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Tatyana I Kalashnikova

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Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC. Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation. Nat Biotechnol 2023;41:1656. [PMID: 37853256 DOI: 10.1038/s41587-023-02025-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2023]

Affiliation(s)

Julia M Gauglitz Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kiana A West Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Wout Bittremieux Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Candace L Williams Beckman Center for Conservation Research, San Diego Zoo Wildlife Alliance, Escondido, CA, USA
Kelly C Weldon Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Morgan Panitchpakdi Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Francesca Di Ottavio Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Christine M Aceves Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Elizabeth Brown Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Nicole C Sikora Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Alan K Jarmusch Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Cameron Martino Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA
Anupriya Tripathi Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Michael J Meehan Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kathleen Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Justin P Shaffer Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Roxana Coras Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Fernando Vargas Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Lindsay DeRight Goldasich Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Tara Schwartz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
MacKenzie Bryant Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Gregory Humphrey Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Abigail J Johnson Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA
Katharina Spengler Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Pedro Belda-Ferre Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Edgar Diaz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Daniel McDonald Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Qiyun Zhu Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Emmanuel O Elijah Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Mingxun Wang Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Clarisse Marotz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Kate E Sprecher Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA Department of Population Health Sciences, University of Wisconsin-Madison, Madison, WI, USA
Daniela Vargas-Robles Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar, Puerto Ayacucho, Amazonas, Venezuela
Dana Withrow Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Gail Ackermann Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Lourdes Herrera Department of Pediatrics, Billings Clinic, Billings, MT, USA
Barry J Bradford Department of Animal Science, Michigan State University, East Lansing, MI, USA
Lucas Maciel Mauriz Marques Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Juliano Geraldo Amaral Multidisciplinary Health Institute, Federal University of Bahia, Vitória da Conquista, Bahia, Brazil
Rodrigo Moreira Silva NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Flavio Protasio Veras Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Thiago Mattar Cunha Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Rene Donizeti Ribeiro Oliveira Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Paulo Louzada-Junior Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Robert H Mills Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Department of Pharmacology, University of California San Diego, La Jolla, CA, USA
Paulina K Piotrowski Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Stephanie L Servetas Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Sandra M Da Silva Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Christina M Jones Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Nancy J Lin Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Katrice A Lippa Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Scott A Jackson Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Rima Kaddurah Daouk Department of Psychiatry and Behavioral Sciences, Duke University School of Medicine, Durham, Durham, NC, USA Department of Medicine, Duke University, Durham, NC, USA Duke Institute of Brain Sciences, Duke University, Durham, NC, USA
Douglas Galasko Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
Parambir S Dulai Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Tatyana I Kalashnikova Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Curt Wittenberg Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Robert Terkeltaub Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA San Diego VA Healthcare System, San Diego, CA, USA
Megan M Doty Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Division of Neonatology, Department of Pediatrics, Kapi'olani Medical Center for Women and Children, John A. Burns School of Medicine, Honolulu, Hawaii, USA
Jae H Kim Division of Neonatology, Perinatal Institute, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA
Kyung E Rhee Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Julia Beauchamp-Walters Division of Pediatric Hospital Medicine, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA
Kenneth P Wright Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Maria Gloria Dominguez-Bello Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences; Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
Mark Manary Department of Pediatrics, Washington University, St. Louis, MO, USA
Michelli F Oliveira Department of Medicine, University of California San Diego, La Jolla, CA, USA
Brigid S Boland Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Norberto Peporine Lopes NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Monica Guma Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Austin D Swafford Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Rachel J Dutton Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Rob Knight Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Pieter C Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA. Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Pharmacology, University of California San Diego, La Jolla, CA, USA.

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Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC. Enhancing untargeted metabolomics using metadata-based source annotation. Nat Biotechnol 2022;40:1774-1779. [PMID: 35798960 PMCID: PMC10277029 DOI: 10.1038/s41587-022-01368-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 05/20/2022] [Indexed: 01/30/2023]

Affiliation(s)

Julia M Gauglitz Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kiana A West Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Wout Bittremieux Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Candace L Williams Beckman Center for Conservation Research, San Diego Zoo Wildlife Alliance, Escondido, CA, USA
Kelly C Weldon Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Morgan Panitchpakdi Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Francesca Di Ottavio Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Christine M Aceves Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Elizabeth Brown Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Nicole C Sikora Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Alan K Jarmusch Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Cameron Martino Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA
Anupriya Tripathi Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Michael J Meehan Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kathleen Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Justin P Shaffer Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Roxana Coras Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Fernando Vargas Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Lindsay DeRight Goldasich Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Tara Schwartz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
MacKenzie Bryant Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Gregory Humphrey Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Abigail J Johnson Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA
Katharina Spengler Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Pedro Belda-Ferre Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Edgar Diaz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Daniel McDonald Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Qiyun Zhu Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Emmanuel O Elijah Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Mingxun Wang Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Clarisse Marotz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Kate E Sprecher Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA Department of Population Health Sciences, University of Wisconsin-Madison, Madison, WI, USA
Daniela Vargas-Robles Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar, Puerto Ayacucho, Amazonas, Venezuela
Dana Withrow Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Gail Ackermann Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Lourdes Herrera Department of Pediatrics, Billings Clinic, Billings, MT, USA
Barry J Bradford Department of Animal Science, Michigan State University, East Lansing, MI, USA
Lucas Maciel Mauriz Marques Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Juliano Geraldo Amaral Multidisciplinary Health Institute, Federal University of Bahia, Vitória da Conquista, Bahia, Brazil
Rodrigo Moreira Silva NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Flavio Protasio Veras Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Thiago Mattar Cunha Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Rene Donizeti Ribeiro Oliveira Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Paulo Louzada-Junior Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Robert H Mills Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Department of Pharmacology, University of California San Diego, La Jolla, CA, USA
Paulina K Piotrowski Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Stephanie L Servetas Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Sandra M Da Silva Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Christina M Jones Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Nancy J Lin Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Katrice A Lippa Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Scott A Jackson Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Rima Kaddurah Daouk Department of Psychiatry and Behavioral Sciences, Duke University School of Medicine, Durham, Durham, NC, USA Department of Medicine, Duke University, Durham, NC, USA Duke Institute of Brain Sciences, Duke University, Durham, NC, USA
Douglas Galasko Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
Parambir S Dulai Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Tatyana I Kalashnikova Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Curt Wittenberg Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Robert Terkeltaub Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA San Diego VA Healthcare System, San Diego, CA, USA
Megan M Doty Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Division of Neonatology, Department of Pediatrics, Kapi'olani Medical Center for Women and Children, John A. Burns School of Medicine, Honolulu, Hawaii, USA
Jae H Kim Division of Neonatology, Perinatal Institute, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA
Kyung E Rhee Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Julia Beauchamp-Walters Division of Pediatric Hospital Medicine, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA
Kenneth P Wright Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Maria Gloria Dominguez-Bello Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences; Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
Mark Manary Department of Pediatrics, Washington University, St. Louis, MO, USA
Michelli F Oliveira Department of Medicine, University of California San Diego, La Jolla, CA, USA
Brigid S Boland Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Norberto Peporine Lopes NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Monica Guma Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Austin D Swafford Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Rachel J Dutton Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Rob Knight Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Pieter C Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA. Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Pharmacology, University of California San Diego, La Jolla, CA, USA.

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Travesa A, Kuo D, de Bruin RAM, Kalashnikova TI, Guaderrama M, Thai K, Aslanian A, Smolka MB, Yates JR, Ideker T, Wittenberg C. DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1. EMBO J 2012;31:1811-22. [PMID: 22333915 DOI: 10.1038/emboj.2012.28] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2011] [Accepted: 01/20/2012] [Indexed: 12/17/2022] Open

de Bruin RAM, Kalashnikova TI, Chahwan C, McDonald WH, Wohlschlegel J, Yates J, Russell P, Wittenberg C. Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback. Mol Cell 2006;23:483-96. [PMID: 16916637 DOI: 10.1016/j.molcel.2006.06.025] [Citation(s) in RCA: 107] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2006] [Revised: 04/24/2006] [Accepted: 06/26/2006] [Indexed: 11/28/2022]

Spielewoy N, Flick K, Kalashnikova TI, Walker JR, Wittenberg C. Regulation and recognition of SCFGrr1 targets in the glucose and amino acid signaling pathways. Mol Cell Biol 2004;24:8994-9005. [PMID: 15456873 PMCID: PMC517892 DOI: 10.1128/mcb.24.20.8994-9005.2004] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open

de Bruin RAM, McDonald WH, Kalashnikova TI, Yates J, Wittenberg C. Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5. Cell 2004;117:887-98. [PMID: 15210110 DOI: 10.1016/j.cell.2004.05.025] [Citation(s) in RCA: 286] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2003] [Revised: 04/21/2004] [Accepted: 04/22/2004] [Indexed: 11/15/2022]

Flick KM, Spielewoy N, Kalashnikova TI, Guaderrama M, Zhu Q, Chang HC, Wittenberg C. Grr1-dependent inactivation of Mth1 mediates glucose-induced dissociation of Rgt1 from HXT gene promoters. Mol Biol Cell 2003;14:3230-41. [PMID: 12925759 PMCID: PMC181563 DOI: 10.1091/mbc.e03-03-0135] [Citation(s) in RCA: 126] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open

Noskova AV, Gorbunov MA, Pavlova LI, El'shina GA, Sharipova IS, Karpovich LG, Kalashnikova TI, Bektimirov TA, Rikhmer VV, El'nikov VS. [Comparative study of the reactivity, safety and immunogenicity of "Havrix" inactivated hepatitis A vaccine]. Vopr Virusol 2000;45:42-4. [PMID: 11200647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]

Onishchenko AM, Petrov NA, Mamaeva NV, Kalashnikova TI, Grinev AA, Sosnovtsev SV, Degtiarev SK, Karpyshev NN, Perevozchikova NA, Ivaniushchenkov VN. [Primary structure of the gene for protein VP1 from foot-and-mouth disease virus serotype O1 isolated in the USSR]. Mol Gen Mikrobiol Virusol 1990:22-5. [PMID: 1694961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]

Sosnovtsev SV, Onishchenko AM, Petrov NA, Mamaeva NV, Kalashnikova TI, Perevozchikova NA, Ivaniushchenkov VN, Burdov AN, Vasilenko SK. [Primary structure of the gene for VP1 protein of the foot-and-mouth disease virus of Asia 1 serotype]. Mol Gen Mikrobiol Virusol 1989:44-6. [PMID: 2561378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]

Leshkevich IA, Dobronravov AV, Kalashnikova TI, Semenkova AS. [Phototherapy and infusion therapy of hemolytic diseases of the newborn due to rhesus factor incompatibility]. Vopr Okhr Materin Det 1979;24:15-9. [PMID: 112781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]

Kalashnikova TI. [Activity of inorganic pyrophosphatase of erythrocytes in children with acute leukemia]. Pediatriia 1969;48:38-40. [PMID: 5820882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]