Genotype diversity and antibiotic resistance risk in Aeromonas hydrophila in Sichuan, China

Sichuan is a significant aquaculture province in China, with a total aquaculture output of 1.72 × 106 tons in 2022. One of the most significant microorganisms hurting the Sichuan aquaculture is Aeromonas hydrophila, whose genotype and antibiotic resistance are yet unknown. This study isolated a total of 64 strains of A. hydrophila from various regions during September 2019 to June 2021 within Sichuan province, China. The technique of Multi-Locus Sequence Typing (MLST) was used for the purpose of molecular typing. Meanwhile, identification of antibiotic resistance phenotype and antibiotic resistance gene was performed. The findings of the study revealed that 64 isolates exhibited 29 sequence types (ST) throughout different regions in Sichuan, with 25 of these ST types being newly identified. Notably, the ST251 emerged as the predominant sequence type responsible for the pandemic. The resistance rate of isolated strains to roxithromycin was as high as 98.3%, followed by co-trimoxazole (87.5%), sulfafurazole (87.5%), imipenem (80%), amoxicillin (60%), and clindamycin (57.8%). Fifteen strains of A. hydrophila exhibited resistance to medicines across a minimum of three categories, suggesting the development of multidrug resistance in these isolates. A total of 63 ARGs were detected from the isolates, which mediated a range of antibiotic resistance mechanisms, with deactivation and efflux potentially serving as the primary mechanisms of antibiotic resistance. This study revealed the diversity of A. hydrophila genotypes and the risk of antibiotic resistance in Sichuan, providing reference for scientific and effective control of A. hydrophila infection.

Epigenetic analytical approaches in ecotoxicological aquatic research

Environmental epigenetics has become a key research focus in global climate change studies and environmental pollutant investigations impacting aquatic ecosystems. Specifically, triggered by environmental stress conditions, intergenerational DNA methylation changes contribute to biological adaptive responses and survival of organisms to increase their tolerance towards these conditions. To critically review epigenetic analytical approaches in ecotoxicological aquatic research, we evaluated 78 publications reported over the past five years (2016-2021) that applied these methods to investigate the responses of aquatic organisms to environmental changes and pollution. The results show that DNA methylation appears to be the most robust epigenetic regulatory mark studied in aquatic animals. As such, multiple DNA methylation analysis methods have been developed in aquatic organisms, including enzyme restriction digestion-based and methyl-specific immunoprecipitation methods, and bisulfite (in)dependent sequencing strategies. In contrast, only a handful of aquatic studies, i.e. about 15%, have been focusing on histone variants and post-translational modifications due to the lack of species-specific affinity based immunological reagents, such as specific antibodies for chromatin immunoprecipitation applications. Similarly, ncRNA regulation remains as the least popular method used in the field of environmental epigenetics. Insights into the opportunities and challenges of the DNA methylation and histone variant analysis methods as well as decreasing costs of next generation sequencing approaches suggest that large-scale epigenetic environmental studies in model and non-model organisms will soon become available in the near future. Moreover, antibody-dependent and independent methods, such as mass spectrometry-based methods, can be used as an alternative epigenetic approach to characterize global changes of chromatin histone modifications in future aquatic research. Finally, a systematic guide for DNA methylation and histone variant methods is offered for ecotoxicological aquatic researchers to select the most relevant epigenetic analytical approach in their research.

Environmental DNA study on aquatic ecosystem monitoring and management: Recent advances and prospects

Environmental DNA (eDNA) is organismal DNA that can be detected in the environment and is derived from cellular material of organisms shed into aquatic or terrestrial environments. It can be sampled and monitored using molecular methods, which is important for the early detection of invasive and native species as well as the discovery of rare and cryptic species. While few reviews have summarized the latest findings on eDNA for most aquatic animal categories in the aquatic ecosystem, especially for aquatic eDNA processing and application. In the present review, we first performed a bibliometric network analysis of eDNA studies on aquatic animals. Subsequently, we summarized the abiotic and biotic factors affecting aquatic eDNA occurrence. We also systematically discussed the relevant experiments and analyses of aquatic eDNA from various aquatic organisms, including fish, molluscans, crustaceans, amphibians, and reptiles. Subsequently, we discussed the major achievements of eDNA application in studies on the aquatic ecosystem and environment. The application of eDNA will provide an entirely new paradigm for biodiversity conservation, environment monitoring, and aquatic species management at a global scale.

Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals

Vibrio cholerae can cause pandemic cholera in humans. The bacterium resides in aquatic environments worldwide. Identification of risk factors of V. cholerae in aquatic products is imperative for assuming food safety. In this study, we determined virulence-associated genes, cross-resistance between antibiotics and heavy metals, and genome fingerprinting profiles of non O1/O139 V. cholerae isolates (n = 20) recovered from 16 species of consumable aquatic animals. Secretomes and proteomes of V. cholerae with distinct genotypes and phenotypes were obtained by using two-dimensional gel electrophoresis (2D-GE) and/or liquid chromatography-tandem mass spectrometry (LC-MS/MS) techniques. Comparative secretomic analysis revealed 4 common and 45 differential extracellular proteins among 20 V. cholerae strains, including 13 virulence- and 8 resistance-associated proteins. A total of 21,972 intracellular proteins were identified, and comparative proteomic analysis revealed 215 common and 913 differential intracellular proteins, including 22 virulence- and 8 resistance-associated proteins. Additionally, different secretomes and proteomes were observed between V. cholerae isolates of fish and shellfish origins. A number of novel proteins with unknown function and strain-specific proteins were also discovered in the V. cholerae isolates. SIGNIFICANCE: V. cholerae can cause pandemic cholera in humans. The bacterium is distributed in aquatic environments worldwide. Identification of risk factors of V. cholerae in aquatic products is imperative for assuming food safety. Non-O1/O139 V. cholerae has been reported to cause sporadic cholera-like diarrhea and bacteremia diseases, which indicates virulence factors rather than the major cholera toxin (CT) exist. This study for the first time investigated proteomes and secretomes of non-O1/O139 V. cholerae originating from aquatic animals. This resulted in the identification of a number of virulence and coresistance-related factors, as well as novel proteins and strain-specific proteins in V. cholerae isolates recovered from 16 species of consumable aquatic animals. These results fill gaps for better understanding of pathogenesis and resistance of V. cholerae, and also support the increasing need for novel diagnosis and vaccine targets against the leading waterborne pathogen worldwide.

Examples of proper reporting for evaluation (Stage 2 validation) of diagnostic tests for diseases listed by the World Organisation for Animal Health

Reporting and design standards are key indicators of the quality of diagnostic accuracy (validation) studies but, with the exception of aquatic animal diseases and paratuberculosis in ruminants, there is limited guidance for designing these studies in animals. There is, therefore, a need for generic guidelines that are based on disease characteristics, such as mode of transmission, latent period and pathogenesis. Comprehensive, clear and transparent reporting of primary test accuracy studies for diseases listed by the World Organisation for Animal Health (OIE) has value for the end users of diagnostic tests and, ultimately, for decision-makers, who require systematic reviews and meta-analysis of multiple tests for specified diseases and testing purposes. The recent publication of reporting standards for Bayesian latent class models, to analyse test-accuracy data from naturally occurring disease events, fills an important gap as these methods are being increasingly used for OIE-listed diseases. Adherence to design and reporting standards, as well as to guidelines, helps to ensure that research funding for test validation studies is used appropriately and that the strengths and limitations of single tests or test combinations are made clear to test users. The authors provide a review of key points that are often overlooked or misinterpreted in test validation studies, as well as two concrete examples of good practice for use as a reference point for future studies.

The cardiotoxicity of the common carp (Cyprinus carpio) exposed to environmentally relevant concentrations of arsenic and subsequently relieved by zinc supplementation

Waterborne exposure to arsenic trioxide (As₂O₃) is inevitable due to its widespread industrial and agricultural applications. Oxidative stress and cascaded programmed cell death is now hypothesized to be the dominant mechanisms of arseniasis evidenced in vivo and in vitro. This study aimed to explore the interaction of divalent zinc ion (Zn²⁺), an efficient reactive oxygen species (ROS) scavenger with arsenite in the heart of common carp, and extensively investigated the exact signaling molecules involved. Significant induction of cardiotoxicity including oxidative stress, apoptosis and autophagy was evident in heart tissues following arsenite exposure (P < 0.05). The dissipation of antioxidant enzymes (SOD and CAT) was induced by ROS burst, leading to oxidative damage and lipid peroxidation (MDA). Arsenite induced classic apoptotic hallmarks, characterized by chromatin degradation and subsequent formation of clumps adjacent, and elevated expression of Bax/Bcl-2 and Caspase family, and also increased autophagic flux evidenced by accelerated formation (LC3) and degradation (p62) of autophagosomes. PI3K/Akt/mTOR pathway was phosphorylated inhibited, while MAPK signaling (p38, ERK and JNK) displayed elevated phosphorylation levels in arsenite-exposed heart tissues. In contrast, above phenomena were effectively inhibited by Zn²⁺, which supplement attenuated arsenite-induced myocardial toxicity through inhibition of apoptosis and autophagy via PI3K/Akt/mTOR pathway, as well as suppressing intracellular ROS cluster via activating antioxidative system via MAPK pathway. Our results provided experimental explanation and evidences for cardiotoxicity of arsenite. Furthermore, our findings hint that the application of zinc preparations may provide a candidate for the prevention and treatment for arsenic poisoning.

Effects of electronic waste on cytogenetic and physiological changes in snakehead fish (Channa striata)

The objectives of this study were to investigate cadmium (Cd), chromium (Cr), and lead (Pb) concentrations in water and sediment as well as the muscle, gill, and liver of snakehead fish (Channa striata) and to reveal chromosomal aberrations, changes in serum biochemical parameters, and histopathological alterations of fish from a reservoir near an electronic waste dumping area. Cd, Cr, and Pb concentrations were determined using inductively coupled plasma optical emission spectrometry. Chromosomal aberrations were studied in kidney cells using a conventional technique. The biochemical parameters were measured using an automated analyzer, and histopathological photographs were obtained using a transmission electron microscope. The results showed that heavy-metal concentrations in water and sediment did not exceed the standards, whereas Cd and Pb concentrations in the gill and liver exceeded the standards. The accumulation pattern of heavy metals in organ tissues was exhibited according to the following order: gill > liver > muscle. Five types of chromosomal aberrations were a centromere gap, single chromatid break, deletion, single chromatid gap, and fragmentation. The average percentages of chromosomal aberrations in polluted and reference C. striata were 4.60% and 1.00%, respectively. The statistical analyses of chromosomal aberration and biochemical parameters indicated that total protein, aspartate aminotransferase, and alanine aminotransferase significantly differed between the polluted and reference C. striata (p < 0.05). The liver histopathological alterations revealed atypical cellular structures, such as vacuolar appearance, nucleus degeneration, rough endoplasmic reticulum disintegration, abnormal cytoplasmic mitochondria, and deposition of heavy metals. Heavy-metal contaminations from electronic waste dumping areas affect fish in terms of chromosomal aberration, serum biochemistry, and histopathology.

An improving method for extracting total carotenoids in an aquatic animal Chlamys nobilis

In the present study, an improving method for extracting carotenoids in aquatic animals using ultrasound-assisted extraction (UAE) was developed. The theoretical optimum extraction condition (ultrasonic power, temperature and time of 246.77 W, 37.64 °C and 29.03 min, respectively) based on the maximum extracted total carotenoids content (TCC) (141.13 µg/g) was predicted by single-factor experiments and response surface methodology. Additional experiments were then carried out under practical extraction conditions to verify the predicted value for TCC. The optimum practical extraction condition was at ultrasonic power, extraction temperature and extraction time of 240 W, 38 °C and 29 min, respectively, where the TCC (137.88 ± 1.22 µg/g) similar to the predicted value. On the other hand, a much lower total carotenoid of 107.75 ± 2.60 μg/g was obtained by the 2 h conventional extraction of carotenoids (CEC). The UAE in carotenoids extraction has higher efficiency, shorter processing time, and less acetone than the CEC.

Residues, bioaccumulations and biomagnification of perfluoroalkyl acids (PFAAs) in aquatic animals from Lake Chaohu, China

Residual levels of perfluoroalkyl acids (PFAAs) in seven species of aquatic animals were analyzed by liquid chromatography-mass spectrometry. The distribution, composition, bioaccumulation, and biomagnification of PFAAs and their effect factors were studied. The results showed that: 1) Wet weight concentrations of 17 PFAAs in the aquatic animals ranged from 1.77 to 38.65 ng/g, with a mean value of 12.71 ± 9.21 ng/g. PFOS was the predominant contaminant (4.57 ± 4.57 ng/g, 6.76%-46.25%), followed by PFDA (1.95 ± 1.37 ng/g, 11.68%-21.25%) and PFUdA (1.84 ± 1.21 ng/g, 9.73%-35.34%. 2) PFAA residual levels in Culter erythropterus (30.98 ± 6.65 ng/g) were the highest, followed by Hemibarbus maculatus (16.79 ± 1.88 ng/g), while the PFAA levels in Carassius auratus were the lowest (2.22 ± 0.60 ng/g). 3) Biota-water bioaccumulation factors (BAFs), biota-suspended solid accumulation factors (BSSAFs) and biota-sediment accumulation factors (BSAFs) ranged from 0.35 to 12,370.51, 7.77 to 8452.92 and 9.10 to 6984.61, respectively. Bioaccumulation by shrimp and snails was significantly affected by Kow. 4) Food web magnification factors were greater than 1, indicating that biomagnification of PFAAs occurs across trophic levels. The bioaccumulation and biomagnification of PFAAs were significantly correlated with carbon chain length.

INVESTIGATION INTO INDIVIDUAL HEALTH AND EXPOSURE TO INFECTIOUS AGENTS OF PLATYPUSES (ORNITHORHYNCHUS ANATINUS) IN TWO RIVER CATCHMENTS IN NORTHWEST TASMANIA

Changes in the health of individuals within wildlife populations can be a cause or effect of population declines in wildlife species. Aspects of individual platypus ( Ornithorhynchus anatinus ) health have been reported. However, holistic studies investigating potential synergistic effects of both pathogens and environmental factors are needed to expand understanding of platypus individual health. We collected baseline data on the health of platypuses in two Tasmanian river catchments (including evidence of the potentially fatal fungal disease mucormycosis) and on individual, demographic, and geographic patterns associated with health data results. We examined 130 wild platypuses from the Inglis River Catchment and 24 platypuses from the Seabrook Creek Catchment in northwest Tasmania between 29 August 2011 and 31 August 2013. More than 90% of captured platypuses were infected with ticks, Theileria spp., and trypanosomes. Evidence of exposure to other infections, including Salmonella spp., Leptospira spp., and intestinal parasites, was low (<10%). Three platypuses had single fungal granulomas in the webbing of a forefoot, but no evidence of mucormycosis was found in any of the study animals. Possible subclinical hepatopathies or cholangiohepatopathies were found in six platypuses. Exposure to infectious agents did not cluster geographically, demographically, or in individuals, and there was minimal evidence of morbidity resulting from infection. This study has provided important baseline data for monitoring the effects of threatening processes, including mucormycosis, on the health of infected populations.

Induced pluripotent stem cell technology and aquatic animal species

Aquatic animal species are the overall leaders in the scientific investigation of tough but important global health issues, including environmental toxicants and climate change. Historically, aquatic animal species also stand at the forefront of experimental biology, embryology and stem cell research. Over the past decade, intensive and high-powered investigations principally involving mouse and human cells have brought the generation and study of induced pluripotent stem cells (iPSCs) to a level that facilitates widespread use in a spectrum of species. A review of key features of these investigations is presented here as a primer for the use of iPSC technology to enhance ongoing aquatic animal species studies. iPSC and other cutting edge technologies create the potential to study individuals from "the wild" closer to the level of investigation applied to sophisticated inbred mouse models. A wide variety of surveys and hypothesis-driven investigations can be envisioned using this new capability, including comparisons of organism-specific development and exposure response and the testing of fundamental dogmas established using inbred mice. However, with these new capabilities, also come new criteria for rigorous baseline assessments and testing. Both the methods for inducing pluripotency and the source material can negatively impact iPSC quality and bourgeoning applications. Therefore, more rigorous strategies not required for inbred mouse models will have to be implemented to approach global health issues using individuals from "the wild" for aquatic animal species.

[Agonistic behaviors of aquatic animals]

Aggressive encounters between animals of the same species have been termed as "agonistic behaviors". Different to aggressions in predator-prey and other nonsocial interactions, agonistic behaviors widely exist in various aquatic animal individuals. To provide references for future research of agonistic behaviors and aquaculture, this article reviewed the expression forms, reasons, and mechanisms of agonistic behavior as well as its research status and development tendencies.