Organic carbon cycling and black shale deposition: an Earth System Science perspective

Earth has a prolonged history characterized by substantial cycling of matter and energy between multiple spheres. The production of organic carbon can be traced back to as early as ∼4.0 Ga, but the frequency and scale of organic-rich shales have varied markedly over geological time. In this paper, we discuss the organic carbon cycle and the development of black shale from the perspective of Earth System Science. We propose that black shale depositions are the results of interactions among lithospheric evolution, orbital forcing, weathering, photosynthesis and degradation. Black shales can record Earth's oxygenation process, provide petroleum and metallic mineral resources and reveal information about the driver, direction and magnitude of climate change. Future research on black shales should be expanded to encompass a more extensive and more multidimensional perspective.

How Particle Size Influences Oxidation of Ancient Organic Matter during Weathering of Black Shale

Weathering continuously converts rock to regolith at Earth's surface while regulating the atmospheric concentrations of CO2 and O2. Shale weathering is of particular interest because shale, the most abundant rock type exposed on continents, stores much of the ancient organic carbon (OCpetro) buried in rocks. Using geochemical and mineralogical analysis combined with neutron scattering and imaging, we investigated the weathering profile of OCpetro in saprock in a black shale (Marcellus Formation) in the Ridge and Valley Appalachians in Pennsylvania, U.S.A. Consistent with the low erosion rate of the landscape, we discovered that Marcellus is completely depleted in carbonate, plagioclase, and pyrite in saprock below the soil layer. On the contrary, only ∼60% of OCpetro was depleted in saprock. By comparing the pore structure of saprock to bedrock and samples combusted to remove organic matter (OM), we confirmed that the large particles of OM are preferentially depleted, leaving elongated pores of tens to hundreds of micrometers in length, while the smaller particulates of OM (ranging from ∼5 to ∼200 nm) are largely preserved during weathering. The retarded weathering of small OM particles is attributed to their close association with mineral surfaces in the shale matrix. The texture of OM in shale is underappreciated as an important factor that controls porosity generation and the weathering rate of OCpetro.

Adaptive specialization of a unique sponge body from the Cambrian Qingjiang biota

Sponge fossils from the Cambrian black shales have attracted attention from both palaeontologists and geochemists for many years in terms of their high diversity, beautiful preservation and perplexing adaptation to inhospitable living environments. However, the body shape of these sponges, which contributes to deciphering adaptive evolution, has not been scrutinized. New complete specimens of the hexactinellid sponge Sanshapentella tentoriformis sp. nov. from the Qingjiang biota (black shale of the Cambrian Stage 3 Shuijingtuo Formation, ca 518 Ma) allow recognition of a unique dendriform body characterized by a columnar trunk with multiple conical high peaks and distinctive quadripod-shaped dermal spicules that frame each high peak. The body shape of this new sponge along with other early Cambrian hexactinellids, is classified into three morpho-groups that reflect different levels of adaptivity to the environment. The cylindrical and ovoid bodies generally adapted to a large spectrum of environments; however, the dendriform body of S. tentoriformis was restricted to the relatively deep-water, oxygen-deficient environment. From a hindsight view, the unique body shape represents a consequence of adaptation that helps maintain an effective use of oxygen and a low energy cost in hypoxic conditions.

Uranium isotopic ratio of black shale and its role in detection of oxic-anoxic conditions of uranium depositions

The black shale is considered one of the most important rock units in the lower part of Um Bogma Formation, where it contains the uranium, heavy metals and rare earth elements mineralization. The black shale samples were analyzed radiochemically by using alpha spectrometry technique. Most of uranium in the studied samples is authigenic and the Th/U ratio confirms the deposition of uranium in reducing environment. The activity ratios of the studied black shale samples were characterized by ²³⁴U/²³⁸U > 1 and ²³⁰Th/²³⁴U < 1, which showed relatively recent precipitation of uranium from water in reducing conditions. ²³⁴U/²³⁵U and ²³⁸U/²³⁵U activity ratio was relatively deviated from equilibrium due to the changes in the oxidation-reduction conditions. The disequilibrium of ²²⁸Th/²³²Th can be due to the co-precipitation of ²²⁸Ra and the migration of ²²⁸Th from the black shale into the percolating water. So, the water was percolated through the paleochannels and caves instead of the rocks causing uranium mobilization and the fractionation of uranium, forming the oxidation-reduction interface in the periods from <6 × 10⁴ to >3 × 10⁵ year.

Lanthanide-Dependent Methanol Metabolism of a Proteobacteria-Dominated Community in a Light Lanthanide-Rich Deep Environment

This study investigated the occurrence and diversity of proteobacterial XoxF-type methanol dehydrogenases (MDHs) in the microbial community that inhabits a fossil organic matter- and sedimentary lanthanide (Ln³⁺)-rich underground mine environment using a metagenomic and metaproteomic approach. A total of 8 XoxF-encoding genes (XoxF-EGs) and 14 protein sequences matching XoxF were identified. XoxF-type MDHs were produced by Alpha-, Beta-, and Gammaproteobacteria represented by the four orders Methylococcales, Nitrosomonadales, Rhizobiales, and Xanthomonadales. The highest number of XoxF-EG- and XoxF-matching protein sequences were affiliated with Nitrosomonadales and Rhizobiales, respectively. Among the identified XoxF-EGs, two belonged to the XoxF1 clade, five to the XoxF4 clade, and one to the XoxF5 clade, while seven of the identified XoxF proteins belonged to the XoxF1 clade, four to the XoxF4 clade, and three to the XoxF5 clade. Moreover, the accumulation of light lanthanides and the presence of methanol in the microbial mat were confirmed. This study is the first to show the occurrence of XoxF in the metagenome and metaproteome of a deep microbial community colonizing a fossil organic matter- and light lanthanide-rich sedimentary environment. The presented results broaden our knowledge of the ecology of XoxF-producing bacteria as well as of the distribution and diversity of these enzymes in the natural environment.

Deterioration and Oxidation Characteristics of Black Shale under Immersion and Its Impact on the Strength of Concrete

Black shale, which usually contains pyrite, is easily oxidized and generates acid discharge. This acidic environment is not favorable for concrete in engineering applications and is likely to affect the durability of engineering structures. This study investigated the effect of acid discharge from the weathering of black shale on the strength of concrete under partially immersed conditions. Black shale concrete immersion tests were conducted at different immersion depths to evaluate the oxidation conduction of black shale. Water chemistry and oxidation products were monitored during and after the immersion tests. The quality and strength of the black shale and concrete specimens were obtained before and after the immersion by testing the ultrasonic wave velocity and uniaxial compressive strength. The results indicated that a lower immersion depth of black shale reveals a higher degree of oxidation, and the capillary zone in black shale is critical for black shale oxidation in terms of mass transfer. The ultrasonic velocity of the concrete showed different change patterns in the immersed and non-immersed zones. Precipitation and additional hydration enhanced the quality and entirety of the concrete (increased ultrasonic velocity) at the non-immersed or partially-immersed zones, while the dissolution of concrete was dominant in the immersed zone (decreased ultrasonic velocity) and induced a reduction of concrete quality. The compressive strength of the concrete was enhanced after immersion. The concrete strength slightly increased by 5-15%. This phenomenon is attributed to the filling of the voids by the precipitations of minerals, such as goethite and anhydrite.

[Accumulation of Heavy Metals in Agricultural Soils and Crops from an Area with a High Geochemical Background of Cadmium, Southwestern China]

In order to investigate the accumulation and transfer of heavy metals in agricultural soils and crops in an area with a high geochemical background of cadmium, soil and crop samples from a black shale outcropped area in Chongqing were collected and analyzed, and the results were then compared with those from other representative black shale outcropped areas. The results showed that some soil samples had a very low pH, and the metals Cd, Cr, Ni, and Zn were enriched. Cadmium concentrations in soil samples exceeded the safety limit, followed by Cr and Ni. Overall, 91.3% of soil samples were heavily to extremely polluted by Cd. The residual fractions accounted for more than 80% of the total metals, except for Cd and Pb. The weak acid soluble fraction of Cd accounted for 27.0%±6.4% of the total Cd, followed by Zn and Ni. The results demonstrate that weathering of black shales can result in elevated heavy metals in soils, and Cd is the primary contaminant in local soils. The high bioavailability of Cd and the high acidity of soils induced the enrichment of Cd in local crops. Cadmium has a higher transfer factor than other metals, and the crops were seriously polluted by Cd, particularly the leaf vegetables, which presented a high concentration of 11.5 mg·kg^-1 based on dry weight, and thus, these vegetables are not suitable for cultivating as food stuff. In addition, the risks from Cr should be of concern as well. Therefore, it is recommended that countermeasures be carried out to address the pollution situation, for example, by classifying the pollution levels of agricultural soils and adjusting the planting structures accordingly to reduce the health risks to local inhabitants.

The Oxidative Metabolism of Fossil Hydrocarbons and Sulfide Minerals by the Lithobiontic Microbial Community Inhabiting Deep Subterrestrial Kupferschiefer Black Shale

Black shales are one of the largest reservoirs of fossil organic carbon and inorganic reduced sulfur on Earth. It is assumed that microorganisms play an important role in the transformations of these sedimentary rocks and contribute to the return of organic carbon and inorganic sulfur to the global geochemical cycles. An outcrop of deep subterrestrial ~256-million-year-old Kupferschiefer black shale was studied to define the metabolic processes of the deep biosphere important in transformations of organic carbon and inorganic reduced sulfur compounds. This outcrop was created during mining activity 12 years ago and since then it has been exposed to the activity of oxygen and microorganisms. The microbial processes were described based on metagenome and metaproteome studies as well as on the geochemistry of the rock. The microorganisms inhabiting the subterrestrial black shale were dominated by bacterial genera such as Pseudomonas, Limnobacter, Yonghaparkia, Thiobacillus, Bradyrhizobium, and Sulfuricaulis. This study on black shale was the first to detect archaea and fungi, represented by Nitrososphaera and Aspergillus genera, respectively. The enzymatic oxidation of fossil aliphatic and aromatic hydrocarbons was mediated mostly by chemoorganotrophic bacteria, but also by archaea and fungi. The dissimilative enzymatic oxidation of primary reduced sulfur compounds was performed by chemolithotrophic bacteria. The geochemical consequences of microbial activity were the oxidation and dehydrogenation of kerogen, as well as oxidation of sulfide minerals.

The origin of Cretaceous black shales: a change in the surface ocean ecosystem and its triggers

Black shale is dark-colored, organic-rich sediment, and there have been many episodes of black shale deposition over the history of the Earth. Black shales are source rocks for petroleum and natural gas, and thus are both geologically and economically important. Here, we review our recent progress in understanding of the surface ocean ecosystem during periods of carbonaceous sediment deposition, and the factors triggering black shale deposition. The stable nitrogen isotopic composition of geoporphyrins (geological derivatives of chlorophylls) strongly suggests that N2-fixation was a major process for nourishing the photoautotrophs. A symbiotic association between diatoms and cyanobacteria may have been a major primary producer during episodes of black shale deposition. The timing of black shale formation in the Cretaceous is strongly correlated with the emplacement of large igneous provinces such as the Ontong Java Plateau, suggesting that black shale deposition was ultimately induced by massive volcanic events. However, the process that connects these events remains to be solved.