, UPR AIDA, F-34398, Montpellier, France.,AIDA, University Montpellier, CIRAD, Montpellier, France
| | - Laure Benoit
- CIRAD, CBGP, Montpellier, France.,CBGP, CIRAD, INRA, IRD, Montpellier SupAgro, University Montpellier, Montpellier, France
| | - Marie-Pierre Chapuis
- CIRAD, CBGP, Montpellier, France.,CBGP, CIRAD, INRA, IRD, Montpellier SupAgro, University Montpellier, Montpellier, France
| | - Maxime Galan
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, University Montpellier, Montpellier, France
| | - Armelle Coeur d'acier
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, University Montpellier, Montpellier, France
| | - Gérard Delvare
- CIRAD, CBGP, Montpellier, France.,CBGP, CIRAD, INRA, IRD, Montpellier SupAgro, University Montpellier, Montpellier, France
| | - Mbacké Sembène
- Département de Biologie Animale, FST-UCAD, Dakar, Senegal.,BIOPASS, CIRAD-IRD-ISRA-UCAD, Dakar, Senegal
| | - Julien Haran
- CIRAD, CBGP, Montpellier, France.,CBGP, CIRAD, INRA, IRD, Montpellier SupAgro, University Montpellier, Montpellier, France
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26
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Winkel T, Aguirre MG, Arizio CM, Aschero CA, Babot MDP, Benoit L, Burgarella C, Costa-Tártara S, Dubois MP, Gay L, Hocsman S, Jullien M, López-Campeny SML, Manifesto MM, Navascués M, Oliszewski N, Pintar E, Zenboudji S, Bertero HD, Joffre R. Discontinuities in quinoa biodiversity in the dry Andes: An 18-century perspective based on allelic genotyping. PLoS One 2018; 13:e0207519. [PMID: 30517116 PMCID: PMC6281180 DOI: 10.1371/journal.pone.0207519] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Accepted: 10/30/2018] [Indexed: 11/18/2022] Open
Abstract
History and environment shape crop biodiversity, particularly in areas with vulnerable human communities and ecosystems. Tracing crop biodiversity over time helps understand how rural societies cope with anthropogenic or climatic changes. Exceptionally well preserved ancient DNA of quinoa (Chenopodium quinoa Willd.) from the cold and arid Andes of Argentina has allowed us to track changes and continuities in quinoa diversity over 18 centuries, by coupling genotyping of 157 ancient and modern seeds by 24 SSR markers with cluster and coalescence analyses. Cluster analyses revealed clear population patterns separating modern and ancient quinoas. Coalescence-based analyses revealed that genetic drift within a single population cannot explain genetic differentiation among ancient and modern quinoas. The hypothesis of a genetic bottleneck related to the Spanish Conquest also does not seem to apply at a local scale. Instead, the most likely scenario is the replacement of preexisting quinoa gene pools with new ones of lower genetic diversity. This process occurred at least twice in the last 18 centuries: first, between the 6th and 12th centuries—a time of agricultural intensification well before the Inka and Spanish conquests—and then between the 13th century and today—a period marked by farming marginalization in the late 19th century likely due to a severe multidecadal drought. While these processes of local gene pool replacement do not imply losses of genetic diversity at the metapopulation scale, they support the view that gene pool replacement linked to social and environmental changes can result from opposite agricultural trajectories.
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Affiliation(s)
- Thierry Winkel
- Centre d'Écologie Fonctionnelle et Évolutive CEFE, Institut de Recherche pour le Développement IRD, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier UPVM3, École Pratique des Hautes Études EPHE, Montpellier, France
- * E-mail:
| | - María Gabriela Aguirre
- Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (FCN e IML, UNT), San Miguel de Tucumán, Argentina
| | | | - Carlos Alberto Aschero
- Instituto Superior de Estudios Sociales, Consejo Nacional de Investigaciones Científicas y Técnicas (ISES, CONICET), San Miguel de Tucumán, Argentina
- Instituto de Arqueología y Museo, Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (IAM, FCN e IML, UNT), San Miguel de Tucumán, Argentina
| | - María del Pilar Babot
- Instituto Superior de Estudios Sociales, Consejo Nacional de Investigaciones Científicas y Técnicas (ISES, CONICET), San Miguel de Tucumán, Argentina
- Instituto de Arqueología y Museo, Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (IAM, FCN e IML, UNT), San Miguel de Tucumán, Argentina
| | - Laure Benoit
- Centre d'Écologie Fonctionnelle et Évolutive CEFE, CNRS, Université de Montpellier, UPVM3, EPHE, IRD, Montpellier, France
| | - Concetta Burgarella
- UMR AGAP Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales, CIRAD, INRA, SupAgro, Montpellier, France
| | - Sabrina Costa-Tártara
- Departamento de Tecnología, Universidad Nacional de Luján, Luján, Buenos Aires, Argentina
| | - Marie-Pierre Dubois
- Centre d'Écologie Fonctionnelle et Évolutive CEFE, CNRS, Université de Montpellier, UPVM3, EPHE, IRD, Montpellier, France
| | - Laurène Gay
- UMR AGAP Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales, CIRAD, INRA, SupAgro, Montpellier, France
| | - Salomón Hocsman
- Instituto Superior de Estudios Sociales, Consejo Nacional de Investigaciones Científicas y Técnicas (ISES, CONICET), San Miguel de Tucumán, Argentina
- Instituto de Arqueología y Museo, Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (IAM, FCN e IML, UNT), San Miguel de Tucumán, Argentina
| | - Margaux Jullien
- UMR AGAP Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales, INRA, CIRAD, SupAgro, Montpellier, France
| | - Sara María Luisa López-Campeny
- Instituto Superior de Estudios Sociales, Consejo Nacional de Investigaciones Científicas y Técnicas (ISES, CONICET), San Miguel de Tucumán, Argentina
- Instituto de Arqueología y Museo, Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (IAM, FCN e IML, UNT), San Miguel de Tucumán, Argentina
| | | | - Miguel Navascués
- Centre de Biologie pour la Gestion des Populations CBGP, INRA, IRD, CIRAD, SupAgro, Montpellier, France
- Institut de Biologie Computationnelle IBC, Montpellier, France
| | - Nurit Oliszewski
- Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (FCN e IML, UNT), San Miguel de Tucumán, Argentina
- Instituto Superior de Estudios Sociales, Consejo Nacional de Investigaciones Científicas y Técnicas (ISES, CONICET), San Miguel de Tucumán, Argentina
| | - Elizabeth Pintar
- Social Sciences Division, Austin Community College, Austin, Texas, United States of Amrica
| | - Saliha Zenboudji
- Centre d'Écologie Fonctionnelle et Évolutive CEFE, CNRS, Université de Montpellier, UPVM3, EPHE, IRD, Montpellier, France
| | - Héctor Daniel Bertero
- Cátedra de Producción Vegetal, Facultad de Agronomía, Universidad de Buenos Aires, and IFEVA-CONICET, Buenos Aires, Argentina
| | - Richard Joffre
- Centre d'Écologie Fonctionnelle et Évolutive CEFE, CNRS, Université de Montpellier, UPVM3, EPHE, IRD, Montpellier, France
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Benoit L, Arfi A, Quilichini O, Ilenko A, Bendifallah S, Darai E, Zilberman S. [How do I do … a lumpectomy with an external oncoplasty]. ACTA ACUST UNITED AC 2018; 46:740-743. [PMID: 30243942 DOI: 10.1016/j.gofs.2018.08.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Indexed: 11/16/2022]
Affiliation(s)
- L Benoit
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France.
| | - A Arfi
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France
| | - O Quilichini
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France
| | - A Ilenko
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France
| | - S Bendifallah
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France; Inserm UMR_S_707, « épidémiologie, information des systèmes, Modeling », université Paris Sorbonne, Paris, France; Groupe de recherche clinique 6 (GRC6-UPMC), centre expert en endométriose (C3E), Paris, France; UMR_S938, université Paris Sorbonne, Paris, France
| | - E Darai
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France; Inserm UMR_S_707, « épidémiologie, information des systèmes, Modeling », université Paris Sorbonne, Paris, France; Groupe de recherche clinique 6 (GRC6-UPMC), centre expert en endométriose (C3E), Paris, France; UMR_S938, université Paris Sorbonne, Paris, France
| | - S Zilberman
- Département de gynécologie and obstétrique, université Paris Sorbonne, hôpital Tenon, Assistance publique des Hôpitaux de Paris (AP-HP), 4, rue de la Chine, 75020 Paris, France
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Hamadeh B, Chalak L, Coppens d’Eeckenbrugge G, Benoit L, Joly HI. Evolution of almond genetic diversity and farmer practices in Lebanon: impacts of the diffusion of a graft-propagated cultivar in a traditional system based on seed-propagation. BMC Plant Biol 2018; 18:155. [PMID: 30081821 PMCID: PMC6080396 DOI: 10.1186/s12870-018-1372-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 07/26/2018] [Indexed: 05/20/2023]
Abstract
BACKGROUND Under cultivation, many outcrossing fruit tree species have switched from sexual reproduction to vegetative propagation. Traditional production systems have persisted, where cultivar propagation is based on a mixed reproductive system. For millenia, almond, Prunus dulcis, has been propagated by seeds. Almond grafting remained of little importance until recently. In Lebanon, both sexual and clonal reproductions are used for almond propagation. We used 15 microsatellite markers to investigate the effect of introducing graft-propagated cultivars and associated practices, on the structure of the genetic diversity among and within the two main Lebanese cultivars. RESULTS As expected, the sexually propagated cultivar Khachabi exhibited more genotypic and genetic diversity than the vegetatively propagated cultivar Halwani. It also exhibited lower differentiation among populations. The distribution of clones showed that propagation modes were not exclusive: farmers have introduced clonal propagation in the seed-propagated cultivar while they have maintained a diversity of genotypes within populations that were mostly graft-propagated. These practices are also important to avoid mate limitations that hamper fruit production in a self-incompatible species. 'Khachabi' is structured into two gene pools separated by the Lebanese mountains. As to 'Halwani', two different gene pools were introduced. The most ancient one shares the same geographic range as 'Khachabi'; longtime coexistence and sexual reproduction have resulted in admixture with 'Khachabi'. In contrast, the more recent introduction of the second gene pool in the Bekaa region followed an evolution towards more extensive clonal propagation of 'Halwani' limiting hybridizations. Furthermore, some pairs of geographically distant 'Halwani' orchards, exhibited low genetic distances, suggesting that a network of exchanges between farmers was effective on a large scale and/or that farmers brought clonal plant material from a common source. CONCLUSIONS Almond diversification in Lebanon is clearly related to the evolution of propagation practices adapted to self-incompatible cultivars. The comparison between both cultivars demonstrated the genetic effects of the introduction of a new cultivar and the associated grafting propagation practices. Our study provided information to develop a strategy for in situ conservation of cultivars and to limit gene flow from introduced material to ancient orchards.
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Affiliation(s)
- Bariaa Hamadeh
- Lebanese Agricultural Research Institute, Fanar, Lebanon
- Université Montpellier 2, UMR CEFE, 34293 Montpellier Cedex, France
- Doctoral School of Sciences and Technologies, Lebanese University, Hadath, Lebanon
- CIRAD, UMR AGAP, Dynamiques de la Diversité, Sociétés et Environnements (DDSE), TA A-61/03 Avenue Agropolis, F-34398 Montpellier Cedex 5, France
- AGAP, Univ Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Lamis Chalak
- Faculty of Agriculture, Lebanese University, Dekwaneh, Lebanon
| | - Geo Coppens d’Eeckenbrugge
- CIRAD, UMR AGAP, Dynamiques de la Diversité, Sociétés et Environnements (DDSE), TA A-61/03 Avenue Agropolis, F-34398 Montpellier Cedex 5, France
| | - Laure Benoit
- CIRAD, UMR CBGP, F-34398 Montpellier, France
- CBGP, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
| | - Hélène I. Joly
- CIRAD, UMR AGAP, Dynamiques de la Diversité, Sociétés et Environnements (DDSE), TA A-61/03 Avenue Agropolis, F-34398 Montpellier Cedex 5, France
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Ladouceur M, Benoit L, Basquin A, Radojevic J, Hauet Q, Hascoet S, Moceri P, Le Gloan L, Amedro P, Lucron H, Richard A, Gouton M, Nizard J. Maternal and fetal outcome in patients with cyanotic congenital heart disease: A multicenter observational study. Archives of Cardiovascular Diseases Supplements 2018. [DOI: 10.1016/j.acvdsp.2017.11.138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Beaulieu M, Benoit L, Abaga S, Kappeler PM, Charpentier MJE. Mind the cell: Seasonal variation in telomere length mirrors changes in leucocyte profile. Mol Ecol 2017; 26:5603-5613. [DOI: 10.1111/mec.14329] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 06/30/2017] [Accepted: 08/07/2017] [Indexed: 12/30/2022]
Affiliation(s)
- Michaël Beaulieu
- Zoological Institute and Museum; University of Greifswald; Greifswald Germany
| | | | | | - Peter M. Kappeler
- Behavioral Ecology and Sociobiology Unit; German Primate Center (DPZ); Göttingen Germany
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Dubois A, Castel G, Murri S, Pulido C, Pons JB, Benoit L, Loiseau A, Lakhdar L, Galan M, Charbonnel N, Marianneau P. Experimental infections of wild bank voles ( Myodes glareolus ) from nephropatia epidemica endemic and non-endemic regions revealed slight differences in Puumala virological course and immunological responses. Virus Res 2017; 235:67-72. [DOI: 10.1016/j.virusres.2017.04.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Revised: 04/04/2017] [Accepted: 04/04/2017] [Indexed: 12/20/2022]
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Rombaut A, Guilhot R, Xuéreb A, Benoit L, Chapuis M, Gibert P, Fellous S. Invasive Drosophila suzukii facilitates Drosophila melanogaster infestation and sour rot outbreaks in the vineyards. R Soc Open Sci 2017; 4:170117. [PMID: 28405407 PMCID: PMC5383864 DOI: 10.1098/rsos.170117] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Accepted: 03/02/2017] [Indexed: 05/12/2023]
Abstract
How do invasive pests affect interactions between members of pre-existing agrosystems? The invasive pest Drosophila suzukii is suspected to be involved in the aetiology of sour rot, a grapevine disease that otherwise develops following Drosophila melanogaster infestation of wounded berries. We combined field observations with laboratory assays to disentangle the relative roles of both Drosophila in disease development. We observed the emergence of numerous D. suzukii, but no D. melanogaster flies, from bunches that started showing mild sour rot symptoms days after field collection. However, bunches that already showed severe rot symptoms in the field mostly contained D. melanogaster. In the laboratory, oviposition by D. suzukii triggered sour rot development. An independent assay showed the disease increased grape attractiveness to ovipositing D. melanogaster females. Our results suggest that in invaded vineyards, D. suzukii facilitates D. melanogaster infestation and, consequently, favours sour rot outbreaks. Rather than competing with close species, the invader subsequently permits their reproduction in otherwise non-accessible resources and may cause more frequent, or more extensive, disease outbreaks.
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Affiliation(s)
- A. Rombaut
- INRA, F-34988 Montferrier-sur-Lez, France
| | - R. Guilhot
- INRA, F-34988 Montferrier-sur-Lez, France
| | - A. Xuéreb
- INRA, F-34988 Montferrier-sur-Lez, France
| | - L. Benoit
- CIRAD, UMR CBGP, F-34988 Montferrier-sur-Lez, France
| | - M. P. Chapuis
- CIRAD, UMR CBGP, F-34988 Montferrier-sur-Lez, France
| | - P. Gibert
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive, F-69100 Villeurbanne, France
| | - S. Fellous
- INRA, F-34988 Montferrier-sur-Lez, France
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Rombaut A, Guilhot R, Xuéreb A, Benoit L, Chapuis MP, Gibert P, Fellous S. Invasive Drosophila suzukii facilitates Drosophila melanogaster infestation and sour rot outbreaks in the vineyards. R Soc Open Sci 2017; 4:170117. [PMID: 28405407 DOI: 10.5061/dryad.2jf75] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Accepted: 03/02/2017] [Indexed: 05/26/2023]
Abstract
How do invasive pests affect interactions between members of pre-existing agrosystems? The invasive pest Drosophila suzukii is suspected to be involved in the aetiology of sour rot, a grapevine disease that otherwise develops following Drosophila melanogaster infestation of wounded berries. We combined field observations with laboratory assays to disentangle the relative roles of both Drosophila in disease development. We observed the emergence of numerous D. suzukii, but no D. melanogaster flies, from bunches that started showing mild sour rot symptoms days after field collection. However, bunches that already showed severe rot symptoms in the field mostly contained D. melanogaster. In the laboratory, oviposition by D. suzukii triggered sour rot development. An independent assay showed the disease increased grape attractiveness to ovipositing D. melanogaster females. Our results suggest that in invaded vineyards, D. suzukii facilitates D. melanogaster infestation and, consequently, favours sour rot outbreaks. Rather than competing with close species, the invader subsequently permits their reproduction in otherwise non-accessible resources and may cause more frequent, or more extensive, disease outbreaks.
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Affiliation(s)
- A Rombaut
- INRA , F-34988 Montferrier-sur-Lez , France
| | - R Guilhot
- INRA , F-34988 Montferrier-sur-Lez , France
| | - A Xuéreb
- INRA , F-34988 Montferrier-sur-Lez , France
| | - L Benoit
- CIRAD, UMR CBGP , F-34988 Montferrier-sur-Lez , France
| | - M P Chapuis
- CIRAD, UMR CBGP , F-34988 Montferrier-sur-Lez , France
| | - P Gibert
- Université de Lyon , Université Claude Bernard Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive, F-69100 Villeurbanne , France
| | - S Fellous
- INRA , F-34988 Montferrier-sur-Lez , France
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Masiri J, Benoit L, Barrios-Lopez B, Thienes C, Meshgi M, Agapov A, Dobritsa A, Nadala C, Samadpour M. Development and validation of a rapid test system for detection of pork meat and collagen residues. Meat Sci 2016; 121:397-402. [DOI: 10.1016/j.meatsci.2016.07.006] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 07/05/2016] [Accepted: 07/10/2016] [Indexed: 11/27/2022]
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Taschen E, Rousset F, Sauve M, Benoit L, Dubois MP, Richard F, Selosse MA. How the truffle got its mate: insights from genetic structure in spontaneous and planted Mediterranean populations ofTuber melanosporum. Mol Ecol 2016; 25:5611-5627. [DOI: 10.1111/mec.13864] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Revised: 09/17/2016] [Accepted: 09/19/2016] [Indexed: 02/01/2023]
Affiliation(s)
- E. Taschen
- CEFE UMR 5175; CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE; 1919 route de Mende Montpellier 34293 France
- Institut de Systématique, Évolution; Biodiversité (ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE); Muséum National d'Histoire Naturelle; Sorbonne Universités; 57 rue Cuvier (CP50) Paris 75005 France
| | - F. Rousset
- Institut des Sciences de l'Evolution; Université de Montpellier; CNRS, IRD, EPHE CC 065; Place Eugène Bataillon Montpellier 34095 France
| | - M. Sauve
- CEFE UMR 5175; CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE; 1919 route de Mende Montpellier 34293 France
| | - L. Benoit
- CEFE UMR 5175; CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE; 1919 route de Mende Montpellier 34293 France
| | - M.-P. Dubois
- CEFE UMR 5175; CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE; 1919 route de Mende Montpellier 34293 France
| | - F. Richard
- CEFE UMR 5175; CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE; 1919 route de Mende Montpellier 34293 France
| | - M.-A. Selosse
- Institut de Systématique, Évolution; Biodiversité (ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE); Muséum National d'Histoire Naturelle; Sorbonne Universités; 57 rue Cuvier (CP50) Paris 75005 France
- Department of Plant Taxonomy and Nature Conservation; University of Gdansk; Wita Stwosza 59 Gdansk 80-308 Poland
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Benoit L. Anticipating the unknown: A mixed method study assessing French psychiatrists opinions towards prognosis in adolescent and young adult psychiatry. Eur Psychiatry 2016. [DOI: 10.1016/j.eurpsy.2016.01.181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
The early treatment of psychiatric disorders has become a central goal of mental health policies worldwide. Yet little is known about the attitudes of psychiatrists regarding prognosis in their daily work. When treating young patients with acute psychotic symptoms, how do psychiatrists manage diagnostic uncertainty? Do they anticipate the risk of schizophrenia or avoid making prognostications? To what extent do they communicate their expectations to patients and their families?MethodsThis is a mixed method study. Firstly, a series of in depth interviews addressed French youth psychiatrists’ opinions towards prognosis. Participants worked in a variety of settings, public institutions, private practice, and student help. Secondly, an online survey investigated French psychiatrists’ opinion toward prognosis. The survey consisted of the presentation of a clinical vignette in which a psychiatrist communicates on prognosis to a young patient with acute psychotic symptoms. The vignette was randomly shown in four versions with different predictions and outcomes. Respondents were then asked questions regarding prognosis communication.ResultsQualitative analysis stresses psychiatrists’ uncertainty in their daily work with teenagers presenting unclear symptoms that might be the sign of a beginning psychotic process or might as well reflect adolescent unease. Psychiatrists are reluctant to commit into prognosticating or using standardized tools. The contradiction between the expectations that psychiatrists be able to predict what will happen to a young patient and their impossibility to do so, raises an ambivalence that is only managed through a deep emotional involvement. The survey received more than 400 answers, and statistical analysis is in progress.Disclosure of interestThe author has not supplied his/her declaration of competing interest.
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Brockmeyer T, Kappeler PM, Willaume E, Benoit L, Mboumba S, Charpentier MJE. Social organization and space use of a wild mandrill (Mandrillus sphinx) group. Am J Primatol 2015; 77:1036-48. [PMID: 26235675 DOI: 10.1002/ajp.22439] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Revised: 05/22/2015] [Accepted: 05/23/2015] [Indexed: 11/09/2022]
Abstract
Mandrills (Mandrillus sphinx) are enigmatic Old World primates whose social organization and ecology remain poorly known. Previous studies indicated, for example, that groups are composed of only adult females and their young or that several units composed of one adult male and several females make up larger permanent social units. Here, we present the first data on group composition and male ranging patterns from the only habituated wild mandrill group and examine how home range size and daily path length varied with environmental and demographic factors over a 15-month period. Our study site is located in southern Gabon where we followed the group on a daily basis, collecting data on presence, ranging, behavior, and parasite load of its individual members. Throughout the study, the group was made up of about 120 individuals, including several non-natal and natal adult and sub-adult males. One-male units were never observed. The mandrills traveled an estimated 0.44-6.50 km/day in a home range area of 866.7 ha. Exploratory analyses revealed that precipitation, the number of adult males present, and the richness of protozoan parasites were all positively correlated with daily path length. These results clarify the social system of mandrills and provide first insights into the factors that shape their ranging patterns.
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Affiliation(s)
- Timo Brockmeyer
- CEFE-CNRS UMR 5175, Montpellier, France.,Behavioral Ecology and Sociobiology Unit, German Primate Center, G, ö, ttingen, Germany
| | - Peter M Kappeler
- Behavioral Ecology and Sociobiology Unit, German Primate Center, G, ö, ttingen, Germany
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Benoit L, Barreteau S, Moro M. « Phobie scolaire chez l’adolescent migrant », la construction identitaire dans une approche transculturelle. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.neurenf.2014.05.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Benoit L, Mboumba S, Willaume E, Kappeler PM, Charpentier MJE. Using next-generation sequencing methods to isolate and characterize 24 simple sequence repeat loci in mandrills (Mandrillus sphinx). CONSERV GENET RESOUR 2014. [DOI: 10.1007/s12686-014-0237-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Blatrix R, Debaud S, Salas-Lopez A, Born C, Benoit L, McKey DB, Attéké C, Djiéto-Lordon C. Repeated evolution of fungal cultivar specificity in independently evolved ant-plant-fungus symbioses. PLoS One 2013; 8:e68101. [PMID: 23935854 PMCID: PMC3723801 DOI: 10.1371/journal.pone.0068101] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2013] [Accepted: 05/24/2013] [Indexed: 11/19/2022] Open
Abstract
Some tropical plant species possess hollow structures (domatia) occupied by ants that protect the plant and in some cases also provide it with nutrients. Most plant-ants tend patches of chaetothyrialean fungi within domatia. In a few systems it has been shown that the ants manure the fungal patches and use them as a food source, indicating agricultural practices. However, the identity of these fungi has been investigated only in a few samples. To examine the specificity and constancy of ant-plant-fungus interactions we characterised the content of fungal patches in an extensive sampling of three ant-plant symbioses (Petalomyrmex phylax/Leonardoxa africana subsp. africana, Aphomomyrmex afer/Leonardoxa africana subsp. letouzeyi and Tetraponera aethiops/Barteria fistulosa) by sequencing the Internal Transcribed Spacers of ribosomal DNA. For each system the content of fungal patches was constant over individuals and populations. Each symbiosis was associated with a specific, dominant, primary fungal taxon, and to a lesser extent, with one or two specific secondary taxa, all of the order Chaetothyriales. A single fungal patch sometimes contained both a primary and a secondary taxon. In one system, two founding queens were found with the primary fungal taxon only, one that was shown in a previous study to be consumed preferentially. Because the different ant-plant symbioses studied have evolved independently, the high specificity and constancy we observed in the composition of the fungal patches have evolved repeatedly. Specificity and constancy also characterize other cases of agriculture by insects.
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Affiliation(s)
- Rumsaïs Blatrix
- Centre d'Ecologie Fonctionnelle et Evolutive, CNRS/CIRAD-Bios/Université Montpellier 2, Montpellier, France.
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Roullier C, Duputié A, Wennekes P, Benoit L, Fernández Bringas VM, Rossel G, Tay D, McKey D, Lebot V. Disentangling the origins of cultivated sweet potato (Ipomoea batatas (L.) Lam.). PLoS One 2013; 8:e62707. [PMID: 23723970 PMCID: PMC3664560 DOI: 10.1371/journal.pone.0062707] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2012] [Accepted: 03/27/2013] [Indexed: 11/18/2022] Open
Abstract
Sweet potato (Ipomoea batatas (L.) Lam., Convolvulaceae) counts among the most widely cultivated staple crops worldwide, yet the origins of its domestication remain unclear. This hexaploid species could have had either an autopolyploid origin, from the diploid I. trifida, or an allopolyploid origin, involving genomes of I. trifida and I. triloba. We generated molecular genetic data for a broad sample of cultivated sweet potatoes and its diploid and polyploid wild relatives, for noncoding chloroplast and nuclear ITS sequences, and nuclear SSRs. Our data did not support an allopolyploid origin for I. batatas, nor any contribution of I. triloba in the genome of domesticated sweet potato. I. trifida and I. batatas are closely related although they do not share haplotypes. Our data support an autopolyploid origin of sweet potato from the ancestor it shares with I. trifida, which might be similar to currently observed tetraploid wild Ipomoea accessions. Two I. batatas chloroplast lineages were identified. They show more divergence with each other than either does with I. trifida. We thus propose that cultivated I. batatas have multiple origins, and evolved from at least two distinct autopolyploidization events in polymorphic wild populations of a single progenitor species. Secondary contact between sweet potatoes domesticated in Central America and in South America, from differentiated wild I. batatas populations, would have led to the introgression of chloroplast haplotypes of each lineage into nuclear backgrounds of the other, and to a reduced divergence between nuclear gene pools as compared with chloroplast haplotypes.
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Affiliation(s)
- Caroline Roullier
- Unité Mixte de Recherche Amélioration et Adaptation des plantes (UMR AGAP), Centre International de Recherches en Agronomie pour le Développement (CIRAD), Montpellier, France
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS), Montpellier, France
- Université Montpellier II, Montpellier, France
- * E-mail:
| | - Anne Duputié
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS), Montpellier, France
| | - Paul Wennekes
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS), Montpellier, France
| | - Laure Benoit
- Unité Mixte de Recherche Amélioration et Adaptation des plantes (UMR AGAP), Centre International de Recherches en Agronomie pour le Développement (CIRAD), Montpellier, France
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS), Montpellier, France
| | | | | | - David Tay
- International Potato Center (CIP), Lima, Peru
| | - Doyle McKey
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS), Montpellier, France
- Université Montpellier II, Montpellier, France
- Institut Universitaire de France (IUF), Paris, France
| | - Vincent Lebot
- Unité Mixte de Recherche Amélioration et Adaptation des plantes (UMR AGAP), Centre International de Recherches en Agronomie pour le Développement (CIRAD), Montpellier, France
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Arias MC, Atteke C, Augusto SC, Bailey J, Bazaga P, Beheregaray LB, Benoit L, Blatrix R, Born C, Brito RM, Chen H, Covarrubias S, Vega C, Djiéto‐Lordon C, Dubois M, Francisco FO, García C, Gonçalves PHP, González C, Gutiérrez‐Rodríguez C, Hammer MP, Herrera CM, Itoh H, Kamimura S, Karaoglu H, Kojima S, Li S, Ling HJ, Matos‐Maraví PF, McKey D, Mezui‐M'Eko J, Ornelas JF, Park RF, Pozo MI, Ramula S, Rigueiro C, Sandoval‐Castillo J, Santiago LR, Seino MM, Song C, Takeshima H, Vasemägi A, Wellings CR, Yan J, Yu‐Zhou D, Zhang C, Zhang T. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 February 2013–31 March 2013. Mol Ecol Resour 2013; 13:760-2. [DOI: 10.1111/1755-0998.12121] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - M. C. Arias
- Departamento de Genética e Biologia Evolutiva Instituto de Biociências, Universidade de São Paulo Rua do Matão, 277 São Paulo SP 05508‐090 Brazil
| | - Christiane Atteke
- Département de Biologie, Faculté des Sciences Université des Sciences et Techniques de Masuku (USTM) B.P. 901 Franceville Gabon
| | - S. C. Augusto
- Instituto de Biologia Universidade Federal de Uberlândia Rua Ceará S/N, Bloco 2D, Campus Umuarama Uberlândia MG 38400‐902 Brazil
| | - J. Bailey
- Faculty of Agriculture and Environment, Plant Breeding Institute The University of Sydney 107 Cobbitty Rd Cobbitty NSW 2570 Australia
- Cooperative Research Centre for National Plant Biosecurity LPO Box 5012 Bruce ACT 2617 Australia
| | - Pilar Bazaga
- Estación Biológica de Doñana CSIC Avda. Américo Vespucio s/n Sevilla 41092 Spain
| | - Luciano B. Beheregaray
- Molecular Ecology Laboratory School of Biological Sciences, Flinders University Adelaide SA 5001 Australia
| | - Laure Benoit
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175 (CNRS, Université Montpellier 2, CIRAD‐Bios) 1919 route de Mende 34293 Montpellier cedex 5 France
| | - Rumsaïs Blatrix
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175 (CNRS, Université Montpellier 2, CIRAD‐Bios) 1919 route de Mende 34293 Montpellier cedex 5 France
| | - Céline Born
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175 (CNRS, Université Montpellier 2, CIRAD‐Bios) 1919 route de Mende 34293 Montpellier cedex 5 France
| | - R. M. Brito
- Instituto de Genética e Bioquímica Universidade Federal de Uberlândia Rua Pará 1720, Bloco 2E, Campus Umuarama Uberlândia MG 38400‐902 Brazil
| | - Hai‐kui Chen
- Department of Life Science Beifang University of Nationalities Yinchuan 730000 China
| | - Sara Covarrubias
- Departamento de Biología Evolutiva Instituto de Ecología A.C., Carretera Antigua a Coatepec 351 El Haya Xalapa Veracruz 91070 Mexico
| | - Clara Vega
- Estación Biológica de Doñana CSIC Avda. Américo Vespucio s/n Sevilla 41092 Spain
| | - Champlain Djiéto‐Lordon
- Laboratory of Zoology, Faculty of Science University of Yaoundé I PO Box 812 Yaoundé Cameroon
| | - Marie‐Pierre Dubois
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175 (CNRS, Université Montpellier 2, CIRAD‐Bios) 1919 route de Mende 34293 Montpellier cedex 5 France
| | - F. O. Francisco
- Departamento de Genética e Biologia Evolutiva Instituto de Biociências, Universidade de São Paulo Rua do Matão, 277 São Paulo SP 05508‐090 Brazil
| | - Cristina García
- Research Center in Biodiversity and Genetic Resources (CIBIO), Campus Agrário de Vairão Rua Padre Armando Quintas Vairão 4485‐661 Portugal
| | - P. H. P. Gonçalves
- Departamento de Genética e Biologia Evolutiva Instituto de Biociências, Universidade de São Paulo Rua do Matão, 277 São Paulo SP 05508‐090 Brazil
| | - Clementina González
- Departamento de Biología Evolutiva Instituto de Ecología A.C., Carretera Antigua a Coatepec 351 El Haya Xalapa Veracruz 91070 Mexico
| | - Carla Gutiérrez‐Rodríguez
- Departamento de Biología Evolutiva Instituto de Ecología A.C., Carretera Antigua a Coatepec 351 El Haya Xalapa Veracruz 91070 Mexico
| | - Michael P. Hammer
- Museum and Art Gallery of the Northern Territory PO Box 4646 Darwin NT 0810 Australia
| | - Carlos M. Herrera
- Estación Biológica de Doñana CSIC Avda. Américo Vespucio s/n Sevilla 41092 Spain
| | - H. Itoh
- Atmosphere and Ocean Research Institute The University Of Tokyo 5‐1‐5, Kashiwanoha Kashiwa Chiba 277‐8564 Japan
| | - S. Kamimura
- National Institute For Land and Infrastructure Management, Ministry Of Land, Infrastructure and Transport 3‐1‐1, Nagase Yokosuka Kanagawa 239‐0826 Japan
| | - H. Karaoglu
- Faculty of Agriculture and Environment, Plant Breeding Institute The University of Sydney 107 Cobbitty Rd Cobbitty NSW 2570 Australia
| | - S. Kojima
- Atmosphere and Ocean Research Institute The University Of Tokyo 5‐1‐5, Kashiwanoha Kashiwa Chiba 277‐8564 Japan
| | - Shou‐Li Li
- Section of Ecology, Department of Biology University of Turku 20014 Turku Finland
| | - Hannah J. Ling
- Molecular Ecology Laboratory School of Biological Sciences, Flinders University Adelaide SA 5001 Australia
| | - Pável F. Matos‐Maraví
- Division of Genetics and Physiology, Department of Biology University of Turku 20014 Turku Finland
- Biology Center AS CR School of Biological Sciences, University of South Bohemia and Institute of Entomology Branisovska 31 37005 Ceske Budejovice Czech Republic
| | - Doyle McKey
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175 (CNRS, Université Montpellier 2, CIRAD‐Bios) 1919 route de Mende 34293 Montpellier cedex 5 France
- Institut Universitaire de France
| | - Judicaël Mezui‐M'Eko
- Département de Biologie, Faculté des Sciences Université des Sciences et Techniques de Masuku (USTM) B.P. 901 Franceville Gabon
| | - Juan Francisco Ornelas
- Departamento de Biología Evolutiva Instituto de Ecología A.C., Carretera Antigua a Coatepec 351 El Haya Xalapa Veracruz 91070 Mexico
| | - R. F. Park
- Faculty of Agriculture and Environment, Plant Breeding Institute The University of Sydney 107 Cobbitty Rd Cobbitty NSW 2570 Australia
| | - María I. Pozo
- Estación Biológica de Doñana CSIC Avda. Américo Vespucio s/n Sevilla 41092 Spain
| | - Satu Ramula
- Section of Ecology, Department of Biology University of Turku 20014 Turku Finland
- Biodiversity Unit Department of Biology Lund University 22362 Lund Sweden
- Aronia Coastal Zone Research Team Åbo Akademi University Raseborgsvägen 9 10600 Ekenäs Finland
| | - Cristina Rigueiro
- Integrative Ecology Group, Estación Biológica de Doñana Consejo Superior de Investigaciones Científicas (EBD‐CSIC) Avenida Americo Vespucio s/n E‐41092 Sevilla Spain
| | - Jonathan Sandoval‐Castillo
- Molecular Ecology Laboratory School of Biological Sciences, Flinders University Adelaide SA 5001 Australia
| | - L. R. Santiago
- Departamento de Genética e Biologia Evolutiva Instituto de Biociências, Universidade de São Paulo Rua do Matão, 277 São Paulo SP 05508‐090 Brazil
| | - Miyuki M. Seino
- Estación Biológica de Doñana CSIC Avda. Américo Vespucio s/n Sevilla 41092 Spain
| | - Chang‐Bing Song
- Department of Life Science Beifang University of Nationalities Yinchuan 730000 China
| | - H. Takeshima
- Atmosphere and Ocean Research Institute The University Of Tokyo 5‐1‐5, Kashiwanoha Kashiwa Chiba 277‐8564 Japan
| | - Anti Vasemägi
- Division of Genetics and Physiology, Department of Biology University of Turku 20014 Turku Finland
- Department of Aquaculture, Institute of Veterinary Medicine and Animal Science Estonian University of Life Sciences 51014 Tartu Estonia
| | - C. R. Wellings
- Faculty of Agriculture and Environment, Plant Breeding Institute The University of Sydney 107 Cobbitty Rd Cobbitty NSW 2570 Australia
| | - Ji Yan
- College of Horticulture and Plant Protection & Institute of Applied Entomology Yangzhou University Yangzhou Jiangsu 225009 China
| | - Du Yu‐Zhou
- College of Horticulture and Plant Protection & Institute of Applied Entomology Yangzhou University Yangzhou Jiangsu 225009 China
| | - Chang‐Rong Zhang
- Department of Lanzhou Military Area Command Institute of Drug and Instruments Control of Joint Logistics Lanzhou 730050 China
| | - Tian‐Yun Zhang
- The First Hospital, The Chinese People's Liberation Army (PLA) Lanzhou 730050 China
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Delplancke M, Alvarez N, Benoit L, Espíndola A, I Joly H, Neuenschwander S, Arrigo N. Evolutionary history of almond tree domestication in the Mediterranean basin. Mol Ecol 2012. [PMID: 23189975 DOI: 10.1111/mec.12129] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Genetic diversity of contemporary domesticated species is shaped by both natural and human-driven processes. However, until now, little is known about how domestication has imprinted the variation of fruit tree species. In this study, we reconstruct the recent evolutionary history of the domesticated almond tree, Prunus dulcis, around the Mediterranean basin, using a combination of nuclear and chloroplast microsatellites [i.e. simple sequence repeat (SSRs)] to investigate patterns of genetic diversity. Whereas conservative chloroplast SSRs show a widespread haplotype and rare locally distributed variants, nuclear SSRs show a pattern of isolation by distance with clines of diversity from the East to the West of the Mediterranean basin, while Bayesian genetic clustering reveals a substantial longitudinal genetic structure. Both kinds of markers thus support a single domestication event, in the eastern side of the Mediterranean basin. In addition, model-based estimation of the timing of genetic divergence among those clusters is estimated sometime during the Holocene, a result that is compatible with human-mediated dispersal of almond tree out of its centre of origin. Still, the detection of region-specific alleles suggests that gene flow from relictual wild preglacial populations (in North Africa) or from wild counterparts (in the Near East) could account for a fraction of the diversity observed.
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Affiliation(s)
- M Delplancke
- Centre d'Ecologie Fonctionnelle et Evolutive, UMR 5175, 1919 Route de Mende, 34293 Montpellier Cedex 5, France.
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Delplancke M, Alvarez N, Espíndola A, Joly H, Benoit L, Brouck E, Arrigo N. Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers. Evol Appl 2011; 5:317-29. [PMID: 25568053 DOI: 10.1111/j.1752-4571.2011.00223.x] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2011] [Accepted: 11/02/2011] [Indexed: 11/30/2022] Open
Abstract
Hybridization has played a central role in the evolutionary history of domesticated plants. Notably, several breeding programs relying on gene introgression from the wild compartment have been performed in fruit tree species within the genus Prunus but few studies investigated spontaneous gene flow among wild and domesticated Prunus species. Consequently, a comprehensive understanding of genetic relationships and levels of gene flow between domesticated and wild Prunus species is needed. Combining nuclear and chloroplastic microsatellites, we investigated the gene flow and hybridization among two key almond tree species, the cultivated Prunus dulcis and one of the most widespread wild relative Prunus orientalis in the Fertile Crescent. We detected high genetic diversity levels in both species along with substantial and symmetric gene flow between the domesticated P. dulcis and the wild P. orientalis. These results were discussed in light of the cultivated species diversity, by outlining the frequent spontaneous genetic contributions of wild species to the domesticated compartment. In addition, crop-to-wild gene flow suggests that ad hoc transgene containment strategies would be required if genetically modified cultivars were introduced in the northwestern Mediterranean.
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Affiliation(s)
- Malou Delplancke
- Université Montpellier 2, Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 Montpellier cedex, France
| | - Nadir Alvarez
- Department of Ecology and Evolution, Faculty of Biology and Medicine, University of Lausanne Lausanne, Switzerland
| | - Anahí Espíndola
- Department of Ecology and Evolution, Faculty of Biology and Medicine, University of Lausanne Lausanne, Switzerland
| | - Hélène Joly
- CIRAD, Centre d'Ecologie Fonctionnelle et Evolutive Montpellier cedex, France
| | - Laure Benoit
- CIRAD, Centre d'Ecologie Fonctionnelle et Evolutive Montpellier cedex, France
| | - Elise Brouck
- Université Montpellier 2, Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 Montpellier cedex, France
| | - Nils Arrigo
- Department of Ecology & Evolutionary Biology, University of Arizona Tucson, AZ, USA
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Charpentier MJE, Fontaine MC, Cherel E, Renoult JP, Jenkins T, Benoit L, Barthès N, Alberts SC, Tung J. Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population. Mol Ecol 2011; 21:715-31. [PMID: 21988698 DOI: 10.1111/j.1365-294x.2011.05302.x] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Behaviour and genetic structure are intimately related: mating patterns and patterns of movement between groups or populations influence the movement of genetic variation across the landscape and from one generation to the next. In hybrid zones, the behaviour of the hybridizing taxa can also impact the incidence and outcome of hybridization events. Hybridization between yellow baboons and anubis baboons has been well documented in the Amboseli basin of Kenya, where more anubis-like individuals tend to experience maturational and reproductive advantages. However, it is unknown whether these advantages are reflected in the genetic structure of populations surrounding this area. Here, we used microsatellite genotype data to evaluate the structure and composition of baboon populations in southern Kenya. Our results indicate that, unlike for mitochondrial DNA, microsatellite-based measures of genetic structure concord with phenotypically based taxonomic distinctions and that the currently active hybrid zone is relatively narrow. Isolation with migration analysis revealed asymmetric gene flow in this region from anubis populations into yellow populations, in support of the anubis-biased phenotypic advantages observed in Amboseli. Populations that are primarily yellow but that receive anubis gene flow exhibit higher levels of genetic diversity than yellow populations far from the introgression front. Our results support previous work that indicates a long history of hybridization and introgression among East African baboons. Specifically, it suggests that anubis baboons are in the process of gradual range expansion into the range of yellow baboons, a pattern potentially explained by behavioural and life history advantages that correlate with anubis ancestry.
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Benoit L, Born C, Vignes H, Chevallier MH, Todou G, Debain C, Joly HI. Polymorphic microsatellite loci from Dacryodes edulis (Burseraceae), a Central African rainforest and fruit-tree species. Am J Bot 2011; 98:e74-e75. [PMID: 21613150 DOI: 10.3732/ajb.1000463] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
PREMISE OF THE STUDY Microsatellite markers were isolated and characterized from Dacryodes edulis (Burseraceae), a tropical rainforests fruit tree of central Africa. METHODS AND RESULTS Using an enrichment protocol, six microsatellites loci were developed from Dacryodes edulis. We investigated polymorphism using 45 trees from three widely separated populations in Cameroon. All loci were polymorphic, with the number of alleles ranging from 2 to 15. Polymorphism was widely variable among loci and expected heterozygosities ranged from 0.06 to 0.84 with a mean value of 0.49. CONCLUSIONS These loci will be useful for the in-depth analysis of population structure and phylogeographic variation throughout the distribution range of Dacryodes edulis and other related taxa, Dacryodes buettneri and D. normandii, in which all loci were also amplified. Furthermore, they will offer the opportunity to study early domestication processes acting on the genetic diversity of Dacryodes edulis.
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Affiliation(s)
- Laure Benoit
- CIRAD-Bios/UMR 5175, CEFE, 1919 route de Mende 34293 Montpellier Cedex 5, France
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Abstract
AIM OF THE STUDY To analyze our experience with biliary injuries during cholecystectomy in order to determine associated risk factors, morbidity, and results after reconstruction. PATIENTS AND METHODS Review of the series of patients referred to our department for biliary injury during cholecystectomy over a 9-year period. Items regarding the type of lesion, risk factors, management, morbidity, and late results were recorded. RESULTS Fifteen patients were referred to our department for bile duct injury during cholecystectomy between 1997 and 2005 (14 by laparoscopy and four by laparotomy; nine women and nine men). The main surgical indication was biliary colic (n=8). Three patients were operated on in an emergency setting (for acute cholecystitis). In nine patients the gallbladder wall was inflammatory. Intraoperative cholangiography was performed in nine patients, but revealed just one injury. Lateral injury to the bile duct was the most frequent type of lesion. In nine patients, the injury was detected intraoperatively and a biliary drainage was left in place; five of them had a synchronic repair and three required later reconstruction. Nine patients had a delayed identification of biliary injury; six of them required a biliodigestive anastomosis. Two patients died, three had several episodes of acute cholangitis after reconstruction and two presented incisional hernia. CONCLUSION An inflammatory environment is the main risk factor for biliary injury during cholecystectomy. Bile duct injury is more frequent with laparoscopic cholecystectomy but can also occur with an open approach. Intraoperative cholangiography does not prevent biliary injuries nor detect them accurately. Biliary drainage can reduce morbidity for intraoperatively detected injuries and may be a sensitive approach for the surgeon with no hepatobiliary experience. Morbidity is increased in patients with delayed identification of the injury.
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Affiliation(s)
- P Ortega-Deballon
- Service de Chirurgie Digestive, Thoracique et Cancérologique, CHU du Bocage - Dijon, France.
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Kadji M, Benoit L, Cheynel N, Ortega Deballon P, Di Giacomo G, Consolo D, Pointaire P, Favre JP, Rat P. [Indirect pancreatico-jejunal anastomosis without transfixion of the pancreas: an experimental study in a porcine model]. J Chir (Paris) 2007; 144:355-356. [PMID: 17925746 DOI: 10.1016/s0021-7697(07)91981-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
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Guardiola E, Chauffert B, Delroeux D, Benoit L, Causeret S, Combe M, Royer B, Plaza J, Heyd B, Pivot X. Intraoperative intraperitoneal (IP) chemotherapy with cisplatin and escalated dose of epinephrine in patient with recurrent peritoneal carcinomatosis of ovarian cancer: A phase I study. J Clin Oncol 2007. [DOI: 10.1200/jco.2007.25.18_suppl.16019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
16019 Background: IP epinephrine (E) has been shown to enhance the accumulation and antitumor activity of IP cisplatin in rats with peritoneal carcinomatosis (Duvillard et al. Int J Cancer, 1999). E induces a vasoconstriction of peritoneal vascular bed which limits platin peritoneal leakage and enhances drug penetration into tumor nodules. Results of a phase I study with the association of IP E and IP cisplatin in patient with refractory peritoneal carcinomatosis has been reported (Molucon-Chabrot et al, Anticancer Drugs, 2006). We conducted a phase I study to evaluate intraoperative IP chemotherapy with the association of cisplatin and escalated dose of E. Methods: 18 patients (pts) with recurrent ovarian cancer were enrolled. The median age was 56 years old (range 42–66). After an optimal cytoreductive surgery, IP chemotherapy was performed during surgery by filling twice the peritoneal cavity with 3 liters of an isotonic saline pre heated at 37°C and 90 mg of cisplatin associated with increasing concentrations of E during 1 hour. Results: E was escalated according to the following dosage: 0, 1, 2, 3 mg/L (3 pts by step). No toxicity was observed during and after intraoperative IP chemotherapy in the first 10 patients. The 2nd patient included in the 3 mg/L level of E experienced a tachycardia ≥ 120/min, ventricular extrasystoles (VES) ≥ 2/min, increase of troponine plasmatic concentration without significant electric sign of cardiac ischemia. The 3rd patient at this level experienced a tachycardia ≥ 120/min with ventricular VES ≥ 2/min and no increase of troponine concentration or electric sign of cardiac ischemia. According to the protocol design, 6 additional patients were included in the lower dose of 2 mg/L of E and no toxicity occurred. One can consider that the recommended dose of E was established. Conclusion: The combination of IP E with IP cisplatin in intraoperative chemotherapy after optimal cytoreductive surgery is feasible. The limiting toxicity was the cardiovascular effect which occurred with 3 mg/L dose of E. A phase II-III study is planned to investigate if IP chemotherapy adds to a second look surgery for the initial treatment of stage III ovarian carcinoma. No significant financial relationships to disclose.
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Affiliation(s)
- E. Guardiola
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - B. Chauffert
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - D. Delroeux
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - L. Benoit
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - S. Causeret
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - M. Combe
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - B. Royer
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - J. Plaza
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - B. Heyd
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
| | - X. Pivot
- CHU Jean Minjoz, Besançon, France; Centre Georges-Francois Leclerc, Dijon, France; CHU Dijon, Dijon, France; Centre Hospitalier Belfort- Montbéliard, Montbéliard, France
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Benoit L, Cheynel N, Arnould L, Gouy S, Fraisse J, Cuisenier J. Localisation intrathoracique des tumeurs desmoïdes : à propos d'un cas familial de tumeurs desmoïdes isolées et revue de la littérature. ACTA ACUST UNITED AC 2006; 131:459-63. [PMID: 16527240 DOI: 10.1016/j.anchir.2006.01.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2004] [Accepted: 01/20/2006] [Indexed: 11/30/2022]
Abstract
We present the case of large desmoid tumor of the anterior chest wall with pleural involvement, which persistently progressed despite hormonotherapy, chemotherapy and surgery. After many years of therapeutic failures, given the tumor size and its hemodynamic repercussions, the patient was presumed to be incurable and only supportive measures were given. One year later, the desmoid tumor had completely disappeared. Even though wide surgical excision is an essential element in the treatment of desmoid tumors, spontaneous regression may occur in very advanced disease.
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Affiliation(s)
- L Benoit
- Service de chirurgie digestive, thoracique et cancérologique, CHU du Bocage, 2, boulevard Mal de Lattre de Tassigny, 21079 Dijon cedex, France.
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