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Rodrigo Moreira Silva

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Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC. Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation. Nat Biotechnol 2023;41:1656. [PMID: 37853256 DOI: 10.1038/s41587-023-02025-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2023]

Affiliation(s)

Julia M Gauglitz Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kiana A West Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Wout Bittremieux Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Candace L Williams Beckman Center for Conservation Research, San Diego Zoo Wildlife Alliance, Escondido, CA, USA
Kelly C Weldon Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Morgan Panitchpakdi Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Francesca Di Ottavio Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Christine M Aceves Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Elizabeth Brown Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Nicole C Sikora Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Alan K Jarmusch Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Cameron Martino Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA
Anupriya Tripathi Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Michael J Meehan Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kathleen Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Justin P Shaffer Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Roxana Coras Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Fernando Vargas Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Lindsay DeRight Goldasich Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Tara Schwartz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
MacKenzie Bryant Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Gregory Humphrey Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Abigail J Johnson Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA
Katharina Spengler Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Pedro Belda-Ferre Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Edgar Diaz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Daniel McDonald Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Qiyun Zhu Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Emmanuel O Elijah Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Mingxun Wang Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Clarisse Marotz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Kate E Sprecher Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA Department of Population Health Sciences, University of Wisconsin-Madison, Madison, WI, USA
Daniela Vargas-Robles Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar, Puerto Ayacucho, Amazonas, Venezuela
Dana Withrow Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Gail Ackermann Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Lourdes Herrera Department of Pediatrics, Billings Clinic, Billings, MT, USA
Barry J Bradford Department of Animal Science, Michigan State University, East Lansing, MI, USA
Lucas Maciel Mauriz Marques Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Juliano Geraldo Amaral Multidisciplinary Health Institute, Federal University of Bahia, Vitória da Conquista, Bahia, Brazil
Rodrigo Moreira Silva NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Flavio Protasio Veras Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Thiago Mattar Cunha Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Rene Donizeti Ribeiro Oliveira Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Paulo Louzada-Junior Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Robert H Mills Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Department of Pharmacology, University of California San Diego, La Jolla, CA, USA
Paulina K Piotrowski Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Stephanie L Servetas Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Sandra M Da Silva Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Christina M Jones Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Nancy J Lin Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Katrice A Lippa Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Scott A Jackson Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Rima Kaddurah Daouk Department of Psychiatry and Behavioral Sciences, Duke University School of Medicine, Durham, Durham, NC, USA Department of Medicine, Duke University, Durham, NC, USA Duke Institute of Brain Sciences, Duke University, Durham, NC, USA
Douglas Galasko Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
Parambir S Dulai Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Tatyana I Kalashnikova Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Curt Wittenberg Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Robert Terkeltaub Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA San Diego VA Healthcare System, San Diego, CA, USA
Megan M Doty Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Division of Neonatology, Department of Pediatrics, Kapi'olani Medical Center for Women and Children, John A. Burns School of Medicine, Honolulu, Hawaii, USA
Jae H Kim Division of Neonatology, Perinatal Institute, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA
Kyung E Rhee Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Julia Beauchamp-Walters Division of Pediatric Hospital Medicine, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA
Kenneth P Wright Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Maria Gloria Dominguez-Bello Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences; Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
Mark Manary Department of Pediatrics, Washington University, St. Louis, MO, USA
Michelli F Oliveira Department of Medicine, University of California San Diego, La Jolla, CA, USA
Brigid S Boland Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Norberto Peporine Lopes NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Monica Guma Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Austin D Swafford Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Rachel J Dutton Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Rob Knight Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Pieter C Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA. Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Pharmacology, University of California San Diego, La Jolla, CA, USA.

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Silva RM, Rocha J, Silva RF. ALD/MLD coating of patterned vertically aligned carbon nanotube micropillars with Fe-NH₂TP hybrids. Nanoscale 2023. [PMID: 37306049 DOI: 10.1039/d3nr01610b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]

Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC. Enhancing untargeted metabolomics using metadata-based source annotation. Nat Biotechnol 2022;40:1774-1779. [PMID: 35798960 PMCID: PMC10277029 DOI: 10.1038/s41587-022-01368-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 05/20/2022] [Indexed: 01/30/2023]

Affiliation(s)

Julia M Gauglitz Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kiana A West Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Wout Bittremieux Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Candace L Williams Beckman Center for Conservation Research, San Diego Zoo Wildlife Alliance, Escondido, CA, USA
Kelly C Weldon Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Morgan Panitchpakdi Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Francesca Di Ottavio Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Christine M Aceves Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Elizabeth Brown Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Nicole C Sikora Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Alan K Jarmusch Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Cameron Martino Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA
Anupriya Tripathi Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Michael J Meehan Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Kathleen Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Justin P Shaffer Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Roxana Coras Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Fernando Vargas Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Lindsay DeRight Goldasich Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Tara Schwartz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
MacKenzie Bryant Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Gregory Humphrey Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Abigail J Johnson Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA
Katharina Spengler Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA
Pedro Belda-Ferre Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Edgar Diaz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Daniel McDonald Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Qiyun Zhu Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Emmanuel O Elijah Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Mingxun Wang Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
Clarisse Marotz Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Kate E Sprecher Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA Department of Population Health Sciences, University of Wisconsin-Madison, Madison, WI, USA
Daniela Vargas-Robles Servicio Autónomo Centro Amazónico de Investigación y Control de Enfermedades Tropicales Simón Bolívar, Puerto Ayacucho, Amazonas, Venezuela
Dana Withrow Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Gail Ackermann Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Lourdes Herrera Department of Pediatrics, Billings Clinic, Billings, MT, USA
Barry J Bradford Department of Animal Science, Michigan State University, East Lansing, MI, USA
Lucas Maciel Mauriz Marques Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Juliano Geraldo Amaral Multidisciplinary Health Institute, Federal University of Bahia, Vitória da Conquista, Bahia, Brazil
Rodrigo Moreira Silva NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Flavio Protasio Veras Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Thiago Mattar Cunha Department of Pharmacology, Ribeirão Preto Medicinal School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Rene Donizeti Ribeiro Oliveira Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Paulo Louzada-Junior Department of Internal Medicine, Ribeirão Preto Medical School, Center of Research in Inflammatory Diseases, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Robert H Mills Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Department of Pharmacology, University of California San Diego, La Jolla, CA, USA
Paulina K Piotrowski Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Stephanie L Servetas Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Sandra M Da Silva Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Christina M Jones Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Nancy J Lin Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Katrice A Lippa Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Scott A Jackson Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA
Rima Kaddurah Daouk Department of Psychiatry and Behavioral Sciences, Duke University School of Medicine, Durham, Durham, NC, USA Department of Medicine, Duke University, Durham, NC, USA Duke Institute of Brain Sciences, Duke University, Durham, NC, USA
Douglas Galasko Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
Parambir S Dulai Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Tatyana I Kalashnikova Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Curt Wittenberg Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA
Robert Terkeltaub Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA San Diego VA Healthcare System, San Diego, CA, USA
Megan M Doty Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA Division of Neonatology, Department of Pediatrics, Kapi'olani Medical Center for Women and Children, John A. Burns School of Medicine, Honolulu, Hawaii, USA
Jae H Kim Division of Neonatology, Perinatal Institute, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA
Kyung E Rhee Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Julia Beauchamp-Walters Division of Pediatric Hospital Medicine, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA
Kenneth P Wright Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA
Maria Gloria Dominguez-Bello Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences; Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
Mark Manary Department of Pediatrics, Washington University, St. Louis, MO, USA
Michelli F Oliveira Department of Medicine, University of California San Diego, La Jolla, CA, USA
Brigid S Boland Division of Gastroenterology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Norberto Peporine Lopes NPPNS, Department of Biomolecular Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paolo, Brazil
Monica Guma Division of Rheumatology, Allergy & Immunology, Department of Medicine, University of California San Diego, La Jolla, CA, USA
Austin D Swafford Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Rachel J Dutton Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
Rob Knight Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Pieter C Dorrestein Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA. Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. Department of Pharmacology, University of California San Diego, La Jolla, CA, USA.

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Silva RM, Silva IMM, Jesus MC, Fernandes MDB, Oliveira FS, Evêncio-Neto J. Co-relationship between Escherichia coli in broiler cellulitis and liver lesions. BRAZ J BIOL 2021;81:714-718. [PMID: 32965333 DOI: 10.1590/1519-6984.230243] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 03/18/2020] [Indexed: 12/17/2022] Open

Abstract

Pathogenic strains of Escherichia coli may invade the subcutaneous tissue of poultry and cause cellulitis, whilst the pathogen may also cause lesions in internal organs such as the liver. Current paper co-relates Escherichia coli and virulence genes characteristic of Avian Pathogenic Escherichia coli (APEC) in broilers´ cellulitis and liver lesions. One hundred carcasses were retrieved from the production chain in an avian abattoir in the state of Bahia, Brazil, between August 2013 and January 2014, due to detection of cellulitis lesions. Cellulitis and liver samples were retrieved aseptically to quantify E. coli by Petrifilm™ count fast method (3M Company) (AOAC 998.8). Virulent genes iss and iutA were removed from E. coli isolates by Polymerase Chain Reaction (PCR). Escherichia coli was isolated from 82.0% of broilers removed from the production chain and the bacterium was concomitantly detected in cellulitis and liver lesions in 40.0% of broilers. E. coli counts ranged between 1.00 and 4.73 log CFU/g in liver lesions and between 2.00 and 9.00 log UFC/g in cellulitis lesions. Virulent genes iutA and iss were detected in 97.56% and 89.02% of E. coli isolates, respectively. Genotype analysis demonstrated the concomitant amplification of genes iutA and iss in 60.0% (n=40) of samples of cellulitis and liver lesions in which the simultaneous isolation of E. coli occurred. There was a positive and significant co-relationship (r=0.22; p<0.05) between the variables occurrence of E. coli isolated from liver samples and the occurrence of E. coli isolated from cellulitis lesions. There were also positive and significant co-relationships between populations of E. coli from liver isolates and cellulitis lesions (r=0.46; p<0.05) when E. coli isolated in the liver and in cellulitis lesions was detected. Since results showed a relationship between E. coli in cellulitis and liver lesions and possible systemic infection, the occurrence of cellulitis lesions as a criterion for total discarding of carcass may be suggested.

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Silva RM, Abreu AA, Salvador AF, Alves MM, Neves IC, Pereira MA. Zeolite addition to improve biohydrogen production from dark fermentation of C5/C6-sugars and Sargassum sp. biomass. Sci Rep 2021;11:16350. [PMID: 34381104 PMCID: PMC8358045 DOI: 10.1038/s41598-021-95615-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 07/20/2021] [Indexed: 11/17/2022] Open

Abstract

Thermophilic biohydrogen production by dark fermentation from a mixture (1:1) of C5 (arabinose) and C6 (glucose) sugars, present in lignocellulosic hydrolysates, and from Sargassum sp. biomass, is studied in this work in batch assays and also in a continuous reactor experiment. Pursuing the interest of studying interactions between inorganic materials (adsorbents, conductive and others) and anaerobic bacteria, the biological processes were amended with variable amounts of a zeolite type-13X in the range of zeolite/inoculum (in VS) ratios (Z/I) of 0.065–0.26 g g⁻¹. In the batch assays, the presence of the zeolite was beneficial to increase the hydrogen titer by 15–21% with C5 and C6-sugars as compared to the control, and an increase of 27% was observed in the batch fermentation of Sargassum sp. Hydrogen yields also increased by 10–26% with sugars in the presence of the zeolite. The rate of hydrogen production increased linearly with the Z/I ratios in the experiments with C5 and C6-sugars. In the batch assay with Sargassum sp., there was an optimum value of Z/I of 0.13 g g⁻¹ where the H₂ production rate observed was the highest, although all values were in a narrow range between 3.21 and 4.19 mmol L⁻¹ day⁻¹. The positive effect of the zeolite was also observed in a continuous high-rate reactor fed with C5 and C6-sugars. The increase of the organic loading rate (OLR) from 8.8 to 17.6 kg m⁻³ day⁻¹ of COD led to lower hydrogen production rates but, upon zeolite addition (0.26 g g⁻¹ VS inoculum), the hydrogen production increased significantly from 143 to 413 mL L⁻¹ day⁻¹. Interestingly, the presence of zeolite in the continuous operation had a remarkable impact in the microbial community and in the profile of fermentation products. The effect of zeolite could be related to several properties, including the porous structure and the associated surface area available for bacterial adhesion, potential release of trace elements, ion-exchanger capacity or ability to adsorb different compounds (i.e. protons). The observations opens novel perspectives and will stimulate further research not only in biohydrogen production, but broadly in the field of interactions between bacteria and inorganic materials.

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Silva RM. COVID-19 in Brazil: The catastrophic results of an inappropriate and unequal health policy. ACTA ACUST UNITED AC 2021;18:100673. [PMID: 33898691 PMCID: PMC8057737 DOI: 10.1016/j.jemep.2021.100673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 04/13/2021] [Indexed: 12/05/2022]

Nagendrababu V, Kishen A, Murray PE, Nekoofar MH, de Figueiredo JAP, Priya E, Jayaraman J, Pulikkotil SJ, Camilleri J, Silva RM, Dummer PMH. PRIASE 2021 guidelines for reporting animal studies in Endodontology: a consensus-based development. Int Endod J 2021;54:848-857. [PMID: 33450080 DOI: 10.1111/iej.13477] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 01/12/2021] [Indexed: 01/10/2023]

Abstract

Animal testing is crucial in situations when research on humans is not allowed because of unknown health risks and ethical concerns. The current project aims to develop reporting guidelines exclusively for animal studies in Endodontology, using an established consensus-based methodology. The guidelines have been named: Preferred Reporting Items for Animal Studies in Endodontology (PRIASE) 2021. Nine individuals (PD, VN, AK, PM, MN, JF, EP, JJ and SJ), including the project leaders (PD, VN) formed a steering committee. The steering committee developed a novel checklist by adapting and integrating their animal testing and peer review experience with the Animals in Research: Reporting In Vivo Experiments (ARRIVE) guidelines and also the Clinical and Laboratory Images in Publications (CLIP) principles. A PRIASE Delphi Group (PDG) and PRIASE Online Meeting Group (POMG) were also formed. Thirty-one PDG members participated in the online Delphi process and achieved consensus on the checklist items and flowchart that were used to formulate the PRIASE guidelines. The novel PRIASE 2021 guidelines were discussed with the POMG on 9 September 2020 via a Zoom online video call attended by 21 individuals from across the globe and seven steering committee members. Following the discussions, the guidelines were modified and then piloted by several authors whilst writing a manuscript involving research on animals. The PRIASE 2021 guidelines are a checklist consisting of 11 domains and 43 individual items together with a flowchart. The PRIASE 2021 guidelines are focused on improving the methodological principles, reproducibility and quality of animal studies in order to enhance their reliability as well as repeatability to estimate the effects of endodontic treatments and usefulness for guiding future clinical studies on humans.

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Botelho APPP, Netto FCB, Silva RM, Filho CG, Chiesa D, Probo DRG, Santos MCL, Queiroz BL, Sales JMO, Vasconcelos LB. Clinical profile of home-based care patients in a Brazilian cohort. Eur J Public Health 2020. [DOI: 10.1093/eurpub/ckaa165.546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open

Abstract Abstract Background The concern with increasing healthcare expenditures and the quality of life of chronically dependent of invasive mechanical ventilation (IMV) patients, led to the emergence of home-based care services (HBCS), which aims the humanization of health services and the reduction of hospital length of stay. Knowledge about the models used in HBCS and the results achieved is essential to identify, plan and execute actions that minimize obstacles to the adequate provision of this service. Methods Descriptive, longitudinal and retrospective study, in a HBCS provided by a private hospital in Fortaleza, Brazil. The medical records of 98 adult patients from the HBCS in need of IMV were analyzed. Results In 2019, 156 patients went through the HBCS. Of these, 58 were under 18 years-old and not included in the sample. Of the adult patients, 42 (42,8%) were male and 56 (57,1%) female. The age range varied from 28 to 102 years-old and the median age was 85 years. 57 (58,2%) patients were admitted throughout 2019, and 16 (28,1%) of them had, at least, 1 hospital readmission in 2019. 41 (41,8%) patients had been admitted before 2019, and 6 (14,6%) of them had, at least, 1 readmission in 2019. These facts may suggest that the need of hospitalization tend to happen more at the beginning of home-based care. In 2019, 13 (13,3%) patients died. 8 (61,5%) of these were admitted in 2019, and 5 (38,4%) were already in the HBCS before that year. The main diagnosis were: Dementia (21,4%), Chronic Encephalopathy (9,1%) and Multiple Sclerosis (8,2%). Conclusions The study shows that, even in an elderly and dependent cohort, the need of re-hospitalization and mortality rates are low, which points to the need of further studies of HBCS in order to reduce hospital stay and expenditures. Key messages It is important to deepen studies related to home-based care models, in association with payment expenses inquiries, as this type of assistance seems to develop humanized and safe care. The mortality rate of the HBCS studied was 13% and the overall re-hospitalization rate was 22,4%, which points this as a promising model for IMV dependent patients. Collapse

Cavalla F, Letra A, Silva RM, Garlet GP. Determinants of Periodontal/Periapical Lesion Stability and Progression. J Dent Res 2020;100:29-36. [PMID: 32866421 DOI: 10.1177/0022034520952341] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open

Abstract

Periodontal and periapical lesions are infectious inflammatory osteolitytic conditions in which a complex inflammatory immune response mediates bone destruction. However, the uncertainty of a lesion's progressive or stable phenotype complicates understanding of the cellular and molecular mechanisms triggering lesion activity. Evidence from clinical and preclinical studies of both periodontal and periapical lesions points to a high receptor activator of NF-κB ligand/osteoprotegerin (RANKL/OPG) ratio as the primary determinant of osteolytic activity, while a low RANKL/OPG ratio is often observed in inactive lesions. Proinflammatory cytokines directly modulate RANKL/OPG expression and consequently drive lesion progression, along with pro-osteoclastogenic support provided by Th1, Th17, and B cells. Conversely, the cooperative action between Th2 and Tregs subsets creates an anti-inflammatory and proreparative milieu associated with lesion stability. Interestingly, the trigger for lesion status switch from active to inactive can originate from an unanticipated RANKL immunoregulatory feedback, involving the induction of Tregs and a host response outcome with immunological tolerance features. In this context, dendritic cells (DCs) appear as potential determinants of host response switch, since RANKL imprint a tolerogenic phenotype in DCs, described to be involved in both Tregs and immunological tolerance generation. The tolerance state systemically and locally suppresses the development of exacerbated and pathogenic responses and contributes to lesions stability. However, immunological tolerance break by comorbidities or dysbiosis could explain lesions relapse toward activity. Therefore, this article will provide a critical review of the current knowledge concerning periodontal and periapical lesions activity and the underlying molecular mechanisms associated with the host response. Further studies are required to unravel the role of immunological responsiveness or tolerance in the determination of lesion status, as well as the potential cooperative and/or inhibitory interplay among effector cells and their impact on RANKL/OPG balance and lesion outcome.

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Silva RM, Morais IG, Almeida AV, Pereira OM, Silva AM, Sá EC. Spinal Myoclonus: Is It An Anesthetic Mystery? ACTA ACUST UNITED AC 2019;67:108-111. [PMID: 31759616 DOI: 10.1016/j.redar.2019.08.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Revised: 08/01/2019] [Accepted: 08/28/2019] [Indexed: 10/25/2022]

Souza LC, Crozeta BM, Guajardo L, Brasil da Costa FH, Sousa-Neto MD, Letra A, Silva RM. Potential role of TP63 in apical periodontitis development. Int Endod J 2019;52:1344-1353. [PMID: 31025362 DOI: 10.1111/iej.13133] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 04/23/2019] [Indexed: 12/25/2022]

Abstract

AIM

To investigate the expression of TP63 in apical periodontitis (AP) tissues and the association of single nucleotide polymorphisms (SNPs) in the TP63 gene with AP using a case-control dataset.

METHODOLOGY

Expression of TP63 in human AP lesions (apical abscess, radicular cyst, periapical granuloma) was evaluated using immunohistochemistry. A case-control association study was performed to assess the association of TP63 polymorphisms in individuals having AP with or without associated pain. Cases were defined as subjects with deep caries and AP (n = 151) and subjects with symptomatic apical periodontitis or acute apical abscess (n = 124). Subjects without AP (n = 169) and asymptomatic (n = 196) were used as controls, respectively. Saliva samples were collected as source of genomic DNA. Twelve SNPs in the TP63 gene were selected for genotyping using Taqman chemistry in real-time PCR. Data analysis was performed using PLINK software. The Bonferroni method was applied to correct for multiple testing; α ≤ 0.004 indicates significant differences between groups.

RESULTS

TP63 expression was evident in apical abscesses and radicular cysts, while weaker expression was observed in periapical granulomas. Positive expression was observed in mononuclear cells in the granulation tissues of all AP lesions. Regarding the presence of AP, a trend for allelic association was observed for rs16864812 and rs9810322 (P = 0.04) and rs9810322 genotypes were also nominally associated with AP under a dominant model (P = 0.04). When considering the presence of periapical pain, a trend for allelic and genotypic association was observed for rs10155037 (P = 0.03). Haplotypes were also associated with AP and periapical pain (P ≤ 0.05).

CONCLUSIONS

Apical periodontitis is a complex multifactorial condition and it is likely that multiple genes and environmental effects may influence its susceptibility, progression or both. TP63 variants may play a role in AP pathogenesis and susceptibility, individually or interactively with other genes. Additional studies in other populations and functional studies are needed to improve understanding of the role of TP63 in AP.

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Wichnieski C, Maheshwari K, Souza LC, Nieves F, Tartari T, Garlet GP, Carneiro E, Letra A, Silva RM. DNA methylation profiles of immune response-related genes in apical periodontitis. Int Endod J 2018;52:5-12. [PMID: 29904933 DOI: 10.1111/iej.12966] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 06/12/2018] [Indexed: 12/27/2022]

Pedrosa AF, Lisboa C, Faria-Ramos I, Silva RM, Miranda IM, Rodrigues AG. Malassezia species retrieved from skin with pityriasis versicolor, seborrhoeic dermatitis and skin free of lesions: a comparison of two sampling methods. Br J Dermatol 2018;179:526-527. [PMID: 29505089 DOI: 10.1111/bjd.16521] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]

Branco J, Ola M, Silva RM, Fonseca E, Gomes NC, Martins-Cruz C, Silva AP, Silva-Dias A, Pina-Vaz C, Erraught C, Brennan L, Rodrigues AG, Butler G, Miranda IM. Impact of ERG3 mutations and expression of ergosterol genes controlled by UPC2 and NDT80 in Candida parapsilosis azole resistance. Clin Microbiol Infect 2017;23:575.e1-575.e8. [PMID: 28196695 DOI: 10.1016/j.cmi.2017.02.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Revised: 02/05/2017] [Accepted: 02/06/2017] [Indexed: 12/22/2022]

Affiliation(s)

J Branco Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal
M Ola UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin, Ireland
R M Silva Department of Medical Sciences, iBiMED & IEETA, University of Aveiro, Aveiro, Portugal
E Fonseca Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal
N C Gomes Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal
C Martins-Cruz Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal
A P Silva Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal; CINTESIS-Centre for Health Technology and Services Research, Faculty of Medicine, University of Porto, Porto, Portugal
A Silva-Dias Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal; CINTESIS-Centre for Health Technology and Services Research, Faculty of Medicine, University of Porto, Porto, Portugal
C Pina-Vaz Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal; CINTESIS-Centre for Health Technology and Services Research, Faculty of Medicine, University of Porto, Porto, Portugal
C Erraught Institute of Food and Health, School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
L Brennan Institute of Food and Health, School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
A G Rodrigues Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal; CINTESIS-Centre for Health Technology and Services Research, Faculty of Medicine, University of Porto, Porto, Portugal
G Butler UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin, Ireland
I M Miranda Division of Microbiology, Department of Pathology, Faculty of Medicine, University of Porto, Porto, Portugal; CINTESIS-Centre for Health Technology and Services Research, Faculty of Medicine, University of Porto, Porto, Portugal.

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Silva RM, Ferro MC, Araujo JR, Achete CA, Clavel G, Silva RF, Pinna N. Nucleation, Growth Mechanism, and Controlled Coating of ZnO ALD onto Vertically Aligned N-Doped CNTs. Langmuir 2016;32:7038-7044. [PMID: 27333190 DOI: 10.1021/acs.langmuir.6b00869] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]

Placido GR, Silva RM, Cagnin C, Silva MAP, Soares JC, Caliari M. Use of pectin in the storage of mangaba fruits (Hancorniaspeciosa Gomes) associated with refrigeration. ACTA ACUST UNITED AC 2015. [DOI: 10.5897/ajb2015.14526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]

Placido GR, Silva RM, Silva MAP, Caliari M, Cagnin C. Physical and chemical parameters, total phenols and the antioxidant activity of Pequi (Caryocar brasiliense Camb). ACTA ACUST UNITED AC 2015. [DOI: 10.5897/ajar2014.9364] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]

Letra A, Zhao M, Silva RM, Vieira AR, Hecht JT. Functional Significance of MMP3 and TIMP2 Polymorphisms in Cleft Lip/Palate. J Dent Res 2014;93:651-6. [PMID: 24799419 DOI: 10.1177/0022034514534444] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2013] [Accepted: 04/15/2014] [Indexed: 11/17/2022] Open

Santos ACM, Zidko ACM, Pignatari AC, Silva RM. Assessing the diversity of the virulence potential of Escherichia coli isolated from bacteremia in São Paulo, Brazil. Braz J Med Biol Res 2013;46:968-973. [PMID: 24141553 PMCID: PMC3854340 DOI: 10.1590/1414-431x20133184] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2013] [Accepted: 07/29/2013] [Indexed: 12/16/2022] Open

Monteiro RF, Nascimento MS, Silva RM, Hespenheide HA. A remarkable leaf mine induced by Tachygonus sp.n. (Coleoptera: Curculionidae: Curculioninae: Rhamphini) on Erythroxylum subsessile (Erythroxylaceae) with a description of the new species. BRAZ J BIOL 2013;72:949-53. [PMID: 23295527 DOI: 10.1590/s1519-69842012000500024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2011] [Accepted: 02/17/2012] [Indexed: 11/21/2022] Open

Grégoire A, Allard A, Huamán E, León S, Silva RM, Buff S, Berard M, Joly T. Control of the estrous cycle in guinea-pig (Cavia porcellus). Theriogenology 2012;78:842-7. [PMID: 22626773 DOI: 10.1016/j.theriogenology.2012.03.034] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2012] [Revised: 03/22/2012] [Accepted: 03/24/2012] [Indexed: 12/01/2022]

Letra A, Bjork B, Cooper ME, Szabo-Rogers H, Deleyiannis FWB, Field LL, Czeizel AE, Ma L, Garlet GP, Poletta FA, Mereb JC, Lopez-Camelo JS, Castilla EE, Orioli IM, Wendell S, Blanton SH, Liu K, Hecht JT, Marazita ML, Vieira AR, Silva RM. Association of AXIN2 with non-syndromic oral clefts in multiple populations. J Dent Res 2012;91:473-8. [PMID: 22370446 DOI: 10.1177/0022034512440578] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open

Silva RM, Ferreira MS, Kobelke J, Schuster K, Frazão O. Simultaneous measurement of curvature and strain using a suspended multicore fiber. Opt Lett 2011;36:3939-3941. [PMID: 21964148 DOI: 10.1364/ol.36.003939] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]

Costa LM, Lourenço EC, Esbérard CEL, Silva RM. Colony size, sex ratio and cohabitation in roosts of Phyllostomus hastatus (Pallas) (Chiroptera: Phyllostomidae). BRAZ J BIOL 2010;70:1047-53. [PMID: 21180912 DOI: 10.1590/s1519-69842010000500019] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2009] [Accepted: 01/12/2010] [Indexed: 11/21/2022] Open

Lourenço EC, Costa LM, Silva RM, Esbérard CEL. Bat diversity of Ilha da Marambaia, Southern Rio de Janeiro State, Brazil (Chiroptera, Mammalia). BRAZ J BIOL 2010;70:511-9. [PMID: 20730337 DOI: 10.1590/s1519-69842010000300007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2009] [Accepted: 07/28/2009] [Indexed: 11/22/2022] Open

Dias VMA, Campos APCB, Chagas AJ, Silva RM. Congenital hypothyroidism: etiology. J Pediatr Endocrinol Metab 2010;23:815-26. [PMID: 21073124 DOI: 10.1515/jpem.2010.131] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]

Santos SR, Rangel ET, Lima JCS, Silva RM, Lopes L, Noldin VF, Cechinel Filho V, Delle Monache F, Martins DTO. Toxicological and phytochemical studies of Aspidosperma subincanum Mart. stem bark (Guatambu). Pharmazie 2009;64:836-839. [PMID: 20095144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]

Do Carmo Filho JR, Silva RM, Castanheira M, Tognim MCB, Gales AC, Sader HS. Prevalence and genetic characterization of blaCTX-M among Klebsiella pneumoniae isolates collected in an intensive care unit in Brazil. J Chemother 2009;20:600-3. [PMID: 19028623 DOI: 10.1179/joc.2008.20.5.600] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]

Liberatore AMA, Menchaca-Diaz JL, Silva RM, Taki MY, Silva MR, Francisco J, Koh TH, Morais MB, Koh IHJ. Sepsis provokes host's microbiota overgrowth of commensal Gram-negative bacteria and subsequent induction of bacterial translocation in rats. Crit Care 2007. [PMCID: PMC3301150 DOI: 10.1186/cc5810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open

Salzedas-Netto AA, Silva RM, Martins JL, Menchaca-Diaz JL, Bugni GM, Watanabe AY, Silva FJP, Fagundes-Neto U, Morais MB, Koh IHJ. Can bacterial translocation be a beneficial event? Transplant Proc 2006;38:1836-7. [PMID: 16908297 DOI: 10.1016/j.transproceed.2006.05.049] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]

Koh IHJ, Liberatore AMA, Menchaca-Diaz JL, Ruiz-Silva M, Vilela-Oliveira L, Watanabe AY, Salomao R, Fagundes-Neto U, Silva RM. Bacterial Translocation, Microcirculation Injury and Sepsis. Endocr Metab Immune Disord Drug Targets 2006;6:143-50. [PMID: 16787288 DOI: 10.2174/187153006777442323] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]

Vizcaino JR, Macedo-Dias JA, Teixeira-de-Sousa JM, Silva RM, Carpenter S. Pseudotumour of renal pelvis: Liesegang rings mimicking a solid neoplasm of the renal pelvis. Histopathology 2005;47:115-7. [PMID: 15982333 DOI: 10.1111/j.1365-2559.2005.02114.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]

Salzedas-netto A, Silva R, Martins J, Menchaca-diaz J, Bugni G, Watanabe A, Silva F, Fagundes-neto U, Morais M, Koh I. Crit Care 2005;9:P60. [DOI: 10.1186/cc3604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Büchele G, Silva E, Silva R, Vilela-oliveira L, Toma R, Liberatore A, Menchaca-diaz J, Watanabe A, Fagundes-neto U, Poli de Figueiredo L, Koh I. Crit Care 2005;9:P61. [DOI: 10.1186/cc3605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Koh I, Menchaca-diaz J, Buchele G, Vilela-oliveira L, Toma R, Liberatore A, Watanabe A, Poli de Figueiredo L, Fagundes-neto U, Silva R. Crit Care 2005;9:P58. [DOI: 10.1186/cc3602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Vilela-oliveira L, Silva R, Menchaca-diaz J, Toma R, Buchele G, Liberatore A, Watanabe A, Poli de Figueiredo L, Fagundes-neto U, Koh I. Crit Care 2005;9:P52. [DOI: 10.1186/cc3596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Menchaca-diaz J, Silva R, Vilela-oliveira L, Liberatore A, Toma R, Watanabe A, Buchele G, Fagundes-neto U, Morais M, Koh I. Crit Care 2005;9:P50. [DOI: 10.1186/cc3594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Watanabe A, Silva R, Liberatore A, Menchaca-diaz J, Toma R, Buchele G, Vilela-oliveira L, Morais M, Fagundes-neto U, Koh I. Crit Care 2005;9:P51. [DOI: 10.1186/cc3595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Morais M, Menchaca-diaz J, Liberatore A, Amâncio O, Silva R, Fagundes-neto U, Koh I. Crit Care 2005;9:P62. [DOI: 10.1186/cc3606] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Toma R, Silva R, Liberatore A, Vilela-oliveira L, Menchaca-diaz J, Buchele G, Watanabe A, Morais M, Fagundes-neto U, Koh I. Crit Care 2005;9:P59. [DOI: 10.1186/cc3603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Silva RM, Silva GA, Coutinho OP, Mano JF, Reis RL. Preparation and characterisation in simulated body conditions of glutaraldehyde crosslinked chitosan membranes. J Mater Sci Mater Med 2004;15:1105-1112. [PMID: 15516871 DOI: 10.1023/b:jmsm.0000046392.44911.46] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]

Viciosa MT, Dionísio M, Silva RM, Reis RL, Mano JF. Molecular Motions in Chitosan Studied by Dielectric Relaxation Spectroscopy. Biomacromolecules 2004;5:2073-8. [PMID: 15360326 DOI: 10.1021/bm049685b] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]

Paiva LAF, Gurgel LA, De Sousa ET, Silveira ER, Silva RM, Santos FA, Rao VSN. Protective effect of Copaifera langsdorffii oleo-resin against acetic acid-induced colitis in rats. J Ethnopharmacol 2004;93:51-56. [PMID: 15182904 DOI: 10.1016/j.jep.2004.03.028] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2003] [Revised: 06/01/2003] [Accepted: 03/08/2004] [Indexed: 05/24/2023]

Santos FA, Silva RM, Campos AR, De Araújo RP, Lima Júnior RCP, Rao VSN. 1,8-cineole (eucalyptol), a monoterpene oxide attenuates the colonic damage in rats on acute TNBS-colitis. Food Chem Toxicol 2004;42:579-84. [PMID: 15019181 DOI: 10.1016/j.fct.2003.11.001] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2003] [Accepted: 10/07/2003] [Indexed: 11/29/2022]

Silva RM, Elvira C, Mano JF, San Román J, Reis RL. Influence of beta-radiation sterilisation in properties of new chitosan/soybean protein isolate membranes for guided bone regeneration. J Mater Sci Mater Med 2004;15:523-528. [PMID: 15332629 DOI: 10.1023/b:jmsm.0000021132.60475.79] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]

Menchaca-diaz J, Silva R, Figueiredo L, Bugni G, Watanabe A, Silva F, Koh I. Crit Care 2003;7:P28. [DOI: 10.1186/cc2224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Koh IHJ, Menchaca-Diaz JL, Bugni GM, Watanabe AY, Silva FJP, Ruiz-Silva M, Figueiredo LFP, Silva RM. The role of the mesenteric lymph on microcirculation injury during bacterial translocation. Crit Care 2003. [PMCID: PMC3301027 DOI: 10.1186/cc2225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open

Paiva LA, Gurgel LA, Silva RM, Tomé AR, Gramosa NV, Silveira ER, Santos FA, Rao VS. Anti-inflammatory effect of kaurenoic acid, a diterpene from Copaifera langsdorffii on acetic acid-induced colitis in rats. Vascul Pharmacol 2002;39:303-7. [PMID: 14567068 DOI: 10.1016/s1537-1891(03)00028-4] [Citation(s) in RCA: 89] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]

Schraibman V, Faintuch S, Silva RM, Buzzutti FI, Tajiki MH, Salomao R, Fagundes-Neto U, Morais MB, Koh IHJ. Tetracycline prophylaxis abrogates mortality following induction of inferior vena cava sepsis. Transplant Proc 2002;34:1009-10. [PMID: 12034284 DOI: 10.1016/s0041-1345(02)02692-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]

Faintuch S, Schraibman V, Silva RM, Buzzutti FI, Tajiki MH, Salomao R, Fagundes-Neto U, Morais MB, Koh IHJ. Beneficial effect of tetracycline prophylaxis in a sepsis model mimicking portal and systemic bacterial translocation routes. Transplant Proc 2002;34:1005-6. [PMID: 12034282 DOI: 10.1016/s0041-1345(02)02690-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]