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Abstract
Rodents are, taxonomically, the most species-rich mammalian order. They display a series of special genomic features including the highest karyotypic diversity, frequent occurrence of complex intraspecies chromosome variability, and a variety of unusual chromosomal sex determination mechanisms not encountered in other mammalian taxa. Rodents also have an abundance of cytochemically heterogeneous heterochromatin. There are also instances of extremely rapid karyotype reorganization and speciation not accompanied by significant genetic differentiation. All these peculiarities make it clear that a detailed study of rodent genomic evolution is indispensable to understand the mode and tempo of mammalian evolution. The aim of this review is to update the data obtained by classical and molecular cytogenetics as well as comparative genomics in order to outline the range of old and emerging problems that remain to be resolved.
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Affiliation(s)
- S A Romanenko
- Institute of Molecular and Cellular Biology, SB RAS, Novosibirsk, Russia.
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Biltueva L, Vorobieva N, Perelman P, Trifonov V, Volobouev V, Panov V, Ilyashenko V, Onischenko S, O'Brien P, Yang F, Ferguson-Smith M, Graphodatsky A. Karyotype evolution of eulipotyphla (insectivora): the genome homology of seven sorex species revealed by comparative chromosome painting and banding data. Cytogenet Genome Res 2011; 135:51-64. [PMID: 21912114 DOI: 10.1159/000330577] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/16/2011] [Indexed: 11/19/2022] Open
Abstract
The genus Sorex is one of the most successful genera of Eulipotyphla. Species of this genus are characterized by a striking chromosome variability including XY1Y2 sex chromosome systems and exceptional chromosomal polymorphisms within and between populations. To study chromosomal evolution of the genus in detail, we performed cross-species chromosome painting of 7 Sorex species with S. granarius and S. araneus whole-chromosome probes and found that the tundra shrew S. tundrensis has the most rearranged karyotype among these. We reconstructed robust phylogeny of the genus Sorex based on revealed conserved chromosomal segments and syntenic associations. About 16 rearrangements led to formation of 2 major Palearctic groups after their divergence from the common ancestor: the S. araneus group (10 fusions and 1 fission) and the S. minutus group (5 fusions). Further chromosomal evolution of the 12 species inside the groups, including 5 previously investigated species, was accompanied by multiple reshuffling events: 39 fusions, 20 centromere shifts and 10 fissions. The rate of chromosomal exchanges upon formation of the genus was close to the average rate for eutherians, but increased during recent (about 6-3 million years ago) speciation within Sorex. We propose that a plausible ancestral Sorex karyotype consists of 56 elements. It underwent 20 chromosome rearrangements from the boreoeutherian ancestor, with 14 chromosomes retaining the conserved state. The set of genus-specific chromosome signatures was drawn from the human (HSA)-shrew comparative map (HSA3/12/22, 8/19/3/21, 2/13, 3/18, 11/17, 12/15 and 1/12/22). The syntenic association HSA4/20, that was previously proposed as a common trait of all Eulipotyphla species, is shown here to be an apomorphic trait of S. araneus.
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Affiliation(s)
- L Biltueva
- Department of Molecular and Cellular Biology, Institute of Chemical Biology and Fundamental Medicine, SB RAS, Novosibirsk, Russia. bilar @ mcb.nsc.ru
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Hansmann T, Nanda I, Volobouev V, Yang F, Schartl M, Haaf T, Schmid M. Cross-species chromosome painting corroborates microchromosome fusion during karyotype evolution of birds. Cytogenet Genome Res 2010; 126:281-304. [PMID: 20068299 DOI: 10.1159/000251965] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/26/2009] [Indexed: 11/19/2022] Open
Abstract
The stone curlew, also known as thick-knee (Burhinus oedicnemus, BOE), represents a phylogenetically young species of the shorebirds (Charadriiformes) that exhibits one of the most atypical genome organizations known within the class of Aves, due to an extremely low diploid number (2n = 42) and only 6 pairs of microchromosomes in its complement. This distinct deviation from the 'typical' avian karyotype is attributed to repeated fusions of ancestral microchromosomes. In order to compare different species with this atypical avian karyotype and to investigate the chromosome rearrangement patterns, chromosome-specific painting probes representing the whole genome of the stone curlew were used to delineate chromosome homology between BOE and 5 species belonging to 5 different avian orders: herring gull (Charadriiformes), cockatiel (Psittaciformes), rock pigeon (Columbiformes), great gray owl (Strigiformes) and Eurasian coot (Gruiformes). Paints derived from the 20 BOE autosomes delimited 28 to 33 evolutionarily conserved segments in the karyotypes of the 5 species, similar to the number recognized by BOE paints in such a basal lineage as the chicken (28 conserved segments). This suggests a high degree of conservation in genome organization in birds. BOE paints also revealed some species-specific rearrangements. In particular, chromosomes BOE1-4 and 14, as well as to a large extent BOE5 and 6, showed conserved synteny with macrochromosomes, whereas homologous regions for BOE7-13 are found to be largely distributed on microchromosomes in the species investigated. Interestingly, the 6 pairs of BOE microchromosomes 15-20 appear to have undergone very few rearrangements in the 5 lineages investigated. Although the arrangements of BOE homologous segments on some chromosomes can be explained by complex fusions and inversions, the occurrence of homologous regions at multiple sites may point to fission of ancestral chromosomes in the karyotypes of the species investigated. However, the present results demonstrate that the ancestral microchromosomes most likely experienced fusion in the stone curlew lineage forming the medium-sized BOE chromosomes, while they have been conserved as microchromosomes in the other neoavian lineages.
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Affiliation(s)
- T Hansmann
- Department of a Human Genetics, University of Würzburg, Würzburg , Germany
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Volobouev V, Viegas-Páquignot E, Lombard M, Petter F, Duplantier JM, Dutrillaux B. Chromosomal evidence for a polytypic structure of Arvicanthis niloticus (Rodentia, Muridae). J ZOOL SYST EVOL RES 2009. [DOI: 10.1111/j.1439-0469.1988.tb00317.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Volobouev V, Lombard M, Tranier M, Dutrillaux B. Chromosome-banding study in Gerbillinae (Rodentia). I. Comparative analysis of Gerbillus poecilops, G. henleyi and G. nanus. J ZOOL SYST EVOL RES 2009. [DOI: 10.1111/j.1439-0469.1995.tb00209.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Volobouev V, Catzeflis F. Mechanisms of chromosomal evolution in three European species of the Sorex araneus-arcticus group (Insectivora: Soricidae). J ZOOL SYST EVOL RES 2009. [DOI: 10.1111/j.1439-0469.1989.tb00347.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Volobouev V, Lombard M, Tranier M, Dutrillaux B. Chromosome-banding study in Gerbillinae (Rodentia). I. Comparative analysis of Gerbillus poecilops, G. henleyi and G. nanus. J ZOOL SYST EVOL RES 2009. [DOI: 10.1111/j.1439-0469.1995.tb00956.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Denys C, Lalis A, Aniskin V, Kourouma F, Soropogui B, Sylla O, Doré A, Koulemou K, Beavogui ZB, Sylla M, Camara A, Camara AB, Camara AC, Kan SK, Volobouev V, Camara C, Koivogui L, Bernard AK. New data on the taxonomy and distribution of Rodentia (Mammalia) from the western and coastal regions of Guinea West Africa. ACTA ACUST UNITED AC 2009. [DOI: 10.1080/11250000802616817] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Volobouev V, Aniskin VM, Sicard B, Dobigny G, Granjon L. Systematics and phylogeny of West African gerbils of the genus Gerbilliscus (Muridae: Gerbillinae) inferred from comparative G- and C-banding chromosomal analyses. Cytogenet Genome Res 2007; 116:269-81. [PMID: 17431325 DOI: 10.1159/000100411] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2006] [Accepted: 12/15/2006] [Indexed: 11/19/2022] Open
Abstract
Comparative analysis of the G- and C-banding patterns in six morphologically similar species of the genus Gerbilliscus(G. gambianus, G. guineae, G. kempi, Gerbilliscus sp., G. robustus and G. leucogaster) and one belonging to the genus Gerbillurus (G. tytonis) from 27 West, East and South African localities was carried out. Our study revealed that 17 rearrangements comprising seven fissions, five translocations and five inversions occurred in the evolution of this group, with 1-13 rearrangements differentiating the various species. In addition the unusually large sex chromosomes appear to be species-specific as judged by size and morphology reflecting structural rearrangements as well as the variable presence of a large amount of C-heterochromatin found in each species at a particular chromosomal location. These karyotypic features allow us to recognize five distinct species in West Africa (compared to the two recognized in recent taxonomic lists) and to roughly delimit their geographical distributions. The pattern of phylogenetic relationships inferred from a cladistic analysis of the chromosomal data is in good agreement with recent molecular phylogenetic studies that recognize a West African species group within the genus Gerbilliscus, and the monophyly of both Gerbilliscus and Gerbillurus.
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Affiliation(s)
- V Volobouev
- Muséum National d'Histoire Naturelle, UMR 5202 Origine, Structure et Evolution de la Biodiversité, Paris, France.
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Nanda I, Karl E, Volobouev V, Griffin DK, Schartl M, Schmid M. Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae). Cytogenet Genome Res 2006; 112:286-95. [PMID: 16484785 DOI: 10.1159/000089883] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2005] [Accepted: 08/10/2005] [Indexed: 11/19/2022] Open
Abstract
The karyotypes of most birds consist of a small number of macrochromosomes and numerous microchromosomes. Intriguingly, most accipitrids which include hawks, eagles, kites, and Old World vultures (Falconiformes) show a sharp contrast to this basic avian karyotype. They exhibit strikingly few microchromosomes and appear to have been drastically restructured during evolution. Chromosome paints specific to the chicken (GGA) macrochromosomes 1-10 were hybridized to metaphase spreads of three species of Old World vultures (Gyps rueppelli, Gyps fulvus, Gypaetus barbatus). Paints of GGA chromosomes 6-10 hybridize only to single chromosomes or large chromosome segments, illustrating the existence of high chromosome homology. In contrast, paints of the large macrochromosomes 1-5 show split hybridization signals on the chromosomes of the accipitrids, disclosing excessive chromosome rearrangements which is in clear contrast to the high degree of chromosome conservation substantiated from comparative chromosome painting in other birds. Furthermore, the GGA chromosome paint hybridization patterns reveal remarkable interchromosomal conservation among the two species of the genus Gyps.
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Affiliation(s)
- I Nanda
- Department of Human Genetics, University of Würzburg, Würzburg, Germany
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Aniskin VM, Benazzou T, Biltueva L, Dobigny G, Granjon L, Volobouev V. Unusually extensive karyotype reorganization in four congeneric Gerbillus species (Muridae: Gerbillinae). Cytogenet Genome Res 2006; 112:131-40. [PMID: 16276102 DOI: 10.1159/000087525] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2004] [Accepted: 06/01/2005] [Indexed: 11/19/2022] Open
Abstract
Comparative analysis of the G- and C-banding patterns in four morphologically poorly differentiated Gerbillus species (G. pyramidum, G. perpallidus, G. tarabuli and G. occiduus) was carried out. These gerbils have similar karyotype morphology with 2n and NF equal to 38/76, 40/76, 40/78 and 40/80, respectively. Our study revealed that possibly 70 Robertsonian (Rb) fusions, two pericentric inversions, one tandem translocation and at least 13 non-identified rearrangements have occurred during the karyotypic evolution of these species. The number of chromosomal changes by which any of these species differ from each other ranges from 33 to 49. One Rb fusion was common to two of the species, with only a single autosome-gonosome translocation shared by all four, suggesting a monophyletic origin of these karyotypically highly divergent species. Based on the chromosomal data obtained here, the systematic and geographic implications for these North African species are also discussed.
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Affiliation(s)
- V M Aniskin
- Severtsov Institut of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
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Dobigny G, Aniskin V, Granjon L, Cornette R, Volobouev V. Recent radiation in West African Taterillus (Rodentia, Gerbillinae): the concerted role of chromosome and climatic changes. Heredity (Edinb) 2006; 95:358-68. [PMID: 16106262 DOI: 10.1038/sj.hdy.6800730] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
West African gerbils of the genus Taterillus constitute a complex of seven sibling species distributed from sudano-guinean to saharo-sahelian regions. They display radically rearranged karyotypes despite low genic divergence and a very recent differentiation, that is, within the last 0.4 Myr for the six most derived species. We here provide a comparison of the seven specific karyotypes and perform a cladistic analysis using chromosomal rearrangements character states. When a posteriori polarized mutations were mapped onto the phylogenetic tree, 38 rearrangements were identified as fixed during the evolution of these rodents. This makes Taterillus one of the most striking examples of accelerated chromosomal evolution within placental mammals. Taking into account the types of chromosomal changes involved, divergence times between lineages, genetic distances, as well as reassessed geographic distributions, we suggest that (1) speciation in West African Taterillus was driven by chromosomal changes, and (2) the paleoclimatic oscillations of the Sahara desert have played a major role in their evolution. In particular, elevated plasticity of the Taterillus genome, as suggested by the patterns observed for some repetitive elements, would have led to a higher probability of mutation. We hypothesize that the process underpinning cladogenesis most probably involved highly underdominant genomic rearrangements that were fixed following pronounced populational bottlenecks resulting from drastic climatic and subsequent environmental changes. Major African rivers formed significant barriers to dispersal, limiting expansion during the more moist and so favorable periods. This scenario would explain the current parapatric species distributions and their relationship to the West African hydrographic features.
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Affiliation(s)
- G Dobigny
- Muséum National d'Histoire Naturelle, Laboratoire Origine, Structure et Evolution de la Biodiversité, FRE CNRS 2695, 55, rue Buffon, Paris F75005, France.
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13
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Dobigny G, Yang F, O'Brien PCM, Volobouev V, Kovács A, Pieczarka JC, Ferguson-Smith MA, Robinson TJ. Low rate of genomic repatterning in Xenarthra inferred from chromosome painting data. Chromosome Res 2005; 13:651-63. [PMID: 16235115 DOI: 10.1007/s10577-005-1002-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2005] [Accepted: 07/18/2005] [Indexed: 10/25/2022]
Abstract
Comparative cytogenetic studies on Xenarthra, one of the most basal mammalian clades in the Placentalia, are virtually absent, being restricted largely to descriptions of conventional karyotypes and diploid numbers. We present a molecular cytogenetic comparison of chromosomes from the two-toed (Choloepus didactylus, 2n = 65) and three-toed sloth species (Bradypus tridactylus, 2n = 52), an anteater (Tamandua tetradactyla, 2n = 54) which, together with some data on the six-banded armadillo (Euphractus sexcinctus, 2n = 58), collectively represent all the major xenarthran lineages. Our results, based on interspecific chromosome painting using flow-sorted two-toed sloth chromosomes as painting probes, show the sloth species to be karyotypically closely related but markedly different from the anteater. We also test the synteny disruptions and segmental associations identified within Pilosa (anteaters and sloths) against the chromosomes of the six-banded armadillo as outgroup taxon. We could thus polarize the 35 non-ambiguously identified chromosomal changes characterizing the evolution of the anteater and sloth genomes and map these to a published sequence-based phylogeny for the group. These data suggest a low rate of genomic repatterning when placed in the context of divergence estimates based on molecular and fossil data. Finally, our results provide a glimpse of a likely ancestral karyotype for the extant Xenarthra, a pivotal group for understanding eutherian genome evolution.
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Affiliation(s)
- G Dobigny
- Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa
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Coullin P, Bed'Hom B, Candelier JJ, Vettese D, Maucolin S, Moulin S, Galkina SA, Bernheim A, Volobouev V. Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds. Chromosome Res 2005; 13:665-73. [PMID: 16235116 DOI: 10.1007/s10577-005-1004-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2005] [Accepted: 07/04/2005] [Indexed: 11/28/2022]
Abstract
Chicken repeat 1 (CR1) belongs to the non-long repeat class of retrotransposons. Nearly 100000 repeats interspersed in the chicken genome are subdivided into at least six distinct subfamilies, each 300 bp long and all sharing substantial sequence similarity. CR1-like elements were found in genomes from invertebrates to mammals, suggesting their importance for genome structure and/or function. Moreover, numerous data support the hypothesis of their implication in regulation of gene expression. So, the chromosomal distribution of these CR1 sequences in vertebrates is of great interest to improve our knowledge about the genome structure, function and evolution. A comparison of the cytogenetic distribution of CR1 sequences was performed by PRINS using consensus chicken primers on the chromosomes of chicken and species of several bird orders: Galliformes, Anseriformes, Passeriformes and Falconiformes. The study revealed that CR1 repeats are spread over nearly all chicken chromosomes with a higher density on the macrochromosomes and in particular with hot spots on subtelomeric regions of chromosome 1, 2, 3q, 4q, 5q. Their distribution on the macrochromosomes forms a kind of banding pattern, which was not systematically matched with R- or G-banding. This banding pattern appears to be conserved on the chromosomes of the Galliformes studied, irrespective of their karyotypes, rearranged or not. CR1 primers also show similar signals on the chromosomes of birds phylogenetically more distant (Anseriformes, Passeriformes and Falconiformes). This fact confirms the importance of these sequences at the large scale of bird evolution and in the chromosomal structure. The location of CR1 sequences, and in particular of the hot spots, mainly within the richest CG areas are in conformity with the data on an epigenetic role of these highly conserved sequences.
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Affiliation(s)
- Philippe Coullin
- UMR 8125, Cytogénétique et génomique des cancers, Institut Gustave Roussy (IGR), F94807 Villejuif, Cedex, France.
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Dobigny G, Ozouf-Costaz C, Bonillo C, Volobouev V. Viability of X-autosome translocations in mammals: an epigenomic hypothesis from a rodent case-study. Chromosoma 2004; 113:34-41. [PMID: 15243753 DOI: 10.1007/s00412-004-0292-6] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2004] [Revised: 04/27/2004] [Accepted: 05/11/2004] [Indexed: 11/30/2022]
Abstract
X-autosome translocations are highly deleterious chromosomal rearrangements due to meiotic disruption, the effects of X-inactivation on the autosome, and the necessity of maintaining different replication timing patterns between the two segments. In spite of this, X-autosome translocations are not uncommon. We here focus on the genus Taterillus (Rodentia, Gerbillinae) which provides two sister lineages differing by two autosome-gonosome translocations. Despite the recent and dramatic chromosomal repatterning characterising these lineages, the X-autosome translocated species all display intercalary heterochromatic blocks (IHBs) between the autosomal and the ancestral sexual segments. These blocks, composed of highly amplified telomeric repeats and rDNA clusters, are not observed on the chromosomes of the non-translocated species, nor the Y1 and Y2 of the translocated species. Such IHBs are found in all mammals documented for X-autosome translocation. We propose an epigenomic hypothesis which explains the viability of X-autosome translocations in mammals. This posits that constitutive heterochromatin is probably selected for in X-autosome translocations since it may (1) prevent facultative heterochromatinization of the inactivated X from spreading to the autosomal part, and (2) allow for the independent regulation of replication timing of the sex and autosomal segments.
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Affiliation(s)
- G Dobigny
- Laboratoire Origine, Structure et Evolution de la Biodiversité, Muséum National d'Histoire Naturelle, 55, rue Buffon, 75005 Paris, France.
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Dobigny G, Ozouf-Costaz C, Bonillo C, Volobouev V. Evolution of rRNA gene clusters and telomeric repeats during explosive genome repatterning in TATERILLUS X (Rodentia, Gerbillinae). Cytogenet Genome Res 2004; 103:94-103. [PMID: 15004471 DOI: 10.1159/000076296] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2003] [Accepted: 08/14/2003] [Indexed: 11/19/2022] Open
Abstract
A survey of 28S and 5S rRNA gene clusters, and telomeric repeats was performed using single and double FISH in the Taterillus genus (Rodentia, Muridae, Gerbillinae). Taterillus was previously demonstrated to have undergone a very recent and extensive chromosomal evolution. Our FISH results demonstrate that rRNA genes can vary in location and number irrespective of the phylogenetic relationships. Telomeric repeats were detected in pericentromeric and interstitial regions of several chromosomes, thus providing nonambiguous evolutionary footprints of Robertsonian and tandem translocation events. These footprints are discussed in reference to the molecular process of these karyotypical changes. Also, examples of colocation of rDNA clusters and telomeric repeats lend support to their possible involvement in nucleolus formation. Finally, the presence of rRNA genes, and the extensive amplification of telomeric repeats at specific loci within a double X-autosome translocated element which were not observed on the homologous Y1 and Y2, served as basis for an epigenomic hypothesis on X-autosome translocation viability in mammals.
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Affiliation(s)
- G Dobigny
- Laboratoire Origine, Structure et Evolution de la Biodiversité, Muséum National d'Histoire Naturelle, Paris, France
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Abstract
In spite of uncertainty about the biochemical processes involved, silver staining is a widely used technique for assessing the locations of active NORs in eukaryotic genomes in general, and in mammalian genomes in particular. However, following a previous study of hedgehog chromosomes, we present here a second example from two gerbil species (Rodentia, Muridae), which have several clear Ag-positive signals that do not correspond to 28S rDNA clusters. Although this pattern may be characteristic of particular genomes displaying unusual heterochromatic features, our study casts doubt upon the reliability and universality of Ag-staining for detecting active NORs.
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Affiliation(s)
- G Dobigny
- Laboratoire Mammifères and Oiseaux, Muséum National d'Histoire Naturelle, Paris, France.
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Dobigny G, Aniskin V, Volobouev V. Explosive chromosome evolution and speciation in the gerbil genus Taterillus (Rodentia, Gerbillinae): a case of two new cryptic species. Cytogenet Genome Res 2003; 96:117-24. [PMID: 12438787 DOI: 10.1159/000063044] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
The five morphologically sibling gerbil species of the genus Taterillus in West Africa were first identified from karyotypes. These species possess an XX/XY(1)Y(2) sex-chromosome system and are characterized by significant karyotypic reorganization, thus making them a suitable model for studying the role of chromosomal rearrangements in the speciation process. We present here a description of two new cytotypes, Taterillus sp. 1 and Taterillus sp. 2, from the Lake Chad area, the former having a 2n = 22/23, NFa = 40, and the latter 2n = 24/25, NFa = 44. Comparison of their G- and C- banding patterns with those of T. pygargus (2n = 22/23, NFa = 38/40), examined in an earlier paper, revealed that all three species differ from each other by 7 to 11 chromosomal rearrangements, comprising tandem translocations, pericentric inversions, and Robertsonian metacentrics displaying monobrachial homology. Meiotic configurations formed in potential hybrids among any of these three forms would consist of complex rings and chains, alone or in combination, resulting, as expected, in a significant disruption of gametogenesis. These results provide support for assigning Taterillus sp. 1 and Taterillus sp. 2 to two different biological species, which, as demonstrated by our preliminary molecular studies, would have emerged recently. Possible factors responsible for the rapid karyotypic evolution and speciation in this West African gerbil complex are discussed.
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Affiliation(s)
- G Dobigny
- Laboratoire Mammifères et Oiseaux, Muséum National d'Histoire Naturelle, Paris, France.
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Thévenon S, Claro F, Bonnet A, Volobouev V. Karyotype identity of two subspecies of Eld's deer [Cervus eldi (Cervinae, Artiodactyla)] and its consequences for conservation. J Hered 2000; 91:402-5. [PMID: 10994709 DOI: 10.1093/jhered/91.5.402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Among the three subspecies generally recognized within the Eld's deer (Cervus eldi)--C. e. eldi, C. e. thamin, and C. e. siamensis--C. e. siamensis is considered to be particularly endangered following its disappearance from a major portion of its original range. The only captive breeding population of this subspecies is in the zoological parks at the Paris Museum of Natural History. Taking into account its low effective population size (Ne = 7) and the increasing levels of inbreeding, the continued breeding of this "micropopulation" in isolation from closely related subspecies and in particular from C. e. thamin, which is much more common in zoos as well as in the nature, is questioned. As an initial step in determining if crosses between these subspecies could be performed without risk of outbreeding depression due, in part, to gross differences in their karyotypes, a comparative chromosome banding analysis (RBG-bands) of C. e. siamensis and C. e. thamin was undertaken. No chromosomal differences were identified between the taxa at the level of resolution obtained. The study suggests that, at least from a karyotypic perspective, no obvious differences delimit the two subspecies, and hybridization between endangered C. e. siamensis and C. e. thamin is not likely to lead to impaired fertility in hybrid animals.
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Affiliation(s)
- S Thévenon
- Parc zoologique de Paris, Muséum National d'Histoire Naturelle, Laboratoire de conservation des espèces animales, France
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Ducroz JF, Granjon L, Lombard M, Volobouev V. Comparative chromosome analysis (R- and C-bands) of two South African murid species, Lemniscomys rosalia and Rhabdomys pumilio (Rodentia, murinae). Cytogenet Cell Genet 2000; 87:69-74. [PMID: 10640814 DOI: 10.1159/000015394] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
We carried out a comparative chromosome analysis (R- and C-bands) on two South African murid rodent species, Lemniscomys rosalia and Rhabdomys pumilio, whose banded karyotypes are reported here for the first time. The study revealed that, in spite of minor differences in diploid number and the number of autosomal arms (48 vs. 46 and 58 vs. 60, respectively), these species differ by at least 10 structural rearrangements, comprising seven Robertsonian translocations (two of which share monobrachial homology), two tandem translocations, and one pericentric inversion. Despite the high level of chromosomal differentiation observed, almost complete homologous banding patterns were detected between the two species. The present study therefore strengthens the hypothesis about the close phylogenetic affinities between L. rosalia and R. pumilio and their belonging to a set of genera referred to as "arvicanthine" rodents.
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Affiliation(s)
- J F Ducroz
- Laboratoire de Zoologie, Mammifères et Oiseaux, Muséum National d'Histoire Naturelle, Paris, France
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Pons JM, Volobouev V, Ducroz JF, Tillier A, Reudet D. Is the Guadeloupean racoon (Procyon minor) really an endemic species? New insights from molecular and chromosomal analyses. J ZOOL SYST EVOL RES 1999. [DOI: 10.1046/j.1439-0469.1999.372109.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Courant F, Brunet-Lecomte P, Volobouev V, Chaline J, Quéré JP, Nadachowski A, Montuire S, Bao G, Viriot L, Rausch R, Erbajeva M, Shi D, Giraudoux P. Karyological and dental identification of Microtus limnophilus in a large focus of alveolar echinococcosis (Gansu, China). C R Acad Sci III 1999; 322:473-80. [PMID: 10457599 DOI: 10.1016/s0764-4469(99)80097-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
A study of voles (Arvicolidae, Rodentia) from Gansu (China) designed to identify a potential host of Echinococcus multilocularis, responsible for human alveolar echinococcosis, leads to a general analysis of Microtus limnophilus population karyotypes, M1 of M. oeconomus populations from all of Eurasia and of M. limnophilus of Mongolia. The Microtus of Gansu belonging to the nominal subspecies M. limnophilus limnophilus (2n = 38; NF = 58) differs markedly in size and shape of M1 from the M. limnophilus of Mongolia, which must therefore be considered as a new subspecies M. limnophilus of malygini nov. ssp. (2n = 38; NF = 60) and the M. oeconomus of Mongolia should be ranked as M. oeconomus kharanurensis nov. ssp. (2n = 30; NF = 60).
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Affiliation(s)
- F Courant
- UMR CNRS 5561, université de Bourgogne, Centre des sciences de la Terre, Dijon, France.
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Ducroz JF, Volobouev V, Granjon L. A molecular perspective on the systematics and evolution of the genus Arvicanthis (Rodentia, Muridae): inferences from complete cytochrome b gene sequences. Mol Phylogenet Evol 1998; 10:104-17. [PMID: 9751921 DOI: 10.1006/mpev.1997.0477] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Systematics of the genus Arvicanthis, the African unstriped grass rat, are somewhat controversial. Most recent taxonomic revisions list five to six species but the definition of some of these (Arvicanthis dembeensis, Arvicanthis nairobae, and Arvicanthis niloticus) is uncertain. The complete mitochondrial cytochrome b gene (1140 bp) was sequenced for 20 specimens from throughout the range of the genus to determine the intrageneric genetic structure, construct a molecular phylogeny, and evaluate classical taxonomies. Neighbor-joining and maximum parsimony analyses yielded identical phylogenetic trees that identify two major lineages: the first one (1) is composed of specimens usually referred to A. niloticus but representing several distinct species, and the other (2) is a complex including "true" A. niloticus from Egypt and northern West Africa as well as Arvicanthis abyssinicus, Arvicanthis dembeensis, and Arvicanthis somalicus. An analysis on a 357-bp fragment of the cytochrome b including published data on A. nairobae indicates that this taxon is part of clade (1). Calibration of the number of 3rd position transversion changes with the murid fossil record suggests that clades (1) and (2) diverged approximately 5 Myr ago. Arvicanthis niloticus as currently recognized is a paraphyletic association and this name should be restricted to the Egyptian and northern West African sample. We also suggest referring to A. dembeensis as A. niloticus, as our cytochrome b data do not support its recognition as a distinct species. Clade (1) is subdivided in three lineages, geographically corresponding to southern West, Central, and East Africa. The high genetic divergence detected between the Central African lineage and the other two lineages suggests that they probably represent separate species. Clade (2) experienced rapid cladogenetic events during the late Pliocene, with the A. somalicus lineage being the first to emerge, followed by the ancestor of A. abyssinicus and A. blicki. This period was characterized by significant climatic and environmental changes, such as the extension of open habitats, which might have provided a stimulus for speciation in this savanna-dwelling genus. Confrontation of our molecular results with chromosomal data shows a high degree of congruence between the two datasets.
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Affiliation(s)
- J F Ducroz
- Laboratoire de Zoologie, Mammifères et Oiseaux, Muséum National d'Histoire Naturelle, Paris, France
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Ducroz JF, Granjon L, Chevret P, Duplantier JM, Lombard M, Volobouev V. Characterization of two distinct species ofArvicanthis(Rodentia: Muridae) in West Africa: cytogenetic, molecular and reproductive evidence. J Zool (1987) 1997. [DOI: 10.1111/j.1469-7998.1997.tb05743.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Volobouev V, Gautun JC, Sicard B, Tranier M. The chromosome complement of Acomys spp. (Rodentia, Muridae) from Oursi, Burkina Faso--the ancestral karyotype of the cahirinus-dimidiatus group? Chromosome Res 1996; 4:526-30. [PMID: 8939364 DOI: 10.1007/bf02261780] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
We present here data on chromosome banding analysis (R- and C-bands) of Acomys sp. (Rodentia, Muridae) from Oursi, Burkina Faso, characterized by 2n = FN = 68 and comparison of its banding patterns with those of Acomys dimidiatus from Saudi Arabia (2n = 38, FN = 70), studied previously. The study revealed complete homology between acrocentric chromosomes of Acomys sp. and chromosome arms of 16 pairs of metacentric and two pairs of acrocentric chromosomes of A. dimidiatus. In addition to monobrachial homology, one tandem translocation accompanied by a centromeric shift was identified in the karyotype of the latter species. The data obtained show that karyotypes of all the species of the Acomys cahirinus-dimidiatus group studied previously may be derived from that of Acomys sp. from Oursl by means of numerous non-homologous Rb translocations and 1-2 tandem transiocations, and thus its karyotype may be considered as ancestral for the cahirinus-dimidiatus group.
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Affiliation(s)
- V Volobouev
- Institut Curie, Section de Biologie, Paris, France.
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Volobouev V, Granjon L. A finding of the XX/XY1Y2 sex-chromosome system in Taterillus arenarius (Gerbillinae, Rodentia) and its phylogenetic implications. Cytogenet Cell Genet 1996; 75:45-8. [PMID: 8995488 DOI: 10.1159/000134455] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
A chromosome banding study (R- and C-bands) of a male Taterillus arenarius (Rodentia, Gerbillinae) specimen from Mauritania revealed the presence of an XX/XY1Y2 sex-chromosome system in the karyotype, as found previously in three other congeneric species. This finding allowed us to resolve the phylogenetic affinities of this species within the genus and to propose an evolutionary scenario leading to the formation of the species with an XX/XY1Y2 sex-chromosome system. A review of chromosome data in Taterillus suggests that there may be more species in the genus than hitherto recognized.
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Affiliation(s)
- V Volobouev
- Institut Curie, Section de Biologie, and Muséum National d'Histoire Naturelle, Paris, France.
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Volobouev V, Vogt N, Viegas-Péquignot E, Malfoy B, Dutrillaux B. Characterization and chromosomal location of two repeated DNAs in three Gerbillus species. Chromosoma 1995; 104:252-9. [PMID: 8565701 DOI: 10.1007/bf00352256] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Two tandemly repeated DNA sequences of Gerbillus nigeriae (Rodentia) (GN1 and GN2) were isolated and characterized. Both share a 36bp repeated unit, which includes a 20bp motif also found in primate alphoid and other repeated DNAs. The localization of GN1 and GN2 sequences on metaphase chromosomes of three Gerbillus species, G. nigeriae, G. aureus and G. nanus, was studied by fluorescence in situ hybridization (FISH). In the G. nigeriae and G. aureus karyotypes, which were shown to possess large amounts of heterochromatin and to have undergone multiple rearrangements during evolution, both GN1 and GN2 sequences were observed at various chromosomal sites: centromeric, telomeric and intercalary. In contrast, the karyotypically stable G. nanus, which does not possess large amounts of heterochromatin and seems to be a more ancestral species, possesses only GN1 sequences, localized in the juxtacentromeric regions.
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Affiliation(s)
- V Volobouev
- Institut Curie-CNRS UMR 147, 26, rue d Ulm, F-75231 Paris Cedex 05, France
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Rumpler Y, Gabriel-Robez O, Volobouev V, Yu W, Rasamimanana P, de Perdigo A. Male sterility and double heterozygosity for chromosomal inversion. Cytogenet Cell Genet 1995; 69:66-70. [PMID: 7835090 DOI: 10.1159/000133940] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
A meiotic analysis has been carried out on male mice heterozygous for one of two inversions in Chromosome 2, In(2)5Rk and In(2)2H, as well as on double heterozygotes for these two overlapping inversions. Electron microscopic observation of synaptonemal complexes revealed that heterosynapsis had occurred in a large number of spermatocytes, producing a small number of cells with an inversion loop. Heterozygous carriers of a single inversion loop reproduced quite normally, whereas doubly heterozygous carriers of a double loop showed a reduction in spermatogenesis. These data shed new light on the role of inversions in speciation.
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Affiliation(s)
- Y Rumpler
- Université Louis Pasteur, Faculté de Médecine, Institut d'Embryologie, Strasbourg, France
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Volobouev V, Pasteur G, Ineich I, Dutrillaux B. Chromosomal evidence for a hybrid origin of diploid parthenogenetic females from the unisexual-bisexual Lepidodactylus lugubris complex (Reptilia, Gekkonidae). Cytogenet Cell Genet 1993; 63:194-9. [PMID: 8485997 DOI: 10.1159/000133533] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Chromosome banding analysis of seven diploid parthenogenetic females from Polynesian and Southeast Asian populations of the unisexual-bisexual Lepidodactylus lugubris complex (Reptilia, Gekkonidae) showed that the unisexual karyotype consists of two different haploid sets. Similar analysis of an L. lugubris male from a bisexually reproducing population revealed two identical chromosome complements, the banding pattern generally matching that of the females, although many chromosomes were obviously different. These observations suggest that the gonochoristic males belong to a taxon related to the parthenogenetic female taxon but are not a direct ancestor of the latter. The data also offer strong evidence for a hybrid origin of diploid parthenogenetic females in L. lugubris and suggest that a high degree of chromosomal heterogeneity may be the leading reason for the evolutionary selection of a modified meiotic process in this species, allowing production of unreduced oocytes and, consequently, of a unisexual mode of reproduction.
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Affiliation(s)
- V Volobouev
- Structure et Mutagenèse Chromosomiques, Institut Curie, Paris, France
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Abstract
Incorporation of 5-bromo-2'-deoxyuridine (BrdU) in prometaphasic chromosomes allows active from inactivated X chromosomes in female mammalian cells to be distinguished. We have applied the technique to the all-female, chromosomally homomorphic gecko Lepidodactylus lugubris. Similar differences to those obtained between the two female sex chromosomes of mammals are observed in the patterns of chromosome pair 1. It is argued that this is more likely to reflect incipient ZW heterogamety than female (XX) homogamety.
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Affiliation(s)
- V Volobouev
- Laboratoire de Génétique Ecologique, Ecole Pratique des Hautes Etudes, Montpellier, France
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