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Haberkorn C, David J, Henri H, Delpuech J, Lasseur R, Vavre F, Varaldi J. A major 6 Mb superlocus is involved in pyrethroid resistance in the common bed bug Cimex lectularius. Evol Appl 2023; 16:1012-1028. [PMID: 37216030 PMCID: PMC10197226 DOI: 10.1111/eva.13550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 03/23/2023] [Accepted: 04/04/2023] [Indexed: 05/24/2023] Open
Abstract
In the last few years, the bed bug Cimex lectularius has been an increasing problem worldwide, mainly due to the development of insecticide resistance to pyrethroids. The characterization of resistance alleles is a prerequisite to improve surveillance and resistance management. To identify genomic variants associated with pyrethroid resistance in Cimex lectularius, we compared the genetic composition of two recent and resistant populations with that of two ancient-susceptible strains using a genome-wide pool-seq design. We identified a large 6 Mb "superlocus" showing particularly high genetic differentiation and association with the resistance phenotype. This superlocus contained several clustered resistance genes and was also characterized by a high density of structural variants (inversions, duplications). The possibility that this superlocus constitutes a resistance "supergene" that evolved after the clustering of alleles adapted to insecticide and after reduction in recombination is discussed.
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Affiliation(s)
- Chloé Haberkorn
- CNRS, VetAgro Sup, UMR 5558, Laboratoire de Biométrie et Biologie ÉvolutiveUniversité de Lyon, Université Lyon 1VilleurbanneFrance
- IZInovationLyonFrance
| | - Jean‐Philippe David
- Laboratoire d'Écologie AlpineUMR UGA‐USMB‐CNRS 5553 Université Grenoble Alpes CS 40700Grenoble cedex 9France
| | - Hélène Henri
- CNRS, VetAgro Sup, UMR 5558, Laboratoire de Biométrie et Biologie ÉvolutiveUniversité de Lyon, Université Lyon 1VilleurbanneFrance
| | - Jean‐Marie Delpuech
- CNRS, VetAgro Sup, UMR 5558, Laboratoire de Biométrie et Biologie ÉvolutiveUniversité de Lyon, Université Lyon 1VilleurbanneFrance
| | | | - Fabrice Vavre
- CNRS, VetAgro Sup, UMR 5558, Laboratoire de Biométrie et Biologie ÉvolutiveUniversité de Lyon, Université Lyon 1VilleurbanneFrance
| | - Julien Varaldi
- CNRS, VetAgro Sup, UMR 5558, Laboratoire de Biométrie et Biologie ÉvolutiveUniversité de Lyon, Université Lyon 1VilleurbanneFrance
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Benhamou S, Rahioui I, Henri H, Charles H, Da Silva P, Heddi A, Vavre F, Desouhant E, Calevro F, Mouton L. Cytotype Affects the Capability of the Whitefly Bemisia tabaci MED Species To Feed and Oviposit on an Unfavorable Host Plant. mBio 2021; 12:e0073021. [PMID: 34781749 PMCID: PMC8593682 DOI: 10.1128/mbio.00730-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 10/04/2021] [Indexed: 11/22/2022] Open
Abstract
The acquisition of nutritional obligate primary endosymbionts (P-symbionts) allowed phloemo-phageous insects to feed on plant sap and thus colonize novel ecological niches. P-symbionts often coexist with facultative secondary endosymbionts (S-symbionts), which may also influence their hosts' niche utilization ability. The whitefly Bemisia tabaci is a highly diversified species complex harboring, in addition to the P-symbiont "Candidatus Portiera aleyrodidarum," seven S-symbionts whose roles remain poorly understood. Here, we compare the phenotypic and metabolic responses of three B. tabaci lines differing in their S-symbiont community, reared on three different host plants, hibiscus, tobacco, or lantana, and address whether and how S-symbionts influence insect capacity to feed and produce offspring on those plants. We first show that hibiscus, tobacco, and lantana differ in their free amino acid composition. Insects' performance, as well as free amino acid profile and symbiotic load, were shown to be plant dependent, suggesting a critical role for the plant nutritional properties. Insect fecundity was significantly lower on lantana, indicating that it is the least favorable plant. Remarkably, insects reared on this plant show a specific amino acid profile and a higher symbiont density compared to the two other plants. In addition, this plant was the only one for which fecundity differences were observed between lines. Using genetically homogeneous hybrids, we demonstrate that cytotype (mitochondria and symbionts), and not genotype, is a major determinant of females' fecundity and amino acid profile on lantana. As cytotypes differ in their S-symbiont community, we propose that these symbionts may mediate their hosts' suitable plant range. IMPORTANCE Microbial symbionts are universal in eukaryotes, and it is now recognized that symbiotic associations represent major evolutionary driving forces. However, the extent to which symbionts contribute to their hosts' ecological adaptation and subsequent diversification is far from being fully elucidated. The whitefly Bemisia tabaci is a sap feeder associated with multiple coinfecting intracellular facultative symbionts. Here, we show that plant species simultaneously affect whiteflies' performance, amino acid profile, and symbiotic density, which could be partially explained by differences in plant nutritional properties. We also demonstrate that, on lantana, the least favorable plant used in our study, whiteflies' performance is determined by their cytotype. We propose that the host plant utilization in B. tabaci is influenced by its facultative symbiont community composition, possibly through its impact on the host dietary requirements. Altogether, our data provide new insights into the impact of intracellular microorganisms on their animal hosts' ecological niche range and diversification.
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Affiliation(s)
- Sylvain Benhamou
- Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, UMR 5558, Villeurbanne, France
- Univ Lyon, INRAE, INSA Lyon, BF2I, UMR 203, Villeurbanne, France
| | - Isabelle Rahioui
- Univ Lyon, INRAE, INSA Lyon, BF2I, UMR 203, Villeurbanne, France
| | - Hélène Henri
- Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, UMR 5558, Villeurbanne, France
| | - Hubert Charles
- Univ Lyon, INRAE, INSA Lyon, BF2I, UMR 203, Villeurbanne, France
| | - Pedro Da Silva
- Univ Lyon, INRAE, INSA Lyon, BF2I, UMR 203, Villeurbanne, France
| | - Abdelaziz Heddi
- Univ Lyon, INRAE, INSA Lyon, BF2I, UMR 203, Villeurbanne, France
| | - Fabrice Vavre
- Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, UMR 5558, Villeurbanne, France
| | - Emmanuel Desouhant
- Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, UMR 5558, Villeurbanne, France
| | - Federica Calevro
- Univ Lyon, INRAE, INSA Lyon, BF2I, UMR 203, Villeurbanne, France
| | - Laurence Mouton
- Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, UMR 5558, Villeurbanne, France
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Zélé F, Santos I, Matos M, Weill M, Vavre F, Magalhães S. Endosymbiont diversity in natural populations of Tetranychus mites is rapidly lost under laboratory conditions. Heredity (Edinb) 2020; 124:603-617. [PMID: 32047292 PMCID: PMC7080723 DOI: 10.1038/s41437-020-0297-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Revised: 01/24/2020] [Accepted: 01/24/2020] [Indexed: 01/30/2023] Open
Abstract
Although the diversity of bacterial endosymbionts in arthropods is well documented, whether and how such diversity is maintained remains an open question. We investigated the temporal changes occurring in the prevalence and composition of endosymbionts after transferring natural populations of Tetranychus spider mites from the field to the laboratory. These populations, belonging to three different Tetranychus species (T. urticae, T. ludeni and T. evansi) carried variable infection frequencies of Wolbachia, Cardinium, and Rickettsia. We report a rapid change of the infection status of these populations after only 6 months of laboratory rearing, with an apparent loss of Rickettsia and Cardinium, while Wolbachia apparently either reached fixation or was lost. We show that Wolbachia had variable effects on host longevity and fecundity, and induced variable levels of cytoplasmic incompatibility (CI) in each fully infected population, despite no sequence divergence in the markers used and full CI rescue between all populations. This suggests that such effects are largely dependent upon the host genotype. Subsequently, we used these data to parameterize a theoretical model for the invasion of CI-inducing symbionts in haplodiploids, which shows that symbiont effects are sufficient to explain their dynamics in the laboratory. This further suggests that symbiont diversity and prevalence in the field are likely maintained by environmental heterogeneity, which is reduced in the laboratory. Overall, this study highlights the lability of endosymbiont infections and draws attention to the limitations of laboratory studies to understand host-symbiont interactions in natural populations.
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Affiliation(s)
- Flore Zélé
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências, Universidade de Lisboa, Edificio C2, Piso-3 Campo Grande, 1749016, Lisbon, Portugal.
| | - Inês Santos
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências, Universidade de Lisboa, Edificio C2, Piso-3 Campo Grande, 1749016, Lisbon, Portugal
| | - Margarida Matos
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências, Universidade de Lisboa, Edificio C2, Piso-3 Campo Grande, 1749016, Lisbon, Portugal
| | - Mylène Weill
- Institut des Sciences de l'Evolution (CNRS-Université de Montpellier-IRD-EPHE), 34095, CEDEX 5, Montpellier, France
| | - Fabrice Vavre
- CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, Université Lyon 1, Université de Lyon, F-69622, Villeurbanne, France
| | - Sara Magalhães
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências, Universidade de Lisboa, Edificio C2, Piso-3 Campo Grande, 1749016, Lisbon, Portugal
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Thomas F, Vavre F, Tissot T, Vittecoq M, Giraudeau M, Bernex F, Misse D, Renaud F, Raven N, Beckmann C, Hamede R, Biro PA, Ujvari B. Cancer Is Not (Only) a Senescence Problem. Trends Cancer 2018; 4:169-172. [PMID: 29506667 DOI: 10.1016/j.trecan.2018.01.002] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2017] [Revised: 01/03/2018] [Accepted: 01/09/2018] [Indexed: 01/28/2023]
Abstract
Age is one of the strongest predictors of cancer and risk of death from cancer. Cancer is therefore generally viewed as a senescence-related malady. However, cancer also exists at subclinical levels in humans and other animals, but its earlier effects on the body are poorly known by comparison. We argue here that cancer is a significant but ignored burden on the body and is likely to be a strong selective force from early during the lifetime of an organism. It is time to adopt this novel view of malignant pathologies to improve our understanding of the ways in which oncogenic phenomena influence the ecology and evolution of animals long before their negative impacts become evident and fatal.
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Affiliation(s)
- Frédéric Thomas
- CREEC/MIVEGEC, UMR IRD/CNRS/UM 5290, 911 Avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France.
| | - Fabrice Vavre
- Univ Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR5558, F-69622 Villeurbanne, France
| | - Tazzio Tissot
- CREEC/MIVEGEC, UMR IRD/CNRS/UM 5290, 911 Avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France; Institute of Ecology and Environmental Sciences - Paris, Sorbonne Université-CNRS-IRD-INRA-P7-UPEC, 4 place Jussieu, 75005 Paris, France
| | - Marion Vittecoq
- Centre de Recherche de la Tour du Valat, le Sambuc, 13200 Arles, France
| | - Mathieu Giraudeau
- Arizona State University, School of Life Sciences, Tempe, AZ 85287-4501, USA; Centre for Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Penryn, UK
| | - Florence Bernex
- RHEM, IRCM, Institute of Cancer Research Montpellier, INSERM, Montpellier, France; ICM Regional Cancer Institute of Montpellier, Montpellier, France
| | - Dorothée Misse
- CREEC/MIVEGEC, UMR IRD/CNRS/UM 5290, 911 Avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France
| | - François Renaud
- CREEC/MIVEGEC, UMR IRD/CNRS/UM 5290, 911 Avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France
| | - Nynke Raven
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC 3216, Australia
| | - Christa Beckmann
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC 3216, Australia; Centre for Behavioural and Physiological Ecology, Zoology, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
| | - Rodrigo Hamede
- RHEM, IRCM, Institute of Cancer Research Montpellier, INSERM, Montpellier, France; Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC 3216, Australia
| | - Peter A Biro
- RHEM, IRCM, Institute of Cancer Research Montpellier, INSERM, Montpellier, France
| | - Beata Ujvari
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC 3216, Australia; School of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, TAS 7001, Australia
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Duron O, Doublet P, Vavre F, Bouchon D. The Importance of Revisiting Legionellales Diversity. Trends Parasitol 2018; 34:1027-1037. [PMID: 30322750 DOI: 10.1016/j.pt.2018.09.008] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 09/19/2018] [Accepted: 09/24/2018] [Indexed: 12/15/2022]
Abstract
Bacteria of the order Legionellales, such as Legionella pneumophila, the agent of Legionnaires' disease, and Coxiella burnetii, the agent of Q fever, are widely recognized as human pathogens. While our view of the Legionellales is often limited to clinical isolates, ecological surveys are continually uncovering new members of the Legionellales that do not fall into the recognized pathogenic species. Here we emphasize that most of these Legionellales are nonpathogenic forms that have evolved symbiotic lifestyles with nonvertebrate hosts. The diversity of nonpathogenic forms remains, however, largely underexplored. We conjecture that its characterization, once contrasted with the data on pathogenic species, will reveal novel highlights on the mechanisms underlying lifestyle transitions of intracellular bacteria, including the emergence of pathogenesis and mutualism, transmission routes, and host specificity.
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Affiliation(s)
- Olivier Duron
- Laboratoire Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle (MIVEGEC), Centre National de la Recherche Scientifique (CNRS) - Institut pour la Recherche et le Développement (IRD) - Université de Montpellier (UM), 911 Avenue Agropolis, F-34394 Montpellier, France.
| | - Patricia Doublet
- CIRI, Centre International de Recherche en Infectiologie, INSERM, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, École Normale Supérieure de Lyon, Université Lyon, F-69100 Villeurbanne, France
| | - Fabrice Vavre
- Univ Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR5558, 43 Boulevard du 11 novembre 1918, F-69622 Villeurbanne, France
| | - Didier Bouchon
- Université de Poitiers, Laboratoire Ecologie et Biologie des Interactions - UMR CNRS 7267, F-86073 Poitiers, France
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7
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Romba R, Gnankine O, Drabo SF, Tiendrebeogo F, Henri H, Mouton L, Vavre F. Abundance of Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae) and its parasitoids on vegetables and cassava plants in Burkina Faso (West Africa). Ecol Evol 2018; 8:6091-6103. [PMID: 29988460 PMCID: PMC6024141 DOI: 10.1002/ece3.4078] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Revised: 03/09/2018] [Accepted: 03/24/2018] [Indexed: 02/02/2023] Open
Abstract
The whitefly Bemisia tabaci is a pest of many agricultural and ornamental crops worldwide and particularly in Africa. It is a complex of cryptic species, which is extremely polyphagous with hundreds of host plants identified around the world. Previous surveys in western Africa indicated the presence of two biotypes of the invasive MED species (MED-Q1 and MED-Q3) living in sympatry with the African species SSA and ASL. This situation constitutes one of the rare cases of local coexistence of various genetic entities within the B. tabaci complex. In order to study the dynamics of the distribution and abundance of genetic entities within this community and to identify potential factors that could contribute to coexistence, we sampled B. tabaci populations in Burkina Faso in 2015 and 2016 on various plants, and also their parasitoids. All four genetic entities were still recorded, indicating no exclusion of local species by the MED species. While B. tabaci individuals were found on 55 plant species belonging to eighteen (18) families showing the high polyphagy of this pest, some species/biotypes exhibited higher specificity. Two parasitoid species (Eretmocerus mundus and Encarsia vandrieschei) were also recorded with E. mundus being predominant in most localities and on most plants. Our data indicated that whitefly abundance, diversity, and rate of parasitism varied according to areas, plants, and years, but that parasitism rate was globally highly correlated with whitefly abundance suggesting density dependence. Our results also suggest dynamic variation in the local diversity of B. tabaci species/biotypes from 1 year to the other, specifically with MED-Q1 and ASL species. This work provides relevant information on the nature of plant-B. tabaci-parasitoid interactions in West Africa and identifies that coexistence might be stabilized by niche differentiation for some genetic entities. However, MED-Q1 and ASL show extensive niche overlap, which could ultimately lead to competitive exclusion.
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Affiliation(s)
- Rahim Romba
- Laboratoire d'Entomologie Fondamentale et Appliquée, Unité de Formation et de Recherche en Sciences de la Vie et de la Terre (UFR‐SVT)Université Ouaga I Pr Joseph Ki ZerboOuagadougouBurkina Faso
| | - Olivier Gnankine
- Laboratoire d'Entomologie Fondamentale et Appliquée, Unité de Formation et de Recherche en Sciences de la Vie et de la Terre (UFR‐SVT)Université Ouaga I Pr Joseph Ki ZerboOuagadougouBurkina Faso
| | - Samuel Fogné Drabo
- Laboratoire d'Entomologie Fondamentale et Appliquée, Unité de Formation et de Recherche en Sciences de la Vie et de la Terre (UFR‐SVT)Université Ouaga I Pr Joseph Ki ZerboOuagadougouBurkina Faso
| | | | - Hélène Henri
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie EvolutiveUMR5558VilleurbanneFrance
| | - Laurence Mouton
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie EvolutiveUMR5558VilleurbanneFrance
| | - Fabrice Vavre
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie EvolutiveUMR5558VilleurbanneFrance
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Cattel J, Nikolouli K, Andrieux T, Martinez J, Jiggins F, Charlat S, Vavre F, Lejon D, Gibert P, Mouton L. Back and forth Wolbachia
transfers reveal efficient strains to control spotted wing drosophila populations. J Appl Ecol 2018. [DOI: 10.1111/1365-2664.13101] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Julien Cattel
- Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558; Univ Lyon; Université Claude Bernard, CNRS; Villeurbanne France
| | - Katerina Nikolouli
- Department of Forest and Soil Sciences; Boku; University of Natural Resources and Life Sciences; Vienna Austria
- Insect Pest Control Section; Joint FAO/IAEA Division of Nuclear, Techniques in Food and Agriculture; Vienna Austria
| | - Thibault Andrieux
- Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558; Univ Lyon; Université Claude Bernard, CNRS; Villeurbanne France
| | - Julien Martinez
- Department of Genetics; University of Cambridge; Cambridge UK
| | - Francis Jiggins
- Department of Genetics; University of Cambridge; Cambridge UK
| | - Sylvain Charlat
- Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558; Univ Lyon; Université Claude Bernard, CNRS; Villeurbanne France
| | - Fabrice Vavre
- Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558; Univ Lyon; Université Claude Bernard, CNRS; Villeurbanne France
| | - David Lejon
- Rovaltain Research Company, RRCo; Valence Cedex France
| | - Patricia Gibert
- Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558; Univ Lyon; Université Claude Bernard, CNRS; Villeurbanne France
| | - Laurence Mouton
- Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558; Univ Lyon; Université Claude Bernard, CNRS; Villeurbanne France
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Monnin D, Kremer N, Desouhant E, Vavre F. Impact of Wolbachia on oxidative stress sensitivity in the parasitic wasp Asobara japonica. PLoS One 2017; 12:e0175974. [PMID: 28426794 PMCID: PMC5398613 DOI: 10.1371/journal.pone.0175974] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 04/03/2017] [Indexed: 02/05/2023] Open
Abstract
The oxidative homeostasis is the balance between reactive oxygen species and antioxidant molecules. In addition to be considered as a key factor underlying life-history traits evolution, the oxidative homeostasis has been shown to be involved in many host–symbiont associations. Previous studies suggest an interaction between the bacterial endosymbiont Wolbachia and the oxidative homeostasis of some insect hosts. This interaction is likely to exert a strong influence on the host evolution, as it has been proposed in the wasp Asobara tabida, whose dependence upon Wolbachia is due to the evolutionary loss of its ability to regulate the oxidative homeostasis in the absence of the symbiont. Although such cases of complete dependence are rare, cases of insects having lost only a part of their autonomy over the control of the oxidative homeostasis might be more common. If so, one can expect that insects having coevolved with Wolbachia will be more sensitive to oxidative stress when cured of their symbionts. We tested this hypothesis by studying the effects of an experimentally-induced oxidative stress on various life-history traits of Asobara japonica, a species closely related to A. tabida. For most of the life-history traits studied, the sensitivity of the wasps to oxidative stress did not correlate with their infection status. The only exception was the parasitic success. However, contrarily to our expectation, the sensitivity to oxidative stress was increased, rather than decreased, when Wolbachia was present. This result suggests that Wolbachia does not participate to mitigate oxidative stress in A. japonica, and that on the contrary its presence might still be costly in stressful environments.
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Affiliation(s)
- David Monnin
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
- * E-mail:
| | - Natacha Kremer
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
| | - Emmanuel Desouhant
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
| | - Fabrice Vavre
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
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Duron O, Binetruy F, Noël V, Cremaschi J, McCoy KD, Arnathau C, Plantard O, Goolsby J, Pérez de León AA, Heylen DJA, Van Oosten AR, Gottlieb Y, Baneth G, Guglielmone AA, Estrada‐Peña A, Opara MN, Zenner L, Vavre F, Chevillon C. Evolutionary changes in symbiont community structure in ticks. Mol Ecol 2017; 26:2905-2921. [DOI: 10.1111/mec.14094] [Citation(s) in RCA: 135] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Revised: 02/07/2017] [Accepted: 02/13/2017] [Indexed: 12/31/2022]
Affiliation(s)
- Olivier Duron
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
| | - Florian Binetruy
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
| | - Valérie Noël
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
| | - Julie Cremaschi
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
| | - Karen D. McCoy
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
| | - Céline Arnathau
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
| | | | - John Goolsby
- Cattle Fever Tick Research Laboratory USDA‐ARS Edinburg TX USA
| | - Adalberto A. Pérez de León
- Knipling‐Bushland U.S. Livestock Insects Research Laboratory Veterinary Pest Genomics Center Kerrville TX USA
| | - Dieter J. A. Heylen
- Evolutionary Ecology Group University of Antwerp Universiteitsplein 1 Antwerp Belgium
| | - A. Raoul Van Oosten
- Evolutionary Ecology Group University of Antwerp Universiteitsplein 1 Antwerp Belgium
| | - Yuval Gottlieb
- Koret School of Veterinary Medicine The Hebrew University of Jerusalem Rehovot Israel
| | - Gad Baneth
- Koret School of Veterinary Medicine The Hebrew University of Jerusalem Rehovot Israel
| | - Alberto A. Guglielmone
- Instituto Nacional de Tecnología Agropecuaria Estación Experimental Agropecuaria Rafaela and Consejo Nacional de Investigaciones Científicas y Técnicas Santa Fe Argentina
| | - Agustin Estrada‐Peña
- Department of Animal Pathology Faculty of Veterinary Medicine University of Zaragoza Zaragoza Spain
| | - Maxwell N. Opara
- Ticks and Tick‐borne Pathogens Research Unit (TTbPRU) Department of Veterinary Parasitology and Entomology University of Abuja Abuja Nigeria
| | - Lionel Zenner
- Laboratoire de Biométrie et Biologie Évolutive (LBBE) Centre National de la Recherche Scientifique (UMR5558) – Université Claude Bernard Lyon 1 Villeurbanne France
| | - Fabrice Vavre
- Laboratoire de Biométrie et Biologie Évolutive (LBBE) Centre National de la Recherche Scientifique (UMR5558) – Université Claude Bernard Lyon 1 Villeurbanne France
| | - Christine Chevillon
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle) Centre National de la Recherche Scientifique (UMR5290) – Institut pour la Recherche et le Développement (UR224) – Université de Montpellier Montpellier France
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11
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Lopez-Maestre H, Brinza L, Marchet C, Kielbassa J, Bastien S, Boutigny M, Monnin D, Filali AE, Carareto CM, Vieira C, Picard F, Kremer N, Vavre F, Sagot MF, Lacroix V. SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence. Nucleic Acids Res 2016; 44:e148. [PMID: 27458203 PMCID: PMC5100560 DOI: 10.1093/nar/gkw655] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Accepted: 07/11/2016] [Indexed: 11/14/2022] Open
Abstract
SNPs (Single Nucleotide Polymorphisms) are genetic markers whose precise identification is a prerequisite for association studies. Methods to identify them are currently well developed for model species, but rely on the availability of a (good) reference genome, and therefore cannot be applied to non-model species. They are also mostly tailored for whole genome (re-)sequencing experiments, whereas in many cases, transcriptome sequencing can be used as a cheaper alternative which already enables to identify SNPs located in transcribed regions. In this paper, we propose a method that identifies, quantifies and annotates SNPs without any reference genome, using RNA-seq data only. Individuals can be pooled prior to sequencing, if not enough material is available from one individual. Using pooled human RNA-seq data, we clarify the precision and recall of our method and discuss them with respect to other methods which use a reference genome or an assembled transcriptome. We then validate experimentally the predictions of our method using RNA-seq data from two non-model species. The method can be used for any species to annotate SNPs and predict their impact on the protein sequence. We further enable to test for the association of the identified SNPs with a phenotype of interest.
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Affiliation(s)
- Hélène Lopez-Maestre
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France.,EPI ERABLE - Inria Grenoble, Rhône-Alpes
| | - Lilia Brinza
- PT Génomique et Transcriptomique, BIOASTER, Lyon, France
| | - Camille Marchet
- Université de Rennes, F-35000 Rennes; équipe GenScale, IRISA, Rennes
| | - Janice Kielbassa
- Synergie-Lyon-Cancer, Universite Lyon 1, Centre Leon Berard, Lyon, France
| | - Sylvère Bastien
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France.,EPI ERABLE - Inria Grenoble, Rhône-Alpes
| | - Mathilde Boutigny
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France.,EPI ERABLE - Inria Grenoble, Rhône-Alpes
| | - David Monnin
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France
| | - Adil El Filali
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France
| | - Claudia Marcia Carareto
- Department of Biology, UNESP - São Paulo State University, São José do Rio Preto, São Paulo, Brazil
| | - Cristina Vieira
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France.,EPI ERABLE - Inria Grenoble, Rhône-Alpes
| | - Franck Picard
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France
| | - Natacha Kremer
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France
| | - Fabrice Vavre
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France.,EPI ERABLE - Inria Grenoble, Rhône-Alpes
| | - Marie-France Sagot
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France.,EPI ERABLE - Inria Grenoble, Rhône-Alpes
| | - Vincent Lacroix
- Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France .,EPI ERABLE - Inria Grenoble, Rhône-Alpes
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12
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Monnin D, Kremer N, Berny C, Henri H, Dumet A, Voituron Y, Desouhant E, Vavre F. Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila-Wolbachia symbioses. J Evol Biol 2016; 29:1211-22. [PMID: 26999590 DOI: 10.1111/jeb.12863] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Revised: 03/25/2016] [Accepted: 03/08/2016] [Indexed: 02/03/2023]
Abstract
The evolution of symbioses along the continuum between parasitism and mutualism can be influenced by the oxidative homeostasis, that is the balance between reactive oxygen species (ROS) and antioxidant molecules. Indeed, ROS can contribute to the host immune defence to regulate symbiont populations, but are also toxic. This interplay between ROS and symbiosis is notably exemplified by recent results in arthropod-Wolbachia interactions. Wolbachia are symbiotic bacteria involved in a wide range of interactions with their arthropods hosts, from facultative, parasitic associations to obligatory, mutualistic ones. In this study, we used Drosophila-Wolbachia associations to determine whether the oxidative homeostasis plays a role in explaining the differences between phenotypically distinct arthropod-Wolbachia symbioses. We used Drosophila lines with different Wolbachia infections and measured the effects of pro-oxidant (paraquat) and antioxidant (glutathione) treatments on the Wolbachia density and the host survival. We show that experimental manipulations of the oxidative homeostasis can reduce the cost of the infection through its effect on Wolbachia density. We discuss the implication of this result from an evolutionary perspective and argue that the oxidative homeostasis could underlie the evolution of tolerance and dependence on Wolbachia.
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Affiliation(s)
- D Monnin
- Laboratoire de Biométrie et Biologie Evolutive, Univ Lyon, Université Claude Bernard, CNRS, UMR 5558, F-69622 Villeurbanne, France
| | - N Kremer
- Laboratoire de Biométrie et Biologie Evolutive, Univ Lyon, Université Claude Bernard, CNRS, UMR 5558, F-69622 Villeurbanne, France
| | - C Berny
- Laboratoire de Biométrie et Biologie Evolutive, Univ Lyon, Université Claude Bernard, CNRS, UMR 5558, F-69622 Villeurbanne, France
| | - H Henri
- Laboratoire de Biométrie et Biologie Evolutive, Univ Lyon, Université Claude Bernard, CNRS, UMR 5558, F-69622 Villeurbanne, France
| | - A Dumet
- Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés, Univ Lyon, Université Claude Bernard, CNRS, UMR 5023, F-69622 Villeurbanne, France
| | - Y Voituron
- Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés, Univ Lyon, Université Claude Bernard, CNRS, UMR 5023, F-69622 Villeurbanne, France
| | - E Desouhant
- Laboratoire de Biométrie et Biologie Evolutive, Univ Lyon, Université Claude Bernard, CNRS, UMR 5558, F-69622 Villeurbanne, France
| | - F Vavre
- Laboratoire de Biométrie et Biologie Evolutive, Univ Lyon, Université Claude Bernard, CNRS, UMR 5558, F-69622 Villeurbanne, France
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13
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Hellard E, Fouchet D, Vavre F, Pontier D. Parasite-Parasite Interactions in the Wild: How To Detect Them? Trends Parasitol 2015; 31:640-652. [PMID: 26440785 DOI: 10.1016/j.pt.2015.07.005] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Revised: 07/06/2015] [Accepted: 07/31/2015] [Indexed: 01/26/2023]
Abstract
Inter-specific interactions between parasites impact on parasite intra-host dynamics, host health, and disease management. Identifying and understanding interaction mechanisms in the wild is crucial for wildlife disease management. It is however complex because several scales are interlaced. Parasite-parasite interactions are likely to occur via mechanisms at the within-host level, but also at upper levels (host population and community). Furthermore, interactions occurring at one level of organization spread to upper levels through cascade effects. Even if cascade effects are important confounding factors, we argue that we can also benefit from them because upper scales often provide a way to survey a wider range of parasites at lower cost. New protocols and theoretical studies (especially across scales) are necessary to take advantage of this opportunity.
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Affiliation(s)
- Eléonore Hellard
- Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, Université Lyon I, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche 5558, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France; Percy FitzPatrick Institute, DST-NRF Centre of Excellence, University of Cape Town, Private Bag X3, Rondebosch 7701, South Africa.
| | - David Fouchet
- Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, Université Lyon I, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche 5558, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France; LabEx Ecofect, Ecoevolutionary Dynamics of Infectious Diseases, University of Lyon, France
| | - Fabrice Vavre
- Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, Université Lyon I, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche 5558, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France; LabEx Ecofect, Ecoevolutionary Dynamics of Infectious Diseases, University of Lyon, France
| | - Dominique Pontier
- Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, Université Lyon I, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche 5558, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France; LabEx Ecofect, Ecoevolutionary Dynamics of Infectious Diseases, University of Lyon, France
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14
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Duron O, Noël V, McCoy KD, Bonazzi M, Sidi-Boumedine K, Morel O, Vavre F, Zenner L, Jourdain E, Durand P, Arnathau C, Renaud F, Trape JF, Biguezoton AS, Cremaschi J, Dietrich M, Léger E, Appelgren A, Dupraz M, Gómez-Díaz E, Diatta G, Dayo GK, Adakal H, Zoungrana S, Vial L, Chevillon C. The Recent Evolution of a Maternally-Inherited Endosymbiont of Ticks Led to the Emergence of the Q Fever Pathogen, Coxiella burnetii. PLoS Pathog 2015; 11:e1004892. [PMID: 25978383 PMCID: PMC4433120 DOI: 10.1371/journal.ppat.1004892] [Citation(s) in RCA: 183] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Accepted: 04/17/2015] [Indexed: 12/16/2022] Open
Abstract
Q fever is a highly infectious disease with a worldwide distribution. Its causative agent, the intracellular bacterium Coxiella burnetii, infects a variety of vertebrate species, including humans. Its evolutionary origin remains almost entirely unknown and uncertainty persists regarding the identity and lifestyle of its ancestors. A few tick species were recently found to harbor maternally-inherited Coxiella-like organisms engaged in symbiotic interactions, but their relationships to the Q fever pathogen remain unclear. Here, we extensively sampled ticks, identifying new and atypical Coxiella strains from 40 of 58 examined species, and used this data to infer the evolutionary processes leading to the emergence of C. burnetii. Phylogenetic analyses of multi-locus typing and whole-genome sequencing data revealed that Coxiella-like organisms represent an ancient and monophyletic group allied to ticks. Remarkably, all known C. burnetii strains originate within this group and are the descendants of a Coxiella-like progenitor hosted by ticks. Using both colony-reared and field-collected gravid females, we further establish the presence of highly efficient maternal transmission of these Coxiella-like organisms in four examined tick species, a pattern coherent with an endosymbiotic lifestyle. Our laboratory culture assays also showed that these Coxiella-like organisms were not amenable to culture in the vertebrate cell environment, suggesting different metabolic requirements compared to C. burnetii. Altogether, this corpus of data demonstrates that C. burnetii recently evolved from an inherited symbiont of ticks which succeeded in infecting vertebrate cells, likely by the acquisition of novel virulence factors. How virulent infectious diseases emerge from non-pathogenic organisms is a challenging question. Here, we address this evolutionary issue in the case of Q fever. Its causative agent, the intracellular bacterium Coxiella burnetii, is extremely infectious to humans and a variety of animals. However, uncertainty persists regarding its evolutionary origin, including the identity and lifestyle of its ancestors. In this article, we show that C. burnetii arose from a rare evolutionary transformation of a maternally-inherited endosymbiont of ticks into a specialized and virulent pathogen of vertebrates. While arthropod symbionts are typically transmitted maternally and thought not to be infectious to vertebrates, we establish here that one Coxiella symbiont has evolved the necessary adaptations to exploit the vertebrate cell, leading to the emergence of Q fever.
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Affiliation(s)
- Olivier Duron
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
- * E-mail:
| | - Valérie Noël
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Karen D. McCoy
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Matteo Bonazzi
- Centre d’études d’agents Pathogènes et Biotechnologies pour la Santé (CPBS), Centre National de la Recherche Scientifique (UMR5236)—Université de Montpellier, Montpellier, France
| | - Karim Sidi-Boumedine
- National Reference Laboratory on Q Fever, French Agency for Food, Environmental and Occupational Health Safety (ANSES), Sophia-Antipolis, France
| | - Olivier Morel
- Laboratoire de Biométrie et Biologie Évolutive (LBBE), Centre National de la Recherche Scientifique (UMR5558)—Université Claude Bernard Lyon 1, Villeurbanne, France
| | - Fabrice Vavre
- Laboratoire de Biométrie et Biologie Évolutive (LBBE), Centre National de la Recherche Scientifique (UMR5558)—Université Claude Bernard Lyon 1, Villeurbanne, France
| | - Lionel Zenner
- Laboratoire de Biométrie et Biologie Évolutive (LBBE), Centre National de la Recherche Scientifique (UMR5558)—Université Claude Bernard Lyon 1, Villeurbanne, France
| | - Elsa Jourdain
- Unité d'Epidémiologie Animale, Institut National de le Recherche Agronomique (UR346), Saint Genès Champanelle, France
| | - Patrick Durand
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Céline Arnathau
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - François Renaud
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Jean-François Trape
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Abel S. Biguezoton
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
- Unité de Recherche sur les Bases Biologiques de la lutte intégrée (URBIO), Centre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso
| | - Julie Cremaschi
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Muriel Dietrich
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Elsa Léger
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Anaïs Appelgren
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Marlène Dupraz
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
| | - Elena Gómez-Díaz
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
- Biology Department, O. Wayne Rollins Research Center, Emory University, Atlanta, Georgia, United States of America
| | - Georges Diatta
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Centre National de la Recherche Scientifique (UMR6236)—Aix Marseille Université, Dakar, Sénégal
| | - Guiguigbaza-Kossigan Dayo
- Unité de Recherche sur les Bases Biologiques de la lutte intégrée (URBIO), Centre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso
| | - Hassane Adakal
- Unité de Recherche sur les Bases Biologiques de la lutte intégrée (URBIO), Centre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso
- Département des Sciences et Techniques de l’Elevage (DSTE/FASE), Université Dan Dicko Dan Koulodo, Maradi, Niger
| | - Sébastien Zoungrana
- Unité de Recherche sur les Bases Biologiques de la lutte intégrée (URBIO), Centre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso
| | - Laurence Vial
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), Prades-le-Lez, France
| | - Christine Chevillon
- Laboratoire MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), Centre National de la Recherche Scientifique (UMR5290)—Université de Montpellier—Institut pour la Recherche et le Développement (UR 224), Montpellier, France
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15
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Rao Q, Rollat-Farnier PA, Zhu DT, Santos-Garcia D, Silva FJ, Moya A, Latorre A, Klein CC, Vavre F, Sagot MF, Liu SS, Mouton L, Wang XW. Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci. BMC Genomics 2015; 16:226. [PMID: 25887812 PMCID: PMC4438442 DOI: 10.1186/s12864-015-1379-6] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2014] [Accepted: 02/21/2015] [Indexed: 02/07/2023] Open
Abstract
BACKGROUND The whitefly Bemisia tabaci is an important agricultural pest with global distribution. This phloem-sap feeder harbors a primary symbiont, "Candidatus Portiera aleyrodidarum", which compensates for the deficient nutritional composition of its food sources, and a variety of secondary symbionts. Interestingly, all of these secondary symbionts are found in co-localization with the primary symbiont within the same bacteriocytes, which should favor the evolution of strong interactions between symbionts. RESULTS In this paper, we analyzed the genome sequences of the primary symbiont Portiera and of the secondary symbiont Hamiltonella in the B. tabaci Mediterranean (MED) species in order to gain insight into the metabolic role of each symbiont in the biology of their host. The genome sequences of the uncultured symbionts Portiera and Hamiltonella were obtained from one single bacteriocyte of MED B. tabaci. As already reported, the genome of Portiera is highly reduced (357 kb), but has kept a number of genes encoding most essential amino-acids and carotenoids. On the other hand, Portiera lacks almost all the genes involved in the synthesis of vitamins and cofactors. Moreover, some pathways are incomplete, notably those involved in the synthesis of some essential amino-acids. Interestingly, the genome of Hamiltonella revealed that this secondary symbiont can not only provide vitamins and cofactors, but also complete the missing steps of some of the pathways of Portiera. In addition, some critical amino-acid biosynthetic genes are missing in the two symbiotic genomes, but analysis of whitefly transcriptome suggests that the missing steps may be performed by the whitefly itself or its microbiota. CONCLUSIONS These data suggest that Portiera and Hamiltonella are not only complementary but could also be mutually dependent to provide a full complement of nutrients to their host. Altogether, these results illustrate how functional redundancies can lead to gene losses in the genomes of the different symbiotic partners, reinforcing their inter-dependency.
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Affiliation(s)
- Qiong Rao
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China.
- School of Agriculture and Food Science, Zhejiang A & F University, 311300, Lin'an, Zhejiang, China.
| | - Pierre-Antoine Rollat-Farnier
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France.
- Inria Grenoble Rhône-Alpes, Grenoble, France.
| | - Dan-Tong Zhu
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China.
| | - Diego Santos-Garcia
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain.
| | - Francisco J Silva
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain.
- Unidad Mixta de Investigación en Genómica y Salud FISABIO-Salud Pública and Universitat de València, Valencia, Spain.
| | - Andrés Moya
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain.
- Unidad Mixta de Investigación en Genómica y Salud FISABIO-Salud Pública and Universitat de València, Valencia, Spain.
| | - Amparo Latorre
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain.
- Unidad Mixta de Investigación en Genómica y Salud FISABIO-Salud Pública and Universitat de València, Valencia, Spain.
| | - Cecilia C Klein
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France.
- Inria Grenoble Rhône-Alpes, Grenoble, France.
| | - Fabrice Vavre
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France.
| | - Marie-France Sagot
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France.
- Inria Grenoble Rhône-Alpes, Grenoble, France.
| | - Shu-Sheng Liu
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China.
| | - Laurence Mouton
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France.
| | - Xiao-Wei Wang
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China.
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Mouton L, Gnankiné O, Henri H, Terraz G, Ketoh G, Martin T, Fleury F, Vavre F. Detection of genetically isolated entities within the Mediterranean species of Bemisia tabaci: new insights into the systematics of this worldwide pest. Pest Manag Sci 2015; 71:452-458. [PMID: 24863547 DOI: 10.1002/ps.3834] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Revised: 05/07/2014] [Accepted: 05/20/2014] [Indexed: 06/03/2023]
Abstract
BACKGROUND The taxonomy of the species complex Bemisia tabaci, a serious agricultural pest worldwide, is not well resolved yet, even though species delimitation is critical for designing effective control strategies. Based on a threshold of 3.5% mitochondrial (mtCOI) sequence divergence, recent studies have identified 28 putative species. Among them, mitochondrial variability associated with particular symbiotic compositions (=cytotypes) can be observed, as in MED, which raises the question of whether it is a single or a complex of biological species. RESULTS Using microsatellites, an investigation was made of the genetic relatedness of Q1 and ASL cytotypes that belong to MED. Samples of the two cytotypes were collected in West Africa where they live in sympatry on the same hosts. Genotyping revealed a high level of differentiation, without evidence of gene flow. Moreover, they differed highly in frequencies of resistance alleles to insecticides, which were much higher in Q1 than in ASL. CONCLUSION Q1 and ASL are sufficiently reproductively isolated for the introgression of neutral alleles to be prevented, suggesting that they are actually different species. This indicates that nuclear genetic differentiation must be investigated within groups with less than 3.5% mtCOI divergence in order to elucidate the taxonomy of B. tabaci at a finer level. Overall, these data provide important information for pest management.
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Affiliation(s)
- Laurence Mouton
- Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, Villeurbanne, France
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17
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Rollat-Farnier PA, Santos-Garcia D, Rao Q, Sagot MF, Silva FJ, Henri H, Zchori-Fein E, Latorre A, Moya A, Barbe V, Liu SS, Wang XW, Vavre F, Mouton L. Two host clades, two bacterial arsenals: evolution through gene losses in facultative endosymbionts. Genome Biol Evol 2015; 7:839-55. [PMID: 25714744 PMCID: PMC5322557 DOI: 10.1093/gbe/evv030] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Bacterial endosymbiosis is an important evolutionary process in insects, which can harbor both obligate and facultative symbionts. The evolution of these symbionts is driven by evolutionary convergence, and they exhibit among the tiniest genomes in prokaryotes. The large host spectrum of facultative symbionts and the high diversity of strategies they use to infect new hosts probably impact the evolution of their genome and explain why they undergo less severe genomic erosion than obligate symbionts. Candidatus Hamiltonella defensa is suitable for the investigation of the genomic evolution of facultative symbionts because the bacteria are engaged in specific relationships in two clades of insects. In aphids, H. defensa is found in several species with an intermediate prevalence and confers protection against parasitoids. In whiteflies, H. defensa is almost fixed in some species of Bemisia tabaci, which suggests an important role of and a transition toward obligate symbiosis. In this study, comparisons of the genome of H. defensa present in two B. tabaci species (Middle East Asia Minor 1 and Mediterranean) and in the aphid Acyrthosiphon pisum revealed that they belong to two distinct clades and underwent specific gene losses. In aphids, it contains highly virulent factors that could allow protection and horizontal transfers. In whiteflies, the genome lost these factors and seems to have a limited ability to acquire genes. However it contains genes that could be involved in the production of essential nutrients, which is consistent with a primordial role for this symbiont. In conclusion, although both lineages of H. defensa have mutualistic interactions with their hosts, their genomes follow distinct evolutionary trajectories that reflect their phenotype and could have important consequences on their evolvability.
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Affiliation(s)
- Pierre-Antoine Rollat-Farnier
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université de Lyon, Université Lyon1, Villeurbanne, France BAMBOO Research Team, INRIA Grenoble, Rhône-Alpes, France
| | - Diego Santos-Garcia
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain
| | - Qiong Rao
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China School of Agriculture and Food Science, Zhejiang Agriculture and Forestry University, Lin'an, Hangzhou, China
| | - Marie-France Sagot
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université de Lyon, Université Lyon1, Villeurbanne, France BAMBOO Research Team, INRIA Grenoble, Rhône-Alpes, France
| | - Francisco J Silva
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain Unidad Mixta de Investigación en Genómica y Salud de la Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad Valenciana (FISABIO-Salud Pública) y el Instituto Cavanilles de Biodiversitad y Biología Evolutiva (Universitat de València), Valencia, Spain
| | - Hélène Henri
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université de Lyon, Université Lyon1, Villeurbanne, France
| | - Einat Zchori-Fein
- Department of Entomology, NeweYa'ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
| | - Amparo Latorre
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain Unidad Mixta de Investigación en Genómica y Salud de la Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad Valenciana (FISABIO-Salud Pública) y el Instituto Cavanilles de Biodiversitad y Biología Evolutiva (Universitat de València), Valencia, Spain
| | - Andrés Moya
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain Unidad Mixta de Investigación en Genómica y Salud de la Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad Valenciana (FISABIO-Salud Pública) y el Instituto Cavanilles de Biodiversitad y Biología Evolutiva (Universitat de València), Valencia, Spain
| | - Valérie Barbe
- CEA/DSV/IG/Genoscope, 2 rue Gaston Cremieux, Evry, France
| | - Shu-Sheng Liu
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Xiao-Wei Wang
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Fabrice Vavre
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université de Lyon, Université Lyon1, Villeurbanne, France BAMBOO Research Team, INRIA Grenoble, Rhône-Alpes, France
| | - Laurence Mouton
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université de Lyon, Université Lyon1, Villeurbanne, France
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18
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Dumas P, Legeai F, Lemaitre C, Scaon E, Orsucci M, Labadie K, Gimenez S, Clamens AL, Henri H, Vavre F, Aury JM, Fournier P, Kergoat GJ, d'Alençon E. Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species? Genetica 2015; 143:305-16. [PMID: 25694156 PMCID: PMC4419160 DOI: 10.1007/s10709-015-9829-2] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Accepted: 02/09/2015] [Indexed: 12/11/2022]
Abstract
The moth Spodoptera frugiperda is a well-known pest of crops throughout the Americas, which consists of two strains adapted to different host-plants: the first feeds preferentially on corn, cotton and sorghum whereas the second is more associated with rice and several pasture grasses. Though morphologically indistinguishable, they exhibit differences in their mating behavior, pheromone compositions, and show development variability according to the host-plant. Though the latter suggest that both strains are different species, this issue is still highly controversial because hybrids naturally occur in the wild, not to mention the discrepancies among published results concerning mating success between the two strains. In order to clarify the status of the two host-plant strains of S. frugiperda, we analyze features that possibly reflect the level of post-zygotic isolation: (1) first generation (F1) hybrid lethality and sterility; (2) patterns of meiotic segregation of hybrids in reciprocal second generation (F2), as compared to the meiosis of the two parental strains. We found a significant reduction of mating success in F1 in one direction of the cross and a high level of microsatellite markers showing transmission ratio distortion in the F2 progeny. Our results support the existence of post-zygotic reproductive isolation between the two laboratory strains and are in accordance with the marked level of genetic differentiation that was recovered between individuals of the two strains collected from the field. Altogether these results provide additional evidence in favor of a sibling species status for the two strains.
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Affiliation(s)
- Pascaline Dumas
- UM - UMR 1333 DGIMI, Université Montpellier, Place Eugène Bataillon, 34095, Montpellier, France,
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19
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Vavre F, Kremer N. Microbial impacts on insect evolutionary diversification: from patterns to mechanisms. Curr Opin Insect Sci 2014; 4:29-34. [PMID: 28043405 DOI: 10.1016/j.cois.2014.08.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Revised: 08/04/2014] [Accepted: 08/05/2014] [Indexed: 06/06/2023]
Abstract
Symbiosis can favor rapid shifts in host phenotypic traits, particularly through the contribution of symbionts to the host's physiology. In addition, variations in the microbiota composition between individuals can be associated with pre-zygotic and post-zygotic barriers. All together, these phenomena may contribute to insect diversification and speciation. Recent advances have also shown that the host-microbiota molecular dialog, mediated notably by host immune and developmental pathways, is critical for the acquisition and control of the microbiota, and could also contribute to reproductive isolation. While still a controversial hypothesis, adaptation through symbiosis could thus trigger host-symbiont coevolution and accelerate differentiation.
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Affiliation(s)
- Fabrice Vavre
- Université de Lyon, F-69000, Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France.
| | - Natacha Kremer
- Université de Lyon, F-69000, Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France
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20
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Badawi M, Giraud I, Vavre F, Grève P, Cordaux R. Signs of neutralization in a redundant gene involved in homologous recombination in Wolbachia endosymbionts. Genome Biol Evol 2014; 6:2654-64. [PMID: 25230723 PMCID: PMC4224334 DOI: 10.1093/gbe/evu207] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Genomic reduction in bacterial endosymbionts occurs through large genomic deletions and long-term accumulation of mutations. The latter process involves successive steps including gene neutralization, pseudogenization, and gradual erosion until complete loss. Although many examples of pseudogenes at various levels of degradation have been reported, neutralization cases are scarce because of the transient nature of the process. Gene neutralization may occur due to relaxation of selection in nonessential genes, for example, those involved in redundant functions. Here, we report an example of gene neutralization in the homologous recombination (HR) pathway of Wolbachia, a bacterial endosymbiont of arthropods and nematodes. The HR pathway is often depleted in endosymbiont genomes, but it is apparently intact in some Wolbachia strains. Analysis of 12 major HR genes showed that they have been globally under strong purifying selection during the evolution of Wolbachia strains hosted by arthropods, supporting the evolutionary importance of the HR pathway for these Wolbachia genomes. However, we detected signs of recent neutralization of the ruvA gene in a subset of Wolbachia strains, which might be related to an ancestral, clade-specific amino acid change that impaired DNA-binding activity. Strikingly, RuvA is part of the RuvAB complex involved in branch migration, whose function overlaps with the RecG helicase. Although ruvA is experiencing neutralization, recG is under strong purifying selection. Thus, our high phylogenetic resolution suggests that we identified a rare example of targeted neutralization of a gene involved in a redundant function in an endosymbiont genome.
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Affiliation(s)
- Myriam Badawi
- Université de Poitiers, UMR CNRS 7267 Ecologie et Biologie des Interactions, Equipe Ecologie Evolution Symbiose, Poitiers, France
| | - Isabelle Giraud
- Université de Poitiers, UMR CNRS 7267 Ecologie et Biologie des Interactions, Equipe Ecologie Evolution Symbiose, Poitiers, France
| | - Fabrice Vavre
- Université de Lyon, UMR CNRS 5558 Biométrie et Biologie Evolutive, Villeurbanne, France
| | - Pierre Grève
- Université de Poitiers, UMR CNRS 7267 Ecologie et Biologie des Interactions, Equipe Ecologie Evolution Symbiose, Poitiers, France
| | - Richard Cordaux
- Université de Poitiers, UMR CNRS 7267 Ecologie et Biologie des Interactions, Equipe Ecologie Evolution Symbiose, Poitiers, France
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21
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Boivin T, Henri H, Vavre F, Gidoin C, Veber P, Candau JN, Magnoux E, Roques A, Auger-Rozenberg MA. Epidemiology of asexuality induced by the endosymbiotic Wolbachia across phytophagous wasp species: host plant specialization matters. Mol Ecol 2014; 23:2362-75. [PMID: 24673824 DOI: 10.1111/mec.12737] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2013] [Revised: 03/21/2014] [Accepted: 03/24/2014] [Indexed: 02/02/2023]
Abstract
Among eukaryotes, sexual reproduction is by far the most predominant mode of reproduction. However, some systems maintaining sexuality appear particularly labile and raise intriguing questions on the evolutionary routes to asexuality. Thelytokous parthenogenesis is a form of spontaneous loss of sexuality leading to strong distortion of sex ratio towards females and resulting from mutation, hybridization or infection by bacterial endosymbionts. We investigated whether ecological specialization is a likely mechanism of spread of thelytoky within insect communities. Focusing on the highly specialized genus Megastigmus (Hymenoptera: Torymidae), we first performed a large literature survey to examine the distribution of thelytoky in these wasps across their respective obligate host plant families. Second, we tested for thelytoky caused by endosymbionts by screening in 15 arrhenotokous and 10 thelytokous species for Wolbachia, Cardinium, Arsenophonus and Rickettsia endosymbionts and by performing antibiotic treatments. Finally, we performed phylogenetic reconstructions using multilocus sequence typing (MLST) to examine the evolution of endosymbiont-mediated thelytoky in Megastigmus and its possible connections to host plant specialization. We demonstrate that thelytoky evolved from ancestral arrhenotoky through the horizontal transmission and the fixation of the parthenogenesis-inducing Wolbachia. We find that ecological specialization in Wolbachia's hosts was probably a critical driving force for Wolbachia infection and spread of thelytoky, but also a constraint. Our work further reinforces the hypothesis that community structure of insects is a major driver of the epidemiology of endosymbionts and that competitive interactions among closely related species may facilitate their horizontal transmission.
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Affiliation(s)
- T Boivin
- UR629 Ecologie des Forêts Méditerranéennes, INRA, URFM, F-84914, Avignon, France
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22
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Santos-Garcia D, Rollat-Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci. Genome Biol Evol 2014; 6:1013-30. [PMID: 24723729 PMCID: PMC4007549 DOI: 10.1093/gbe/evu077] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Many insects harbor inherited bacterial endosymbionts. Although some of them are not strictly essential and are considered facultative, they can be a key to host survival under specific environmental conditions, such as parasitoid attacks, climate changes, or insecticide pressures. The whitefly Bemisia tabaci is at the top of the list of organisms inflicting agricultural damage and outbreaks, and changes in its distribution may be associated to global warming. In this work, we have sequenced and analyzed the genome of Cardinium cBtQ1, a facultative bacterial endosymbiont of B. tabaci and propose that it belongs to a new taxonomic family, which also includes Candidatus Amoebophilus asiaticus and Cardinium cEper1, endosymbionts of amoeba and wasps, respectively. Reconstruction of their last common ancestors' gene contents revealed an initial massive gene loss from the free-living ancestor. This was followed in Cardinium by smaller losses, associated with settlement in arthropods. Some of these losses, affecting cofactor and amino acid biosynthetic encoding genes, took place in Cardinium cBtQ1 after its divergence from the Cardinium cEper1 lineage and were related to its settlement in the whitefly and its endosymbionts. Furthermore, the Cardinium cBtQ1 genome displays a large proportion of transposable elements, which have recently inactivated genes and produced chromosomal rearrangements. The genome also contains a chromosomal duplication and a multicopy plasmid, which harbors several genes putatively associated with gliding motility, as well as two other genes encoding proteins with potential insecticidal activity. As gene amplification is very rare in endosymbionts, an important function of these genes cannot be ruled out.
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Affiliation(s)
- Diego Santos-Garcia
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain
| | - Pierre-Antoine Rollat-Farnier
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Villeurbanne, France
- BAMBOO Research team, INRIA Grenoble, Rhône-Alpes, France
| | - Francisco Beitia
- Instituto Valenciano de Investigaciones Agrarias, Unidad Asociada de Entomología IVIA/CIB-CSIC, Valencia, Spain
| | - Einat Zchori-Fein
- Department of Entomology, Newe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
| | - Fabrice Vavre
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Villeurbanne, France
- BAMBOO Research team, INRIA Grenoble, Rhône-Alpes, France
| | - Laurence Mouton
- Université de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Villeurbanne, France
| | - Andrés Moya
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain
- Unidad Mixta de Investigación en Genómica y Salud (FISABIO-Salud Pública and Universitat de València), Valencia, Spain
| | - Amparo Latorre
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain
- Unidad Mixta de Investigación en Genómica y Salud (FISABIO-Salud Pública and Universitat de València), Valencia, Spain
- *Corresponding author: E-mail: ;
| | - Francisco J. Silva
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Spain
- Unidad Mixta de Investigación en Genómica y Salud (FISABIO-Salud Pública and Universitat de València), Valencia, Spain
- *Corresponding author: E-mail: ;
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Abstract
Arthropods exhibit a large variety of sex determination systems both at the chromosomal and molecular level. Male heterogamety, female heterogamety, and haplodiploidy occur frequently, but partially different genes are involved. Endosymbionts, such as Wolbachia, Cardinium,Rickettsia, and Spiroplasma, can manipulate host reproduction and sex determination. Four major reproductive manipulation types are distinguished: cytoplasmic incompatibility, thelytokous parthenogenesis, male killing, and feminization. In this review, the effects of these manipulation types and how they interfere with arthropod sex determination in terms of host developmental timing, alteration of sex determination, and modification of sexual differentiation pathways are summarized. Transitions between different manipulation types occur frequently which suggests that they are based on similar molecular processes. It is also discussed how mechanisms of reproductive manipulation and host sex determination can be informative on each other, with a special focus on haplodiploidy. Future directions on how the study of endosymbiotic manipulation of host reproduction can be key to further studies of arthropod sex determination are shown.
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Affiliation(s)
- W-J Ma
- Evolutionary Genetics, Centre for Ecological and Evolutionary Studies, University of Groningen, Groningen, The Netherlands
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Merville A, Venner S, Henri H, Vallier A, Menu F, Vavre F, Heddi A, Bel-Venner MC. Endosymbiont diversity among sibling weevil species competing for the same resource. BMC Evol Biol 2013; 13:28. [PMID: 23379718 PMCID: PMC3623666 DOI: 10.1186/1471-2148-13-28] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2012] [Accepted: 01/30/2013] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Whereas the impact of endosymbionts on the ecology of their hosts is well known in some insect species, the question of whether host communities are influenced by endosymbionts remains largely unanswered. Notably, the coexistence of host species competing with each other, which is expected to be stabilized by their ecological differences, could be facilitated by differences in their endosymbionts. Yet, the composition of endosymbiotic communities housed by natural communities of competing host species is still almost unknown. In this study, we started filling this gap by describing and comparing the bacterial endosymbiotic communities of four sibling weevil species (Curculio spp.) that compete with each other to lay eggs into oak acorns (Quercus spp.) and exhibit marked ecological differences. RESULTS All four species housed the primary endosymbiont Candidatus Curculioniphilus buchneri, yet each of these had a clearly distinct community of secondary endosymbionts, including Rickettsia, Spiroplasma, and two Wolbachia strains. Notably, three weevil species harbored their own predominant facultative endosymbiont and possessed the remaining symbionts at a residual infection level. CONCLUSIONS The four competing species clearly harbor distinct endosymbiotic communities. We discuss how such endosymbiotic communities could spread and keep distinct in the four insect species, and how these symbionts might affect the organization and species richness of host communities.
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Affiliation(s)
- Adrien Merville
- Université de Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France.
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25
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Santos-Garcia D, Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. Complete genome sequence of "Candidatus Portiera aleyrodidarum" BT-QVLC, an obligate symbiont that supplies amino acids and carotenoids to Bemisia tabaci. J Bacteriol 2012; 194:6654-5. [PMID: 23144402 PMCID: PMC3497482 DOI: 10.1128/jb.01793-12] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
The genome of "Candidatus Portiera aleyrodidarum," the primary endosymbiont of the whitefly Bemisia tabaci (Mediterranean species), is reported. It presents a reduced genome (357 kb) encoding the capability to synthetize, or participate in the synthesis of, several amino acids and carotenoids, being the first insect endosymbiont capable of supplying carotenoids.
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Affiliation(s)
- Diego Santos-Garcia
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain
| | - Pierre-Antoine Farnier
- Université Claude Bernard Lyon 1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Villeurbanne, France
| | - Francisco Beitia
- Instituto Valenciano de Investigaciones Agrarias, Unidad Asociada de Entomología IVIA/CIB-CSIC, Valencia, Spain
| | - Einat Zchori-Fein
- Agricultural Research Organization, Department of Entomology, Newe Ya'ar Research Center, Ramat Yishay, Israel
| | - Fabrice Vavre
- Université Claude Bernard Lyon 1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Villeurbanne, France
| | - Laurence Mouton
- Université Claude Bernard Lyon 1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Villeurbanne, France
| | - Andrés Moya
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain
- Unidad Mixta de Investigación en Genómica y Salud (Centro Superior de Investigación en Salud Pública [CSISP]), Valencia, Spain
| | - Amparo Latorre
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain
- Unidad Mixta de Investigación en Genómica y Salud (Centro Superior de Investigación en Salud Pública [CSISP]), Valencia, Spain
| | - Francisco J. Silva
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain
- Unidad Mixta de Investigación en Genómica y Salud (Centro Superior de Investigación en Salud Pública [CSISP]), Valencia, Spain
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Vavre F, Charlat S. Making (good) use of Wolbachia: what the models say. Curr Opin Microbiol 2012; 15:263-8. [DOI: 10.1016/j.mib.2012.03.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2012] [Accepted: 03/15/2012] [Indexed: 01/22/2023]
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Martinez J, Duplouy A, Woolfit M, Vavre F, O'Neill SL, Varaldi J. Influence of the virus LbFV and of Wolbachia in a host-parasitoid interaction. PLoS One 2012; 7:e35081. [PMID: 22558118 PMCID: PMC3338833 DOI: 10.1371/journal.pone.0035081] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2011] [Accepted: 03/08/2012] [Indexed: 01/12/2023] Open
Abstract
Symbionts are widespread and might have a substantial effect on the outcome of interactions between species, such as in host-parasitoid systems. Here, we studied the effects of symbionts on the outcome of host-parasitoid interactions in a four-partner system, consisting of the parasitoid wasp Leptopilina boulardi, its two hosts Drosophila melanogaster and D. simulans, the wasp virus LbFV, and the endosymbiotic bacterium Wolbachia. The virus is known to manipulate the superparasitism behavior of the parasitoid whereas some Wolbachia strains can reproductively manipulate and/or confer pathogen protection to Drosophila hosts. We used two nuclear backgrounds for both Drosophila species, infected with or cured of their respective Wolbachia strains, and offered them to L. boulardi of one nuclear background, either infected or uninfected by the virus. The main defence mechanism against parasitoids, i.e. encapsulation, and other important traits of the interaction were measured. The results showed that virus-infected parasitoids are less frequently encapsulated than uninfected ones. Further experiments showed that this viral effect involved both a direct protective effect against encapsulation and an indirect effect of superparasitism. Additionally, the Wolbachia strain wAu affected the encapsulation ability of its Drosophila host but the direction of this effect was strongly dependent on the presence/absence of LbFV. Our results confirmed the importance of heritable symbionts in the outcome of antagonistic interactions.
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Affiliation(s)
- Julien Martinez
- CNRS UMR5558 Laboratoire de Biométrie et Biologie Evolutive, Université Lyon 1, Villeurbanne, France
- * E-mail: (JM); (AD)
| | - Anne Duplouy
- Department of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland
- * E-mail: (JM); (AD)
| | - Megan Woolfit
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
| | - Fabrice Vavre
- CNRS UMR5558 Laboratoire de Biométrie et Biologie Evolutive, Université Lyon 1, Villeurbanne, France
| | - Scott L. O'Neill
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
| | - Julien Varaldi
- CNRS UMR5558 Laboratoire de Biométrie et Biologie Evolutive, Université Lyon 1, Villeurbanne, France
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Kremer N, Charif D, Henri H, Gavory F, Wincker P, Mavingui P, Vavre F. Influence of Wolbachia on host gene expression in an obligatory symbiosis. BMC Microbiol 2012; 12 Suppl 1:S7. [PMID: 22376153 PMCID: PMC3287518 DOI: 10.1186/1471-2180-12-s1-s7] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
BACKGROUND Wolbachia are intracellular bacteria known to be facultative reproductive parasites of numerous arthropod hosts. Apart from these reproductive manipulations, recent findings indicate that Wolbachia may also modify the host's physiology, notably its immune function. In the parasitoid wasp, Asobara tabida, Wolbachia is necessary for oogenesis completion, and aposymbiotic females are unable to produce viable offspring. The absence of egg production is also associated with an increase in programmed cell death in the ovaries of aposymbiotic females, suggesting that a mechanism that ensures the maintenance of Wolbachia in the wasp could also be responsible for this dependence. In order to decipher the general mechanisms underlying host-Wolbachia interactions and the origin of the dependence, we developed transcriptomic approaches to compare gene expression in symbiotic and aposymbiotic individuals. RESULTS As no genetic data were available on A. tabida, we constructed several Expressed Sequence Tags (EST) libraries, and obtained 12,551 unigenes from this species. Gene expression was compared between symbiotic and aposymbiotic ovaries through in silico analysis and in vitro subtraction (SSH). As pleiotropic functions involved in immunity and development could play a major role in the establishment of dependence, the expression of genes involved in oogenesis, programmed cell death (PCD) and immunity (broad sense) was analyzed by quantitative RT-PCR. We showed that Wolbachia might interfere with these numerous biological processes, in particular some related to oxidative stress regulation. We also showed that Wolbachia may interact with immune gene expression to ensure its persistence within the host. CONCLUSIONS This study allowed us to constitute the first major dataset of the transcriptome of A. tabida, a species that is a model system for both host/Wolbachia and host/parasitoid interactions. More specifically, our results highlighted that symbiont infection may interfere with numerous pivotal processes at the individual level, suggesting that the impact of Wolbachia should also be investigated beyond reproductive manipulations.
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Abstract
Arthropods and nematodes are important protagonists in human health because either they act as vectors of pathogens (bacteria, protozoa, viruses or fungus), or are themselves parasites. Fighting infectious diseases is based essentially on vaccination (prevention) or chemotherapeutic (curative) approaches in human, but one can envisage as an alternative to reduce the number of vectors or limit their ability to spread pathogens. Such strategies controlling dissemination will undoubtedly benefit from the knowledge accumulated by recent works on powerful mechanisms developed by symbiotic insect bacteria such as Wolbachia to popagate in arthropods and nematods. This review summarizes these recent data, and indicate how these mechanisms can be manipulated to reduce the dissemination of insect vectors propagating human diseases.
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Affiliation(s)
- Fabrice Vavre
- Université Lyon 1, Laboratoire de biométrie et biologie évolutive, Villeurbanne, France.
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Abstract
Bacterial symbionts are widespread in insects and other animals. Most of them are predominantly vertically transmitted, along with their hosts' genes, and thus extend the heritable genetic variation present in one species. These passengers have a variety of repercussions on the host's phenotypes: besides the cost imposed on the host for maintaining the symbiont population, they can provide fitness advantages to the host or manipulate the host's reproduction. We argue that insect symbioses are ideal model systems for community genetics. First, bacterial symbionts directly or indirectly affect the interactions with other species within a community. Examples include their involvement in modifying the use of host plants by phytophagous insects, in providing resistance to natural enemies, but also in reducing the global genetic diversity or gene flow between populations within some species. Second, one emerging picture in insect symbioses is that many species are simultaneously infected with more than one symbiont, which permits studying the factors that shape bacterial communities; for example, horizontal transmission, interactions between host genotype, symbiont genotype and the environment and interactions among symbionts. One conclusion is that insects' symbiotic complements are dynamic communities that affect and are affected by the communities in which they are embedded.
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Affiliation(s)
- Julia Ferrari
- Department of Biology, University of York, PO Box 373, York YO10 5YW, UK.
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Kraaijeveld K, Reumer BM, Mouton L, Kremer N, Vavre F, van Alphen JJM. Does a parthenogenesis-inducing Wolbachia induce vestigial cytoplasmic incompatibility? Naturwissenschaften 2011; 98:175-80. [PMID: 21221516 PMCID: PMC3040317 DOI: 10.1007/s00114-010-0756-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Revised: 12/06/2010] [Accepted: 12/09/2010] [Indexed: 11/25/2022]
Abstract
Wolbachia is a maternally inherited bacterium that manipulates the reproduction of its host. Recent studies have shown that male-killing strains can induce cytoplasmic incompatibility (CI) when introgressed into a resistant host. Phylogenetic studies suggest that transitions between CI and other Wolbachia phenotypes have also occurred frequently, raising the possibility that latent CI may be widespread among Wolbachia. Here, we investigate whether a parthenogenesis-inducing Wolbachia strain can also induce CI. Parthenogenetic females of the parasitoid wasp Asobara japonica regularly produce a small number of males that may be either infected or not. Uninfected males were further obtained through removal of the Wolbachia using antibiotics and from a naturally uninfected strain. Uninfected females that had mated with infected males produced a slightly, but significantly more male-biased sex ratio than uninfected females that had mated with uninfected males. This effect was strongest in females that mated with males that had a relatively high Wolbachia titer. Quantitative PCR indicated that infected males did not show higher ratios of nuclear versus mitochondrial DNA content. Wolbachia therefore does not cause diploidization of cells in infected males. While these results are consistent with CI, other alternatives such as production of abnormal sperm by infected males cannot be completely ruled out. Overall, the effect was very small (9%), suggesting that if CI is involved it may have degenerated through the accumulation of mutations.
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Affiliation(s)
- Ken Kraaijeveld
- Institute of Biology, Leiden University, P.O. Box 9505, 2300 RA, Leiden, The Netherlands.
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Gottlieb Y, Zchori-Fein E, Mozes-Daube N, Kontsedalov S, Skaljac M, Brumin M, Sobol I, Czosnek H, Vavre F, Fleury F, Ghanim M. The transmission efficiency of tomato yellow leaf curl virus by the whitefly Bemisia tabaci is correlated with the presence of a specific symbiotic bacterium species. J Virol 2010; 84:9310-7. [PMID: 20631135 PMCID: PMC2937599 DOI: 10.1128/jvi.00423-10] [Citation(s) in RCA: 239] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2010] [Accepted: 07/06/2010] [Indexed: 11/20/2022] Open
Abstract
Tomato yellow leaf curl virus (TYLCV) (Geminiviridae: Begomovirus) is exclusively vectored by the whitefly Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae). TYLCV transmission depends upon a 63-kDa GroEL protein produced by the vector's endosymbiotic bacteria. B. tabaci is a species complex comprising several genetically distinct biotypes that show different secondary-symbiont fauna. In Israel, the B biotype harbors Hamiltonella, and the Q biotype harbors Wolbachia and Arsenophonus. Both biotypes harbor Rickettsia and Portiera (the obligatory primary symbionts). The aim of this study was to determine which B. tabaci symbionts are involved in TYLCV transmission using B. tabaci populations collected in Israel. Virus transmission assays by B. tabaci showed that the B biotype efficiently transmits the virus, while the Q biotype scarcely transmits it. Yeast two-hybrid and protein pulldown assays showed that while the GroEL protein produced by Hamiltonella interacts with TYLCV coat protein, GroEL produced by Rickettsia and Portiera does not. To assess the role of Wolbachia and Arsenophonus GroEL proteins (GroELs), we used an immune capture PCR (IC-PCR) assay, employing in vivo- and in vitro-synthesized GroEL proteins from all symbionts and whitefly artificial feeding through membranes. Interaction between GroEL and TYLCV was found to occur in the B biotype, but not in the Q biotype. This assay further showed that release of virions protected by GroEL occurs adjacent to the primary salivary glands. Taken together, the GroEL protein produced by Hamiltonella (present in the B biotype, but absent in the Q biotype) facilitates TYLCV transmission. The other symbionts from both biotypes do not seem to be involved in transmission of this virus.
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Affiliation(s)
- Yuval Gottlieb
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Einat Zchori-Fein
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Netta Mozes-Daube
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Svetlana Kontsedalov
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Marisa Skaljac
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Marina Brumin
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Iris Sobol
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Henryk Czosnek
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Fabrice Vavre
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Frédéric Fleury
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
| | - Murad Ghanim
- The Agricultural Research Organization (ARO), Institute of Plant Protection, Department of Entomology, Volcani Center, Bet Dagan 50250, Israel, ARO, Institute of Plant Protection, Department of Entomology, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay 30095, Israel, The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel, Université de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France, Institute for Adriatic Crops, Put Duilova 11, 21000 Split, Croatia
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Kremer N, Dedeine F, Charif D, Finet C, Allemand R, Vavre F. Do variable compensatory mechanisms explain the polymorphism of the dependence phenotype in the Asobara tabida-wolbachia association? Evolution 2010; 64:2969-79. [PMID: 20482609 DOI: 10.1111/j.1558-5646.2010.01034.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Wolbachia are symbiotic intracellular bacteria, which are classified as reproductive parasites. Although generally facultative, Wolbachia is necessary for Asobara tabida (Hymenoptera), because aposymbiotic females do not produce any offspring. Interestingly, the ovarian phenotype of aposymbiotic females is variable: some females do not produce any eggs, whereas others do produce some eggs, but these are aborted. Here, we show that the ovarian phenotype of aposymbiotic females is highly polymorphic within populations, although dependence remains complete in both cases. We also identified some lines in which aposymbiotic females were able to produce a very few viable offspring, further extending the range of variation observed. These results suggest that various factors actively maintain polymorphism. We demonstrated that Wolbachia is necessary to trigger oogenetic processes, but that the ovarian phenotype was determined by the host only. Phenotypic variation was also correlated with the differential expression of genes controlling iron homeostasis and oxidative stress, which are potentially involved in the evolution of dependence. This suggests that variation in the ovarian phenotype could reflect selection for different levels of compensatory mechanisms in response to Wolbachia infection, and that polymorphism is maintained through selection on different antagonist traits influenced by oxidative stress.
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Stouthamer R, Russell JE, Vavre F, Nunney L. Intragenomic conflict in populations infected by Parthenogenesis Inducing Wolbachia ends with irreversible loss of sexual reproduction. BMC Evol Biol 2010; 10:229. [PMID: 20667099 PMCID: PMC2927591 DOI: 10.1186/1471-2148-10-229] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2010] [Accepted: 07/28/2010] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The maternally inherited, bacterial symbiont, parthenogenesis inducing (PI) Wolbachia, causes females in some haplodiploid insects to produce daughters from both fertilized and unfertilized eggs. The symbionts, with their maternal inheritance, benefit from inducing the production of exclusively daughters, however the optimal sex ratio for the nuclear genome is more male-biased. Here we examine through models how an infection with PI-Wolbachia in a previously uninfected population leads to a genomic conflict between PI-Wolbachia and the nuclear genome. In most natural populations infected with PI-Wolbachia the infection has gone to fixation and sexual reproduction is impossible, specifically because the females have lost their ability to fertilize eggs, even when mated with functional males. RESULTS The PI Wolbachia infection by itself does not interfere with the fertilization process in infected eggs, fertilized infected eggs develop into biparental infected females. Because of the increasingly female-biased sex ratio in the population during a spreading PI-Wolbachia infection, sex allocation alleles in the host that cause the production of more sons are rapidly selected. In haplodiploid species a reduced fertilization rate leads to the production of more sons. Selection for the reduced fertilization rate leads to a spread of these alleles through both the infected and uninfected population, eventually resulting in the population becoming fixed for both the PI-Wolbachia infection and the reduced fertilization rate. Fertilization rate alleles that completely interfere with fertilization ("virginity alleles") will be selected over alleles that still allow for some fertilization. This drives the final resolution of the conflict: the irreversible loss of sexual reproduction and the complete dependence of the host on its symbiont. CONCLUSIONS This study shows that dependence among organisms can evolve rapidly due to the resolution of the conflicts between cytoplasmic and nuclear genes, and without requiring a mutualism between the partners.
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Affiliation(s)
- Richard Stouthamer
- Department of Entomology, University of California, Riverside, CA 92521, USA.
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Gueguen G, Rolain J, Zchori-Fein E, Vavre F, Fleury F, Raoult D. Molecular detection and identification of Rickettsia endosymbiont in different biotypes of Bemisia tabaci. Clin Microbiol Infect 2009; 15 Suppl 2:271-2. [DOI: 10.1111/j.1469-0691.2008.02231.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Abstract
Wolbachia bacteria are cytoplasmic endosymbionts that infect a wide range of arthropod and nematode hosts. They are transmitted from mother to offspring via the eggs (vertical transmission) and enhance their transmission to the next generation by manipulating the reproductive system of their hosts. These manipulations occur in many forms, such as the induction of cytoplasmic incompatibility, feminization, male killing and parthenogenesis induction. Wolbachia is estimated to occur in up to 66% of all insect species, but the greatest diversity of reproductive manipulations is found in the order of the Hymenoptera. Studies of Wolbachia in Drosophila-parasitoid communities have allowed for important insights into different aspects of Wolbachia biology. The extensive knowledge available on Drosophila parasitoids provides a solid base on which to test new hypotheses on host-Wolbachia interactions. The large range of Wolbachia phenotypes present in Drosophila parasitoids, combined with the recent acquisition of the bacteria from their Drosophilid hosts, make them an ideal model system to study the evolution and dynamics of Wolbachia infections, both in the laboratory as in the field. In this chapter, we aim to review the current knowledge on the associations between Wolbachia and Drosophila parasitoids, and identify open questions and specify new research directions.
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Affiliation(s)
- Fabrice Vavre
- Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622, Villeurbanne, France
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Branca A, Vavre F, Silvain JF, Dupas S. Maintenance of adaptive differentiation by Wolbachia induced bidirectional cytoplasmic incompatibility: the importance of sib-mating and genetic systems. BMC Evol Biol 2009; 9:185. [PMID: 19653892 PMCID: PMC2738673 DOI: 10.1186/1471-2148-9-185] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2008] [Accepted: 08/04/2009] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Bacteria of the genus Wolbachia are reproductive parasites widespread among arthropods. The most common effect arising from the presence of Wolbachia in a population is Cytoplasmic Incompatibility (CI), whereby postmating reproductive isolation occurs in crosses between an infected male and an uninfected female, or when a male is infected with a different strain of Wolbachia to that of the female (bidirectional CI). Previous theoretical models have demonstrated that bidirectional CI can contribute to the genetic divergence of populations in haploid and diploid organisms. However, haplodiploid organisms were not considered in these models even though they include Nasonia parasitoid wasps - the best example of the implication of Wolbachia in ongoing speciation. Moreover, previous work did not investigate inbreeding mating systems, which are frequently observed in arthropod species. RESULTS We developed a stochastic two-island model which simulated three genetic scenarios, diploidy, haploidy, and haplodiploidy, with two CI phenotypes being considered for the latter: (1) male development of female progeny; and (2) mortality of fertilized eggs. We also investigated the effect of varying the proportion of sib mating. In the model each allopatric population was initially fixed for a single allele at a nuclear locus under positive selection and infected with one strain of Wolbachia. Each simulation presupposed that the two populations were fixed for a different allele and a different strain of Wolbachia. The degree of genetic differentiation observed in the locus under selection due to bidirectional CI was much lower for the two haplodiploid phenotypes than for either diploids or haploids. Furthermore, we demonstrated that sib-mating may compensate for the lower efficiency of bidirectional CI in haplodiploids by maintaining genetic divergence. CONCLUSION Our model suggests that maintenance of genetic differentiation facilitated by Wolbachia is more likely to occur in diploids and haploids than in haplodiploids. However, increasing the level of sib-mating may compensate for the weak effect of bidirectional CI in haplodiploids. Our work therefore gives a potential explanation for why the haplodiploid Nasonia species, which are infected with bidirectionally incompatible Wolbachia strains and undergo sib-mating, have differentiated genetically and maintained this differentiation without premating isolation.
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Affiliation(s)
- Antoine Branca
- Unité de Recherche IRD 072, CNRS UPR9034, Laboratoire Evolution, Génome et Spéciation, Gif-sur-Yvette, France.
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Abstract
The invertebrate immune system, which has become a major research focus, shares basic features of innate immunity with vertebrates and men. A special feature apparently found only in invertebrates is their close association with vertically heritable symbiotic microorganisms. The validity of the simple view of symbiosis as a mutually beneficial interaction between two uneven partners mainly improving the nutritional state of the two companions has been challenged, however, as symbiotic interactions might involve more partners, and symbiotic functions of the microorganisms are much more diverse than previously assumed. Likewise, microorganisms considered to be mostly harmful to their hosts have been shown to enhance host fitness under some circumstances. The role of a symbiont itself might change between environments or life stages of the host and symbionts might have features previously thought to be specific for pathogens. Understanding symbiotic interactions requires the comprehension of the cross-talk between the symbiotic companions, and the dissection of how long-lasting infections are established without eliminating the symbiont by host immune responses. Fascinating new findings in this field revealed that symbiosis might contribute to defence against pathogens or natural enemies. New symbiont-based approaches to defeat agricultural pests or pathogen transmission by arthropod vectors are becoming conceivable.
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Affiliation(s)
- Roy Gross
- Department of Microbiology, Biocenter, University of Würzburg, Würzburg, Germany.
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Mouton L, Henri H, Charif D, Boulétreau M, Vavre F. Interaction between host genotype and environmental conditions affects bacterial density in Wolbachia symbiosis. Biol Lett 2008; 3:210-3. [PMID: 17251124 PMCID: PMC2375926 DOI: 10.1098/rsbl.2006.0590] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Regulation of microbial population density is a necessity in stable symbiotic interactions. In Wolbachia symbiosis, both bacterial and host genotypes are involved in density regulation, but environmental factors may also affect bacterial population density. Here, we studied the interaction between three strains of Wolbachia in two divergent homozygous lines of the wasp Leptopilina heterotoma at two different temperatures. Wolbachia density varied between the two host genotypes at only one temperature. Moreover, at this temperature, reciprocal-cross F1 insects displayed identical Wolbachia densities, which were intermediate between the densities in the two parental lines. While these findings confirm that the host genotype plays an important role in Wolbachia density, they also highlight its interaction with environmental conditions, making possible the evolution of local adaptations for the regulation of Wolbachia density.
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Affiliation(s)
- Laurence Mouton
- Laboratoire de Biométrie et Biologie Evolutive (UMR 5558), CNRS, Université Lyon 1, 43 boulevard 11 novembre, 69622 Villeubanne Cedex, France.
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40
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Cordaux R, Pichon S, Ling A, Pérez P, Delaunay C, Vavre F, Bouchon D, Grève P. Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont. Mol Biol Evol 2008; 25:1889-96. [PMID: 18562339 PMCID: PMC2515875 DOI: 10.1093/molbev/msn134] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The streamlined genomes of ancient obligate endosymbionts generally lack transposable elements, such as insertion sequences (IS). Yet, the genome of Wolbachia, one of the most abundant bacterial endosymbionts on Earth, is littered with IS. Such a paradox raises the question as to why there are so many ISs in the genome of this ancient endosymbiont. To address this question, we investigated IS transpositional activity in the unculturable Wolbachia by tracking the evolutionary dynamics and history of ISWpi1 elements. We show that 1) ISWpi1 is widespread in Wolbachia, being present in at least 55% of the 40 sampled strains, 2) ISWpi1 copies exhibit virtually identical nucleotide sequences both within and among Wolbachia genomes and possess an intact transposase gene, 3) individual ISWpi1 copies are differentially inserted among Wolbachia genomes, and 4) ISWpi1 occurs at variable copy numbers among Wolbachia genomes. Collectively, our results provide compelling evidence for intense ISWpi1 transpositional activity and frequent ISWpi1 horizontal transmission among strains during recent Wolbachia evolution. Thus, the genomes of ancient obligate endosymbionts can carry high loads of functional and transpositionally active transposable elements. Our results also indicate that Wolbachia genomes have experienced multiple and temporally distinct ISWpi1 invasions during their evolutionary history. Such recurrent exposition to new IS invasions may explain, at least partly, the unusually high density of transposable elements found in the genomes of Wolbachia endosymbionts.
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Affiliation(s)
- Richard Cordaux
- CNRS UMR 6556 Ecologie, Evolution, Symbiose, Université de Poitiers, Poitiers, France.
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41
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Gottlieb Y, Ghanim M, Gueguen G, Kontsedalov S, Vavre F, Fleury F, Zchori-Fein E. Inherited intracellular ecosystem: symbiotic bacteria share bacteriocytes in whiteflies. FASEB J 2008; 22:2591-9. [DOI: 10.1096/fj.07-101162] [Citation(s) in RCA: 179] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Yuval Gottlieb
- Department of Entomology the Agricultural Research OrganizationVolcani CenterBet-DaganIsrael
| | - Murad Ghanim
- Department of Entomology the Agricultural Research OrganizationVolcani CenterBet-DaganIsrael
| | - Gwenaelle Gueguen
- UMR CNRS 5558 Laboratoire de Biométrie et Biologie EvolutiveUniversité de Lyon 1VilleurbanneFrance
| | - Svetlana Kontsedalov
- Department of Entomology the Agricultural Research OrganizationVolcani CenterBet-DaganIsrael
| | - Fabrice Vavre
- UMR CNRS 5558 Laboratoire de Biométrie et Biologie EvolutiveUniversité de Lyon 1VilleurbanneFrance
| | - Frederic Fleury
- UMR CNRS 5558 Laboratoire de Biométrie et Biologie EvolutiveUniversité de Lyon 1VilleurbanneFrance
| | - Einat Zchori-Fein
- Department of Entomology the Agricultural Research OrganizationNewe Ya'ar Research CenterRamat YishayIsrael
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Abstract
Symbiotic microorganisms have had a large impact on eukaryotic evolution, with effects ranging from parasitic to mutualistic. Mitochondria and chloroplasts are prime examples of symbiotic microorganisms that have become obligate for their hosts, allowing for a dramatic extension of suitable habitats for life. Out of the extraordinary diversity of bacterial endosymbionts in insects, most are facultative for their hosts, such as the ubiquitous Wolbachia, which manipulates host reproduction. Some endosymbionts, however, have become obligatory for host reproduction and/or survival. In the parasitoid wasp Asobara tabida the presence of Wolbachia is necessary for host oogenesis, but the mechanism involved is yet unknown. We show that Wolbachia influences programmed cell death processes (a host regulatory feature typically targeted by pathogens) in A. tabida, making its presence essential for the wasps' oocytes to mature. This suggests that parasite strategies, such as bacterial regulation of host apoptosis, can drive the evolution of host dependence, allowing for a swift transition from parasitism to mutualism.
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Affiliation(s)
- Bart A Pannebakker
- Laboratoire de Biométrie et Biologie Evolutive, Unité Mixte de Recherche 5558, Centre National de la Recherche Scientifique, Université Claude Bernard Lyon 1, IFR 41, 69622 Villeurbanne Cédex, France.
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43
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Gavotte L, Henri H, Stouthamer R, Charif D, Charlat S, Boulétreau M, Vavre F. A Survey of the bacteriophage WO in the endosymbiotic bacteria Wolbachia. Mol Biol Evol 2006; 24:427-35. [PMID: 17095536 DOI: 10.1093/molbev/msl171] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Bacteriophages are common viruses infecting prokaryotes. In addition to their deadly effect, phages are also involved in several evolutionary processes of bacteria, such as coding functional proteins potentially beneficial to them, or favoring horizontal gene transfer through transduction. The particular lifestyle of obligatory intracellular bacteria usually protects them from phage infection. However, Wolbachia, an intracellular alpha-proteobacterium, infecting diverse arthropod and nematode species and best known for the reproductive alterations it induces, harbors a phage named WO, which has recently been proven to be lytic. Here, phage infection was checked in 31 Wolbachia strains, which induce 5 different effects in their hosts and infect 25 insect species and 3 nematodes. Only the Wolbachia infecting nematodes and Trichogramma were found devoid of phage infection. All the 25 detected phages were characterized by the DNA sequence of a minor capsid protein gene. Based on all data currently available, phylogenetic analyses show a lack of congruency between Wolbachia or insect and phage WO phylogenies, indicating numerous horizontal transfers of phage among the different Wolbachia strains. The absence of relation between phage phylogeny and the effects induced by Wolbachia suggests that WO is not directly involved in these effects. Implications on phage WO evolution are discussed.
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Affiliation(s)
- Laurent Gavotte
- Laboratoire de Biométrie et Biologie Evolutive (UMR 5558), CNRS, IFR 41, University Lyon 1, Villeurbanne, France.
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Mouton L, Henri H, Bouletreau M, Vavre F. Effect of temperature on Wolbachia density and impact on cytoplasmic incompatibility. Parasitology 2006; 132:49-56. [PMID: 16393353 DOI: 10.1017/s0031182005008723] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2005] [Revised: 06/27/2005] [Accepted: 06/30/2005] [Indexed: 11/06/2022]
Abstract
The outcome and the evolution of host-symbiont associations depend on environmental constraints, but responses are difficult to predict since they arise from a complex interaction between the host, the parasite and the environment. The situation can be even more complex when multiple parasite genotypes, with potentially different responses to environmental changes, coexist within a single host. In this paper, we investigated the effect of the temperature (from 14 to 26 degrees C) during the host development on the density of 3 strains of the intracellular bacterium Wolbachia that coexist within the wasp Leptopilina heterotoma. In this species, Wolbachia induces cytoplasmic incompatibility, a sperm-egg incompatibility that allows it to spread and persist in host populations. Using real-time quantitative PCR we found that (i) Wolbachia density is temperature-specific and highest at 26 degrees C; (ii) the order of the abundance of the 3 Wolbachia strains does not vary with temperature changes; (iii) the response of bacterial density to temperature occurs within a single insect generation, during the egg-to-adult developmental period; (iv) in this species, temperature-related changes in Wolbachia density do not influence cytoplasmic incompatibility.
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Affiliation(s)
- L Mouton
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université Lyon 1, 43 Bd du 11 Novembre 1918, 69622 Villeurbanne Cedex, France.
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Dedeine F, Boulétreau M, Vavre F. Wolbachia requirement for oogenesis: occurrence within the genus Asobara (Hymenoptera, Braconidae) and evidence for intraspecific variation in A. tabida. Heredity (Edinb) 2006; 95:394-400. [PMID: 16118660 DOI: 10.1038/sj.hdy.6800739] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
Wolbachia are symbiotic bacteria that induce a diversity of phenotypes on their numerous invertebrate host species. In the wasp Asobara tabida (Braconidae), each individual harbours three Wolbachia strains: wAtab3, which is required for host oogenesis, and wAtab1 and wAtab2, that do not have this function but induce cytoplasmic incompatibility. In this study, we surveyed and identified Wolbachia strains in four additional Asobara species. We detected Wolbachia in one of these species, but both the identity (based on wsp gene) and prevalence of the Wolbachia detected in natural population indicate that this host species is not dependent on Wolbachia for oogenesis. We also compared A. tabida lines of different geographical origin for their dependence on Wolbachia. All individuals from 16 A. tabida lines proved to be infected by the three Wolbachia strains wAtab1, wAtab2 and wAtab3, but, interestingly, we found variation among lines in the degree to which females were dependent on Wolbachia to produce their oocytes. In three lines, aposymbiotic females (cured from the three Wolbachia strains by antibiotics) can produce some oocytes. However, these aposymbiotic females produce fewer and smaller oocytes than symbiotic ones, and the larvae they produce die before full development. Thus, depending on which nuclear genotype they have, A. tabida females depend on Wolbachia either because they fail to produce any oocyte or because the few oocytes they do produce generate unviable offspring. We discuss the implications of these findings for the understanding of the physiological and genetic deficiency of aposymbiotic females.
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Affiliation(s)
- F Dedeine
- Biométrie et Biologie Evolutive, UMR-CNRS 5558, Université Lyon 1, 69622 Villeurbanne cédex, France.
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Mavingui P, Van VT, Labeyrie E, Rancès E, Vavre F, Simonet P. Efficient procedure for purification of obligate intracellular Wolbachia pipientis and representative amplification of its genome by multiple-displacement amplification. Appl Environ Microbiol 2005; 71:6910-7. [PMID: 16269725 PMCID: PMC1287750 DOI: 10.1128/aem.71.11.6910-6917.2005] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Bacteria belonging to the genus Wolbachia are obligatory microendocytobionts that infect a variety of arthropods and a majority of filarial nematode species, where they induce reproductive alterations or establish a mutualistic symbiosis. Although two whole genome sequences of Wolbachia pipientis, for strain wMel from Drosophila melanogaster and strain wBm from Brugia malayi, have been fully completed and six other genome sequencing projects are ongoing (http://www.genomesonline.org/index.cgi?want=Prokaryotic+Ongoin), genetic analyses of these bacteria are still scarce, mainly due to the inability to cultivate them outside of eukaryotic cells. Usually, a large amount of host tissue (a thousand individuals, or about 10 g) is required in order to purify Wolbachia and extract its DNA, which is often recovered in small amounts and contaminated by host cell DNA, thus hindering genomic studies. In this report, we describe an efficient and reliable procedure to representatively amplify the Wolbachia genome by multiple-displacement amplification from limited infected host tissue (0.2 g or 2 x 10(7) cells). We obtained sufficient amounts (8 to 10 microg) of DNA of suitable quality for genomic studies, and we demonstrated that the amplified DNA contained all of the Wolbachia loci targeted. In addition, our data indicated that the genome of strain wRi, an obligatory endosymbiont of Drosophila simulans, shares a similar overall architecture with its relative strain wMel.
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Affiliation(s)
- Patrick Mavingui
- Ecologie Microbienne UMR CNRS 5557-USC INRA 1193, Université Claude Bernard Lyon 1, Bāt. G. Mendel, 43 bd du 11 Novembre 1918, 69622 Villeurbanne, France.
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Abstract
In Hymenoptera, complete parthenogenesis, that is thelytoky, is a common phenomenon where virgin females produce only daughters. Thelytoky is often induced by bacteria of the genus Wolbachia, but can also be genetically determined by the insect itself, as in the genus Trichogramma where both forms exist. In order to compare these two forms of thelytoky, chromosome behaviour analysis in young eggs and genetic analysis of microsatellite markers were carried out in the wasp Trichogramma cacoeciae, where thelytoky is genetically determined. Microscopic studies revealed that during female gamete formation meiotic cells undergo only a single equational division followed by the expulsion of a single polar body. This absence of meiotic recombination and reduction corresponds well with the high levels of heterozygosity observed in females collected from the field and a nonsegregation pattern in the offspring of heterozygous females. We therefore concluded that diploidy in T. cacoeciae is maintained through an apomictic cloning mechanism and that the incidence of thelytoky under genetic control of the wasp differs entirely from the mechanism induced by Wolbachia infection, where thelytoky is restored through gamete duplication.
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Affiliation(s)
- F Vavre
- Laboratoire de Biométrie et Biologie Evolutive, UMR-CNRS 5558, Université Claude Bernard Lyon I, 43 Boulevard du 11 Novembre 1918, 69622 Villeurbanne Cedex, France.
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48
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Dedeine F, Vavre F, Shoemaker DD, Boulétreau M. Intra-individual coexistence of a Wolbachia strain required for host oogenesis with two strains inducing cytoplasmic incompatibility in the wasp Asobara tabida. Evolution 2005; 58:2167-74. [PMID: 15562683 DOI: 10.1111/j.0014-3820.2004.tb01595.x] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Cytoplasmically inherited symbiotic Wolbachia bacteria are known to induce a diversity of phenotypes on their numerous arthropod hosts including cytoplasmic incompatibility, male-killing, thelytokous parthenogenesis, and feminization. In the wasp Asobara tabida (Braconidae), in which all individuals harbor three genotypic Wolbachia strains (wAtab1, wAtab2 and wAtab3), the presence of Wolbachia is required for insect oogenesis. To elucidate the phenotype of each Wolbachia strain on host reproduction, especially on oogenesis, we established lines of A. tabida harboring different combinations of these three bacterial strains. We found that wAtab3 is essential for wasp oogenesis, whereas the two other strains, wAtabl and wAtab2, seem incapable to act on this function. Furthermore, interline crosses showed that strains wAtab1 and wAtab2 induce partial (about 78%) cytoplasmic incompatibility of the female mortality type. These results support the idea that bacterial genotype is a major factor determining the phenotype induced by Wolbachia on A. tabida hosts. We discuss the implications of these findings for current hypotheses regarding the evolutionary mechanisms by which females of A. tabida have become dependent on Wolbachia for oogenesis.
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Affiliation(s)
- Franck Dedeine
- Biométrie et Biologie Evolutive, Université Claude Bernard-Lyon 1, 69 622 Villeurbanne cédex, France.
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49
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Abstract
Cytoplasmic incompatibility (CI) is a sperm-egg incompatibility commonly induced by the intracellular endosymbiont bacterium Wolbachia that, in diploid species, results in embryo mortality. In haplodiploid species, two types of CI exist depending on whether the incompatible fertilized eggs develop into males (male development (MD)) or abort (female mortality (FM)). CI allows multiple infections to be maintained in host populations, and thus allows interactions to occur between co-infecting strains. In Leptopilina heterotoma, three Wolbachia strains coexist naturally (wLhet1, wLhet2, wLhet3). When these three strains are all present, they induce a CI of FM type, whereas wLhet1 alone expresses a CI phenotype intermediate between MD and FM. Here, we compare CI effects in crosses involving insect lines sharing the same nuclear background, but harboring different mixtures of strains. Mating experiments showed that: (i) wLhet2 and wLhet3 also induce an intermediate CI when acting alone, and show a bidirectional incompatibility; (ii) there is no interaction between the co-infecting strains in CI expression; (iii) the diversity of Wolbachia present within a male host influences the expression of CI: an increase in the number of strains is correlated with a decrease in the proportion of the MD type, which is also correlated with an increase in bacterial density. All these data suggest that the CI of FM type results from a stronger effect than the MD type, which conflicts with the conventional hypotheses used to explain CI diversity in haplodiploids, and could provide some new information about CI mechanisms in insects.
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Affiliation(s)
- L Mouton
- Laboratoire de Biométrie et Biologie Evolutive, Université Claude Bernard, 43 Bd du 11 Novembre 1918, 69622 Villeurbanne, France.
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50
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Mouton L, Dedeine F, Henri H, Boulétreau M, Profizi N, Vavre F. Virulence, multiple infections and regulation of symbiotic population in the Wolbachia-Asobara tabida symbiosis. Genetics 2004; 168:181-9. [PMID: 15454536 PMCID: PMC1448097 DOI: 10.1534/genetics.104.026716] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2004] [Accepted: 05/10/2004] [Indexed: 11/18/2022] Open
Abstract
The density and regulation of microbial populations are important factors in the success of symbiotic associations. High bacterial density may improve transmission to the next generation, but excessive replication could turn out to be costly to the host and result in higher virulence. Moreover, differences in virulence may also depend on the diversity of symbionts. Using the maternally transmitted symbiont Wolbachia, we investigated how bacterial density and diversity are regulated and influence virulence in host insects subject to multiple infection. The model we used was the wasp Asobara tabida that naturally harbors three different Wolbachia strains, of which two are facultative and induce cytoplasmic incompatibility, whereas the third is necessary for the host to achieve oogenesis. Using insect lines infected with different subsets of Wolbachia strains, we show that: (i) some traits of A. tabida are negatively affected by Wolbachia; (ii) the physiological cost increases with the number of co-infecting strains, which also corresponds to an increase in the total bacterial density; and (iii) the densities of the two facultative Wolbachia strains are independent of one another, whereas the obligatory strain is less abundant when it is alone, suggesting that there is some positive interaction with the other strains.
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Affiliation(s)
- Laurence Mouton
- Laboratoire de Biométrie et Biologie Evolutive (UMR-CNRS 5558), Université Claude Bernard-Lyon1, 69622 Villeurbanne Cedex, France.
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