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Lorentzen SB, Arntzen MØ, Hahn T, Tuveng TR, Sørlie M, Zibek S, Vaaje-Kolstad G, Eijsink VGH. Genomic and Proteomic Study of Andreprevotia ripae Isolated from an Anthill Reveals an Extensive Repertoire of Chitinolytic Enzymes. J Proteome Res 2021; 20:4041-4052. [PMID: 34191517 PMCID: PMC8802321 DOI: 10.1021/acs.jproteome.1c00358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
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Chitin is an abundant natural polysaccharide
that is hard to degrade
because of its crystalline nature and because it is embedded in robust
co-polymeric materials containing other polysaccharides, proteins,
and minerals. Thus, it is of interest to study the enzymatic machineries
of specialized microbes found in chitin-rich environments. We describe
a genomic and proteomic analysis of Andreprevotia ripae, a chitinolytic Gram-negative bacterium isolated from an anthill.
The genome of A. ripae encodes four secreted
family GH19 chitinases of which two were detected and upregulated
during growth on chitin. In addition, the genome encodes as many as
25 secreted GH18 chitinases, of which 17 were detected and 12 were
upregulated during growth on chitin. Finally, the single lytic polysaccharide
monooxygenase (LPMO) was strongly upregulated during growth on chitin.
Whereas 66% of the 29 secreted chitinases contained two carbohydrate-binding
modules (CBMs), this fraction was 93% (13 out of 14) for the upregulated
chitinases, suggesting an important role for these CBMs. Next to an
unprecedented multiplicity of upregulated chitinases, this study reveals
several chitin-induced proteins that contain chitin-binding CBMs but
lack a known catalytic function. These proteins are interesting targets
for discovery of enzymes used by nature to convert chitin-rich biomass.
The MS proteomic data have been deposited in the PRIDE database with
accession number PXD025087.
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Affiliation(s)
- Silje B Lorentzen
- Faculty of Chemistry, Biotechnology, and Food Science, NMBU - Norwegian University of Life Sciences, N-1433 Ås, Norway
| | - Magnus Ø Arntzen
- Faculty of Chemistry, Biotechnology, and Food Science, NMBU - Norwegian University of Life Sciences, N-1433 Ås, Norway
| | - Thomas Hahn
- Fraunhofer Institute for Interfacial Engineering and Biotechnology IGB, Nobelstraße 12, 70569 Stuttgart, Germany
| | - Tina R Tuveng
- Faculty of Chemistry, Biotechnology, and Food Science, NMBU - Norwegian University of Life Sciences, N-1433 Ås, Norway
| | - Morten Sørlie
- Faculty of Chemistry, Biotechnology, and Food Science, NMBU - Norwegian University of Life Sciences, N-1433 Ås, Norway
| | - Susanne Zibek
- Fraunhofer Institute for Interfacial Engineering and Biotechnology IGB, Nobelstraße 12, 70569 Stuttgart, Germany
| | - Gustav Vaaje-Kolstad
- Faculty of Chemistry, Biotechnology, and Food Science, NMBU - Norwegian University of Life Sciences, N-1433 Ås, Norway
| | - Vincent G H Eijsink
- Faculty of Chemistry, Biotechnology, and Food Science, NMBU - Norwegian University of Life Sciences, N-1433 Ås, Norway
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