1
|
Elberling F, Spulber S, Bose R, Keung HY, Ahola V, Zheng Z, Ceccatelli S. Sex Differences in Long-term Outcome of Prenatal Exposure to Excess Glucocorticoids-Implications for Development of Psychiatric Disorders. Mol Neurobiol 2023; 60:7346-7361. [PMID: 37561236 PMCID: PMC10657788 DOI: 10.1007/s12035-023-03522-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 07/18/2023] [Indexed: 08/11/2023]
Abstract
Exposure to prenatal insults, such as excess glucocorticoids (GC), may lead to pathological outcomes, including neuropsychiatric disorders. The aim of the present study was to investigate the long-term effects of in utero exposure to the synthetic GC analog dexamethasone (Dex) in adult female offspring. We monitored spontaneous activity in the home cage under a constant 12 h/12 h light/dark cycle, as well as the changes following a 6-h advance of dark onset (phase shift). For comparison, we re-analysed data previously recorded in males. Dex-exposed females were spontaneously more active, and the activity onset re-entrained slower than in controls. In contrast, Dex-exposed males were less active, and the activity onset re-entrained faster than in controls. Following the phase shift, control females displayed a transient reorganisation of behaviour in light and virtually no change in dark, while Dex-exposed females showed limited variations from baseline in both light and dark, suggesting weaker photic entrainment. Next, we ran bulk RNA-sequencing in the suprachiasmatic nucleus (SCN) of Dex and control females. SPIA pathway analysis of ~ 2300 differentially expressed genes identified significantly downregulated dopamine signalling, and upregulated glutamate and GABA signalling. We selected a set of candidate genes matching the behaviour alterations and found consistent differential regulation for ~ 73% of tested genes in SCN and hippocampus tissue samples. Taken together, our data highlight sex differences in the outcome of prenatal exposure to excess GC in adult mice: in contrast to depression-like behaviour in males, the phenotype in females, defined by behaviour and differential gene expression, is consistent with ADHD models.
Collapse
Affiliation(s)
- Frederik Elberling
- Department of Neuroscience, Karolinska Institutet, Biomedicum, Solnavägen 9, 171 77, Stockholm, Sweden
| | - Stefan Spulber
- Department of Neuroscience, Karolinska Institutet, Biomedicum, Solnavägen 9, 171 77, Stockholm, Sweden.
| | - Raj Bose
- Department of Neuroscience, Karolinska Institutet, Biomedicum, Solnavägen 9, 171 77, Stockholm, Sweden
| | - Hoi Yee Keung
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, 15W Science and Technology W Ave, Sha Tin, Hong Kong Special Administrative Region, People's Republic of China
| | - Virpi Ahola
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, 15W Science and Technology W Ave, Sha Tin, Hong Kong Special Administrative Region, People's Republic of China
| | - Zongli Zheng
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, 15W Science and Technology W Ave, Sha Tin, Hong Kong Special Administrative Region, People's Republic of China
| | - Sandra Ceccatelli
- Department of Neuroscience, Karolinska Institutet, Biomedicum, Solnavägen 9, 171 77, Stockholm, Sweden
| |
Collapse
|
2
|
Chan CH, Lam YY, Wong N, Geng L, Zhang J, Ahola V, Zare A, Li RA, Lanner F, Keung W, Cheung YF. Abnormal developmental trajectory and vulnerability to cardiac arrhythmias in tetralogy of Fallot with DiGeorge syndrome. Commun Biol 2023; 6:969. [PMID: 37740059 PMCID: PMC10516936 DOI: 10.1038/s42003-023-05344-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 09/11/2023] [Indexed: 09/24/2023] Open
Abstract
Tetralogy of Fallot (TOF) is the most common cyanotic congenital heart disease. Ventricular dysfunction and cardiac arrhythmias are well-documented complications in patients with repaired TOF. Whether intrinsic abnormalities exist in TOF cardiomyocytes is unknown. We establish human induced pluripotent stem cells (hiPSCs) from TOF patients with and without DiGeorge (DG) syndrome, the latter being the most commonly associated syndromal association of TOF. TOF-DG hiPSC-derived cardiomyocytes (hiPSC-CMs) show impaired ventricular specification, downregulated cardiac gene expression and upregulated neural gene expression. Transcriptomic profiling of the in vitro cardiac progenitors reveals early bifurcation, as marked by ectopic RGS13 expression, in the trajectory of TOF-DG-hiPSC cardiac differentiation. Functional assessments further reveal increased arrhythmogenicity in TOF-DG-hiPSC-CMs. These findings are found only in the TOF-DG but not TOF-with no DG (ND) patient-derived hiPSC-CMs and cardiac progenitors (CPs), which have implications on the worse clinical outcomes of TOF-DG patients.
Collapse
Affiliation(s)
- Chun-Ho Chan
- Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China
| | - Yin-Yu Lam
- Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China
| | - Nicodemus Wong
- Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China
| | - Lin Geng
- Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China
| | - Jilin Zhang
- Ming Wai Lau Centre for Reparative Medicine, Hong Kong node, Karolinska Institutet, Units 608-613 Building 15 Science Park, Hong Kong, China
| | - Virpi Ahola
- Ming Wai Lau Centre for Reparative Medicine, Hong Kong node, Karolinska Institutet, Units 608-613 Building 15 Science Park, Hong Kong, China
| | - Aman Zare
- Ming Wai Lau Centre for Reparative Medicine, Hong Kong node, Karolinska Institutet, Units 608-613 Building 15 Science Park, Hong Kong, China
| | - Ronald Adolphus Li
- Ming Wai Lau Centre for Reparative Medicine, Hong Kong node, Karolinska Institutet, Units 608-613 Building 15 Science Park, Hong Kong, China
- Dr. Li Dak-Sum Research Centre, The University of Hong Kong - Karolinska Institutet Collaboration in Regenerative Medicine, The University of Hong Kong, Hong Kong, China
| | - Fredrik Lanner
- Ming Wai Lau Centre for Reparative Medicine, Stockholm node, Karolinska Institutet, Solnavagen 9, 17165, Stockholm, Sweden
- Department of Clinical Sciences, Intervention and Technology, Karolinska Institutet, Stockholm, Sweden
- Division of Obstetrics and Gynecology, Karolinska Universitetssjukhuset, Stockholm, Sweden
| | - Wendy Keung
- Dr. Li Dak-Sum Research Centre, The University of Hong Kong - Karolinska Institutet Collaboration in Regenerative Medicine, The University of Hong Kong, Hong Kong, China
| | - Yiu-Fai Cheung
- Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
- Ming Wai Lau Centre for Reparative Medicine, Hong Kong node, Karolinska Institutet, Units 608-613 Building 15 Science Park, Hong Kong, China.
- Dr. Li Dak-Sum Research Centre, The University of Hong Kong - Karolinska Institutet Collaboration in Regenerative Medicine, The University of Hong Kong, Hong Kong, China.
| |
Collapse
|
3
|
Yang J, Wang D, Liu H, Wang L, Jin L, Ahola V, Xu C, Wang R. Three amino acid substitutions contributing to thermostability of phosphoglucose isomerase in the Glanville fritillary butterfly. Insect Sci 2023; 30:758-770. [PMID: 36342954 DOI: 10.1111/1744-7917.13145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 10/18/2022] [Accepted: 10/24/2022] [Indexed: 06/15/2023]
Abstract
Temperature is one of the most important environmental factors that affect organisms, especially ectotherms, due to its effects on protein stability. Understanding the general rules that govern thermostability changes in proteins to adapt high-temperature environments is crucial. Here, we report the amino acid substitutions of phosphoglucose isomerase (PGI) related to thermostability in the Glanville fritillary butterfly (Melitaea cinxia, Lepidoptera: Nymphalidae). The PGI encoded by the most common allele in M. cinxia in the Chinese population (G3-PGI), which is more thermal tolerant, is more stable under heat stress than that in the Finnish population (D1-PGI). There are 5 amino acid substitutions between G3-PGI and D1-PGI. Site-directed mutagenesis revealed that the combination of amino acid substitutions of H35Q, M49T, and I64V may increase PGI thermostability. These substitutions alter the 3D structure to increase the interaction between 2 monomers of PGI. Through molecular dynamics simulations, it was found that the amino acid at site 421 is more stable in G3-PGI, confining the motion of the α-helix 420-441 and stabilizing the interaction between 2 PGI monomers. The strategy for high-temperature adaptation through these 3 amino acid substitutions is also adopted by other butterfly species (Boloria eunomia, Aglais urticae, Colias erate, and Polycaena lua) concurrent with M. cinxia in the Tianshan Mountains of China, i.e., convergent evolution in butterflies.
Collapse
Affiliation(s)
- Jianing Yang
- School of Life Sciences, Peking University, Beijing, China
| | - Di Wang
- School of Life Sciences, Peking University, Beijing, China
| | - Hui Liu
- School of Life Sciences, Peking University, Beijing, China
| | - Lin Wang
- School of Life Sciences, Peking University, Beijing, China
| | - Ling Jin
- School of Life Sciences, Peking University, Beijing, China
| | - Virpi Ahola
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - Chongren Xu
- School of Life Sciences, Peking University, Beijing, China
| | - Rongjiang Wang
- School of Life Sciences, Peking University, Beijing, China
| |
Collapse
|
4
|
Cheng S, Brenière-Letuffe D, Ahola V, Wong AO, Keung HY, Gurung B, Zheng Z, Costa KD, Lieu DK, Keung W, Li RA. Single-cell RNA sequencing reveals maturation trajectory in human pluripotent stem cell-derived cardiomyocytes in engineered tissues. iScience 2023; 26:106302. [PMID: 36950112 PMCID: PMC10025988 DOI: 10.1016/j.isci.2023.106302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 01/04/2023] [Accepted: 02/24/2023] [Indexed: 03/06/2023] Open
Abstract
Cardiac in vitro models have become increasingly obtainable and affordable with the optimization of human pluripotent stem cell-derived cardiomyocyte (hPSC-CM) differentiation. However, these CMs are immature compared to their in vivo counterparts. Here we study the cellular phenotype of hPSC-CMs by comparing their single-cell gene expression and functional profiles in three engineered cardiac tissue configurations: human ventricular (hv) cardiac anisotropic sheet, cardiac tissue strip, and cardiac organoid chamber (hvCOC), with spontaneously aggregated 3D cardiac spheroids (CS) as control. The CM maturity was found to increase with increasing levels of complexity of the engineered tissues from CS to hvCOC. The contractile components are the first function to mature, followed by electrophysiology and oxidative metabolism. Notably, the 2D tissue constructs show a higher cellular organization whereas metabolic maturity preferentially increases in the 3D constructs. We conclude that the tissue engineering models resembling configurations of native tissues may be reliable for drug screening or disease modeling.
Collapse
Affiliation(s)
- Shangli Cheng
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong SAR, China
| | - David Brenière-Letuffe
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong SAR, China
- Department of Clinical Sciences, Intervention and Technology, CLINTEC, Karolinska Institutet, 141 52 Stockholm, Sweden
- Division of Obstetrics and Gynecology, Karolinska Universitetssjukhuset, 141 86 Stockholm, Sweden
| | - Virpi Ahola
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong SAR, China
| | | | - Hoi Yee Keung
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong SAR, China
| | - Bimal Gurung
- Novoheart, Irvine, CA 92617, USA
- School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China
| | - Zongli Zheng
- Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong SAR, China
| | - Kevin D. Costa
- Novoheart, Irvine, CA 92617, USA
- Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA
| | - Deborah K. Lieu
- Novoheart, Irvine, CA 92617, USA
- Institute for Regenerative Cures and Stem Cell Program, University of California, Davis, Sacramento, CA 95817, USA
| | - Wendy Keung
- Novoheart, Irvine, CA 92617, USA
- Dr. Li Dak Sum Research Centre, The University of Hong Kong, Hong Kong SAR, China
| | - Ronald A. Li
- Novoheart, Irvine, CA 92617, USA
- Corresponding author
| |
Collapse
|
5
|
Smolander OP, Blande D, Ahola V, Rastas P, Tanskanen J, Kammonen JI, Oostra V, Pellegrini L, Ikonen S, Dallas T, DiLeo MF, Duplouy A, Duru IC, Halimaa P, Kahilainen A, Kuwar SS, Kärenlampi SO, Lafuente E, Luo S, Makkonen J, Nair A, de la Paz Celorio-Mancera M, Pennanen V, Ruokolainen A, Sundell T, Tervahauta AI, Twort V, van Bergen E, Österman-Udd J, Paulin L, Frilander MJ, Auvinen P, Saastamoinen M. Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map. Gigascience 2022; 11:6505122. [PMID: 35022701 PMCID: PMC8756199 DOI: 10.1093/gigascience/giab097] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 05/03/2021] [Accepted: 12/14/2021] [Indexed: 11/12/2022] Open
Abstract
BACKGROUND The Glanville fritillary (Melitaea cinxia) butterfly is a model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome-level assembly of the butterfly's genome produced from Pacific Biosciences sequencing of a pool of males, combined with a linkage map from population crosses. RESULTS The final assembly size of 484 Mb is an increase of 94 Mb on the previously published genome. Estimation of the completeness of the genome with BUSCO indicates that the genome contains 92-94% of the BUSCO genes in complete and single copies. We predicted 14,810 genes using the MAKER pipeline and manually curated 1,232 of these gene models. CONCLUSIONS The genome and its annotated gene models are a valuable resource for future comparative genomics, molecular biology, transcriptome, and genetics studies on this species.
Collapse
Affiliation(s)
- Olli-Pekka Smolander
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.,Department of Chemistry and Biotechnology, Tallinn University of Technology, 12618 Tallinn, Estonia
| | - Daniel Blande
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Virpi Ahola
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland.,Ming Wai Lau Centre for Reparative Medicine, Karolinska Institutet, 171 77 Stockholm, Hong Kong
| | - Pasi Rastas
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | | | - Juhana I Kammonen
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Vicencio Oostra
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland.,Department of Evolution, Ecology and Behaviour, University of Liverpool, Liverpool CH64 7TE, UK
| | - Lorenzo Pellegrini
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Suvi Ikonen
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Tad Dallas
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Michelle F DiLeo
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Anne Duplouy
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland.,Department of Biology, Lund University, 223 62 Lund, Sweden
| | - Ilhan Cem Duru
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Pauliina Halimaa
- Department of Environmental and Biological Sciences, University of Eastern Finland, 70211 KUOPIO, Finland
| | - Aapo Kahilainen
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Suyog S Kuwar
- Department of Entomology and Nematology, University of Florida, Gainesville, FL 32611-0620, USA.,Department of Zoology, Loknete Vyankatrao Hiray Arts, Science & Commerce College, 422003, Maharashtra, India
| | - Sirpa O Kärenlampi
- Department of Environmental and Biological Sciences, University of Eastern Finland, 70211 KUOPIO, Finland
| | - Elvira Lafuente
- Department of Aquatic Ecology, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland
| | - Shiqi Luo
- College of Plant Protection, China Agricultural University, Beijing 100083, China
| | - Jenny Makkonen
- Department of Environmental and Biological Sciences, University of Eastern Finland, 70211 KUOPIO, Finland
| | - Abhilash Nair
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | | | - Ville Pennanen
- Viikki Plant Science Centre, Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Annukka Ruokolainen
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Tarja Sundell
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Arja I Tervahauta
- Department of Environmental and Biological Sciences, University of Eastern Finland, 70211 KUOPIO, Finland
| | - Victoria Twort
- Department of Biology, Lund University, 223 62 Lund, Sweden
| | - Erik van Bergen
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Janina Österman-Udd
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland
| | - Lars Paulin
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Mikko J Frilander
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Petri Auvinen
- Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland
| | - Marjo Saastamoinen
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, 00014 Helsinki, Finland.,Helsinki Institute of Life Science (HiLIFE), University of Helsinki, 00014 Helsinki, Finland
| |
Collapse
|
6
|
Ortega N, Ahola V, Plaza-Reyes A, Schell J, Kumar P, Jouneau A, Duranthon V, Lanner F. 56 Mammalian pre-implantation embryos at the single cell level: The bovine as a model for early human embryonic development. Reprod Fertil Dev 2020. [DOI: 10.1071/rdv32n2ab56] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Single-cell transcriptomics and gene editing on human pre-implantation embryos have proved that mechanisms previously identified and well characterised in mouse pre-implantation development may not hold true in the human embryo. However, ethical and legal concerns limit the availability of surplus human embryos for research, resulting in the need for novel animal models. Bovine embryos share morphological and temporal resemblance with human early development; still, key molecular and cellular developmental mechanisms need to be further explored. In the present study, we performed a comparative single-cell RNA sequencing analysis across multiple pre-implantational developmental stages of invitro-derived bovine, human (Petropoulos et al. 2016 Cell 165, 1012-1026; https://doi.org/10.1016/j.cell.2016.03.023), and mouse embryos (Cheng et al. 2019 Cell Rep. 26, 2593-2607, https://doi.org/10.1016/j.celrep.2019.02.031; Posfai et al. 2017 eLife 6, e22906, https://doi.org/10.7554/eLife.22906; Chen et al. 2016 Genome Res. 26, 1342-1354). In total 497 blastomeres corresponding to embryonic days (E) E4-E8 were prepared using Smart sEqn 2, Illumina HiSEqn 2500 sequencing with 50-bp single-end reads. Embryonic stage was defined by cell numbers and morphology as multicellular stage (Mu, ~E4), morulae (M; E5), early blastocysts (EB, ~6), mid-expanded blastocysts, (MB, ~E7), and late expanded/hatched blastocysts (LB, ~E8). We found top differentially expressed genes elucidating how lineage specification and pluripotency is controlled in the early bovine embryo. Our transcriptomic data showed that the first lineage segregation in the pre-implantation bovine embryo occurs after cavitation at E6 in the early blastocyst, suggesting a similarity with the early human blastocyst. In addition, E7 showed distinctive and more mature inner cell mass (ICM) and trophectoderm (TE) profiles. Different from the mouse, where the first lineage segregation of TE-ICM is suggested to occur at the morula stage due to CDX2-OCT4 antagonism, we found that the expression of OCT4 protein cattle expanded blastocysts is not restricted to the ICM, similar to what has been reported to occur in the human embryo. Interestingly, we also found that the second lineage segregation, which segregates the epiblast from the primitive endoderm within the ICM, starts in bovine at E8 expanded hatched late blastocysts, suggesting a potential difference with humans, where TE-ICM and epiblast-primitive endoderm has previously been reported to occur almost concurrently. We are now complementing our findings with genome editing in bovine embryos by generating knockout embryos of different target genes part of an evolutionarily conserved signaling pathway to study their effects in the early pre-implantation embryo. We aim to elucidate how early lineage specification and pluripotency establishment occurs while offering theoretical support for efficient derivation and culture of bovine embryonic stem cells.
Collapse
|
7
|
Traut W, Ahola V, Smith DAS, Gordon IJ, Ffrench-Constant RH. Karyotypes versus Genomes: The Nymphalid Butterflies Melitaea cinxia, Danaus plexippus, and D. chrysippus. Cytogenet Genome Res 2017; 153:46-53. [PMID: 29130975 DOI: 10.1159/000484032] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/07/2017] [Indexed: 11/19/2022] Open
Abstract
The number of sequenced lepidopteran genomes is increasing rapidly. However, the corresponding assemblies rarely represent whole chromosomes and generally also lack the highly repetitive W sex chromosome. Knowledge of the karyotypes can facilitate genome assembly and further our understanding of sex chromosome evolution in Lepidoptera. Here, we describe the karyotypes of the Glanville fritillary Melitaea cinxia (n = 31), the monarch Danaus plexippus (n = 30), and the African queen D. chrysippus (2n = 60 or 59, depending on the source population). We show by FISH that the telomeres are of the (TTAGG)n type, as found in most insects. M. cinxia and D. plexippus have "conventional" W chromosomes which are heterochromatic in meiotic and somatic cells. In D. chrysippus, the W is inconspicuous. Neither telomeres nor W chromosomes are represented in the published genomes of M. cinxia and D. plexippus. Representation analysis in sequenced female and male D. chrysippus genomes detected an evolutionarily old autosome-Z chromosome fusion in Danaus. Conserved synteny of whole chromosomes, so called "macro synteny", in Lepidoptera permitted us to identify the chromosomes involved in this fusion. An additional and more recent sex chromosome fusion was found in D. chrysippus by karyotype analysis and classical genetics. In a hybrid population between 2 subspecies, D. c. chrysippus and D. c. dorippus, the W chromosome was fused to an autosome that carries a wing colour locus. Thus, cytogenetics and the present state of genome data complement one another to reveal the evolutionary history of the species.
Collapse
Affiliation(s)
- Walther Traut
- Institut für Biologie, Zentrum für medizinische Struktur- und Zellbiologie, Universität zu Lübeck, Lübeck, Germany
| | | | | | | | | |
Collapse
|
8
|
Affiliation(s)
- Virpi Ahola
- Department of Biosciences, P.O. Box 65, FI-00014 University of Helsinki, Finland
| | - Niklas Wahlberg
- Department of Biology, Lund University, Sölvegatan 37, SE-223 62 Lund, Sweden
| | - Mikko J. Frilander
- Institute of Biotechnology, P.O. Box 56, FI-00014 University of Helsinki, Finland
| |
Collapse
|
9
|
Hanski I, Schulz T, Wong SC, Ahola V, Ruokolainen A, Ojanen SP. Ecological and genetic basis of metapopulation persistence of the Glanville fritillary butterfly in fragmented landscapes. Nat Commun 2017; 8:14504. [PMID: 28211463 PMCID: PMC5321745 DOI: 10.1038/ncomms14504] [Citation(s) in RCA: 75] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2015] [Accepted: 12/27/2016] [Indexed: 01/11/2023] Open
Abstract
Ecologists are challenged to construct models of the biological consequences of habitat loss and fragmentation. Here, we use a metapopulation model to predict the distribution of the Glanville fritillary butterfly during 22 years across a large heterogeneous landscape with 4,415 small dry meadows. The majority (74%) of the 125 networks into which the meadows were clustered are below the extinction threshold for long-term persistence. Among the 33 networks above the threshold, spatial configuration and habitat quality rather than the pooled habitat area predict metapopulation size and persistence, but additionally allelic variation in a SNP in the gene Phosphoglucose isomerase (Pgi) explains 30% of variation in metapopulation size. The Pgi genotypes are associated with dispersal rate and hence with colonizations and extinctions. Associations between Pgi genotypes, population turnover and metapopulation size reflect eco-evolutionary dynamics, which may be a common feature in species inhabiting patch networks with unstable local dynamics.
Collapse
Affiliation(s)
- Ilkka Hanski
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, Helsinki FI-00014, Finland
| | - Torsti Schulz
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, Helsinki FI-00014, Finland
| | - Swee Chong Wong
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, Helsinki FI-00014, Finland
| | - Virpi Ahola
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, Helsinki FI-00014, Finland
| | - Annukka Ruokolainen
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, Helsinki FI-00014, Finland
| | - Sami P. Ojanen
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, Helsinki FI-00014, Finland
| |
Collapse
|
10
|
Ahola V. P-03-002 Diabetes mellitus type 1 with ED and low free testosterone. J Sex Med 2016. [DOI: 10.1016/j.jsxm.2016.03.223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
11
|
Kvist J, Mattila ALK, Somervuo P, Ahola V, Koskinen P, Paulin L, Salmela L, Fountain T, Rastas P, Ruokolainen A, Taipale M, Holm L, Auvinen P, Lehtonen R, Frilander MJ, Hanski I. Flight-induced changes in gene expression in the Glanville fritillary butterfly. Mol Ecol 2015; 24:4886-900. [DOI: 10.1111/mec.13359] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Revised: 08/24/2015] [Accepted: 08/25/2015] [Indexed: 12/15/2022]
Affiliation(s)
- Jouni Kvist
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 9) Helsinki Finland
| | - Anniina L. K. Mattila
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| | - Panu Somervuo
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 9) Helsinki Finland
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 4) Helsinki Finland
| | - Virpi Ahola
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| | - Patrik Koskinen
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 9) Helsinki Finland
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 4) Helsinki Finland
| | - Lars Paulin
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 4) Helsinki Finland
| | - Leena Salmela
- Department of Computer Science and Helsinki Institute for Information Technology HIIT; University of Helsinki; P.O. Box 68 (Gustaf Hällströmin katu 2b) Helsinki Finland
| | - Toby Fountain
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| | - Pasi Rastas
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| | - Annukka Ruokolainen
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| | - Minna Taipale
- Science for Life Laboratory; Department of Biosciences and Nutrition; Karolinska Institutet (Hälsovägen 7); SE-14157 Huddinge Sweden
| | - Liisa Holm
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 4) Helsinki Finland
| | - Petri Auvinen
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 4) Helsinki Finland
| | - Rainer Lehtonen
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| | - Mikko J. Frilander
- Institute of Biotechnology; University of Helsinki; P.O. Box 56 (Viikinkaari 9) Helsinki Finland
| | - Ilkka Hanski
- Department of Biosciences; University of Helsinki; P.O. Box 65 (Viikinkaari 1) Helsinki FI-00014 Finland
| |
Collapse
|
12
|
Ahola V, Koskinen P, Wong SC, Kvist J, Paulin L, Auvinen P, Saastamoinen M, Frilander MJ, Lehtonen R, Hanski I. Temperature- and sex-related effects of serine protease alleles on larval development in the Glanville fritillary butterfly. J Evol Biol 2015; 28:2224-35. [PMID: 26337146 DOI: 10.1111/jeb.12745] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Revised: 06/30/2015] [Accepted: 08/14/2015] [Indexed: 11/28/2022]
Abstract
The body reserves of adult Lepidoptera are accumulated during larval development. In the Glanville fritillary butterfly, larger body size increases female fecundity, but in males fast larval development and early eclosion, rather than large body size, increase mating success and hence fitness. Larval growth rate is highly heritable, but genetic variation associated with larval development is largely unknown. By comparing the Glanville fritillary population living in the Åland Islands in northern Europe with a population in Nantaizi in China, within the source of the post-glacial range expansion, we identified candidate genes with reduced variation in Åland, potentially affected by selection under cooler climatic conditions than in Nantaizi. We conducted an association study of larval growth traits by genotyping the extremes of phenotypic trait distributions for 23 SNPs in 10 genes. Three genes in clip-domain serine protease family were associated with larval growth rate, development time and pupal weight. Additive effects of two SNPs in the prophenoloxidase-activating proteinase-3 (ProPO3) gene, related to melanization, showed elevated growth rate in high temperature but reduced growth rate in moderate temperature. The allelic effects of the vitellin-degrading protease precursor gene on development time were opposite in the two sexes, one genotype being associated with long development time and heavy larvae in females but short development time in males. Sexually antagonistic selection is here evident in spite of sexual size dimorphism.
Collapse
Affiliation(s)
- V Ahola
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - P Koskinen
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - S C Wong
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - J Kvist
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - L Paulin
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - P Auvinen
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - M Saastamoinen
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - M J Frilander
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - R Lehtonen
- Department of Biosciences, University of Helsinki, Helsinki, Finland.,Genome-Scale Biology Research Program & Institute of Biomedicine, University of Helsinki, Helsinki, Finland
| | - I Hanski
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| |
Collapse
|
13
|
Luo S, Ahola V, Shu C, Xu C, Wang R. Heat shock protein 70 gene family in the Glanville fritillary butterfly and their response to thermal stress. Gene 2015; 556:132-41. [DOI: 10.1016/j.gene.2014.11.043] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Revised: 11/05/2014] [Accepted: 11/20/2014] [Indexed: 12/13/2022]
|
14
|
Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I. The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nat Commun 2014; 5:4737. [PMID: 25189940 PMCID: PMC4164777 DOI: 10.1038/ncomms5737] [Citation(s) in RCA: 153] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Accepted: 07/17/2014] [Indexed: 12/30/2022] Open
Abstract
Previous studies have reported that chromosome synteny in Lepidoptera has been well conserved, yet the number of haploid chromosomes varies widely from 5 to 223. Here we report the genome (393 Mb) of the Glanville fritillary butterfly (Melitaea cinxia; Nymphalidae), a widely recognized model species in metapopulation biology and eco-evolutionary research, which has the putative ancestral karyotype of n=31. Using a phylogenetic analyses of Nymphalidae and of other Lepidoptera, combined with orthologue-level comparisons of chromosomes, we conclude that the ancestral lepidopteran karyotype has been n=31 for at least 140 My. We show that fusion chromosomes have retained the ancestral chromosome segments and very few rearrangements have occurred across the fusion sites. The same, shortest ancestral chromosomes have independently participated in fusion events in species with smaller karyotypes. The short chromosomes have higher rearrangement rate than long ones. These characteristics highlight distinctive features of the evolutionary dynamics of butterflies and moths. Butterflies and moths (Lepidoptera) vary in chromosome number. Here, the authors sequence the genome of the Glanville fritillary butterfly, Melitaea cinxia, show it has the ancestral lepidopteran karyotype and provide insight into how chromosomal fusions have shaped karyotype evolution in butterflies and moths.
Collapse
Affiliation(s)
- Virpi Ahola
- 1] Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland [2]
| | - Rainer Lehtonen
- 1] Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland [2] Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland [3] Institute of Biomedicine, University of Helsinki, FI-00014 Helsinki, Finland [4] Center of Excellence in Cancer Genetics, University of Helsinki, FI-00014 Helsinki, Finland [5] [6]
| | - Panu Somervuo
- 1] Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland [2] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland [3]
| | - Leena Salmela
- Department of Computer Science &Helsinki Institute for Information Technology HIIT, University of Helsinki, FI-00014 Helsinki, Finland
| | - Patrik Koskinen
- 1] Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland [2] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland
| | - Pasi Rastas
- Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland
| | - Niko Välimäki
- 1] Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland [2] Institute of Biomedicine, University of Helsinki, FI-00014 Helsinki, Finland
| | - Lars Paulin
- Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland
| | - Jouni Kvist
- Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland
| | - Niklas Wahlberg
- Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Jaakko Tanskanen
- 1] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland [2] Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, Finland
| | - Emily A Hornett
- 1] Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK [2] Department of Biology, Pennsylvania State University, Pennsylvania 16802, USA
| | | | - Shiqi Luo
- College of Life Sciences, Peking University, Beijing 100871, P.R. China
| | - Zijuan Cao
- College of Life Sciences, Peking University, Beijing 100871, P.R. China
| | - Maaike A de Jong
- 1] Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland [2] School of Biological Sciences, University of Bristol, Bristol BS8 1UG, UK
| | - Anne Duplouy
- Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland
| | | | - Heiko Vogel
- Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Rajiv C McCoy
- Department of Biology, Stanford University, Stanford, California 94305, USA
| | - Kui Qian
- Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland
| | - Wong Swee Chong
- Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland
| | - Qin Zhang
- BioMediTech, University of Tampere, FI-33520 Tampere, Finland
| | - Freed Ahmad
- Department of Information Technology, University of Turku, FI-20014 Turku, Finland
| | - Jani K Haukka
- BioMediTech, University of Tampere, FI-33520 Tampere, Finland
| | - Aruj Joshi
- BioMediTech, University of Tampere, FI-33520 Tampere, Finland
| | - Jarkko Salojärvi
- Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland
| | | | - Ewald Grosse-Wilde
- Department of Evolutionary Neuroethology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Daniel Hughes
- 1] European Bioinformatics Institute, Hinxton CB10 1SD, UK [2] Baylor College of Medicine, Human Genome Sequencing Center, Houston, Texas 77030-3411, USA
| | - Riku Katainen
- 1] Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland [2] Institute of Biomedicine, University of Helsinki, FI-00014 Helsinki, Finland
| | - Esa Pitkänen
- 1] Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland [2] Institute of Biomedicine, University of Helsinki, FI-00014 Helsinki, Finland
| | - Johannes Ylinen
- Department of Computer Science &Helsinki Institute for Information Technology HIIT, University of Helsinki, FI-00014 Helsinki, Finland
| | - Robert M Waterhouse
- 1] Department of Genetic Medicine and Development, University of Geneva Medical School &Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland [2] Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [3] The Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA
| | - Mikko Turunen
- Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland
| | - Anna Vähärautio
- 1] Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland [2] Department of Pathology, University of Helsinki, FI-00014 Helsinki, Finland [3] Science for Life Laboratory, Department of Biosciences and Nutrition, Karolinska Institutet, SE-14183 Stockholm, Sweden
| | - Sami P Ojanen
- Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland
| | - Alan H Schulman
- 1] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland [2] Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, Finland
| | - Minna Taipale
- 1] Genome-Scale Biology Research Program, University of Helsinki, FI-00014 Helsinki, Finland [2] Science for Life Laboratory, Department of Biosciences and Nutrition, Karolinska Institutet, SE-14183 Stockholm, Sweden
| | - Daniel Lawson
- European Bioinformatics Institute, Hinxton CB10 1SD, UK
| | - Esko Ukkonen
- Department of Computer Science &Helsinki Institute for Information Technology HIIT, University of Helsinki, FI-00014 Helsinki, Finland
| | - Veli Mäkinen
- Department of Computer Science &Helsinki Institute for Information Technology HIIT, University of Helsinki, FI-00014 Helsinki, Finland
| | - Marian R Goldsmith
- Department of Biological Sciences, University of Rhode Island, Kingston, Rhode Island 02881-0816, USA
| | - Liisa Holm
- 1] Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland [2] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland [3]
| | - Petri Auvinen
- 1] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland [2]
| | - Mikko J Frilander
- 1] Institute of Biotechnology, University of Helsinki, FI-00014 Helsinki, Finland [2]
| | - Ilkka Hanski
- Department of Biosciences, University of Helsinki, FI-00014 Helsinki, Finland
| |
Collapse
|
15
|
Räty M, Ketoja E, Pitkänen T, Ahola V, Kananen K, Peippo J. In vitro maturation supplements affect developmental competence of bovine cumulus-oocyte complexes and embryo quality after vitrification. Cryobiology 2011; 63:245-55. [PMID: 21985767 DOI: 10.1016/j.cryobiol.2011.09.134] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2011] [Revised: 08/24/2011] [Accepted: 09/21/2011] [Indexed: 11/19/2022]
Abstract
Oocyte quality affects subsequent embryo development and quality. We examined the impact of bovine oocyte in vitro maturation (IVM) conditions on subsequent embryo yield, quality and cryosurvival. Cumulus-oocyte complexes (COCs) were sampled for cytological and gene expression analysis after IVM in TCM199 supplemented with 10% fetal bovine serum (FBS), 4 mg/ml of fatty-acid-free bovine serum albumin (FAFBSA), 4 mg/ml of polyvinylpyrrolidone (PVP), FAFBSA with epidermal growth factor (EGF, 100 ng/ml) and insulin-like growth factor 1 (IGF-I, 100 ng/ml) (FAFBSAGF), PVP with EGF and IGF-I (PVPGF) or PVP with single strength BME and MEM amino acids (PVPAA). The remaining COCs were fertilized. On day 7 (IVF=day 0) quality 1 blastocysts were vitrified or analyzed for glucose transporter 1 (Glut-1) expression levels. The remaining blastocysts (days 7-9) were evaluated for morphology and total cell counts. After warming, survival and hatching rates were evaluated followed by total cell counts and Glut-1 expression levels. Only PVPGF IVM resulted in embryo production rates comparable to those recorded with FBS IVM. Growth factors with FAFBSA and amino acids with PVP reduced embryo production rates whereas the effect of the growth factors with PVP was negligible. Insulin-like growth factor 2 binding protein 3 (IGF2BP3) and beta cell translocation gene 4 (BTG4) were revealed as potential candidates for oocyte developmental competence, and secreted protein, acidic and rich in cysteine (SPARC) for cumulus cell expansion. There were no differences among treatments in hatching rates of vitrified embryos after warming. However, total cell numbers and Glut-1 expression levels at 72 h were affected.
Collapse
Affiliation(s)
- Mervi Räty
- MTT Agrifood Research Finland, Biotechnology and Food Research, Jokioinen, Finland
| | | | | | | | | | | |
Collapse
|
16
|
Honkatukia M, Tuiskula-Haavisto M, Ahola V, Uimari P, Schmutz M, Preisinger R, Cavero D, Vennerström P, Arango J, O'Sullivan N, Fulton J, Vilkki J. Mapping of QTL affecting incidence of blood and meat inclusions in egg layers. BMC Genet 2011; 12:55. [PMID: 21668941 PMCID: PMC3145579 DOI: 10.1186/1471-2156-12-55] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2010] [Accepted: 06/13/2011] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Occurrence of blood and meat inclusions is an internal egg quality defect. Mass candling reveals most of the spots, but because brown eggshell hampers selection in brown chicken lines it has not been possible to eliminate the defect by selection. Estimated frequency of blood and meat inclusions in brown layers is about 18% whereas it is 0.5% in white egg layers. Several factors are known to increase the incidence of this fault: genetic background, low level of vitamin A and/or D, stress or infections, for instance. To study the genetic background of the defect, a mapping population of 1599 F2 hens from a cross of White Rock and Rhode Island Red lines was set up. RESULTS Our histopathological analyses show that blood spots consist of mainly erythrocytes and that meat spots are accumulations of necrotic material. Linkage analysis of 27 chromosomes with 162 microsatellite markers revealed one significant quantitative trait locus (QTL) affecting blood spot and meat spot frequency. We sequenced a fragment of a candidate gene within the region, ZO-2, coding for a tight junction protein. Nine polymorphisms were detected and two of them were included in fine-mapping and association analysis. Fine-mapping defined the QTL result. To further verify the QTL, association analyses were carried out in two independent commercial breeding lines with the marker MCW241 and surrounding SNPs. Association was found mainly in a 0.8 Mb-wide chromosomal area on GGAZ. CONCLUSIONS There was good agreement between the location of the QTL region on chromosome Z and the association results in the commercial breeds analyzed. Variations found in tight junction protein ZO-2 and microRNA gga-mir-1556 may predispose egg layers to blood and meat spot defects. This paper describes the first results of detailed QTL analyses of the blood and meat spots trait(s) in chickens.
Collapse
Affiliation(s)
- Mervi Honkatukia
- Biotechnology and Food Research, MTT, Jokioinen, 31600, Finland.
| | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
17
|
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FSL, Lau LPL, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CTA, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JGR, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJM, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo ARR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IKFDM, de Oliveira CJF, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JCM, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, Moré DD, Muntean CT, Nandakumar HP, Nogueira MFG, Olsaker I, Pant SD, Panzitta F, Pastor RCP, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BPVL, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 2009; 324:522-8. [PMID: 19390049 DOI: 10.1126/science.1169588] [Citation(s) in RCA: 806] [Impact Index Per Article: 53.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian (marsupial or monotreme) genomes. Cattle-specific evolutionary breakpoint regions in chromosomes have a higher density of segmental duplications, enrichment of repetitive elements, and species-specific variations in genes associated with lactation and immune responsiveness. Genes involved in metabolism are generally highly conserved, although five metabolic genes are deleted or extensively diverged from their human orthologs. The cattle genome sequence thus provides a resource for understanding mammalian evolution and accelerating livestock genetic improvement for milk and meat production.
Collapse
|
18
|
|
19
|
Ahola V, Aittokallio T, Vihinen M, Uusipaikka E. A statistical score for assessing the quality of multiple sequence alignments. BMC Bioinformatics 2006; 7:484. [PMID: 17081313 PMCID: PMC1687212 DOI: 10.1186/1471-2105-7-484] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2006] [Accepted: 11/03/2006] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein structures, building phylogenetic trees etc. Although the automatic construction of a multiple sequence alignment for a set of remotely related sequences cause a very challenging and error-prone task, many downstream analyses still rely heavily on the accuracy of the alignments. RESULTS To address the need for an objective evaluation framework, we introduce a statistical score that assesses the quality of a given multiple sequence alignment. The quality assessment is based on counting the number of significantly conserved positions in the alignment using importance sampling method in conjunction with statistical profile analysis framework. We first evaluate a novel objective function used in the alignment quality score for measuring the positional conservation. The results for the Src homology 2 (SH2) domain, Ras-like proteins, peptidase M13, subtilase and beta-lactamase families demonstrate that the score can distinguish sequence patterns with different degrees of conservation. Secondly, we evaluate the quality of the alignments produced by several widely used multiple sequence alignment programs using a novel alignment quality score and a commonly used sum of pairs method. According to these results, the Mafft strategy L-INS-i outperforms the other methods, although the difference between the Probcons, TCoffee and Muscle is mostly insignificant. The novel alignment quality score provides similar results than the sum of pairs method. CONCLUSION The results indicate that the proposed statistical score is useful in assessing the quality of multiple sequence alignments.
Collapse
Affiliation(s)
- Virpi Ahola
- Biotechnology and Food Research, MTT Agrifood Research Finland, Jokioinen, Finland
- Department of Statistics, University of Turku, Turku, Finland
| | - Tero Aittokallio
- Department of Mathematics, University of Turku, Turku, Finland
- Systems Biology Unit, Institut Pasteur, Paris, France
| | - Mauno Vihinen
- Institute of Medical Technology, University of Tampere, Tampere, Finland
- Research Unit, Tampere University Hospital, Tampere, Finland
| | - Esa Uusipaikka
- Department of Statistics, University of Turku, Turku, Finland
| |
Collapse
|
20
|
Sironen A, Thomsen B, Andersson M, Ahola V, Vilkki J. An intronic insertion in KPL2 results in aberrant splicing and causes the immotile short-tail sperm defect in the pig. Proc Natl Acad Sci U S A 2006; 103:5006-11. [PMID: 16549801 PMCID: PMC1458785 DOI: 10.1073/pnas.0506318103] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The immotile short-tail sperm defect is an autosomal recessive disease within the Finnish Yorkshire pig population. This disease specifically affects the axoneme structure of sperm flagella, whereas cilia in other tissues appear unaffected. Recently, the disease locus was mapped to a 3-cM region on porcine chromosome 16. To facilitate identification of candidate genes, we constructed a porcine-human comparative map, which anchored the disease locus to a region on human chromosome 5p13.2 containing eight annotated genes. Sequence analysis of a candidate gene KPL2 revealed the presence of an inserted retrotransposon within an intron. The insertion affects splicing of the KPL2 transcript in two ways; it either causes skipping of the upstream exon, or causes the inclusion of an intronic sequence as well as part of the insertion in the transcript. Both changes alter the reading frame leading to premature termination of translation. Further work revealed that the aberrantly spliced exon is expressed predominantly in testicular tissue, which explains the tissue-specificity of the immotile short-tail sperm defect. These findings show that the KPL2 gene is important for correct axoneme development and provide insight into abnormal sperm development and infertility disorders.
Collapse
Affiliation(s)
- Anu Sironen
- MTT Agrifood Research Finland, Animal Production Research, Animal Breeding, FIN-31600, Jokioinen, Finland.
| | | | | | | | | |
Collapse
|
21
|
Haapala TT, Nelimarkka L, Saari JM, Ahola V, Saari KM. Endophthalmitis following cataract surgery in southwest Finland from 1987 to 2000. Graefes Arch Clin Exp Ophthalmol 2005; 243:1010-7. [PMID: 15906062 DOI: 10.1007/s00417-005-1190-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2005] [Revised: 02/25/2005] [Accepted: 03/29/2005] [Indexed: 10/25/2022] Open
Abstract
PURPOSE To investigate the incidence, causes, prevention, treatment and outcome of postoperative endophthalmitis (POE) following cataract surgery in southwest Finland from 1987 to 2000. METHODS We reviewed the medical records of all patients with POE following cataract surgery treated in the hospital district of Southwest Finland from 1 January 1987 to 31 December 2000. Population-based annual incidence rates of cataract extractions and POE were calculated using the corrected population statistics of the hospital district. RESULTS There were 29,350 cataract procedures during the 14-year period. POE developed in 47 patients. The annual incidence of cataract operations increased more than fivefold from 1987 (155 per 100,000 population) to the maximum in 1999 (930 per 100,000 population), whereas the annual incidence of postcataract endophthalmitis decreased from the maximum of 11.1 per 1,000 cataract extractions (1.91 per 100,000 population) in 1988 to the minimum of 0-0.6 per 1,000 cataract extractions in 1999 and 2000. POE occurred statistically significantly more frequently after extracapsular cataract extraction (ECCE) than after phacoemulsification (Phaco) (P=0.0006). Gram-positive bacteria were the most frequent cause of acute POE and Propionibacterium acnes was the most frequent reason for delayed-onset POE. The complications of POE after cataract surgery included visual loss to below 0.05 (25.5% of affected eyes), opacification of the cornea (21.3%), secondary cataract (40.4%), increase in intraocular pressure (29.8%), vitreous clouding (63.8%), and retinal detachment (6.4%). Nearly one half of the eyes achieved final visual acuity of 0.5 or better. CONCLUSIONS During the 14-year study period there was a shift from ECCE to Phaco, a fivefold increase in cataract extractions, and a decrease in the annual incidence of POE from 5.5-11.1 to 0-0.6 per 1,000 operations. Phaco was associated with a lower risk of POE than ECCE.
Collapse
Affiliation(s)
- Timo T Haapala
- Department of Ophthalmology, University of Turku, 20520, Turku, Finland
| | | | | | | | | |
Collapse
|
22
|
Saari KM, Nelimarkka L, Ahola V, Loftsson T, Stefánsson E. Comparison of topical 0.7% dexamethasone-cyclodextrin with 0.1% dexamethasone sodium phosphate for postcataract inflammation. Graefes Arch Clin Exp Ophthalmol 2005; 244:620-6. [PMID: 16217662 DOI: 10.1007/s00417-005-0124-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2005] [Revised: 07/20/2005] [Accepted: 08/08/2005] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND To compare 0.7% dexamethasone-cyclodextrin aqueous eye drop solution applied once daily with 0.1% dexamethasone sodium phosphate eye drops applied three times a day for the control of postoperative inflammation after cataract surgery. METHODS Twenty cataract patients who underwent phacoemulsification and intraocular lens implantation were randomly divided into two postoperative treatment groups. Postoperative medication in group I included 0.1% dexamethasone sodium phosphate eye drops three times daily and in group II 0.7% dexamethasone-cyclodextrin eye drop solution once daily. Testing of visual acuity, biomicroscopic examination, applanation tonometry and laser flare cell meter (LFCM) examination were carried out before operation and days 1, 3, 7 and 21 after surgery. RESULTS Preoperative and postoperative visual acuity, aqueous flare and cells in biomicroscopic examination, and the mean intraocular pressure did not show any statistically significant differences between the treatment groups. LFCM examination showed that the mean postoperative photon count values (P=0.032) and the median cell count values on the 1st (P=0.014), 3rd (P=0.031), 7th (P=0.034), and 21st (P=0.0097) postoperative days in group I were more elevated than in group II. CONCLUSIONS 0.7% dexamethasone-cyclodextrin eye drops applied once daily is a more effective postoperative anti-inflammatory medication than 0.1% dexamethasone sodium phosphate applied three times a day. In both groups, 3 weeks after the operation the mean visual acuity was normal and intraocular pressure significantly lower than before operation. The use of 0.7% dexamethasone-cyclodextrin eye drops may be useful especially in elderly people who cannot apply themselves the eye drops onto the eye.
Collapse
Affiliation(s)
- K Matti Saari
- Department of Ophthalmology, University of Turku, Kiinamyllynkatu 4-8, 20520, Turku, Finland.
| | | | | | | | | |
Collapse
|
23
|
Ahola V, Aittokallio T, Uusipaikka E, Vihinen M. Statistical methods for identifying conserved residues in multiple sequence alignment. Stat Appl Genet Mol Biol 2004; 3:Article28. [PMID: 16646807 DOI: 10.2202/1544-6115.1074] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The assessment of residue conservation in a multiple sequence alignment is a central issue in bioinformatics. Conserved residues and regions are used to determine structural and functional motifs or evolutionary relationships between the sequences of a multiple sequence alignment. For this reason, residue conservation is a valuable measure for database and motif search or for estimating the quality of alignments. In this paper, we present statistical methods for identifying conserved residues in multiple sequence alignments. While most earlier studies examine the positional conservation of the alignment, we focus on the detection of individual conserved residues at a position. The major advantages of multiple comparison methods originate from their ability to select conserved residues simultaneously and to consider the variability of the residue estimates. Large-scale simulations were used for the comparative analysis of the methods. Practical performance was studied by comparing the structurally and functionally important residues of Src homology 2 (SH2) domains to the assignments of the conservation indices. The applicability of the indices was also compared in three additional protein families comprising different degrees of entropy and variability in alignment positions. The results indicate that statistical multiple comparison methods are sensitive and reliable in identifying conserved residues.
Collapse
|
24
|
Abstract
MOTIVATION Profile hidden Markov models provide a sensitive method for performing sequence database search and aligning multiple sequences. One of the drawbacks of the hidden Markov model is that the conserved amino acids are not emphasized, but signal and noise are treated equally. For this reason, the number of estimated emission parameters is often enormous. Focusing the analysis on conserved residues only should increase the accuracy of sequence database search. RESULTS We address this issue with a new method for efficient emission probability (EEP) estimation, in which amino acids are divided into effective and ineffective residues at each conserved alignment position. A practical study with 20 protein families demonstrated that the EEP method is capable of detecting family members from other proteins with sensitivity of 98% and specificity of 99% on the average, even if the number of free emission parameters was decreased to 15% of the original. In the database search for TIM barrel sequences, EEP recognizes the family members nearly as accurately as HMMER or Blast, but the number of false positive sequences was significantly less than that obtained with the other methods. AVAILABILITY The algorithms written in C language are available on request from the authors.
Collapse
Affiliation(s)
- Virpi Ahola
- Department of Statistics, FIN-20014 University of Turku, Finland.
| | | | | | | |
Collapse
|
25
|
Abstract
The cross-sectional study assessed the associations among smoking status, number of cigarettes smoked per day, and psychiatric symptoms in 88 chronic schizophrenic outpatients with a stable psychic condition. Among the 49 smokers, the number of cigarettes smoked per day was associated with the severity of cognitive symptoms of the Positive and Negative Syndrome Scale. The authors suggest that smoking may alleviate cognitive deficits in schizophrenia by increasing dopaminergic neurotransmission in the prefrontal areas of the brain.
Collapse
|
26
|
Affiliation(s)
- T Taiminen
- Department of Psychiatry, Turku University Central Hospital, Finland
| | | | | | | | | | | | | |
Collapse
|
27
|
Abstract
OBJECTIVE The effect of smoking on daily doses and plasma levels of neuroleptics prescribed for schizophrenic patients was studied. METHODS 90 outpatients with schizophrenic disorder (DSM-III-R) who were on a stable regimen of psychotropic medication and showed a stable clinical state were included in a double-blind placebo-controlled trial. Data were collected and blood tests taken at the baseline interview. The plasma levels were obtained for 52 patients. RESULTS Daily neuroleptic doses converted to chlorpromazine equivalents correlated significantly (r = 0.436) with the plasma levels of their unmetabolised fractions. The neuroleptic doses increased with age in smokers, while in nonsmokers they decreased. Neither sex, age nor smoking had a significant association with the neuroleptic plasma levels. CONCLUSIONS Smoking seems to lead to increased neuroleptic dosages in postmenopausal schizophrenics by increasing hepatic metabolism and renal excretion of the drugs and possibly enhancing dopamine release. It is also possible that older smoking patients form a selected group of heavy smoker and they, therefore, need exceptionally high neuroleptic doses.
Collapse
Affiliation(s)
- R K Salokangas
- Department of Psychiatry, University of Turku, Turku University Central Hospital, Finland
| | | | | | | | | | | | | |
Collapse
|
28
|
Syvälahti EK, Taiminen T, Saarijärvi S, Lehto H, Niemi H, Ahola V, Dahl ML, Salokangas RK. Citalopram causes no significant alterations in plasma neuroleptic levels in schizophrenic patients. J Int Med Res 1997; 25:24-32. [PMID: 9027670 DOI: 10.1177/030006059702500104] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Steady-state plasma concentrations of commonly used neuroleptic drugs were measured in 90 schizophrenic patients before and after adding placebo or citalopram (40 mg/day) to their treatment regimen. Plasma concentrations of citalopram and its main metabolite, desmethylcitalopram, were also measured. In addition, patients with exceptionally high neuroleptic levels or an increase in adverse effects during the 12-week study period were evaluated for their debrisoquine/sparteine hydroxylase (CYP2D6) genotype, an enzyme responsible for oxidative metabolism of several neuroleptics and selective serotonin re-uptake inhibitors. There were no significant changes in plasma concentrations of haloperidol, chlorpromazine, zuclopenthixol, levomepromazine, thioridazine or perphenazine during the study. Plasma concentrations of citalopram and desmethylcitalopram were well within the levels reported previously with monotherapy, and remained stable throughout the study. None of the 15 patients analysed for the CYP2D6 genotype was a poor metabolizer. It is concluded that clinically important pharmacokinetic drug interactions do not play a crucial role when citalopram is used as an augmentation therapy in neuroleptic-treated schizophrenic patients.
Collapse
Affiliation(s)
- E K Syvälahti
- Department of Pharmacology and Clinical Pharmacology, University of Turku, Finland
| | | | | | | | | | | | | | | |
Collapse
|
29
|
Taiminen TJ, Syvälahti E, Saarijärvi S, Niemi H, Lehto H, Ahola V, Salokangas RK. Citalopram as an adjuvant in schizophrenia: further evidence for a serotonergic dimension in schizophrenia. Int Clin Psychopharmacol 1997; 12:31-5. [PMID: 9179631 DOI: 10.1097/00004850-199701000-00004] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
There is increasing evidence suggesting that symptoms of depression and anxiety may also be associated with serotonergic dysfunction in schizophrenic patients. The effect of the adjuvant selective serotonin reuptake inhibitor citalopram was assessed regarding the symptom dimensions of schizophrenia measured with the Positive and Negative Syndrome Scale (PANSS) and with the Hamilton Rating Scale for Depression (HRSD). Citalopram alleviated symptoms of the depression/anxiety dimension of the PANSS, but not the symptoms of the four other PANSS domains or depressive symptoms measured with the HRSD. The results support the hypothesis of a serotonergic dimension in schizophrenia.
Collapse
Affiliation(s)
- T J Taiminen
- Department of Psychiatry, Turku University Central Hospital, Finland
| | | | | | | | | | | | | |
Collapse
|
30
|
Salokangas RK, Saarijärvi S, Taiminen T, Kallioniemi H, Lehto H, Niemi H, Tuominen J, Ahola V, Syvälahti E. Citalopram as an adjuvant in chronic schizophrenia: a double-blind placebo-controlled study. Acta Psychiatr Scand 1996; 94:175-80. [PMID: 8891083 DOI: 10.1111/j.1600-0447.1996.tb09844.x] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
The effects of citalopram--the most selective serotonin reuptake inhibitor on the market--on psychopathological symptoms were studied in chronic schizophrenic patients on a stable regimen of neuroleptic medication. Outpatients suffering from schizophrenic disorder (DSM-III-R) with Positive and Negative Symptom Scale (PANSS) scores higher than 50 were included in a double-blind placebo-controlled add-on study. The daily dose of citalopram was 20 mg in the first week and 40 mg for the remaining period. A total of 90 patients (45 patients receiving citalopram and 45 receiving placebo) completed the 12-week trial. There were no changes in neuroleptic plasma levels during the trial. There was a significant decrease in total PANNS scores during the trial, although no statistically significant differences between the citalopram group and the placebo group were revealed. The number of responders in terms of severity of illness (CGI) was higher and the increase in subjective well-being (VAS) was greater in patients on citalopram than in those receiving placebo. There were no significant differences in the occurrence of side-effects. It is concluded that, in chronic schizophrenic out-patients, citalopram has no clear effect on the psychopathological symptoms; it may improve the general clinical condition, and it appears to increase the subjective well-being of these patients. Citalopram appears to be safe when used to treat schizophrenic patients who are receiving concomitant neuroleptic treatment.
Collapse
|
31
|
Abstract
We undertook this study to determine whether predictors of positive placebo response in chronic schizophrenic outpatients could be identified. Twelve placebo responders and 33 placebo nonresponders who participated in a parallel-group, double-blind, 12-week clinical drug trial were compared. No significant differences between the groups were found with regard to 16 anamnestic and symptom variables. To investigate further which variables at baseline predicted positive placebo response, a stepwise linear regression model was created. Of the seven variables entered into the model, only high scores in the positive domain of the Positive and Negative Syndrome Scale (delusions, unusual thought content, grandiosity, and suspiciousness/persecution) at baseline predicted significantly positive placebo response (p = .0047). Because the onset of placebo response was gradual, the authors hypothesize that placebo response in chronic schizophrenia consists mainly of two ingredients: nonspecific psychotherapeutic effect caused by the several assessments carried out during the study, and regression toward the mean.
Collapse
Affiliation(s)
- T Taiminen
- Department of Psychiatry, University of Turku Central Hospital, Turku, Finland
| | | | | | | | | | | | | |
Collapse
|