1
|
Wang Z, Othman SN, Qiu Z, Lu Y, Prasad VK, Dong Y, Lu CH, Borzée A. An Isolated and Deeply Divergent Hynobius Species from Fujian, China. Animals (Basel) 2023; 13:ani13101661. [PMID: 37238092 DOI: 10.3390/ani13101661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 04/27/2023] [Accepted: 05/01/2023] [Indexed: 05/28/2023] Open
Abstract
It is important to describe lineages before they go extinct, as we can only protect what we know. This is especially important in the case of microendemic species likely to be relict populations, such as Hynobius salamanders in southern China. Here, we unexpectedly sampled Hynobius individuals in Fujian province, China, and then worked on determining their taxonomic status. We describe Hynobius bambusicolus sp. nov. based on molecular and morphological data. The lineage is deeply divergent and clusters with the other southern Chinese Hynobius species based on the concatenated mtDNA gene fragments (>1500 bp), being the sister group to H. amjiensis based on the COI gene fragment, despite their geographic distance. In terms of morphology, the species can be identified through discrete characters enabling identification in the field by eye, an unusual convenience in Hynobius species. In addition, we noted some interesting life history traits in the species, such as vocalization and cannibalism. The species is likely to be incredibly rare, over a massively restricted distribution, fitting the definition of Critically Endangered following several lines of criteria and categories of the IUCN Red List of Threatened Species.
Collapse
Affiliation(s)
- Zhenqi Wang
- The Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Siti N Othman
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Zhixin Qiu
- The Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Yiqiu Lu
- The Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Vishal Kumar Prasad
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Yuran Dong
- The Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Chang-Hu Lu
- The Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Amaël Borzée
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
- Jiangsu Agricultural Biodiversity Cultivation and Utilization Research Center, Nanjing 210014, China
| |
Collapse
|
2
|
Othman SN, Shin Y, Kim HT, Chuang MF, Bae Y, Hoti J, Zhang Y, Jang Y, Borzée A. Evaluating the efficiency of popular species identification analytical methods, and integrative workflow using morphometry and barcoding bioinformatics for taxonomy and origin of traded cryptic brown frogs. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022] Open
|
3
|
Messenger KR, Othman SN, Chuang MF, Yang Y, Borzée A. Description of a new Kurixalus species (Rhacophoridae, Anura) and a northwards range extension of the genus. Zookeys 2022; 1108:15-49. [PMID: 36760702 PMCID: PMC9848858 DOI: 10.3897/zookeys.1108.81725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Accepted: 05/15/2022] [Indexed: 11/12/2022] Open
Abstract
Knowledge of biodiversity before species become extinct is paramount to conservation, especially when the relevant species are far from their expected distribution and, thus, likely overlooked. Here, we describe a new Kurixalus species corresponding to a range extension of Kurixalus on the Asian mainland, with the closest population in Taiwan. The species diverged from its closest relative during the Late Pliocene to Pleistocene, ca. 3.06 Mya (HPD 95%: 5.82-0.01), based on calibrations with a relaxed clock species tree of unlinked mtDNA 12S rRNA and nuclear DNA TYR. The status of the newly-described species is also supported by a divergence in call properties and morphometrics. We named the species described here as Kurixalusinexpectatus sp. nov. due to the nature of the discovery, as well as the adjunct distribution of the species relative to its closest congeners. The species was found in Zhejiang Province and it represents a range extension of 663 km for the Kurixalus genus.
Collapse
Affiliation(s)
- Kevin R. Messenger
- Herpetology and Applied Conservation Lab, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing, Jiangsu 210037 China
| | - Siti N. Othman
- Herpetology and Applied Conservation Lab, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing, Jiangsu 210037 China
| | - Ming-Feng Chuang
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing, Jiangsu 210037 China
| | - Yi Yang
- Herpetology and Applied Conservation Lab, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing, Jiangsu 210037 China
| | - Amaël Borzée
- Herpetology and Applied Conservation Lab, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing, Jiangsu 210037 China
| |
Collapse
|
4
|
Othman SN, Litvinchuk SN, Maslova I, Dahn H, Messenger KR, Andersen D, Jowers MJ, Kojima Y, Skorinov DV, Yasumiba K, Chuang MF, Chen YH, Bae Y, Hoti J, Jang Y, Borzee A. From Gondwana to the Yellow Sea, evolutionary diversifications of true toads Bufo sp. in the Eastern Palearctic and a revisit of species boundaries for Asian lineages. eLife 2022; 11:e70494. [PMID: 35089130 PMCID: PMC8920510 DOI: 10.7554/elife.70494] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 01/27/2022] [Indexed: 11/13/2022] Open
Abstract
Taxa with vast distribution ranges often display unresolved phylogeographic structures and unclear taxonomic boundaries resulting in hidden diversity. This hypothesis-driven study reveals the evolutionary history of Bufonidae, covering the phylogeographic patterns found in Holarctic bufonids from the West Gondwana to the phylogenetic taxonomy of Asiatic true toads in the Eastern Palearctic. We used an integrative approach relying on fossilized birth-death calibrations, population dynamics, gene-flow, species distribution, and species delimitation modeling to resolve the biogeography of the clade and highlight cryptic lineages. We verified the near-simultaneous Miocene radiations within Western and Eastern Palearctic Bufo, c. 14.49-10.00 Mya, temporally matching with the maximum dust outflows in Central Asian deserts. Contrary to earlier studies, we demonstrated that the combined impacts of long dispersal and ice-age refugia equally contributed to the current genetic structure of Bufo in East Asia. Our findings reveal a climate-driven adaptation in septentrional Eastern Asian Bufo, explaining its range shifts toward northern latitudes. We resolve species boundaries within the Eastern Palearctic Bufo, and redefine the taxonomic and conservation units of the northeastern species: B. sachalinensis and its subspecies.
Collapse
Affiliation(s)
- Siti N Othman
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry UniversityNanjingChina
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Spartak N Litvinchuk
- Institute of Cytology, Russian Academy of SciencesSt. PetersburgRussian Federation
| | - Irina Maslova
- Federal Scientific Center of the East Asia Terrestrial Biodiversity Far Eastern Branch of Russian Academy of SciencesVladivostokRussian Federation
| | - Hollis Dahn
- Department of Ecology and Evolutionary Biology, University of TorontoTorontoCanada
| | - Kevin R Messenger
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry UniversityNanjingChina
| | - Desiree Andersen
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Michael J Jowers
- CIBIO/InBIO (Centro de Investigação em Biodiversidade e Recursos Genéticos), Universidade do PortoVairãoPortugal
| | - Yosuke Kojima
- Graduate School of Human and Environmental Studies, Kyoto UniversityKyotoJapan
| | - Dmitry V Skorinov
- Institute of Cytology, Russian Academy of SciencesSt. PetersburgRussian Federation
| | | | - Ming-Feng Chuang
- Department of Life Sciences and Research Center for Global Change Biology, National Chung Hsing UniversityTaichungTaiwan
| | - Yi-Huey Chen
- Department of Life Science, Chinese Culture UniversityTaipeiTaiwan
| | - Yoonhyuk Bae
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Jennifer Hoti
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
- Department of Life Sciences and Systems Biology, University of TurinTurinItaly
| | - Yikweon Jang
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Amael Borzee
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry UniversityNanjingChina
| |
Collapse
|
5
|
Borzée A, Litvinchuk SN, Ri K, Andersen D, Nam TY, Jon GH, Man HS, Choe JS, Kwon S, Othman SN, Messenger K, Bae Y, Shin Y, Kim A, Maslova I, Luedtke J, Hobin L, Moores N, Seliger B, Glenk F, Jang Y. Update on Distribution and Conservation Status of Amphibians in the Democratic People's Republic of Korea: Conclusions Based on Field Surveys, Environmental Modelling, Molecular Analyses and Call Properties. Animals (Basel) 2021; 11:2057. [PMID: 34359183 PMCID: PMC8300379 DOI: 10.3390/ani11072057] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 05/25/2021] [Accepted: 07/01/2021] [Indexed: 11/17/2022] Open
Abstract
Determining the range, status, ecology and behaviour of species from areas where surveys and samplings are uncommon or difficult to conduct is a challenge, such as in the Democratic People's Republic of Korea (DPR Korea). Here, we used genetic samples, field surveys, call recordings, photographic identification and a literature review to estimate the presence, range and status of amphibians in the DPR Korea. From our combined results and based on the IUCN Red List categories and criteria, we were able to estimate the national threat levels for most species. Our results demonstrated the presence of 18 native species and the suspected presence of Karsenia koreana and two Onychodactylus species. We reported the first record for Rana uenoi in the vicinity of Pyongyang using molecular tools and similarly confirmed the presence of Dryophytes japonicus at the same location. Based on distribution and modelling, we can expect the contact zone between species within the Rana and Onychodactylus genera to be located along the Changbai Massif, a mountain range that marks a shift in ecoregions and acts as a barrier to dispersion. The species richness was higher in the lowlands and at lower latitudes, with such areas populated by up to 11 species, while more northern regions were characterised by species richness of about half of that value. The combination of ecological models and known threats resulted in the recommendation of ten species as threatened at the national level following the IUCN Red List categories and criteria. This high number of threatened species was anticipated based on the high threat level to amphibians in bordering nations and globally. While the ecology of species in the DPR Korea is still understudied, we argue that species relying on agricultural wetlands such as rice paddies are not under imminent threat due to the enduring presence of extensive agricultural landscapes with low rates of chemical use and mechanisation. The maintenance of such landscapes is a clear benefit to amphibian species, in contrast to more industrialised agricultural landscapes in neighbouring nations. In comparison, the status of species dependent on forested habitats is unclear and threat levels are likely to be higher because of deforestation, as in neighbouring nations.
Collapse
Affiliation(s)
- Amaël Borzée
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China; (Y.B.); (Y.S.)
- Amphibian Specialist Group, IUCN Species Survival Commission, Toronto, ON L5A, Canada; (J.L.); (L.H.)
| | - Spartak N. Litvinchuk
- Institute of Cytology, Russian Academy of Sciences, Tikhoretsky pr. 4, 194064 St. Petersburg, Russia;
- Department of Zoology and Physiology, Dagestan State University, Gadzhiyev str. 43-a, Makhachkala, 3367000 Dagestan, Russia
| | - Kyongsim Ri
- Department of International Economic Cooperation, Ministry of Land and Environment Protection, Pyongyang, Democratic People’s Republic of Korea
| | - Desiree Andersen
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Tu Yong Nam
- Institute of Zoology, State Academy of Science, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Gwang Hyok Jon
- Department of Ecology, State Academy of Science, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Ho Song Man
- Department of Ecology, Life Science College, Kim Il Sung University, Ryongnam-dong, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Jong Sik Choe
- Department of Ecology, Life Science College, Kim Il Sung University, Ryongnam-dong, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Sera Kwon
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Siti N. Othman
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Kevin Messenger
- Herpetology and Applied Conservation Lab, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China;
| | - Yoonhyuk Bae
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China; (Y.B.); (Y.S.)
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Yucheol Shin
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China; (Y.B.); (Y.S.)
| | - Ajoung Kim
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Irina Maslova
- Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of Russian Academy of Sciences, 690022 Vladivostok, Russia;
| | - Jennifer Luedtke
- Amphibian Specialist Group, IUCN Species Survival Commission, Toronto, ON L5A, Canada; (J.L.); (L.H.)
- Re:wild, Austin, TX 78746, USA
| | - Louise Hobin
- Amphibian Specialist Group, IUCN Species Survival Commission, Toronto, ON L5A, Canada; (J.L.); (L.H.)
| | - Nial Moores
- Birds Korea, 101-1902, Hyundai I Park, Busan 48559, Korea;
| | | | - Felix Glenk
- Hanns Seidel Foundation, Seoul 04419, Korea; (B.S.); (F.G.)
| | - Yikweon Jang
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul 03760, Korea;
| |
Collapse
|
6
|
Othman SN, Putri ET, Messenger KR, Bae Y, Yang Y, Bova T, Reed T, Amin H, Chuang MF, Jang Y, Borzée A. Impact of the Miocene orogenesis on Kaloula spp. radiation and implication of local refugia on genetic diversification. Integr Zool 2021; 17:261-284. [PMID: 33734569 DOI: 10.1111/1749-4877.12538] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The phylogeography of the Kaloula genus in East Asia is still poorly understood. One of the difficulties is the absence of fossils to corroborate molecular dating estimates. Here, we examined the mitochondrial structure of Kaloula spp. in East Asia and focused on the impact of glaciations on the northernmost species: Kaloula borealis. We determined the phylogenetic relationships, molecular dating, and genetic connectivity assessments within the genus from 1211 bp of concatenated mitochondrial 12S and 16S. The relaxed clock analyses reveal the emergence of Kaloula spp. common ancestor in East and Southeast Asia between the Eocene and Oligocene, c. 38.47 Ma (24.69-53.65). The genetic diversification of lineages then increased on the East Asian Mainland during the Lower Miocene, c. 20.10 (8.73-30.65), most likely originating from the vicariance and radiation triggered by the orogeny of the Qinghai-Tibetan Plateau. Later, the dispersal towards the North East Asian Mainland during the Upper Miocene drove the population diversification of K. borealis c. 9.01 Ma (3.66-15.29). Finally, the central mainland population became isolated following orogenesis events and diverged into K. rugifera during the Pliocene, c. 3.06 Ma (0.02-10.90). The combination of population genetic and barrier analyses revealed a significant genetic isolation between populations of Kaloula spp. matching with the massive Qinling-Daba Mountain chain located in south-central China. Finally, we highlight a young divergence within the Eastern Mainland population of K. borealis, possibly attributed to refugia in south eastern China from which populations later expanded.
Collapse
Affiliation(s)
- Siti N Othman
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Eggy Triana Putri
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea.,Department of Biology, Faculty of Mathematics and Natural Science, Andalas University, Indonesia
| | - Kevin R Messenger
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, China
| | - Yoonhyuk Bae
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Yi Yang
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, China
| | - Timothy Bova
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, China
| | - Thomas Reed
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, China
| | - Hina Amin
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, China
| | - Ming-Feng Chuang
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Yikweon Jang
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Amaël Borzée
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, China
| |
Collapse
|
7
|
Othman SN, Chen YH, Chuang MF, Andersen D, Jang Y, Borzée A. Impact of the Mid-Pleistocene Revolution and Anthropogenic Factors on the Dispersion of Asian Black-Spined Toads ( Duttaphrynus melanostictus). Animals (Basel) 2020; 10:E1157. [PMID: 32650538 PMCID: PMC7401666 DOI: 10.3390/ani10071157] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Revised: 06/28/2020] [Accepted: 07/01/2020] [Indexed: 11/28/2022] Open
Abstract
Divergence-time estimation critically improves the understanding of biogeography processes underlying the distribution of species, especially when fossil data is not available. We hypothesise that the Asian black-spined toad, Duttaphrynus melanostictus, expanded into the Eastern Indomalaya following the Quaternary glaciations with the subsequent colonisation of new landscapes during the Last Glacial Maximum. Divergence dating inferred from 364 sequences of mitochondrial tRNAGly ND3 supported the emergence of a common ancestor to the three D. melanostictus clades around 1.85 (±0.77) Ma, matching with the Lower to Mid-Pleistocene transition. Duttaphrynus melanostictus then dispersed into Southeast Asia from the central Indo-Pacific and became isolated in the Southern Sundaic and Wallacea regions 1.43 (±0.10) Ma through vicariance as a result of sea level oscillations. The clade on the Southeast Asian mainland then colonised the peninsula from Myanmar to Vietnam and expanded towards Southeastern China at the end of the Mid-Pleistocene Revolution 0.84 (±0.32) Ma. Population dynamics further highlight an expansion of the Southeast Asian mainland population towards Taiwan, the Northeastern edge of the species' range after the last interglacial, and during the emergence of the Holocene human settlements around 7000 BP. Thus, the current divergence of D. melanostictus into three segregated clades was mostly shaped by Quaternary glaciations, followed by natural dispersion events over land bridges and accelerated by anthropogenic activities.
Collapse
Affiliation(s)
- Siti N. Othman
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul 03760, Korea; (S.N.O.); (M.-F.C.); (D.A.); (Y.J.)
| | - Yi-Huey Chen
- Department of Life Science, Chinese Culture University, Taipei 11114, Taiwan;
| | - Ming-Feng Chuang
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul 03760, Korea; (S.N.O.); (M.-F.C.); (D.A.); (Y.J.)
- Department of Life Sciences, National Chung Hsing University, Taichung 40227, Taiwan
| | - Desiree Andersen
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul 03760, Korea; (S.N.O.); (M.-F.C.); (D.A.); (Y.J.)
| | - Yikweon Jang
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul 03760, Korea; (S.N.O.); (M.-F.C.); (D.A.); (Y.J.)
| | - Amaël Borzée
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| |
Collapse
|
8
|
Borzée A, Messenger KR, Chae S, Andersen D, Groffen J, Kim YI, An J, Othman SN, Ri K, Nam TY, Bae Y, Ren JL, Li JT, Chuang MF, Yi Y, Shin Y, Kwon T, Jang Y, Min MS. Yellow sea mediated segregation between North East Asian Dryophytes species. PLoS One 2020; 15:e0234299. [PMID: 32579561 PMCID: PMC7314424 DOI: 10.1371/journal.pone.0234299] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 05/21/2020] [Indexed: 12/13/2022] Open
Abstract
While comparatively few amphibian species have been described on the North East Asian mainland in the last decades, several species have been the subject of taxonomical debates in relation to the Yellow sea. Here, we sampled Dryophytes sp. treefrogs from the Republic of Korea, the Democratic People's Republic of Korea and the People's Republic of China to clarify the status of this clade around the Yellow sea and determine the impact of sea level change on treefrogs' phylogenetic relationships. Based on genetics, call properties, adult morphology, tadpole morphology and niche modelling, we determined the segregated status species of D. suweonensis and D. immaculatus. We then proceeded to describe a new treefrog species, D. flaviventris sp. nov., from the central lowlands of the Republic of Korea. The new species is geographically segregated from D. suweonensis by the Chilgap mountain range and known to occur only in the area of Buyeo, Nonsan and Iksan in the Republic of Korea. While the Yellow sea is the principal element to the current isolation of the three clades, the paleorivers of the Yellow sea basin are likely to have been the major factor for the divergences within this clade. We recommend conducting rapid conservation assessments as these species are present on very narrow and declining ranges.
Collapse
Affiliation(s)
- Amaël Borzée
- College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, People’s Republic of China
| | - Kevin R. Messenger
- College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, People’s Republic of China
| | - Shinhyeok Chae
- Department of Biomedical Engineering, School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea
| | - Desiree Andersen
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Jordy Groffen
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
- Department of Fish and Wildlife Conservation, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Ye Inn Kim
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Junghwa An
- National Institute for Biological Resources, Animal Resources Division, Incheon, Republic of Korea
| | - Siti N. Othman
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Kyongsin Ri
- Department of International Economic Cooperation, Ministry of Land and Environment Protection, Pyongyang, Democratic People’s Republic of Korea
| | - Tu Yong Nam
- Institute of Zoology, State Academy of Science, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Yoonhyuk Bae
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Jin-Long Ren
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, People’s Republic of China
| | - Jia-Tang Li
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, People’s Republic of China
| | - Ming-Feng Chuang
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Yoonjung Yi
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Yucheol Shin
- College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu, People’s Republic of China
| | - Taejoon Kwon
- Department of Biomedical Engineering, School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea
| | - Yikweon Jang
- Department of Life Science and Division of EcoScience, Ewha Womans University, Seoul, Republic of Korea
| | - Mi-Sook Min
- Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, Seoul, Republic of Korea
| |
Collapse
|
9
|
Zainol Rashid Z, Othman SN, Abdul Samat MN, Ali UK, Wong KK. Diagnostic performance of COVID-19 serology assays. Malays J Pathol 2020; 42:13-21. [PMID: 32342927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
INTRODUCTION The World Health Organization (WHO) declared COVID-19 outbreak as a world pandemic on 12th March 2020. Diagnosis of suspected cases is confirmed by nucleic acid assays with real-time PCR, using respiratory samples. Serology tests are comparatively easier to perform, but their utility may be limited by the performance and the fact that antibodies appear later during the disease course. We aimed to describe the performance data on serological assays for COVID-19. MATERIALS AND METHODS A review of multiple reports and kit inserts on the diagnostic performance of rapid tests from various manufacturers that are commercially available were performed. Only preliminary data are available currently. RESULTS From a total of nine rapid detection test (RDT) kits, three kits offer total antibody detection, while six kits offer combination SARS-CoV-2 IgM and IgG detection in two separate test lines. All kits are based on colloidal gold-labeled immunochromatography principle and one-step method with results obtained within 15 minutes, using whole blood, serum or plasma samples. The sensitivity for both IgM and IgG tests ranges between 72.7% and 100%, while specificity ranges between 98.7% to 100%. Two immunochromatography using nasopharyngeal or throat swab for detection of COVID-19 specific antigen are also reviewed. CONCLUSIONS There is much to determine regarding the value of serological testing in COVID-19 diagnosis and monitoring. More comprehensive evaluations of their performance are rapidly underway. The use of serology methods requires appropriate interpretations of the results and understanding the strengths and limitations of such tests.
Collapse
Affiliation(s)
- Z Zainol Rashid
- Universiti Kebangsaan Malaysia Medical Centre, Faculty of Medicine, Department of Medical Microbiology & Immunology, 56000 Kuala Lumpur, Malaysia.
| | | | | | | | | |
Collapse
|
10
|
Zin NM, Othman SN, Abd Rahman FR, Abdul Rachman AR. Evaluation of IgM LAT and IgM ELISA as compared to microscopic agglutination test (MAT) for early diagnosis of Leptospira sp. Trop Biomed 2019; 36:1071-1080. [PMID: 33597476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Leptospirosis is a worldwide zoonotic disease caused by spirochetes of the genus Leptospira. The clinical manifestation of leptospirosis is non-specific and frequently misdiagnosed as other illnesses. The aim of this study was to compare the diagnostic accuracies of two commercial tests for early diagnosis of Leptospira species: the IgM latex agglutination test (IgM LAT) and the IgM enzyme-linked immunosorbent assay (IgM ELISA). A total of 140 serum samples were obtained from patients suspected of leptospirosis at the Universiti Kebangsaan Malaysia Medical Centre (UKMMC). These serum samples were tested for the presence of Leptospira sp. using IgM LAT, IgM ELISA and MAT. From Table 1, IgM LAT showed 21% (n = 29) positive, 18% (n = 25) inconclusive and 61% (n = 86) negative, while IgM ELISA showed 6% (n = 8) positive, 6% (n = 8) inconclusive, 88% (n = 124) negative and MAT showed 11% (n = 16) positive, 47% (n = 65) inconclusive, 42% (n = 59) negative. The sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of IgM LAT were 68.8%, 57.6%, 30.6% and 87.2% respectively, while for IgM ELISA they were 37.5%, 89.8%, 50% and 84.1%, respectively as compared to MAT (Table 2). The results showed that IgM LAT had higher sensitivity but lower specificity compared to IgM ELISA. In conclusion, IgM LAT can be useful as an early screening test for early diagnosis of Leptospira sp., while IgM ELISA is a suitable method for reducing false negative detection of Leptospira sp. As both tests show moderate percentages (~65%) in accuracy, an additional test is required for better detection of Leptospira sp.
Collapse
Affiliation(s)
- N M Zin
- Programme of Biomedical Science, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, Jalan Raja Muda Abdul Aziz, 50300 Kuala Lumpur, Malaysia
| | - S N Othman
- Virology Serology Unit, Department of Medical Microbiology and Immunology, Pusat Perubatan Universiti Kebangsaan Malaysia, Jalan Yaacob Latif, Bandar Tun Razak, 56000, Cheras, Kuala Lumpur Malaysia
| | - F R Abd Rahman
- Programme of Biomedical Science, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, Jalan Raja Muda Abdul Aziz, 50300 Kuala Lumpur, Malaysia
| | - A R Abdul Rachman
- Faculty of Science, Technology, Engineering and Mathematics, International University of Malaya-Wales, City Campus, Jalan Tun Ismail, 50480, Kuala Lumpur, Malaysia
| |
Collapse
|
11
|
Othman SN, Zainol Rashid Z, Abdul Wahab A, Abdul Samat MN, Ding CH, Ali UK. Hepatitis B seroepidemiology and booster vaccination in pre-clinical medical students in a Malaysian university. Malays J Pathol 2018; 40:295-302. [PMID: 30580360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
INTRODUCTION Infant hepatitis B vaccination was introduced into the Expanded Programme on Immunisation (EPI) in Malaysia in 1989. This study aimed to investigate seroprevalence of hepatitis B among UKM pre-clinical medical students, born between 1991 and 1995, and had their infant vaccination more than 20 years ago. MATERIALS AND METHODS A prospective, cross-sectional study involving 352 students, comprising 109 (31.0%) males and 243 (69.0%) females. Blood specimens were tested for anti-HBs, where levels of ≥10 mIU/mL was considered reactive and protective. Students with non-reactive levels were given a 20 μg HBV vaccine booster. Anti-HBs levels were tested six weeks after the first booster dose. Those with anti-HBs <10 mIU/mL were then given another two booster doses, at least one month apart. Anti-HBs levels were tested six weeks after the third dose. RESULTS Ninety-seven students (27.6%) had anti-HBs ranging from 10 to >1000 mIU/mL while 255 (72.4%) had anti-HBs <10 mIU/mL. After one booster dose, 208 (59.1%) mounted anti-HBs ≥10 mIU/mL. Among the remaining 47 (13.3%), all except two students (0.6%) responded following completion of three vaccination doses. They were negative for HBsAg and anti-HBcore antibody, thus regarded as non-responders. CONCLUSIONS Anti-HBs levels waned after 20 years post-vaccination, where more than 70% were within non-reactive levels. For healthcare workers, a booster dose followed by documenting anti-HBs levels of ≥10 mIU/mL may be recommended, to guide the management of post-exposure prophylaxis. Pre-booster anti-HBs testing may not be indicated. Serological surveillance is important in long-term assessment of HBV vaccination programs. No HBV carrier was detected.
Collapse
Affiliation(s)
- S N Othman
- Universiti Kebangsaan Malaysia Medical Centre, Faculty of Medicine, Department of Medical Microbiology & Immunology, Jalan Yaacob Latif, Bandar Tun Razak, 56000 Cheras, Kuala Lumpur, Malaysia.
| | | | | | | | | | | |
Collapse
|
12
|
Shuid AN, Yaman MN, Abd Kadir RA, Hussain RI, Othman SN, Nawi AM, Ugusman A, Daud F, Manap RA, Mohamed IN. Effect of early clinical skills teaching on 3rd year medical students' learning: The student perspective. J Taibah Univ Med Sci 2015. [DOI: 10.1016/j.jtumed.2014.12.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
|
13
|
Hussain RI, Henry LJ, Ramli A, Othman SN, Mohan V, Mohamad HF. Investigation of the morphology of longus colli among patients with neck pain using ultrasonography a preliminary study. Bangladesh J Med Sci 2013. [DOI: 10.3329/bjms.v12i4.13692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Objective: Longus colli provides stability to cervical spine during movements. In clinical practice, the clinicians teach exercises to longus colli to manage neck pain. The aim of this study was to investigate differences in thickness or anterior-posterior dimension (APD), shape ratio and contraction ratio of longus colli between subjects with neck pain and healthy controls. Materials and methods: A total of 12 subjects (6 with neck pain and 6 healthy controls) were recruited by predefined selection criteria. Ultrasound imaging of bilateral longus colli was conducted at the level C5-C6. Anterior-posterior dimension (APD) and lateral dimension (LD) were measured using Ultrasonography. Shape ratio (LD/APD) and contraction ratio (APD during contraction/APD during rest) were calculated. Mann-Whitney U test was used to compare the thickness of longus colli between healthy and neck pain subjects. Results and discussion: The results showed that the subjects with neck pain had smaller APD (Mean Rank=4.83, n=6) than healthy subjects (Mean Rank=8.17, n=6), U=16.00, z=-1.601 (corrected for ties), p=0.109, two tailed. Also, shape ratio showed higher values in neck pain subjects (Mean Rank=7.17, n=6) than normal subjects (Mean Rank=5.83, n=6), U=14.00, z=-0.641(corrected for ties) p=0.522, two tailed. In addition, contraction ratio was smaller in neck pain subjects (Mean Rank=4.83, n=6) than those healthy subjects (Mean Rank=8.17, n=6), U=8.00, z=- 1.601(corrected for ties) p=0.109, two tailed. Conclusion: There is a trend of reduced size of longus colli with the median of APD and smaller contraction ratio among patients with neck pain when compared to healthy controls. DOI: http://dx.doi.org/10.3329/bjms.v12i4.13692 Bangladesh Journal of Medical Science Vol. 12 No. 04 October 13 Page 419-426
Collapse
|