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Prochera A, Muppirala AN, Kuziel GA, Soualhi S, Shepherd A, Sun L, Issac B, Rosenberg HJ, Karim F, Perez K, Smith KH, Archibald TH, Rakoff-Nahoum S, Hagen SJ, Rao M. Enteric glia regulate Paneth cell secretion and intestinal microbial ecology. bioRxiv 2024:2024.04.15.589545. [PMID: 38659931 PMCID: PMC11042301 DOI: 10.1101/2024.04.15.589545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Glial cells of the enteric nervous system (ENS) interact closely with the intestinal epithelium and secrete signals that influence epithelial cell proliferation and barrier formation in vitro. Whether these interactions are important in vivo, however, is unclear because previous studies reached conflicting conclusions [1]. To better define the roles of enteric glia in steady state regulation of the intestinal epithelium, we characterized the glia in closest proximity to epithelial cells and found that the majority express PLP1 in both mice and humans. To test their functions using an unbiased approach, we genetically depleted PLP1+ cells in mice and transcriptionally profiled the small and large intestines. Surprisingly, glial loss had minimal effects on transcriptional programs and the few identified changes varied along the gastrointestinal tract. In the ileum, where enteric glia had been considered most essential for epithelial integrity, glial depletion did not drastically alter epithelial gene expression but caused a modest enrichment in signatures of Paneth cells, a secretory cell type important for innate immunity. In the absence of PLP1+ glia, Paneth cell number was intact, but a subset appeared abnormal with irregular and heterogenous cytoplasmic granules, suggesting a secretory deficit. Consistent with this possibility, ileal explants from glial-depleted mice secreted less functional lysozyme than controls with corresponding effects on fecal microbial composition. Collectively, these data suggest that enteric glia do not exert broad effects on the intestinal epithelium but have an essential role in regulating Paneth cell function and gut microbial ecology.
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Affiliation(s)
- Aleksandra Prochera
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
| | - Anoohya N Muppirala
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
| | - Gavin A Kuziel
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
- Division of Infectious Diseases, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
- Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA
| | - Salima Soualhi
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
| | - Amy Shepherd
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
| | - Liang Sun
- Research Computing, Department of Information Technology, Boston Children's Hospital, 300 Longwood Ave, Boston, MA 02115, USA
| | - Biju Issac
- Research Computing, Department of Information Technology, Boston Children's Hospital, 300 Longwood Ave, Boston, MA 02115, USA
| | - Harry J Rosenberg
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
- Department of Pathology, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Farah Karim
- Institute of Human Nutrition, Columbia University Irving Medical Center, New York, NY, USA
| | - Kristina Perez
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
| | - Kyle H Smith
- Department of Surgery, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Tonora H Archibald
- Department of Pathology, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Seth Rakoff-Nahoum
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
- Division of Infectious Diseases, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
- Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA
| | - Susan J Hagen
- Department of Surgery, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Meenakshi Rao
- Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave, Boston, MA 02115, USA
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2
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Coutry N, Nguyen J, Soualhi S, Gerbe F, Meslier V, Dardalhon V, Almeida M, Quinquis B, Thirion F, Herbert F, Gasmi I, Lamrani A, Giordano A, Cesses P, Garnier L, Thirard S, Greuet D, Cazevieille C, Bernex F, Bressuire C, Winton D, Matsumoto I, Blottière HM, Taylor N, Jay P. Cross talk between Paneth and tuft cells drives dysbiosis and inflammation in the gut mucosa. Proc Natl Acad Sci U S A 2023; 120:e2219431120. [PMID: 37307458 DOI: 10.1073/pnas.2219431120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 05/01/2023] [Indexed: 06/14/2023] Open
Abstract
Gut microbiota imbalance (dysbiosis) is increasingly associated with pathological conditions, both within and outside the gastrointestinal tract. Intestinal Paneth cells are considered to be guardians of the gut microbiota, but the events linking Paneth cell dysfunction with dysbiosis remain unclear. We report a three-step mechanism for dysbiosis initiation. Initial alterations in Paneth cells, as frequently observed in obese and inflammatorybowel diseases patients, cause a mild remodeling of microbiota, with amplification of succinate-producing species. SucnR1-dependent activation of epithelial tuft cells triggers a type 2 immune response that, in turn, aggravates the Paneth cell defaults, promoting dysbiosis and chronic inflammation. We thus reveal a function of tuft cells in promoting dysbiosis following Paneth cell deficiency and an unappreciated essential role of Paneth cells in maintaining a balanced microbiota to prevent inappropriate activation of tuft cells and deleterious dysbiosis. This succinate-tuft cell inflammation circuit may also contribute to the chronic dysbiosis observed in patients.
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Affiliation(s)
- Nathalie Coutry
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Julie Nguyen
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Salima Soualhi
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - François Gerbe
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Victoria Meslier
- Paris-Saclay University, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France
| | - Valérie Dardalhon
- Institut de Génétique Moléculaire de Montpellier, University of Montpellier, CNRS, 34000 Montpellier, France
| | - Mathieu Almeida
- Paris-Saclay University, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France
| | - Benoit Quinquis
- Paris-Saclay University, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France
| | - Florence Thirion
- Paris-Saclay University, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France
| | - Fabien Herbert
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Imène Gasmi
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Ali Lamrani
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Alicia Giordano
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Pierre Cesses
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Laure Garnier
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Steeve Thirard
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Denis Greuet
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
| | - Chantal Cazevieille
- Institut des Neurosciences de Montpellier, University of Montpellier, 34000 Montpellier, France
| | - Florence Bernex
- Réseau d'Histologie Expérimentale de Montpellier, University of Montpellier, BioCampus, CNRS, INSERM, 34000 Montpellier, France
| | - Christelle Bressuire
- Paris-Saclay University, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France
- Paris-Saclay University, INRAE, AgroParisTech, Micalis Institute 78350, Jouy-en-Josas, France
| | - Douglas Winton
- Cancer Research-UK Cambridge Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, United Kingdom
| | | | - Hervé M Blottière
- Paris-Saclay University, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), MetaGenoPolis, 78350, Jouy-en-Josas, France
- Nantes Université, INRAE, UR1280, PhAN, F-44000, Nantes, France
| | - Naomi Taylor
- Institut de Génétique Moléculaire de Montpellier, University of Montpellier, CNRS, 34000 Montpellier, France
- Pediatric Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20814
| | - Philippe Jay
- Institute of Functional Genomics, University of Montpellier, CNRS, Inserm, Equipe Labellisée Ligue contre le Cancer, 34000 Montpellier, France
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3
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Lai NY, Musser MA, Pinho-Ribeiro FA, Baral P, Jacobson A, Ma P, Potts DE, Chen Z, Paik D, Soualhi S, Yan Y, Misra A, Goldstein K, Lagomarsino VN, Nordstrom A, Sivanathan KN, Wallrapp A, Kuchroo VK, Nowarski R, Starnbach MN, Shi H, Surana NK, An D, Wu C, Huh JR, Rao M, Chiu IM. Gut-Innervating Nociceptor Neurons Regulate Peyer's Patch Microfold Cells and SFB Levels to Mediate Salmonella Host Defense. Cell 2020; 180:33-49.e22. [PMID: 31813624 PMCID: PMC6954329 DOI: 10.1016/j.cell.2019.11.014] [Citation(s) in RCA: 182] [Impact Index Per Article: 45.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2019] [Revised: 09/08/2019] [Accepted: 11/12/2019] [Indexed: 12/30/2022]
Abstract
Gut-innervating nociceptor sensory neurons respond to noxious stimuli by initiating protective responses including pain and inflammation; however, their role in enteric infections is unclear. Here, we find that nociceptor neurons critically mediate host defense against the bacterial pathogen Salmonella enterica serovar Typhimurium (STm). Dorsal root ganglia nociceptors protect against STm colonization, invasion, and dissemination from the gut. Nociceptors regulate the density of microfold (M) cells in ileum Peyer's patch (PP) follicle-associated epithelia (FAE) to limit entry points for STm invasion. Downstream of M cells, nociceptors maintain levels of segmentous filamentous bacteria (SFB), a gut microbe residing on ileum villi and PP FAE that mediates resistance to STm infection. TRPV1+ nociceptors directly respond to STm by releasing calcitonin gene-related peptide (CGRP), a neuropeptide that modulates M cells and SFB levels to protect against Salmonella infection. These findings reveal a major role for nociceptor neurons in sensing and defending against enteric pathogens.
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Affiliation(s)
- Nicole Y Lai
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Melissa A Musser
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA; Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA
| | | | - Pankaj Baral
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Amanda Jacobson
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Pingchuan Ma
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - David E Potts
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Zuojia Chen
- Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA; Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
| | - Donggi Paik
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Salima Soualhi
- Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA
| | - Yiqing Yan
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Aditya Misra
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Kaitlin Goldstein
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | | | - Anja Nordstrom
- Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
| | - Kisha N Sivanathan
- Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA
| | - Antonia Wallrapp
- Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA
| | - Vijay K Kuchroo
- Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA
| | - Roni Nowarski
- Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA
| | | | - Hailian Shi
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA; Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Neeraj K Surana
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA; Department of Pediatrics, Duke University, Durham, NC 27710, USA; Department of Molecular Genetics and Microbiology, Duke University, Durham, NC 27710, USA; Department of Immunology, Duke University, Durham, NC 27710, USA
| | - Dingding An
- Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA
| | - Chuan Wu
- Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA; Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
| | - Jun R Huh
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| | - Meenakshi Rao
- Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA
| | - Isaac M Chiu
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA.
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Ladinsky MS, Araujo LP, Zhang X, Veltri J, Galan-Diez M, Soualhi S, Lee C, Irie K, Pinker EY, Narushima S, Bandyopadhyay S, Nagayama M, Elhenawy W, Coombes BK, Ferraris RP, Honda K, Iliev ID, Gao N, Bjorkman PJ, Ivanov II. Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis. Science 2019; 363:eaat4042. [PMID: 30846568 PMCID: PMC6708280 DOI: 10.1126/science.aat4042] [Citation(s) in RCA: 105] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 10/11/2018] [Accepted: 01/28/2019] [Indexed: 12/11/2022]
Abstract
Commensal bacteria influence host physiology, without invading host tissues. We show that proteins from segmented filamentous bacteria (SFB) are transferred into intestinal epithelial cells (IECs) through adhesion-directed endocytosis that is distinct from the clathrin-dependent endocytosis of invasive pathogens. This process transfers microbial cell wall-associated proteins, including an antigen that stimulates mucosal T helper 17 (TH17) cell differentiation, into the cytosol of IECs in a cell division control protein 42 homolog (CDC42)-dependent manner. Removal of CDC42 activity in vivo led to disruption of endocytosis induced by SFB and decreased epithelial antigen acquisition, with consequent loss of mucosal TH17 cells. Our findings demonstrate direct communication between a resident gut microbe and the host and show that under physiological conditions, IECs acquire antigens from commensal bacteria for generation of T cell responses to the resident microbiota.
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Affiliation(s)
- Mark S Ladinsky
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Leandro P Araujo
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA
| | - Xiao Zhang
- Department of Biological Sciences, Rutgers University, Newark, NJ 07102, USA
| | - John Veltri
- Department of Pharmacology, Physiology and Neurosciences, Rutgers University, Newark, NJ 07103, USA
| | - Marta Galan-Diez
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA
| | - Salima Soualhi
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA
| | - Carolyn Lee
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA
| | - Koichiro Irie
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA
- Department of Preventive Dentistry, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama 700-8558, Japan
| | - Elisha Y Pinker
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA
| | - Seiko Narushima
- RIKEN Center for Integrative Medical Sciences, Kanagawa 230-0045, Japan
| | | | - Manabu Nagayama
- RIKEN Center for Integrative Medical Sciences, Kanagawa 230-0045, Japan
- Department of Medicine, Division of Gastroenterology, Jichi Medical University, Tochigi 329-0498, Japan
| | - Wael Elhenawy
- Department of Biochemistry & Biomedical Sciences, Michael G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada
| | - Brian K Coombes
- Department of Biochemistry & Biomedical Sciences, Michael G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada
| | - Ronaldo P Ferraris
- Department of Pharmacology, Physiology and Neurosciences, Rutgers University, Newark, NJ 07103, USA
| | - Kenya Honda
- RIKEN Center for Integrative Medical Sciences, Kanagawa 230-0045, Japan
- Department of Microbiology and Immunology, Keio University School of Medicine, Tokyo 160-8582, Japan
| | - Iliyan D Iliev
- Department of Microbiology and Immunology and The Jill Roberts Institute for Research in Inflammatory Bowel Disease, Weill Cornell Medicine, New York, NY 10065, USA
| | - Nan Gao
- Department of Biological Sciences, Rutgers University, Newark, NJ 07102, USA
| | - Pamela J Bjorkman
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
| | - Ivaylo I Ivanov
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
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Id Ahmed I, Jahnaoui N, Hammi S, Marc K, Soualhi S, Zahraoui R, Benamor J, Bourkadi J, Iraqi G. Accoutumance à la rifampicine : à propos de six cas. Rev Mal Respir 2012. [DOI: 10.1016/j.rmr.2011.10.402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Talhaoui M, Herrag M, Tellou S, Marc K, Soualhi S, Bounakba R, Benamor J, Bourkadi J, Iraqui G. 192 Le lymphome hodgkinien primitif du poumon. Rev Mal Respir 2004. [DOI: 10.1016/s0761-8425(04)71818-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Khallafi S, Soualhi S. 131 Une cause inhabituelle de parasitose pulmonaire. Rev Mal Respir 2004. [DOI: 10.1016/s0761-8425(04)71757-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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8
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Khallafi S, Soualhi S. 269 La tuberculose pulmonaire chronique : à propos de 25 cas. Rev Mal Respir 2004. [DOI: 10.1016/s0761-8425(04)71895-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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