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Wang X, Jerome Z, Wang Z, Zhang C, Shen S, Kumar VV, Bai F, Krajewski P, Deneau D, Jawad A, Jones R, Piotrowicz G, Liu HX. Traffic light optimization with low penetration rate vehicle trajectory data. Nat Commun 2024; 15:1306. [PMID: 38378680 PMCID: PMC10879128 DOI: 10.1038/s41467-024-45427-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 01/23/2024] [Indexed: 02/22/2024] Open
Abstract
Traffic light optimization is known to be a cost-effective method for reducing congestion and energy consumption in urban areas without changing physical road infrastructure. However, due to the high installation and maintenance costs of vehicle detectors, most intersections are controlled by fixed-time traffic signals that are not regularly optimized. To alleviate traffic congestion at intersections, we present a large-scale traffic signal re-timing system that uses a small percentage of vehicle trajectories as the only input without reliance on any detectors. We develop the probabilistic time-space diagram, which establishes the connection between a stochastic point-queue model and vehicle trajectories under the proposed Newellian coordinates. This model enables us to reconstruct the recurrent spatial-temporal traffic state by aggregating sufficient historical data. Optimization algorithms are then developed to update traffic signal parameters for intersections with optimality gaps. A real-world citywide test of the system was conducted in Birmingham, Michigan, and demonstrated that it decreased the delay and number of stops at signalized intersections by up to 20% and 30%, respectively. This system provides a scalable, sustainable, and efficient solution to traffic light optimization and can potentially be applied to every fixed-time signalized intersection in the world.
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Affiliation(s)
- Xingmin Wang
- Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI, 48105, USA
| | - Zachary Jerome
- Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI, 48105, USA
| | - Zihao Wang
- Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI, 48105, USA
| | - Chenhao Zhang
- Department of Computer Science and Engineering, University of Michigan, Ann Arbor, MI, 48105, USA
| | - Shengyin Shen
- University of Michigan Transportation Research Institute, Ann Arbor, MI, 48105, USA
| | | | - Fan Bai
- General Motors Research and Development, Warren, MI, 48092, USA
| | - Paul Krajewski
- General Motors Research and Development, Warren, MI, 48092, USA
| | - Danielle Deneau
- Road Commission for Oakland County, Beverly Hills, MI, 48025, USA
| | - Ahmad Jawad
- Road Commission for Oakland County, Beverly Hills, MI, 48025, USA
| | - Rachel Jones
- Road Commission for Oakland County, Beverly Hills, MI, 48025, USA
| | - Gary Piotrowicz
- Road Commission for Oakland County, Beverly Hills, MI, 48025, USA
| | - Henry X Liu
- Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI, 48105, USA.
- University of Michigan Transportation Research Institute, Ann Arbor, MI, 48105, USA.
- Mcity, University of Michigan, Ann Arbor, MI, 48105, USA.
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2
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Uddin S, Bebhehani M, Al-Musallam L, Kumar VV, Sajid S. Po uptake in microalgae at different seawater pH: An experimental study simulating ocean acidification. Mar Pollut Bull 2020; 151:110844. [PMID: 32056632 DOI: 10.1016/j.marpolbul.2019.110844] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 12/13/2019] [Accepted: 12/18/2019] [Indexed: 06/10/2023]
Abstract
Climate change effects such as ocean acidification (OA) are known to affect the trace metal distribution. This experimental study provides the first data on 209Po uptake rates and 210Po concentration in five microalgae species under different pH scenarios. The experiment was conducted in replicates at three pH conditions 8.2, 8.0, and 7.5, representing the current and future climate change scenario as per IPCC RCP8.5. The 209Po uptake in the phytoplankton was highest in Thalassiosira weissflogi, i.e. 83% of the 209Po tracer was taken up at 8.2 pH whereas the lowest uptake was observed in Dunaliella salina equivalent to 20% at 7.5 pH. Similar behavior was observed in 210Po concentrations in these microalgae, where 210Po ranged between 3.16 ± 0.03 and 11.6 ± 0.04 Bq kg-1 wet weight (ww), with the highest in the Thalassioria weissflogi at 8.2 pH, and the lowest in Dunaliella salina at 7.5 pH. The difference in 209Po uptake and 210Po concentration was statistically significant (p < 0.001) both among species and the pH treatments in the order: Thalassiosira weissflogi > Tetraselmis suecica > Chaetoceros muelleri > Isochrysis galbana > Dunaliella salina and 8.2 > 8.0 > 7.5. A higher concentration of 209Po in seawater was measured at low pH condition in all the experimental tanks. Though the data clearly show the difference in concentration and uptake of polonium at different pH conditions, it is not known if lower pH is affecting the adsorbed or absorbed fraction. A detailed investigation will be required to understand the process as it can have a significant effect on biomagnification and marine food chain transfer under changing climatic scenarios.
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Affiliation(s)
- S Uddin
- Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, P.O. Box 24885, Safat 13109, Kuwait.
| | - M Bebhehani
- Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, P.O. Box 24885, Safat 13109, Kuwait
| | - L Al-Musallam
- Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, P.O. Box 24885, Safat 13109, Kuwait
| | - V V Kumar
- Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, P.O. Box 24885, Safat 13109, Kuwait
| | - S Sajid
- Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, P.O. Box 24885, Safat 13109, Kuwait
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3
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Heller M, Kumar VV, Pabst A, Brieger J, Al-Nawas B, Kämmerer PW. Osseous response on linear and cyclic RGD-peptides immobilized on titanium surfaces in vitro and in vivo. J Biomed Mater Res A 2017; 106:419-427. [PMID: 28971567 DOI: 10.1002/jbm.a.36255] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2017] [Revised: 09/18/2017] [Accepted: 09/25/2017] [Indexed: 12/11/2022]
Abstract
Biomimetic surface modifications of titanium (Ti) implants using the Arg-Gly-Asp-sequence (RGD) are promising to accelerate bone healing in cases of medical implants. Therefore, we compared the impact of linear and cyclic RGD (l- and c-RGD) covalently coupled onto Ti surfaces on the osseous response in vitro and in vivo. In vitro, osteoblasts' behavior on different surfaces (unmodified, amino-silanized [APTES], l- and c-RGD) was analysed regarding adhesion (fluorescence microscopy), proliferation (resazurin stain) and differentiation (reverse transcription polymerase chain reaction on alkaline phosphatase and osteocalcin). In vivo, osteosynthesis screws (unmodified n = 8, l-RGD n = 8, c-RGD n = 8) were inserted into the proximal tibiae of 12 rabbits and evaluated for bone growth parameters (bone implant contact [%] and vertical bone apposition [VBA;%]) at 3 and 6 weeks. In vitro, c- as well as l-RGD surfaces stimulated osteoblasts' adherence, proliferation and differentiation in a similar manner, with only subtle evidence of superiority of the c-RGD modifications. In vivo, c-RGD-modifications led to a significantly increased VBA after 3 and 6 weeks. Thus, coating with c-RGD appears to play an important role influencing osteoblasts' behaviour in vitro but especially in vivo. These findings can be applied prospectively to implantable biomaterials with hypothetically improved survival and success rates. © 2017 Wiley Periodicals Inc. J Biomed Mater Res Part A: 106A: 419-427, 2018.
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Affiliation(s)
- M Heller
- Department of Otorhinolaryngology, University Medical Centre of the Johannes Gutenberg-University Mainz, Mainz, Germany
| | - V V Kumar
- Department of Oral, Maxillofacial and Plastic Surgery, University Medical Centre Rostock, Schillingallee 35, 18057, Rostock, Germany
| | - A Pabst
- Department of Oral, Maxillofacial and Plastic Surgery, Federal Armed Forces Hospital Koblenz, Germany
| | - J Brieger
- Department of Otorhinolaryngology, University Medical Centre of the Johannes Gutenberg-University Mainz, Mainz, Germany
| | - B Al-Nawas
- Department of Oral, Maxillofacial and Plastic Surgery, University Medical Centre Halle (Saale), Germany
| | - P W Kämmerer
- Department of Oral, Maxillofacial and Plastic Surgery, University Medical Centre Rostock, Schillingallee 35, 18057, Rostock, Germany
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4
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Arca-Ramos A, Kumar VV, Eibes G, Moreira MT, Cabana H. Recyclable cross-linked laccase aggregates coupled to magnetic silica microbeads for elimination of pharmaceuticals from municipal wastewater. Environ Sci Pollut Res Int 2016; 23:8929-8939. [PMID: 26817474 DOI: 10.1007/s11356-016-6139-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Accepted: 01/19/2016] [Indexed: 06/05/2023]
Abstract
In the present work, the use of magnetic mesoporous silica microbeads (MMSMB) as supports was proposed to produce magnetically-separable cross-linked enzyme aggregates (MCLEAs). The effects of cross linking time, addition of bovine serum albumin as protein feeder, pH, glutaraldehyde concentration, and laccase:MMSMB mass ratio on the immobilization yield and enzyme load were investigated. The best conditions allowed the rapid preparation of MCLEAs with high enzyme load, i.e., 1.53 U laccase/mg MCLEAs. The stability of MCLEAs was improved with regard to low pH, presence of chemical denaturants, and real wastewater matrix, compared to free laccase. In addition, the novel biocatalyst exhibited good operational stability, maintaining up to 70 % of its initial activity after 10 successive batch reactions. Finally, MCLEAs demonstrated its catalytic potential to transform acetaminophen and various non-phenolic pharmaceutical active compounds as mefenamic acid, fenofibrate, and indomethacin from biologically treated wastewater effluent, with similar or even higher efficiency than free laccase.
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Affiliation(s)
- A Arca-Ramos
- Department of Chemical Engineering, Institute of Technology, University of Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - V V Kumar
- Department of Biotechnology, School of Bioengineering, SRM University, Kattankulathur, Chennai, 603203, India
| | - G Eibes
- Department of Chemical Engineering, Institute of Technology, University of Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - M T Moreira
- Department of Chemical Engineering, Institute of Technology, University of Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - H Cabana
- Department of Civil Engineering, Université de Sherbrooke, 2500 Boulevard de l'Université, Sherbrooke, Québec, J1K 2R1, Canada.
- Environmental Engineering Laboratory, Department of Civil Engineering, Université de Sherbrooke, 2500 Boulevard de l'Université, Sherbrooke, Québec, J1K 2R1, Canada.
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5
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Arora SS, Grover A, Kumar VV, Arora S. Aneurysmal bone cyst of maxilla existing concurrently with a giant cell granuloma of mandible: a case report of an unusual presentation. J Indian Soc Pedod Prev Dent 2012; 30:340-2. [PMID: 23514689 DOI: 10.4103/0970-4388.108938] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
Aneurysmal bone cysts (ABCs) are relatively rare but well-described expansile, osteolytic psuedocysts are most commonly seen in the long bones, pelvis, and vertebra. Although a well-described lesion, much confusion exists in its pathogenesis especially of the associations of this lesion with other lesions. Approximately, one-third of patients with ABC present simultaneously with another bone pathology. The aim of this paper is to describe a rare case of simultaneously occurring ABC of the maxilla and mandible with the mandibular lesion occurring predominantly as a giant cell granuloma. The paper discusses the various histopathological variations of ABC as well as different lesions associated with ABC and tries to provide a review of different pathogenesis theories of this interesting lesion.
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Affiliation(s)
- S S Arora
- Department of Oral and Maxillofacial Surgery, Swami Devi Dyal Hospital and Dental College, Barwala, India.
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6
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Malik NA, Kumar VV, Bora P. Le Fort I distraction osteogenesis of the edentulous maxilla. Int J Oral Maxillofac Surg 2010; 40:430-3. [PMID: 21036540 DOI: 10.1016/j.ijom.2010.09.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2008] [Revised: 06/30/2009] [Accepted: 09/28/2010] [Indexed: 11/28/2022]
Abstract
Rehabilitation of the edentulous patient with atrophic ridges is a problem especially when compounded with a severe prognathic inter-arch relationship. It is difficult to rehabilitate these patients prosthetically without correction of the malrelation of the jaws. The established surgical techniques for correcting combined sagittal and vertical discrepancies of edentulous jaws are often prolonged and complex with attendant morbidity. This article presents a novel, simple method of correction of severe interarch sagittal discrepancy (more than 15 mm) by performing distraction osteogenesis at Le Fort I level using an internal maxillary distraction device. This method is a simple, predictable and stable option for the correction of a severe, unfavourable intermaxillary relation in edentulous patients.
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Affiliation(s)
- N A Malik
- Department of Oral and Maxillofacial Surgery, Nair Hospital Dental College, Mumbai, India
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7
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Ramana BV, Kumar VV, Krishna PNR, Kumar CS, Reddy PUM, Raju TN. Effect of quercetin on galactose-induced hyperglycaemic oxidative stress in hepatic and neuronal tissues of Wistar rats. Acta Diabetol 2006; 43:135-41. [PMID: 17211565 DOI: 10.1007/s00592-006-0229-z] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/20/2006] [Accepted: 11/22/2006] [Indexed: 10/23/2022]
Abstract
In recent times there has been great demand for natural products that have possible preventive action against diabetes and its secondary complications. Keeping this in mind, this study was undertaken to investigate the influence of the flavonoid, quercetin, on oxidative stress markers and the antioxidant defence system of hepatic and neuronal tissues from galactose-induced hyperglycaemic rats. Weanling male Wistar rats were treated with 30% galactose in AIN 93 diet (group B, n=8) to induce hyperglycaemia. Control rats received normal Stock AIN 93 diet (group A, n=8). The third set of rats received group B diet with quercetin at 400 mg/100 g diet (group C, n=8). Glucose levels and body weights were measured on a weekly basis for four weeks to monitor the hyperglycaemia induced by galactose feeding. Parameters involved in the pathogenesis of galactose-induced hyperglycaemia, which included organosomatic index, protein content, antioxidant enzymes superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GSH-Px), tryptophan fluorescence, content of protein carbonyls, prooxidant malonaldehyde (MDA) and glutathione (GSH) in hepatic and neuronal tissues were determined at the end of the fourth week. The study suggest that quercetin counters the pro-oxidant effects of galactose-induced hyperglycaemic stress, as there was a significant reversal of changes with respect to body weights, organosomatic index of hepatic and neuronal tissues, lipid peroxidation, protein carbonyl content, reduced glutathione and activities of antioxidant enzymes. In addition, treatment with quercetin appears to reduce the osmotic stress induced by hyperglycaemia, as assessed by polyol pathway enzyme aldose reductase. These results imply that inclusion of quercetin in the diet controls, to some extent, galactose-induced hyperglycaemia and its attendant complications.
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Affiliation(s)
- B V Ramana
- Physiology Division, Department of Zoology, University College of Science, Osmania University, Hyderabad 500 007, India
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8
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Kumar VV, Pichon C, Refregiers M, Guerin B, Midoux P, Chaudhuri A. Single histidine residue in head-group region is sufficient to impart remarkable gene transfection properties to cationic lipids: evidence for histidine-mediated membrane fusion at acidic pH. Gene Ther 2003; 10:1206-15. [PMID: 12858185 DOI: 10.1038/sj.gt.3301979] [Citation(s) in RCA: 93] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Presence of endosome-disrupting multiple histidine functionalities in the molecular architecture of cationic polymers, such as polylysine, has previously been demonstrated to significantly enhance their in vitro gene delivery efficiencies. Towards harnessing improved transfection property through covalent grafting of endosome-disrupting single histidine functionality in the molecular structure of cationic lipids, herein, we report on the design, the synthesis and the transfection efficiency of two novel nonglycerol-based histidylated cationic amphiphiles. We found that L-histidine-(N,N-di-n-hexadecylamine)ethylamide (lipid 1) and L-histidine-(N,N-di-n-hexadecylamine,-N-methyl)ethylamide (lipid 2) in combination with cholesterol gave efficient transfections into various cell lines. The transfection efficiency of Chol/lipid 1 lipoplexes into HepG2 cells was two order of magnitude higher than that of FuGENE(TM)6 and DC-Chol lipoplexes, whereas it was similar into A549, 293T7 and HeLa cells. A better efficiency was obtained with Chol/lipid 2 lipoplexes when using the cytosolic luciferase expression vector (pT7Luc) under the control of the bacterial T7 promoter. Membrane fusion activity measurements using fluorescence resonance energy transfer (FRET) technique showed that the histidine head-groups of Chol/lipid 1 liposomes mediated membrane fusion in the pH range 5-7. In addition, the transgene expression results using the T7Luc expression vector convincingly support the endosome-disrupting role of the presently described mono-histidylated cationic transfection lipids and the release of DNA into the cytosol. We conclude that covalent grafting of a single histidine amino acid residue to suitable twin-chain hydrophobic compounds is able to impart remarkable transfection properties on the resulting mono-histidylated cationic amphiphile, presumably via the endosome-disrupting characteristics of the histidine functionalities.
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Affiliation(s)
- V V Kumar
- Division of Lipid Science and Technology, Indian Institute of Chemical Technology, India
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9
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Kumar VV, Katneni K, Chaluvadi MR, Shreeram S, Gangadhar S, Nataraj B, Kishore PH, Bhushan V, Subramaniam S. Validated HPLC method for determination of PAT-5A, an insulin sensitizing agent, in rat plasma. J Pharm Biomed Anal 2000; 22:251-5. [PMID: 10719907 DOI: 10.1016/s0731-7085(99)00262-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
A high performance liquid chromatographic method for the determination of PAT-5A (a potent insulin sensitizer) using DRF-2095 (a thiazolidinedione) as internal standard (I.S.) is described. A 1:1 v/v ethylacetate and dichloromethane solvent mixture was used for extraction of PAT-5A from plasma. A Kromasil KR100-5C18-250A, 5 microm, 4.6 x 250 mm SS column was used for the analysis. Mobile phase consisting of sodium dihydrogen phosphate (pH 4.0, 0.05 M) and methanol mixture (25:75, v/v) was used at a flow rate of 1.0 ml/min. The eluate was monitored using a UV detector set at 345 nm. Ratio of peak area of analyte to I.S. was used for quantification of plasma samples. Using this method the absolute recovery of PAT-5A from rat plasma was > 90% and the limit of quantification was 0.05 microg/ml. The intra-day relative standard deviation (RSD) ranged from 2.19 to 4.98% at 1.0 microg/ml, 1.05 to 3.68% at 10.0 microg/ml and 3.14 to 5.08% at 50 microg/ml. The inter-day RSD were 1.6, 2.24 and 1.54% at 1, 10 and 50 microg/ml, respectively. The method was applied to measure the plasma concentrations of PAT-5A in pharmacokinetic and bioavailability studies in male Wistar rats.
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Affiliation(s)
- V V Kumar
- Drug Metabolism and Pharmacokinetics Laboratory, Dr Reddy's Research Foundation, Department of Clinical Research, Aneerpet, Hyderabad, India
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10
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Abstract
Detergency of oily soil is a complex kinetic process that includes contributions from the wash system physical properties, time and temperature of wash, and the hydrodynamic forces exerted during the wash process. Generally, surfactant mixtures that exhibit a low oil-water interfacial tension are considered to provide superior oily soil detergency. In our investigations, we measured the oil-water interfacial tension for C12EO3/NaLAS and C12EO7/NaLAS blends as a function of temperature (18-80 degreesC) and time (0-60 min). The oil-water interfacial tension was found to decrease as a function of time for all blends containing nonionic surfactants, and this decline was most rapid for blends containing a higher fraction of ethoxylated alcohol with less than 3 mol of ethylene oxide. It is proposed that the diffusion of this hydrophobic fraction into the oil phase leads to the measured decline in the oil-water interfacial tension. Also, due to this limitation, no general correlation of oil-water interfacial tension with oily soil removal was observed. In view of these observations, it appears that the measurement of the oil-water interfacial tension (using a spinning drop tensiometer) for solutions containing hydrophobic surfactants may give misleading results. Copyright 1998 Academic Press.
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Affiliation(s)
- S Verma
- Gas Equipment Engineering Corporation, 1240 Oronoque Road, Milford, Connecticut, 06460
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11
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St Geme JW, Kumar VV, Cutter D, Barenkamp SJ. Prevalence and distribution of the hmw and hia genes and the HMW and Hia adhesins among genetically diverse strains of nontypeable Haemophilus influenzae. Infect Immun 1998; 66:364-8. [PMID: 9423882 PMCID: PMC107903 DOI: 10.1128/iai.66.1.364-368.1998] [Citation(s) in RCA: 115] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Nontypeable Haemophilus influenzae is a common cause of human disease and initiates infection by colonizing the upper respiratory tract. In previous work we identified high-molecular-weight adhesins referred to as HMW1 and HMW2, expressed by nontypeable strain 12, and determined that most strains of nontypeable H. influenzae express one or two antigenically related proteins. More recently, we determined that some strains lack HMW1- and HMW2-like proteins and instead express an adhesin called Hia. In the present study, we determined the prevalence and distribution of the hmw and hia genes in a collection of 59 nontypeable strains previously characterized in terms of genetic relatedness. Based on Southern analysis, 47 strains contained sequences homologous to the hmw1 and hmw2 genes and nine strains contained homologs to hia. No strain harbored both hmw and hia, and three strains harbored neither. Although the hmw and hia genes failed to define distinct genetic divisions, the hmw-deficient strains formed small clusters or lineages within the larger population structure. Additional analysis established that the IS1016 insertion element was uniformly absent from strains containing hmw sequences but was present in two-thirds of the hmw-deficient strains. As IS1016 is associated with the capsule locus (cap) in most encapsulated strains of H. influenzae, we speculate that hmw-deficient nontypeable strains evolved more recently from an encapsulated ancestor.
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Affiliation(s)
- J W St Geme
- Edward Mallinckrodt Department of Pediatrics, Washington University School of Medicine, and St. Louis Children's Hospital, Missouri 63110, USA.
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12
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Kumar VV. Junior doctors' hours. Shift work is poisoning juniors. BMJ 1996; 312:187. [PMID: 8563571 PMCID: PMC2349826 DOI: 10.1136/bmj.312.7024.187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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13
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Kumar VV. Lipid molecular shapes and membrane architecture. Indian J Biochem Biophys 1993; 30:135-8. [PMID: 8406542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
A simple biomembrane like erythrocyte contains well over hundred lipid species with diverse molecular shapes differing in the number of acyl chains, chain length, unsaturation and head group composition. A delicate balance between these molecular shapes is necessary in order to have a functional membrane. It is well established that the activities of a number of membrane-bound enzymes and other properties such as aggregation, spontaneous vesiculation, pathophysiological properties and lipid-protein interactions of lipids depend on the acyl chain length, unsaturation and head group composition. In fact, the molecular shape of a phospholipid molecule, as modulated by changes in chain length, unsaturation and head group composition, is probably what is affecting the above mentioned properties. The molecular shape of a lipid depends on a dimensionless packing parameter, S, the value of which influences the size and shape of aggregate formed upon hydration. In fact, the additivity of S values of lipid mixtures explains a number of experimental observations. The molecular shape concept, although very simple, explains many membrane phenomena like complementarity of molecular shapes of non-bilayer lipids to form stable bilayers. Membrane permeability is controlled to a large extent by lipid packing which depends upon molecular shapes. In fact, membranes maintain their lamellar structure by delicately balancing the composition of bilayer-forming and non-bilayer-forming lipids indicating that complementarity of molecular shapes is essential to maintain the permeability barrier. Based on this, the complementary molecular shape model of cell membrane is proposed.
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Affiliation(s)
- V V Kumar
- Surface Chemistry Section, Hindustan Lever Research Centre, Chakala, Bombay, India
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14
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Schmid PC, Kumar VV, Weis BK, Schmid HH. Phosphatidyl-Tris rather than N-acylphosphatidylserine is synthesized by Rhodopseudomonas sphaeroides grown in Tris-containing media. Biochemistry 1991; 30:1746-51. [PMID: 1993190 DOI: 10.1021/bi00221a003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
We have synthesized 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho(N-oleoyl)serine (N-acyl-PS) and 1,2-dioleoyl-sn-glycero-3-phospho-Tris (phosphatidyl-Tris) and have characterized both phospholipids by their chemical and chromatographic properties, as well as by their IR, 13C NMR, and 1H NMR spectra. Comparison of these data with those reported for a phospholipid isolated from Rhodopseudomonas sphaeroides grown in Tris-supplemented media [Donohue et al. (1982) Biochemistry 21, 2765-2773] indicates that R. sphaeroides synthesizes phosphatidyl-Tris rather than N-acyl-PS.
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Affiliation(s)
- P C Schmid
- Hormel Institute, University of Minnesota, Austin 55912
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15
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Kumar VV, Baumann WJ. Lanthanide-induced phosphorus-31 NMR downfield chemical shifts of lysophosphatidylcholines are sensitive to lysophospholipid critical micelle concentration. Biophys J 1991; 59:103-7. [PMID: 2015376 PMCID: PMC1281122 DOI: 10.1016/s0006-3495(91)82202-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Lysophosphatidylcholine (lysoPC) monomers or micelles in water give rise to a narrow, isotropic phosphorus-31 NMR signal (40.6 ppm; v1/2 1.7 Hz; 32.2 MHz). Upon addition of praseodymium ions, the phosphorus signals are shifted downfield. However, the downfield shifts for the longer-chain lysophosphatidylcholines, which exist in the aggregated state, are far greater than those for the shorter-chain homologues, which exist as monomers. At a Pr3+/lysoPC molar ratio of 0.5, the signals of C12lysoPC through C18lysoPC were shifted by 12.1 ppm, whereas the signals of C6lysoPC and C8lysoPC were shifted by only 2.26 ppm. This very pronounced difference in lanthanide-induced downfield shifts between micelles and monomers can be utilized to determine with accuracy lysoPC critical micelle concentrations (CMC) from downfield shift-vs.-concentration plots. The CMC values we determined were 57 mM for C8lysoPC, 5.7 mM for C10lysoPC, and 0.6 mM for C12lysoPC. The shift reagent phosphorus-31 nuclear magnetic resonance technique particularly lends itself to the measurement of CMC values in the millimolar and high micromolar range. The method can equally be used for measuring critical micelle concentrations of short-chain phosphatidylcholines.
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Affiliation(s)
- V V Kumar
- Hormel Institute, University of Minnesota, Austin 55912
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Murari MP, Murari R, Parthasarathy S, Guy CA, Kumar VV, Malewicz B, Baumann WJ. Lyso platelet activating factor (LysoPAF) and its enantiomer. Total synthesis and carbon-13 NMR spectroscopy. Lipids 1990; 25:606-12. [PMID: 2079867 DOI: 10.1007/bf02536010] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Described is a reaction sequence for the total synthesis of lyso platelet activating factor (lysoPAF; 1-O-alkyl-sn-glycero-3-phosphocholine) and its enantiomer. The procedure is versatile and yields optically pure isomers of defined chain length. The synthesis is equally suited for the preparation of lysoPAF analogues and its enantiomers with unsaturation in the long aliphatic chain. First, rac-1(3)-O-alkylglycerol is prepared by alkylation of rac-isopropylideneglycerol with alkyl methanesulfonate followed by acid-catalyzed removal of the ketal group. The primary hydroxy group of alkylglycerol is then protected by tritylation, the secondary hydroxy group is acylated, and the protective trityl group is removed under mild acidic conditions with boric acid on silicic acid, essentially without acyl migration. Condensation of the diradylglycerol with bromoethyl dichlorophosphate in diethyl ether, hydrolysis of the resulting chloride, and nucleophilic displacement of the bromine with trimethylamine gives rac-1-O-alkyl-2-acylglycero-3-phosphocholine in good overall yield. The racemic alkylacylglycerophosphocholine is finally treated with snake venom phospholipase A2 (Ophiophagus hannah) which affords 1-O-alkyl-sn-glycero-3-phosphocholine (lysoPAF) of natural configuration in optically pure form. The "unnatural" 3-O-alkyl-2-O-acyl-sn-glycero-1-phosphocholine enantiomer, which is not susceptible to phospholipase A2 cleavage, gives 3-O-alkyl-sn-glycero-1-phosphocholine upon deacylation with methanolic sodium hydroxide. Homogeneity and structure of the intermediates and final products were ascertained by carbon-13 nuclear magnetic resonance spectroscopy on monomeric solutions.
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Affiliation(s)
- M P Murari
- Section of Bio-Organic Chemistry, Hormel Institute, University of Minnesota, Austin 55912
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Abstract
Gap junctions (GJ) are important regulators of cellular function. They provide channels for the direct movement of small molecules between cells and thus control cell-to-cell transfer of metabolites and the transmission of various stimuli. Gap junctions have been shown to be involved in a multitude of cellular processes ranging from cell synchronization and neuronal function to cell differentiation and carcinogenesis. Much knowledge has been gained in recent years concerning the structure and molecular organization of GJ proteins; yet, the mechanisms that control and modulate gap junction assembly and function are still not well understood. Although it is quite apparent that the GJ proteins assemble in the lipid milieu of the plasma membrane, and that the cluster of proteins assembled in the junction do function in a lipid environment, there is a general paucity of information on the role of lipids in the gap junction assembly process and in the function of gap junctions. The present review is a comprehensive account of current knowledge on gap junction lipids. We also discuss what is known to date on the involvement of lipids in gap junction formation. Special emphasis is being placed on the potential role of membrane cholesterol in gap junction assembly and function.
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Affiliation(s)
- B Malewicz
- Hormel Institute, University of Minnesota, Austin 55912
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Kumar VV, Raju PA, Rao IV. Osteopetrosis reports of four cases. Indian Pediatr 1989; 26:938-42. [PMID: 2634012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Kumar VV, Malewicz B, Baumann WJ. Lysophosphatidylcholine stabilizes small unilamellar phosphatidylcholine vesicles. Phosphorus-31 NMR evidence for the "wedge" effect. Biophys J 1989; 55:789-92. [PMID: 2720071 PMCID: PMC1330562 DOI: 10.1016/s0006-3495(89)82877-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Sonication of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) and 1-palmitoyl-sn-glycero-3-phosphocholine (lysoPC, up to approximately 30 mol %) produces small unilamellar vesicles (SUV, 250-265 A diameter). Phosphorus-31 NMR of the POPC/lysoPC vesicles gives rise to four distinct peaks for POPC and lysoPC in the outer and in the inner bilayer leaflet which can be used to localize and quantify the phospholipids in both vesicle shells. Addition of paramagnetic ions (3 mM Pr3+) enhances outside/inside chemical shift differences and allows monitoring of membrane integrity by the absence of Pr3+ in the vesicle interior. 31P NMR shows that lysoPC in these highly curved POPC/lysoPC vesicles prefers the outer bilayer leaflet. LysoPC incorporation into POPC SUV furthermore causes a substantial and concentration-dependent decrease in spin-spin relaxations (T*2) of the outside POPC phosphorus signals from 55 ms for pure POPC vesicles (v1/2, 5.8 Hz) to 29.5 ms (v1/2, 10.8 Hz) for POPC/lysoPC vesicles containing 25 mol % lysoPC. Our findings are consistent with the idea of a cone-shaped lysoPC molecule which, for geometric reasons, is preferentially accommodated in the outer bilayer leaflet. LysoPC incorporation into POPC SUV restricts POPC headgroup motion and tightens phospholipid packing, but only in the outer bilayer shell.
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Affiliation(s)
- V V Kumar
- Hormel Institute, University of Minnesota, Austin 55912
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Kumar VV, Mahesh BV, Raju VK, Devi KR. Trimethoprim induced intrahepatic cholestasis. Indian Pediatr 1989; 26:181-3. [PMID: 2753538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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Kumar VV, Anderson WH, Thompson EW, Malewicz B, Baumann WJ. Asymmetry of lysophosphatidylcholine/cholesterol vesicles is sensitive to cholesterol modulation. Biochemistry 1988; 27:393-8. [PMID: 3349040 DOI: 10.1021/bi00401a059] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Sonication of lysophosphatidylcholine (lysoPC; 20 mumol/mL) and cholesterol (chol) in aqueous medium produces lamellar structures over a wide range of concentrations. From 25 to 47 mol % cholesterol, electron microscopy (EM) after negative staining showed extended stacklike lamellae about 40 A thick. From 50 to 60 mol % chol, freeze-fracture EM showed homogeneous populations of small unilamellar vesicles averaging 260-310 A in diameter. Phosphorus-31 nuclear magnetic resonance was used to characterize the stacklike lamellae and to measure the distribution of the lysophospholipid between the outer and inner leaflet of the vesicles as a function of sterol concentration. We found that in lysoPC/chol dispersions containing less than equimolar amounts of cholesterol (25-47 mol %), the entire phosphorus signal (40.5 ppm) was shifted downfield by 10.5 ppm upon addition of Pr3+ (2.4 mM), consistent with the stacklike lamellar structures in which all lysoPC head groups are accessible to the ions. By contrast, addition of Pr3+ to lysoPC/chol vesicles containing equimolar or higher amounts of cholesterol (up to 60 mol %) gave rise to two phosphorus peaks. The more intense downfield signal (51.0 ppm) responsive to paramagnetic ions was assigned to lysoPC located in the outer vesicle leaflet. The upfield signal (40.5 ppm), which was not affected by the ions, was assigned to inside lysoPC. For lysoPC/chol (1:1) vesicles, an outside to inside lysophospholipid ratio (Ro/i) of 6.5 was determined. Essentially the same Ro/i value (6.7) was obtained on lysoPC/chol (1:1) vesicles which after dialysis contained only entrapped Pr3+.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- V V Kumar
- Section of Bioorganic Chemistry, University of Minnesota, Austin 55912
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Abstract
The nature of the water pool formed in the reverse micellar system, lecithin/nonpolar solvent/water, has been investigated by means of near infrared, ultraviolet, fluorescence emission and visible spectroscopic techniques. The three nonpolar solvents chosen in this study were benzene, carbon tetrachloride and cyclohexane. Near infrared spectroscopic studies revealed that the amount of water present in the bulk organic phase is negligible at all water concentrations studied in all three solvents. The results of the polarity probe and 8-anilinonaphthalene sulfonic acid (ANSA) fluorescence emission maxima studies indicate that the polarity of the water pool is much lower than that of bulk water. The difference in polarity between the water pool and bulk water decreases with increasing water concentration in benzene and carbon tetrachloride systems. However, in the cyclohexane system, at a water content of 6 moles of water per mole of lecithin, where the system is known to change from isotropic reverse micelle to anisotropic liquid crystalline state, the polarity of the water pool is found to decrease.
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Abstract
Prolonged sonication (3 h) of equimolar amounts of lysophosphatidylcholine (lysoPC) and cholesterol (chol) produces small unilamellar vesicles. Phosphorus-31 NMR (32.20 MHz) of the vesicles gave rise to a single peak (40.5 ppm) which was split upon addition of lanthanide ions. An additional, more intense signal appeared downfield near 51.0 ppm due to 2.4 mM Pr3+, upfield near 34.3 ppm due to 5 mM Yb3+. The more intense signals responsive to paramagnetic ions were assigned to lysoPC located in the outer vesicle leaflet; the signal not shifted by the ions was assigned to inside lysoPC. Based on peak intensities, an outside-to-inside lysoPC ratio (Ro/i) of 6.5-6.6 was determined. Essentially the same Ro/i values (6.6-6.8) were obtained when Pr3+ was present only in the vesicle interior or when Pr3+ was on the inside and Pr3+ and Yb3+ were on the outside. Ion leakage did not occur. Our data demonstrate that lysoPC/chol (1:1) vesicles are drastically asymmetric and that lysoPC shows a distinct preference for the outer bilayer leaflet.
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Rao PL, Kumar VV, Pathak IC, Mitra SK. Small bowel trichobezoar with obstruction and perforation. Indian Pediatr 1979; 16:1041-3. [PMID: 317276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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