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Serra-Bardenys G, Blanco E, Escudero-Iriarte C, Serra-Camprubí Q, Querol J, Pascual-Reguant L, Morancho B, Escorihuela M, Tissera NS, Sabé A, Martín L, Segura-Bayona S, Verde G, Aiese Cigliano R, Millanes-Romero A, Jerónimo C, Cebrià-Costa JP, Nuciforo P, Simonetti S, Viaplana C, Dienstmann R, Oliveira M, Peg V, Stracker TH, Arribas J, Canals F, Villanueva J, Di Croce L, García de Herreros A, Tian TV, Peiró S. LOXL2-mediated chromatin compaction is required to maintain the oncogenic properties of triple-negative breast cancer cells. FEBS J 2024. [PMID: 38451841 DOI: 10.1111/febs.17112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 01/02/2024] [Accepted: 02/23/2024] [Indexed: 03/09/2024]
Abstract
Oxidation of histone H3 at lysine 4 (H3K4ox) is catalyzed by lysyl oxidase homolog 2 (LOXL2). This histone modification is enriched in heterochromatin in triple-negative breast cancer (TNBC) cells and has been linked to the maintenance of compacted chromatin. However, the molecular mechanism underlying this maintenance is still unknown. Here, we show that LOXL2 interacts with RuvB-Like 1 (RUVBL1), RuvB-Like 2 (RUVBL2), Actin-like protein 6A (ACTL6A), and DNA methyltransferase 1associated protein 1 (DMAP1), a complex involved in the incorporation of the histone variant H2A.Z. Our experiments indicate that this interaction and the active form of RUVBL2 are required to maintain LOXL2-dependent chromatin compaction. Genome-wide experiments showed that H2A.Z, RUVBL2, and H3K4ox colocalize in heterochromatin regions. In the absence of LOXL2 or RUVBL2, global levels of the heterochromatin histone mark H3K9me3 were strongly reduced, and the ATAC-seq signal in the H3K9me3 regions was increased. Finally, we observed that the interplay between these series of events is required to maintain H3K4ox-enriched heterochromatin regions, which in turn is key for maintaining the oncogenic properties of the TNBC cell line tested (MDA-MB-231).
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Affiliation(s)
- Gemma Serra-Bardenys
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
- Institut Bonanova FP Sanitaria, Consorci Mar Parc de Salut de Barcelona, Spain
| | - Enrique Blanco
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Spain
| | | | | | - Jessica Querol
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | - Laura Pascual-Reguant
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Spain
| | | | | | | | - Anna Sabé
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | - Luna Martín
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | | | - Gaetano Verde
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | | | - Alba Millanes-Romero
- Institute for Research in Biomedicine (IRB Barcelona) and Barcelona Institute of Science and Technology, Spain
| | - Celia Jerónimo
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Spain
- Institut de Recherches Cliniques de Montréal, Canada
| | | | - Paolo Nuciforo
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | - Sara Simonetti
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | | | | | - Mafalda Oliveira
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
- Medical Oncology Department, Vall d'Hebron University Hospital, Barcelona, Spain
| | - Vicente Peg
- Medical Oncology Department, Vall d'Hebron University Hospital, Barcelona, Spain
- Centro de Investigación Biomédica en Red en Oncología (CIBERONC), Barcelona, Spain
- Vall d'Hebron Research Institute (VHIR), Barcelona, Spain
- Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Bellaterra, Spain
| | - Travis H Stracker
- Radiation Oncology Branch, National Cancer Institute, Bethesda, MD, USA
| | - Joaquín Arribas
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
- Vall d'Hebron Research Institute (VHIR), Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
- Programa de Recerca en Càncer, Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), Barcelona, Spain
| | - Francesc Canals
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | | | - Luciano Di Croce
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
| | - Antonio García de Herreros
- Programa de Recerca en Càncer, Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), Barcelona, Spain
- Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona, Spain
| | - Tian V Tian
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
| | - Sandra Peiró
- Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain
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2
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Machuca-Márquez P, Sánchez-Benito L, Menardy F, Urpi A, Girona M, Puighermanal E, Appiah I, Palmiter RD, Sanz E, Quintana A. Vestibular CCK signaling drives motion sickness-like behavior in mice. Proc Natl Acad Sci U S A 2023; 120:e2304933120. [PMID: 37847729 PMCID: PMC10622874 DOI: 10.1073/pnas.2304933120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 08/23/2023] [Indexed: 10/19/2023] Open
Abstract
Travel can induce motion sickness (MS) in susceptible individuals. MS is an evolutionary conserved mechanism caused by mismatches between motion-related sensory information and past visual and motion memory, triggering a malaise accompanied by hypolocomotion, hypothermia, hypophagia, and nausea. Vestibular nuclei (VN) are critical for the processing of movement input from the inner ear. Motion-induced activation of VN neurons recapitulates MS-related signs. However, the genetic identity of VN neurons mediating MS-related autonomic and aversive responses remains unknown. Here, we identify a central role of cholecystokinin (CCK)-expressing VN neurons in motion-induced malaise. Moreover, we show that CCK VN inputs onto the parabrachial nucleus activate Calca-expressing neurons and are sufficient to establish avoidance to novel food, which is prevented by CCK-A receptor antagonism. These observations provide greater insight into the neurobiological regulation of MS by identifying the neural substrates of MS and providing potential targets for treatment.
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Affiliation(s)
| | - Laura Sánchez-Benito
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
- Department of Cell Biology, Physiology and Immunology, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Fabien Menardy
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Andrea Urpi
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Mònica Girona
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Emma Puighermanal
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Isabella Appiah
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Richard D. Palmiter
- HHMI, University of Washington, Seattle, WA98195
- Department of Biochemistry, University of Washington, Seattle, WA98195
| | - Elisenda Sanz
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
- Department of Cell Biology, Physiology and Immunology, Universitat Autònoma de Barcelona, Barcelona08193, Spain
| | - Albert Quintana
- Institut de Neurociències, Universitat Autònoma de Barcelona, Barcelona08193, Spain
- Department of Cell Biology, Physiology and Immunology, Universitat Autònoma de Barcelona, Barcelona08193, Spain
- Focus Area for Human Metabolomics, Faculty of Natural and Agricultural Sciences, North-West University, Potchefstroom2520, South Africa
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3
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Garcia-Lopez MT, Serrano MS, Camiletti BX, Gordon A, Estudillo C, Trapero A, Diez CM, Moral J. Study of the competition between Colletotrichum godetiae and C. nymphaeae, two pathogenic species in olive. Sci Rep 2023; 13:5344. [PMID: 37005485 PMCID: PMC10067957 DOI: 10.1038/s41598-023-32585-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 03/29/2023] [Indexed: 04/04/2023] Open
Abstract
Olive anthracnose, a critical olive fruit disease that adversely impacts oil quality, is caused by Colletotrichum species. A dominant Colletotrichum species and several secondary species have been identified in each olive-growing region. This study surveys the interspecific competition between C. godetiae, dominant in Spain, and C. nymphaeae, prevalent in Portugal, to shed light on the cause of this disparity. When Petri-dishes of Potato Dextrose Agar (PDA) and diluted PDA were co-inoculated with spore mixes produced by both species, C. godetiae displaced C. nymphaeae, even if the percentage of spores in the initial spore mix inoculation was just 5 and 95%, respectively. The C. godetiae and C. nymphaeae species showed similar fruit virulence in separate inoculations in both cultivars, the Portuguese cv. Galega Vulgar and the Spanish cv. Hojiblanca, and no cultivar specialization was observed. However, when olive fruits were co-inoculated, the C. godetiae species showed a higher competitive ability and partially displaced the C. nymphaeae species. Furthermore, both Colletotrichum species showed a similar leaf survival rate. Lastly, C. godetiae was more resistant to metallic copper than C. nymphaeae. The work developed here allows a deeper understanding of the competition between C. godetiae and C. nymphaeae, which could lead to developing strategies for more efficient disease risk assessment.
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Affiliation(s)
- M Teresa Garcia-Lopez
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain
- Department of Plant Pathology, University of California-Davis, Kearney Agricultural Research and Extension Center, Parlier, CA, 93648, USA
| | - M Socorro Serrano
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain
| | - Boris X Camiletti
- Department of Plant Pathology, University of California-Davis, Kearney Agricultural Research and Extension Center, Parlier, CA, 93648, USA
| | - Ana Gordon
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain
| | - Cristina Estudillo
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain
| | - Antonio Trapero
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain
| | - Concepcion M Diez
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain
| | - Juan Moral
- Department of Agronomy, Maria de Maeztu Excellence Unit, University of Cordoba, Edif. C4, Campus de Rabanales, 14071, Cordoba, Spain.
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4
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de los Ríos C, Viejo L, Carretero VJ, Juárez NH, Cruz-Martins N, Hernández-Guijo JM. Promising Molecular Targets in Pharmacological Therapy for Neuronal Damage in Brain Injury. Antioxidants (Basel) 2023; 12:118. [PMID: 36670980 PMCID: PMC9854812 DOI: 10.3390/antiox12010118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 12/19/2022] [Accepted: 12/27/2022] [Indexed: 01/05/2023] Open
Abstract
The complex etiopathogenesis of brain injury associated with neurodegeneration has sparked a lot of studies in the last century. These clinical situations are incurable, and the currently available therapies merely act on symptoms or slow down the course of the diseases. Effective methods are being sought with an intent to modify the disease, directly acting on the properly studied targets, as well as to contribute to the development of effective therapeutic strategies, opening the possibility of refocusing on drug development for disease management. In this sense, this review discusses the available evidence for mitochondrial dysfunction induced by Ca2+ miscommunication in neurons, as well as how targeting phosphorylation events may be used to modulate protein phosphatase 2A (PP2A) activity in the treatment of neuronal damage. Ca2+ tends to be the catalyst for mitochondrial dysfunction, contributing to the synaptic deficiency seen in brain injury. Additionally, emerging data have shown that PP2A-activating drugs (PADs) suppress inflammatory responses by inhibiting different signaling pathways, indicating that PADs may be beneficial for the management of neuronal damage. In addition, a few bioactive compounds have also triggered the activation of PP2A-targeted drugs for this treatment, and clinical studies will help in the authentication of these compounds. If the safety profiles of PADs are proven to be satisfactory, there is a case to be made for starting clinical studies in the setting of neurological diseases as quickly as possible.
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Affiliation(s)
- Cristóbal de los Ríos
- Department of Pharmacology and Therapeutic and Teófilo Hernando Institute, Faculty of Medicine, University Autónoma de Madrid, C/. Arzobispo Morcillo 4, 28029 Madrid, Spain
- Departamento de Ciencias Básicas de la Salud, University Rey Juan Carlos, Avda. Atenas s/n, 28922 Alcorcón, Spain
| | - Lucía Viejo
- Department of Pharmacology and Therapeutic and Teófilo Hernando Institute, Faculty of Medicine, University Autónoma de Madrid, C/. Arzobispo Morcillo 4, 28029 Madrid, Spain
| | - Victoria Jiménez Carretero
- Department of Pharmacology and Therapeutic and Teófilo Hernando Institute, Faculty of Medicine, University Autónoma de Madrid, C/. Arzobispo Morcillo 4, 28029 Madrid, Spain
| | - Natalia Hernández Juárez
- Department of Pharmacology and Therapeutic and Teófilo Hernando Institute, Faculty of Medicine, University Autónoma de Madrid, C/. Arzobispo Morcillo 4, 28029 Madrid, Spain
| | - Natália Cruz-Martins
- Faculty of Medicine, Institute for Research and Innovation in Health (i3S), University of Porto, 4200-319 Porto, Portugal
- Institute for Research and Advanced Training in Health Sciences and Technologies, Rua Central de Gandra, 1317, 4585-116 Gandra, Portugal
| | - Jesús M. Hernández-Guijo
- Department of Pharmacology and Therapeutic and Teófilo Hernando Institute, Faculty of Medicine, University Autónoma de Madrid, C/. Arzobispo Morcillo 4, 28029 Madrid, Spain
- Ramón y Cajal Institute for Health Research, IRYCIS, Hospital Ramón y Cajal, Ctra. de Colmenar Viejo, Km. 9,100, 28029 Madrid, Spain
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5
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Muñoz A, Santamaria ME, Fernández-Bautista N, Mangano S, Toribio R, Martínez M, Berrocal-Lobo M, Diaz I, Castellano MM. The co-chaperone HOP3 participates in jasmonic acid signaling by regulating CORONATINE-INSENSITIVE 1 activity. Plant Physiol 2021; 187:1679-1689. [PMID: 34618051 PMCID: PMC8566277 DOI: 10.1093/plphys/kiab334] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 06/21/2021] [Indexed: 05/25/2023]
Abstract
HOPs (HSP70-HSP90 organizing proteins) are a highly conserved family of HSP70 and HSP90 co-chaperones whose role in assisting the folding of various hormonal receptors has been extensively studied in mammals. In plants, HOPs are mainly associated with stress response, but their potential involvement in hormonal networks remains completely unexplored. In this article we describe that a member of the HOP family, HOP3, is involved in the jasmonic acid (JA) pathway and is linked to plant defense responses not only to pathogens, but also to a generalist herbivore. The JA pathway regulates responses to Botrytis cinerea infection and to Tetranychus urticae feeding; our data demonstrate that the Arabidopsis (Arabidopsis thaliana) hop3-1 mutant shows an increased susceptibility to both. The hop3-1 mutant exhibits reduced sensitivity to JA derivatives in root growth assays and downregulation of different JA-responsive genes in response to methyl jasmonate, further revealing the relevance of HOP3 in the JA pathway. Interestingly, yeast two-hybrid assays and in planta co-immunoprecipitation assays found that HOP3 interacts with COI1, suggesting that COI1 is a target of HOP3. Consistent with this observation, COI1 activity is reduced in the hop3-1 mutant. All these data strongly suggest that, specifically among HOPs, HOP3 plays a relevant role in the JA pathway by regulating COI1 activity in response to JA and, consequently, participating in defense signaling to biotic stresses.
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Affiliation(s)
- Alfonso Muñoz
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Departamento de Botánica, Ecología y Fisiología Vegetal, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba 14071, Spain
| | - M Estrella Santamaria
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
| | - Nuria Fernández-Bautista
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
| | - Silvina Mangano
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Fundación Instituto Leloir and Instituto de Investigaciones Bioquímicas de Buenos Aires (IIBA, CONICET), Av. Patricias Argentinas 435, Buenos Aires, C1405BWE, Argentina
| | - René Toribio
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
| | - Manuel Martínez
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, UPM 28040, Madrid, Spain
| | - Marta Berrocal-Lobo
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Departamento de Sistemas y Recursos Naturales, E.T.S.I. Montes, Forestal y del Medio Natural, Ciudad Universitaria s/n, 28040, Madrid, Spain
| | - Isabel Diaz
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, UPM 28040, Madrid, Spain
| | - M Mar Castellano
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
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6
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Salazar‐Roa M, Trakala M, Álvarez‐Fernández M, Valdés‐Mora F, Zhong C, Muñoz J, Yu Y, Peters TJ, Graña‐Castro O, Serrano R, Zapatero‐Solana E, Abad M, Bueno MJ, de Cedrón MG, Fernández‐Piqueras J, Serrano M, Blasco MA, Wang D, Clark SJ, Izpisua‐Belmonte JC, Ortega S, Malumbres M. Transient exposure to miR-203 enhances the differentiation capacity of established pluripotent stem cells. EMBO J 2020; 39:e104324. [PMID: 32614092 PMCID: PMC7429746 DOI: 10.15252/embj.2019104324] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 05/27/2020] [Accepted: 05/28/2020] [Indexed: 11/09/2022] Open
Abstract
Full differentiation potential along with self-renewal capacity is a major property of pluripotent stem cells (PSCs). However, the differentiation capacity frequently decreases during expansion of PSCs in vitro. We show here that transient exposure to a single microRNA, expressed at early stages during normal development, improves the differentiation capacity of already-established murine and human PSCs. Short exposure to miR-203 in PSCs (miPSCs) induces a transient expression of 2C markers that later results in expanded differentiation potency to multiple lineages, as well as improved efficiency in tetraploid complementation and human-mouse interspecies chimerism assays. Mechanistically, these effects are at least partially mediated by direct repression of de novo DNA methyltransferases Dnmt3a and Dnmt3b, leading to transient and reversible erasure of DNA methylation. These data support the use of transient exposure to miR-203 as a versatile method to reset the epigenetic memory in PSCs, and improve their effectiveness in regenerative medicine.
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Affiliation(s)
- María Salazar‐Roa
- Cell Division and Cancer GroupSpanish National Cancer Research Centre (CNIO)MadridSpain
| | - Marianna Trakala
- Cell Division and Cancer GroupSpanish National Cancer Research Centre (CNIO)MadridSpain
| | | | - Fátima Valdés‐Mora
- Epigenetics Research Program, Genomics and Epigenetics DivisionGarvan Institute of Medical ResearchSydneyNSWAustralia
- St. Vincent's Clinical SchoolUNSW, SydneySydneyNSWAustralia
| | - Cuiqing Zhong
- Gene Expression LaboratoryThe Salk Institute for Biological StudiesLa JollaCAUSA
| | | | - Yang Yu
- Gene Expression LaboratoryThe Salk Institute for Biological StudiesLa JollaCAUSA
| | - Timothy J Peters
- Epigenetics Research Program, Genomics and Epigenetics DivisionGarvan Institute of Medical ResearchSydneyNSWAustralia
| | | | | | | | | | - María José Bueno
- Cell Division and Cancer GroupSpanish National Cancer Research Centre (CNIO)MadridSpain
| | - Marta Gómez de Cedrón
- Cell Division and Cancer GroupSpanish National Cancer Research Centre (CNIO)MadridSpain
| | - José Fernández‐Piqueras
- Centro de Biología Molecular Severo Ochoa (CBMSO)Consejo Superior de Investigaciones Científicas‐Universidad Autónoma de Madrid (CSIC‐UAM)MadridSpain
- Centro de Investigación Biomédica en Red para Enfermedades Raras (CIBERER)Instituto de Salud Carlos IIIMadridSpain
- Instituto de Investigación BiosanitariaFundación Jimenez DíazMadridSpain
| | - Manuel Serrano
- Tumor Suppression GroupCNIOMadridSpain
- Institute for Research in Biomedicine (IRB Barcelona)The Barcelona Institute of Science and Technology (BIST)BarcelonaSpain
- Catalan Institution for Research and Advanced Studies (ICREA)BarcelonaSpain
| | | | - Da‐Zhi Wang
- Cardiovascular Research DivisionBoston Children′s HospitalHarvard Medical SchoolBostonMAUSA
| | - Susan J Clark
- Epigenetics Research Program, Genomics and Epigenetics DivisionGarvan Institute of Medical ResearchSydneyNSWAustralia
- St. Vincent's Clinical SchoolUNSW, SydneySydneyNSWAustralia
| | | | | | - Marcos Malumbres
- Cell Division and Cancer GroupSpanish National Cancer Research Centre (CNIO)MadridSpain
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7
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Ochoa-Hueso R, Borer ET, Seabloom EW, Hobbie SE, Risch AC, Collins SL, Alberti J, Bahamonde HA, Brown CS, Caldeira MC, Daleo P, Dickman CR, Ebeling A, Eisenhauer N, Esch EH, Eskelinen A, Fernández V, Güsewell S, Gutierrez-Larruga B, Hofmockel K, Laungani R, Lind E, López A, McCulley RL, Moore JL, Peri PL, Power SA, Price JN, Prober SM, Roscher C, Sarneel JM, Schütz M, Siebert J, Standish RJ, Velasco Ayuso S, Virtanen R, Wardle GM, Wiehl G, Yahdjian L, Zamin T. Microbial processing of plant remains is co-limited by multiple nutrients in global grasslands. Glob Chang Biol 2020; 26:4572-4582. [PMID: 32520438 DOI: 10.1111/gcb.15146] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Accepted: 03/19/2020] [Indexed: 06/11/2023]
Abstract
Microbial processing of aggregate-unprotected organic matter inputs is key for soil fertility, long-term ecosystem carbon and nutrient sequestration and sustainable agriculture. We investigated the effects of adding multiple nutrients (nitrogen, phosphorus and potassium plus nine essential macro- and micro-nutrients) on decomposition and biochemical transformation of standard plant materials buried in 21 grasslands from four continents. Addition of multiple nutrients weakly but consistently increased decomposition and biochemical transformation of plant remains during the peak-season, concurrent with changes in microbial exoenzymatic activity. Higher mean annual precipitation and lower mean annual temperature were the main climatic drivers of higher decomposition rates, while biochemical transformation of plant remains was negatively related to temperature of the wettest quarter. Nutrients enhanced decomposition most at cool, high rainfall sites, indicating that in a warmer and drier future fertilized grassland soils will have an even more limited potential for microbial processing of plant remains.
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Affiliation(s)
- Raúl Ochoa-Hueso
- Department of Biology, IVAGRO, University of Cádiz, Campus de Excelencia Internacional Agroalimentario (ceiA3), Cádiz, Spain
| | - Elizabeth T Borer
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN, USA
| | - Eric W Seabloom
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN, USA
| | - Sarah E Hobbie
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN, USA
| | - Anita C Risch
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Scott L Collins
- Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Juan Alberti
- Instituto de Investigaciones Marinas y Costeras (IIMyC), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Mar del Plata, Argentina
| | - Héctor A Bahamonde
- Instituto Nacional de Tecnología Agropecuaria (INTA), Universidad Nacional de la Patagonia Austral (UNPA)-CONICET, Rio Gallegos, Argentina
| | - Cynthia S Brown
- Graduate Degree Program in Ecology, Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA
| | - Maria C Caldeira
- Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa, Lisbon, Portugal
| | - Pedro Daleo
- Instituto de Investigaciones Marinas y Costeras (IIMyC), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Mar del Plata, Argentina
| | - Chris R Dickman
- Desert Ecology Research Group, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
| | - Anne Ebeling
- Institute of Ecology and Evolution, Friedrich-Schiller-University Jena, Jena, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - Ellen H Esch
- Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
| | - Anu Eskelinen
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Physiological Diversity, Helmholtz Center for Environmental Research - UFZ, Leipzig, Germany
- Ecology and Genetics, University of Oulu, Oulu, Finland
| | - Victoria Fernández
- Forest Genetics and Ecophysiology Research Group, School of Forest Engineering, Technical University of Madrid, Madrid, Spain
| | - Sabine Güsewell
- Institute of Integrative Biology, ETH Zurich, Zürich, Switzerland
| | | | - Kirsten Hofmockel
- Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA, USA
- Environmental and Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA
| | | | - Eric Lind
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN, USA
| | - Andrea López
- Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Rebecca L McCulley
- Department of Plant & Soil Sciences, University of Kentucky, Lexington, KY, USA
| | - Joslin L Moore
- School of Biological Sciences, Monash University, Clayton Campus, Vic., Australia
| | - Pablo L Peri
- Instituto Nacional de Tecnología Agropecuaria (INTA), Universidad Nacional de la Patagonia Austral (UNPA)-CONICET, Rio Gallegos, Argentina
| | - Sally A Power
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Jodi N Price
- Institute of Land, Water and Society, Charles Sturt University, Albury, NSW, Australia
| | | | - Christiane Roscher
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Ecology and Genetics, University of Oulu, Oulu, Finland
| | - Judith M Sarneel
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
| | - Martin Schütz
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Julia Siebert
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - Rachel J Standish
- Environmental and Conservation Sciences, Murdoch University, Murdoch, WA, Australia
| | - Sergio Velasco Ayuso
- Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura (IFEVA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Risto Virtanen
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Physiological Diversity, Helmholtz Center for Environmental Research - UFZ, Leipzig, Germany
- Ecology and Genetics, University of Oulu, Oulu, Finland
| | - Glenda M Wardle
- Desert Ecology Research Group, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
| | - Georg Wiehl
- CSIRO Land and Water, Wembley, WA, Australia
| | - Laura Yahdjian
- Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura (IFEVA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Tara Zamin
- School of Biological Sciences, Monash University, Clayton Campus, Vic., Australia
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8
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Abstract
We report herein a visible light-mediated C-H hydroxyalkylation of quinolines and isoquinolines that proceeds via a radical path. The process exploits the excited-state reactivity of 4-acyl-1,4-dihydropyridines, which can readily generate acyl radicals upon blue light absorption. By avoiding the need for external oxidants, this radical-generating strategy enables a departure from the classical, oxidative Minisci-type pattern and unlocks a unique reactivity, leading to hydroxyalkylated heteroarenes. Mechanistic investigations provide evidence that a radical-mediated spin-center shift is the key step of the process. The method's mild reaction conditions and high functional group tolerance accounted for the late-stage functionalization of active pharmaceutical ingredients and natural products.
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Affiliation(s)
- Bartosz Bieszczad
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans 16 –43007TarragonaSpain
| | - Luca Alessandro Perego
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans 16 –43007TarragonaSpain
| | - Paolo Melchiorre
- ICREAPasseig Lluís Companys 2308010BarcelonaSpain
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans 16 –43007TarragonaSpain
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9
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Gandolfo E, Tang X, Raha Roy S, Melchiorre P. Photochemical Asymmetric Nickel-Catalyzed Acyl Cross-Coupling. Angew Chem Int Ed Engl 2019; 58:16854-16858. [PMID: 31532568 PMCID: PMC6900114 DOI: 10.1002/anie.201910168] [Citation(s) in RCA: 71] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 09/17/2019] [Indexed: 11/29/2022]
Abstract
Photochemical enantioselective nickel-catalyzed cross-coupling reactions are difficult to implement. We report a visible-light-mediated strategy that successfully couples symmetrical anhydrides and 4-alkyl dihydropyridines (DHPs) to afford enantioenriched α-substituted ketones under mild conditions. The chemistry does not require exogenous photocatalysts. It is triggered by the direct excitation of DHPs, which act as a radical source and as a reductant, facilitating the turnover of the chiral catalytic nickel complex.
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Affiliation(s)
- Eugenio Gandolfo
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans16-43007TarragonaSpain
| | - Xinjun Tang
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans16-43007TarragonaSpain
| | - Sudipta Raha Roy
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans16-43007TarragonaSpain
| | - Paolo Melchiorre
- ICREAPasseig Lluís Companys 2308010BarcelonaSpain
- ICIQ – Institute of Chemical Research of Catalonia, the Barcelona Institute of Science and TechnologyAvenida Països Catalans16-43007TarragonaSpain
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10
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van Leeuwen T, Buzzetti L, Perego LA, Melchiorre P. A Redox-Active Nickel Complex that Acts as an Electron Mediator in Photochemical Giese Reactions. Angew Chem Int Ed Engl 2019; 58:4953-4957. [PMID: 30747467 PMCID: PMC6519288 DOI: 10.1002/anie.201814497] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 02/11/2019] [Indexed: 01/06/2023]
Abstract
We report a simple protocol for the photochemical Giese addition of C(sp3 )-centered radicals to a variety of electron-poor olefins. The chemistry does not require external photoredox catalysts. Instead, it harnesses the excited-state reactivity of 4-alkyl-1,4-dihydropyridines (4-alkyl-DHPs) to generate alkyl radicals. Crucial for reactivity is the use of a catalytic amount of Ni(bpy)3 2+ (bpy=2,2'-bipyridyl), which acts as an electron mediator to facilitate the redox processes involving fleeting and highly reactive intermediates.
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Affiliation(s)
- Thomas van Leeuwen
- ICIQ—Institute of Chemical Research of Catalonia the Barcelona Institute of Science and TechnologyAvenida Països Catalans 1643007TarragonaSpain
| | - Luca Buzzetti
- IIT—Istituto Italiano di TecnologiaLaboratory of Asymmetric Catalysis and Photochemistryvia Morego 3016163GenoaItaly
| | - Luca Alessandro Perego
- ICIQ—Institute of Chemical Research of Catalonia the Barcelona Institute of Science and TechnologyAvenida Països Catalans 1643007TarragonaSpain
| | - Paolo Melchiorre
- ICREA—Catalan Institution for Research and Advanced StudiesPasseig Lluís Companys 2308010BarcelonaSpain
- IIT—Istituto Italiano di TecnologiaLaboratory of Asymmetric Catalysis and Photochemistryvia Morego 3016163GenoaItaly
- ICIQ—Institute of Chemical Research of Catalonia the Barcelona Institute of Science and TechnologyAvenida Països Catalans 1643007TarragonaSpain
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