1
|
DeTar RA, Höhner R, Manavski N, Blackholm M, Meurer J, Kunz HH. Loss of SALT OVERLY SENSITIVE 1 prevents virescence in chloroplast K+/H+ EFFLUX ANTIPORTER-deficient mutants. Plant Physiol 2022; 189:1220-1225. [PMID: 35325208 PMCID: PMC9237680 DOI: 10.1093/plphys/kiac142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 03/02/2022] [Indexed: 06/14/2023]
Abstract
Defects in two plastid K+/H+ EFFLUX ANTIPORTERs in Arabidopsis can be relieved by loss of a plasma membrane Na+/H+ exchanger, presumably by altering plant K+ transport.
Collapse
Affiliation(s)
- Rachael Ann DeTar
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, Washington 99164-4236, USA
- LMU Munich, Plant Sciences, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Ricarda Höhner
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, Washington 99164-4236, USA
| | - Nikolay Manavski
- LMU Munich, Plant Sciences, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Marius Blackholm
- LMU Munich, Plant Sciences, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Jörg Meurer
- LMU Munich, Plant Sciences, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | | |
Collapse
|
2
|
McInturf SA, Khan MA, Gokul A, Castro-Guerrero NA, Höhner R, Li J, Marjault HB, Fichman Y, Kunz HH, Goggin FL, Keyster M, Nechushtai R, Mittler R, Mendoza-Cózatl DG. Cadmium interference with iron sensing reveals transcriptional programs sensitive and insensitive to reactive oxygen species. J Exp Bot 2022; 73:324-338. [PMID: 34499172 DOI: 10.1093/jxb/erab393] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
Abstract
Iron (Fe) is an essential micronutrient whose uptake is tightly regulated to prevent either deficiency or toxicity. Cadmium (Cd) is a non-essential element that induces both Fe deficiency and toxicity; however, the mechanisms behind these Fe/Cd-induced responses are still elusive. Here we explored Cd- and Fe-associated responses in wild-type Arabidopsis and in a mutant that overaccumulates Fe (opt3-2). Gene expression profiling revealed a large overlap between transcripts induced by Fe deficiency and Cd exposure. Interestingly, the use of opt3-2 allowed us to identify additional gene clusters originally induced by Cd in the wild type but repressed in the opt3-2 background. Based on the high levels of H2O2 found in opt3-2, we propose a model where reactive oxygen species prevent the induction of genes that are induced in the wild type by either Fe deficiency or Cd. Interestingly, a defined cluster of Fe-responsive genes was found to be insensitive to this negative feedback, suggesting that their induction by Cd is more likely to be the result of an impaired Fe sensing. Overall, our data suggest that Fe deficiency responses are governed by multiple inputs and that a hierarchical regulation of Fe homeostasis prevents the induction of specific networks when Fe and H2O2 levels are elevated.
Collapse
Affiliation(s)
- Samuel A McInturf
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Mather A Khan
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Arun Gokul
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa
| | - Norma A Castro-Guerrero
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Ricarda Höhner
- School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
| | - Jiamei Li
- Department of Entomology and Plant Pathology, 217 Plant Sciences Building, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | | | - Yosef Fichman
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Hans-Henning Kunz
- School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
- Biozentrum der LMU München, Germany
| | - Fiona L Goggin
- Department of Entomology and Plant Pathology, 217 Plant Sciences Building, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | - Marshall Keyster
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa
| | - Rachel Nechushtai
- Institute of Life Science, The Hebrew University of Jerusalem, Jerusalem, 91904Israel
| | - Ron Mittler
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - David G Mendoza-Cózatl
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa
| |
Collapse
|
3
|
DeTar RA, Barahimipour R, Manavski N, Schwenkert S, Höhner R, Bölter B, Inaba T, Meurer J, Zoschke R, Kunz HH. Erratum to: Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression. Plant Cell 2021; 33:3746. [PMID: 34536002 PMCID: PMC8643656 DOI: 10.1093/plcell/koab209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Affiliation(s)
- Rachael Ann DeTar
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
| | - Rouhollah Barahimipour
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Nikolay Manavski
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Serena Schwenkert
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Ricarda Höhner
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
| | - Bettina Bölter
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Takehito Inaba
- Department of Agricultural and Environmental Sciences, Faculty of Agriculture, University of Miyazaki, Miyazaki 889-2192, Japan
| | - Jörg Meurer
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Reimo Zoschke
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Hans-Henning Kunz
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| |
Collapse
|
4
|
DeTar RA, Barahimipour R, Manavski N, Schwenkert S, Höhner R, Bölter B, Inaba T, Meurer J, Zoschke R, Kunz HH. Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression. Plant Cell 2021; 33:2479-2505. [PMID: 34235544 PMCID: PMC8364240 DOI: 10.1093/plcell/koab123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 04/30/2021] [Indexed: 05/08/2023]
Abstract
The inner-envelope K+ EFFLUX ANTIPORTERS (KEA) 1 and 2 are critical for chloroplast development, ion homeostasis, and photosynthesis. However, the mechanisms by which changes in ion flux across the envelope affect organelle biogenesis remained elusive. Chloroplast development requires intricate coordination between the nuclear genome and the plastome. Many mutants compromised in plastid gene expression (PGE) display a virescent phenotype, that is delayed greening. The phenotypic appearance of Arabidopsis thaliana kea1 kea2 double mutants fulfills this criterion, yet a link to PGE has not been explored. Here, we show that a simultaneous loss of KEA1 and KEA2 results in maturation defects of the plastid ribosomal RNAs. This may be caused by secondary structure changes of rRNA transcripts and concomitant reduced binding of RNA-processing proteins, which we documented in the presence of skewed ion homeostasis in kea1 kea2. Consequently, protein synthesis and steady-state levels of plastome-encoded proteins remain low in mutants. Disturbance in PGE and other signs of plastid malfunction activate GENOMES UNCOUPLED 1-dependent retrograde signaling in kea1 kea2, resulting in a dramatic downregulation of GOLDEN2-LIKE transcription factors to halt expression of photosynthesis-associated nuclear-encoded genes (PhANGs). PhANG suppression delays the development of fully photosynthesizing kea1 kea2 chloroplasts, probably to avoid progressing photo-oxidative damage. Overall, our results reveal that KEA1/KEA2 function impacts plastid development via effects on RNA-metabolism and PGE.
Collapse
Affiliation(s)
- Rachael Ann DeTar
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
| | - Rouhollah Barahimipour
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Nikolay Manavski
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Serena Schwenkert
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Ricarda Höhner
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
| | - Bettina Bölter
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Takehito Inaba
- Department of Agricultural and Environmental Sciences, Faculty of Agriculture, University of Miyazaki, Miyazaki 889-2192, Japan
| | - Jörg Meurer
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
| | - Reimo Zoschke
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Hans-Henning Kunz
- Plant Physiology, School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
- Plant Sciences, Department I, LMU Munich, Großhaderner Str. 2-4, 82152 Planegg-Martinsried, Germany
- Author for correspondence:
| |
Collapse
|
5
|
Höhner R, Day PM, Zimmermann SE, Lopez LS, Krämer M, Giavalisco P, Correa Galvis V, Armbruster U, Schöttler MA, Jahns P, Krueger S, Kunz HH. Stromal NADH supplied by PHOSPHOGLYCERATE DEHYDROGENASE3 is crucial for photosynthetic performance. Plant Physiol 2021; 186:142-167. [PMID: 33779763 PMCID: PMC8154072 DOI: 10.1093/plphys/kiaa117] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 12/17/2020] [Indexed: 05/22/2023]
Abstract
During photosynthesis, electrons travel from light-excited chlorophyll molecules along the electron transport chain to the final electron acceptor nicotinamide adenine dinucleotide phosphate (NADP) to form NADPH, which fuels the Calvin-Benson-Bassham cycle (CBBC). To allow photosynthetic reactions to occur flawlessly, a constant resupply of the acceptor NADP is mandatory. Several known stromal mechanisms aid in balancing the redox poise, but none of them utilizes the structurally highly similar coenzyme NAD(H). Using Arabidopsis (Arabidopsis thaliana) as a C3-model, we describe a pathway that employs the stromal enzyme PHOSPHOGLYCERATE DEHYDROGENASE 3 (PGDH3). We showed that PGDH3 exerts high NAD(H)-specificity and is active in photosynthesizing chloroplasts. PGDH3 withdrew its substrate 3-PGA directly from the CBBC. As a result, electrons become diverted from NADPH via the CBBC into the separate NADH redox pool. pgdh3 loss-of-function mutants revealed an overreduced NADP(H) redox pool but a more oxidized plastid NAD(H) pool compared to wild-type plants. As a result, photosystem I acceptor side limitation increased in pgdh3. Furthermore, pgdh3 plants displayed delayed CBBC activation, changes in nonphotochemical quenching, and altered proton motive force partitioning. Our fluctuating light-stress phenotyping data showed progressing photosystem II damage in pgdh3 mutants, emphasizing the significance of PGDH3 for plant performance under natural light environments. In summary, this study reveals an NAD(H)-specific mechanism in the stroma that aids in balancing the chloroplast redox poise. Consequently, the stromal NAD(H) pool may provide a promising target to manipulate plant photosynthesis.
Collapse
Affiliation(s)
- Ricarda Höhner
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Philip M Day
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Sandra E Zimmermann
- Biocenter University of Cologne, Institute for Plant Science, Cologne 50674, Germany
| | - Laura S Lopez
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Moritz Krämer
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | | | - Viviana Correa Galvis
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Potsdam 14476, Germany
| | - Ute Armbruster
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Potsdam 14476, Germany
| | - Mark Aurel Schöttler
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Potsdam 14476, Germany
| | - Peter Jahns
- Plant Biochemistry, Heinrich-Heine-University Düsseldorf, Düsseldorf D-40225, Germany
| | - Stephan Krueger
- Biocenter University of Cologne, Institute for Plant Science, Cologne 50674, Germany
| | - Hans-Henning Kunz
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| |
Collapse
|
6
|
Tietz S, Leuenberger M, Höhner R, Olson AH, Fleming GR, Kirchhoff H. A proteoliposome-based system reveals how lipids control photosynthetic light harvesting. J Biol Chem 2020; 295:1857-1866. [PMID: 31929108 DOI: 10.1074/jbc.ra119.011707] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 01/09/2020] [Indexed: 11/06/2022] Open
Abstract
Integral membrane proteins are exposed to a complex and dynamic lipid environment modulated by nonbilayer lipids that can influence protein functions by lipid-protein interactions. The nonbilayer lipid monogalactosyldiacylglycerol (MGDG) is the most abundant lipid in plant photosynthetic thylakoid membranes, but its impact on the functionality of energy-converting membrane protein complexes is unknown. Here, we optimized a detergent-based reconstitution protocol to develop a proteoliposome technique that incorporates the major light-harvesting complex II (LHCII) into compositionally well-defined large unilamellar lipid bilayer vesicles to study the impact of MGDG on light harvesting by LHCII. Using steady-state fluorescence spectroscopy, CD spectroscopy, and time-correlated single-photon counting, we found that both chlorophyll fluorescence quantum yields and fluorescence lifetimes clearly indicate that the presence of MGDG in lipid bilayers switches LHCII from a light-harvesting to a more energy-quenching mode that dissipates harvested light into heat. It is hypothesized that in the in vitro system developed here, MGDG controls light harvesting of LHCII by modulating the hydrostatic lateral membrane pressure profile in the lipid bilayer sensed by LHCII-bound peripheral pigments.
Collapse
Affiliation(s)
- Stefanie Tietz
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, 99164-6340
| | - Michelle Leuenberger
- Department of Chemistry, University of California, Berkeley, California 94720; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Ricarda Höhner
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, 99164-6340
| | - Alice H Olson
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, 99164-6340
| | - Graham R Fleming
- Department of Chemistry, University of California, Berkeley, California 94720; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Helmut Kirchhoff
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, 99164-6340.
| |
Collapse
|
7
|
Höhner R, Galvis VC, Strand DD, Völkner C, Krämer M, Messer M, Dinc F, Sjuts I, Bölter B, Kramer DM, Armbruster U, Kunz HH. Photosynthesis in Arabidopsis Is Unaffected by the Function of the Vacuolar K + Channel TPK3. Plant Physiol 2019; 180:1322-1335. [PMID: 31053658 PMCID: PMC6752931 DOI: 10.1104/pp.19.00255] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 04/25/2019] [Indexed: 05/21/2023]
Abstract
Photosynthesis is limited by the slow relaxation of nonphotochemical quenching, which primarily dissipates excess absorbed light energy as heat. Because the heat dissipation process is proportional to light-driven thylakoid lumen acidification, manipulating thylakoid ion and proton flux via transport proteins could improve photosynthesis. However, an important aspect of the current understanding of the thylakoid ion transportome is inaccurate. Using fluorescent protein fusions, we show that the Arabidopsis (Arabidopsis thaliana) two-pore K+ channel TPK3, which had been reported to mediate thylakoid K+ flux, localizes to the tonoplast, not the thylakoid. The localization of TPK3 outside of the thylakoids is further supported by the absence of TPK3 in isolated thylakoids as well as the inability of isolated chloroplasts to import TPK3 protein. In line with the subcellular localization of TPK3 in the vacuole, we observed that photosynthesis in the Arabidopsis null mutant tpk3-1, which carries a transfer DNA insertion in the first exon, remains unaffected. To gain a comprehensive understanding of how thylakoid ion flux impacts photosynthetic efficiency under dynamic growth light regimes, we performed long-term photosynthesis imaging of established and newly isolated transthylakoid K+- and Cl--flux mutants. Our results underpin the importance of the thylakoid ion transport proteins potassium cation efflux antiporter KEA3 and voltage-dependent chloride channel VCCN1 and suggest that the activity of yet unknown K+ channel(s), but not TPK3, is critical for optimal photosynthesis in dynamic light environments.
Collapse
Affiliation(s)
- Ricarda Höhner
- Plant Physiology, School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236
| | - Viviana Correa Galvis
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam, Germany
| | - Deserah D Strand
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam, Germany
| | - Carsten Völkner
- Plant Physiology, School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236
| | - Moritz Krämer
- Plant Physiology, School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236
| | - Michaela Messer
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam, Germany
| | - Firdevs Dinc
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam, Germany
| | - Inga Sjuts
- Ludwig Maximilian University Munich, Department I, Plant Biochemistry, 82152 Planegg-Martinsried, Germany
| | - Bettina Bölter
- Ludwig Maximilian University Munich, Department I, Plant Biochemistry, 82152 Planegg-Martinsried, Germany
| | - David M Kramer
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824
- Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
| | - Ute Armbruster
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam, Germany
| | - Hans-Henning Kunz
- Plant Physiology, School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236
| |
Collapse
|
8
|
Höhner R, Marques JV, Ito T, Amakura Y, Budgeon AD, Weitz K, Hixson KK, Davin LB, Kirchhoff H, Lewis NG. Reduced Arogenate Dehydratase Expression: Ramifications for Photosynthesis and Metabolism. Plant Physiol 2018; 177:115-131. [PMID: 29523714 PMCID: PMC5933128 DOI: 10.1104/pp.17.01766] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 02/28/2018] [Indexed: 05/25/2023]
Abstract
Arogenate dehydratase (ADT) catalyzes the final step of phenylalanine (Phe) biosynthesis. Previous work showed that ADT-deficient Arabidopsis (Arabidopsis thaliana) mutants had significantly reduced lignin contents, with stronger reductions in lines that had deficiencies in more ADT isoforms. Here, by analyzing Arabidopsis ADT mutants using our phenomics facility and ultra-performance liquid chromatography-mass spectrometry-based metabolomics, we describe the effects of the modulation of ADT on photosynthetic parameters and secondary metabolism. Our data indicate that a reduced carbon flux into Phe biosynthesis in ADT mutants impairs the consumption of photosynthetically produced ATP, leading to an increased ATP/ADP ratio, the overaccumulation of transitory starch, and lower electron transport rates. The effect on electron transport rates is caused by an increase in proton motive force across the thylakoid membrane that down-regulates photosystem II activity by the high-energy quenching mechanism. Furthermore, quantitation of secondary metabolites in ADT mutants revealed reduced flavonoid, phenylpropanoid, lignan, and glucosinolate contents, including glucosinolates that are not derived from aromatic amino acids, and significantly increased contents of putative galactolipids and apocarotenoids. Additionally, we used real-time atmospheric monitoring mass spectrometry to compare respiration and carbon fixation rates between the wild type and adt3/4/5/6, our most extreme ADT knockout mutant, which revealed no significant difference in both night- and day-adapted plants. Overall, these data reveal the profound effects of altered ADT activity and Phe metabolism on secondary metabolites and photosynthesis with implications for plant improvement.
Collapse
Affiliation(s)
- Ricarda Höhner
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Joaquim V Marques
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Tetsuro Ito
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Yoshiaki Amakura
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Alan D Budgeon
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Karl Weitz
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352
| | - Kim K Hixson
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352
| | - Laurence B Davin
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Helmut Kirchhoff
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| | - Norman G Lewis
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
| |
Collapse
|
9
|
Höhner R, Aboukila A, Kunz HH, Venema K. Proton Gradients and Proton-Dependent Transport Processes in the Chloroplast. Front Plant Sci 2016; 7:218. [PMID: 26973667 PMCID: PMC4770017 DOI: 10.3389/fpls.2016.00218] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2015] [Accepted: 02/08/2016] [Indexed: 05/04/2023]
Abstract
Proton gradients are fundamental to chloroplast function. Across thylakoid membranes, the light induced -proton gradient is essential for ATP synthesis. As a result of proton pumping into the thylakoid lumen, an alkaline stromal pH develops, which is required for full activation of pH-dependent Calvin Benson cycle enzymes. This implies that a pH gradient between the cytosol (pH 7) and the stroma (pH 8) is established upon illumination. To maintain this pH gradient chloroplasts actively extrude protons. More than 30 years ago it was already established that these proton fluxes are electrically counterbalanced by Mg(2+), K(+), or Cl(-) fluxes, but only recently the first transport systems that regulate the pH gradient were identified. Notably several (Na(+),K(+))/H(+) antiporter systems where identified, that play a role in pH gradient regulation, ion homeostasis, osmoregulation, or coupling of secondary active transport. The established pH gradients are important to drive uptake of essential ions and solutes, but not many transporters involved have been identified to date. In this mini review we summarize the current status in the field and the open questions that need to be addressed in order to understand how pH gradients are maintained, how this is interconnected with other transport processes and what this means for chloroplast function.
Collapse
Affiliation(s)
- Ricarda Höhner
- Plant Physiology, School of Biological Sciences, Washington State University, PullmanWA, USA
| | - Ali Aboukila
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estacion Experimental del Zaidín, Consejo Superior de Investigaciones CientíficasGranada, Spain
| | - Hans-Henning Kunz
- Plant Physiology, School of Biological Sciences, Washington State University, PullmanWA, USA
- *Correspondence: Hans-Henning Kunz, Kees Venema,
| | - Kees Venema
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estacion Experimental del Zaidín, Consejo Superior de Investigaciones CientíficasGranada, Spain
- *Correspondence: Hans-Henning Kunz, Kees Venema,
| |
Collapse
|
10
|
Plancke C, Vigeolas H, Höhner R, Roberty S, Emonds-Alt B, Larosa V, Willamme R, Duby F, Onga Dhali D, Thonart P, Hiligsmann S, Franck F, Eppe G, Cardol P, Hippler M, Remacle C. Lack of isocitrate lyase in Chlamydomonas leads to changes in carbon metabolism and in the response to oxidative stress under mixotrophic growth. Plant J 2014; 77:404-17. [PMID: 24286363 DOI: 10.1111/tpj.12392] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2013] [Revised: 10/30/2013] [Accepted: 11/21/2013] [Indexed: 05/10/2023]
Abstract
Isocitrate lyase is a key enzyme of the glyoxylate cycle. This cycle plays an essential role in cell growth on acetate, and is important for gluconeogenesis as it bypasses the two oxidative steps of the tricarboxylic acid (TCA) cycle in which CO₂ is evolved. In this paper, a null icl mutant of the green microalga Chlamydomonas reinhardtii is described. Our data show that isocitrate lyase is required for growth in darkness on acetate (heterotrophic conditions), as well as for efficient growth in the light when acetate is supplied (mixotrophic conditions). Under these latter conditions, reduced acetate assimilation and concomitant reduced respiration occur, and biomass composition analysis reveals an increase in total fatty acid content, including neutral lipids and free fatty acids. Quantitative proteomic analysis by ¹⁴N/¹⁵N labelling was performed, and more than 1600 proteins were identified. These analyses reveal a strong decrease in the amounts of enzymes of the glyoxylate cycle and gluconeogenesis in parallel with a shift of the TCA cycle towards amino acid synthesis, accompanied by an increase in free amino acids. The decrease of the glyoxylate cycle and gluconeogenesis, as well as the decrease in enzymes involved in β-oxidation of fatty acids in the icl mutant are probably major factors that contribute to remodelling of lipids in the icl mutant. These modifications are probably responsible for the elevation of the response to oxidative stress, with significantly augmented levels and activities of superoxide dismutase and ascorbate peroxidase, and increased resistance to paraquat.
Collapse
Affiliation(s)
- Charlotte Plancke
- Genetics of Microorganisms, Institute of Botany, B22, University of Liege, 4000, Liege, Belgium
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
11
|
Höhner R, Barth J, Magneschi L, Jaeger D, Niehues A, Bald T, Grossman A, Fufezan C, Hippler M. The metabolic status drives acclimation of iron deficiency responses in Chlamydomonas reinhardtii as revealed by proteomics based hierarchical clustering and reverse genetics. Mol Cell Proteomics 2013; 12:2774-90. [PMID: 23820728 PMCID: PMC3790290 DOI: 10.1074/mcp.m113.029991] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2013] [Revised: 06/04/2013] [Indexed: 11/06/2022] Open
Abstract
Iron is a crucial cofactor in numerous redox-active proteins operating in bioenergetic pathways including respiration and photosynthesis. Cellular iron management is essential to sustain sufficient energy production and minimize oxidative stress. To produce energy for cell growth, the green alga Chlamydomonas reinhardtii possesses the metabolic flexibility to use light and/or carbon sources such as acetate. To investigate the interplay between the iron-deficiency response and growth requirements under distinct trophic conditions, we took a quantitative proteomics approach coupled to innovative hierarchical clustering using different "distance-linkage combinations" and random noise injection. Protein co-expression analyses of the combined data sets revealed insights into cellular responses governing acclimation to iron deprivation and regulation associated with photosynthesis dependent growth. Photoautotrophic growth requirements as well as the iron deficiency induced specific metabolic enzymes and stress related proteins, and yet differences in the set of induced enzymes, proteases, and redox-related polypeptides were evident, implying the establishment of distinct response networks under the different conditions. Moreover, our data clearly support the notion that the iron deficiency response includes a hierarchy for iron allocation within organelles in C. reinhardtii. Importantly, deletion of a bifunctional alcohol and acetaldehyde dehydrogenase (ADH1), which is induced under low iron based on the proteomic data, attenuates the remodeling of the photosynthetic machinery in response to iron deficiency, and at the same time stimulates expression of stress-related proteins such as NDA2, LHCSR3, and PGRL1. This finding provides evidence that the coordinated regulation of bioenergetics pathways and iron deficiency response is sensitive to the cellular and chloroplast metabolic and/or redox status, consistent with systems approach data.
Collapse
Affiliation(s)
- Ricarda Höhner
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Johannes Barth
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Leonardo Magneschi
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Daniel Jaeger
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Anna Niehues
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Till Bald
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Arthur Grossman
- §Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305
| | - Christian Fufezan
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| | - Michael Hippler
- From the ‡Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, Münster 48143, Germany
| |
Collapse
|
12
|
Specht M, Stanke M, Terashima M, Naumann-Busch B, Janssen I, Höhner R, Hom EFY, Liang C, Hippler M. Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome. Proteomics 2011; 11:1814-23. [PMID: 21432999 DOI: 10.1002/pmic.201000621] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Revised: 01/31/2011] [Accepted: 02/11/2011] [Indexed: 12/24/2022]
Abstract
The use and development of post-genomic tools naturally depends on large-scale genome sequencing projects. The usefulness of post-genomic applications is dependent on the accuracy of genome annotations, for which the correct identification of intron-exon borders in complex genomes of eukaryotic organisms is often an error-prone task. Although automated algorithms for predicting intron-exon structures are available, supporting exon evidence is necessary to achieve comprehensive genome annotation. Besides cDNA and EST support, peptides identified via MS/MS can be used as extrinsic evidence in a proteogenomic approach. We describe an improved version of the Genomic Peptide Finder (GPF), which aligns de novo predicted amino acid sequences to the genomic DNA sequence of an organism while correcting for peptide sequencing errors and accounting for the possibility of splicing. We have coupled GPF and the gene finding program AUGUSTUS in a way that provides automatic structural annotations of the Chlamydomonas reinhardtii genome, using highly unbiased GPF evidence. A comparison of the AUGUSTUS gene set incorporating GPF evidence to the standard JGI FM4 (Filtered Models 4) gene set reveals 932 GPF peptides that are not contained in the Filtered Models 4 gene set. Furthermore, the GPF evidence improved the AUGUSTUS gene models by altering 65 gene models and adding three previously unidentified genes.
Collapse
Affiliation(s)
- Michael Specht
- Institute of Plant Biology and Biotechnology, University of Münster, Münster, Germany
| | | | | | | | | | | | | | | | | |
Collapse
|