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Luu RK, Buehler MJ. BioinspiredLLM: Conversational Large Language Model for the Mechanics of Biological and Bio-Inspired Materials. Adv Sci (Weinh) 2024; 11:e2306724. [PMID: 38145334 PMCID: PMC10933662 DOI: 10.1002/advs.202306724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 12/11/2023] [Indexed: 12/26/2023]
Abstract
The study of biological materials and bio-inspired materials science is well established; however, surprisingly little knowledge is systematically translated to engineering solutions. To accelerate discovery and guide insights, an open-source autoregressive transformer large language model (LLM), BioinspiredLLM, is reported. The model is finetuned with a corpus of over a thousand peer-reviewed articles in the field of structural biological and bio-inspired materials and can be prompted to recall information, assist with research tasks, and function as an engine for creativity. The model has proven that it is able to accurately recall information about biological materials and is further strengthened with enhanced reasoning ability, as well as with Retrieval-Augmented Generation (RAG) to incorporate new data during generation that can also help to traceback sources, update the knowledge base, and connect knowledge domains. BioinspiredLLM also has shown to develop sound hypotheses regarding biological materials design and remarkably so for materials that have never been explicitly studied before. Lastly, the model shows impressive promise in collaborating with other generative artificial intelligence models in a workflow that can reshape the traditional materials design process. This collaborative generative artificial intelligence method can stimulate and enhance bio-inspired materials design workflows. Biological materials are at a critical intersection of multiple scientific fields and models like BioinspiredLLM help to connect knowledge domains.
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Affiliation(s)
- Rachel K. Luu
- Laboratory for Atomistic and Molecular Mechanics (LAMM)Massachusetts Institute of Technology77 Massachusetts AvenueCambridgeMA02139USA
- Department of Materials Science and EngineeringMassachusetts Institute of Technology77 Massachusetts AvenueCambridgeMA02139USA
| | - Markus J. Buehler
- Laboratory for Atomistic and Molecular Mechanics (LAMM)Massachusetts Institute of Technology77 Massachusetts AvenueCambridgeMA02139USA
- Center for Computational Science and EngineeringSchwarzman College of ComputingMassachusetts Institute of Technology77 Massachusetts AvenueCambridgeMA02139USA
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Tran TD, Lee SI, Hnasko R, McGarvey JA. Biocontrol of Escherichia coli O157:H7 by Enterobacter asburiae AEB30 on intact cantaloupe melons. Microb Biotechnol 2024; 17:e14437. [PMID: 38465735 PMCID: PMC10926056 DOI: 10.1111/1751-7915.14437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 02/21/2024] [Indexed: 03/12/2024] Open
Abstract
Escherichia coli O157:H7 causes >73,000 foodborne illnesses in the United States annually, many of which have been associated with fresh ready-to-eat produce including cantaloupe melons. In this study, we created a produce-associated bacterial (PAB) library containing >7500 isolates and screened them for the ability to inhibit the growth of E. coli O157:H7 using an in vitro fluorescence-based growth assay. One isolate, identified by 16S and whole-genome sequence analysis as Enterobacter asburiae, was able to inhibit the growth of E. coli by ~30-fold in vitro and produced zones of inhibition between 13 and 21 mm against 12 E. coli outbreak strains in an agar spot assay. We demonstrated that E. asburiae AEB30 was able to grow, persist and inhibit the growth of E. coli on cantaloupe melons under simulated pre- and post-harvest conditions. Analysis of the E. asburiae AEB30 genome revealed an operon encoding a contact-dependent growth inhibition (CDI) system that when mutated resulted in the loss of E. coli growth inhibition. These data suggest that E. asburiae AEB30 is a potential biocontrol agent to prevent E. coli contamination of cantaloupe melons in both pre- and post-harvest environments and that its mode of action is via a CDI system.
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Affiliation(s)
- Thao D. Tran
- USDA, ARS, Foodborne Toxin Detection and Prevention Research UnitAlbanyCaliforniaUSA
| | - Sang In Lee
- USDA, ARS, Foodborne Toxin Detection and Prevention Research UnitAlbanyCaliforniaUSA
| | - Robert Hnasko
- USDA, ARS, Produce Safety and Microbiology Research UnitAlbanyCaliforniaUSA
| | - Jeffery A. McGarvey
- USDA, ARS, Foodborne Toxin Detection and Prevention Research UnitAlbanyCaliforniaUSA
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3
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Li H, Zhang Y, Wu C, Bi J, Chen Y, Jiang C, Cui M, Chen Y, Hou X, Yuan M, Xiong L, Yang Y, Xie K. Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity. Plant Biotechnol J 2022; 20:2258-2271. [PMID: 35984919 PMCID: PMC9674324 DOI: 10.1111/pbi.13905] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 07/27/2022] [Accepted: 07/27/2022] [Indexed: 06/15/2023]
Abstract
Plants have evolved complex signalling networks to regulate growth and defence responses under an ever-changing environment. However, the molecular mechanisms underlying the growth-defence tradeoff are largely unclear. We previously reported that rice CALCIUM-DEPENDENT PROTEIN KINASE 18 (OsCPK18) and MITOGEN-ACTIVATED PROTEIN KINASE 5 (OsMPK5) mutually phosphorylate each other and that OsCPK18 phosphorylates and positively regulates OsMPK5 to suppress rice immunity. In this study, we found that OsCPK18 and its paralog OsCPK4 positively regulate plant height and yield-related traits. Further analysis reveals that OsCPK18 and OsMPK5 synergistically regulate defence-related genes but differentially regulate development-related genes. In vitro and in vivo kinase assays demonstrated that OsMPK5 phosphorylates C-terminal threonine (T505) and serine (S512) residues of OsCPK18 and OsCPK4, respectively. The kinase activity of OsCPK18T505D , in which T505 was replaced by aspartic acid to mimic T505 phosphorylation, displayed less calcium sensitivity than that of wild-type OsCPK18. Interestingly, editing the MAPK phosphorylation motif in OsCPK18 and its paralog OsCPK4, which deprives OsMPK5-mediated phosphorylation but retains calcium-dependent activation of kinase activity, simultaneously increases rice yields and immunity. This editing event also changed the last seven amino acid residues of OsCPK18 and attenuated its binding with OsMPK5. This study presents a new regulatory circuit that fine tunes the growth-defence tradeoff by modulating OsCPK18/4 activity and suggests that CRISPR/Cas9-mediated engineering phosphorylation pathways could simultaneously improve crop yield and immunity.
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Affiliation(s)
- Hong Li
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
- Shenzhen Institute of Nutrition and HealthHuazhong Agricultural UniversityWuhanChina
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at ShenzhenChinese Academy of Agricultural SciencesShenzhenChina
| | - Yun Zhang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Caiyun Wu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Jinpeng Bi
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Yache Chen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Changjin Jiang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Miaomiao Cui
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Yuedan Chen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
| | - Xin Hou
- State Key Laboratory of Hybrid RiceWuhan UniversityWuhanChina
| | - Meng Yuan
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Lizhong Xiong
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Yinong Yang
- Department of Plant Pathology and Environmental Microbiology, The Huck Institutes of Life SciencesThe Pennsylvania State UniversityUniversity ParkPennsylvaniaUSA
| | - Kabin Xie
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
- Hubei Key Laboratory of Plant PathologyHuazhong Agricultural UniversityWuhanChina
- Shenzhen Institute of Nutrition and HealthHuazhong Agricultural UniversityWuhanChina
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at ShenzhenChinese Academy of Agricultural SciencesShenzhenChina
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Cohn AR, Orsi RH, Carroll LM, Liao J, Wiedmann M, Cheng RA. Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle. Front Microbiol 2022; 13:1005215. [PMID: 36532462 PMCID: PMC9748477 DOI: 10.3389/fmicb.2022.1005215] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 11/07/2022] [Indexed: 07/30/2023] Open
Abstract
Salmonella enterica subsp. enterica (S.) serovar Cerro is rarely isolated from human clinical cases of salmonellosis but represents the most common serovar isolated from cattle without clinical signs of illness in the United States. In this study, using a large, diverse set of 316 isolates, we utilized genomic methods to further elucidate the evolutionary history of S. Cerro and to identify genomic features associated with its apparent virulence attenuation in humans. Phylogenetic analyses showed that within this polyphyletic serovar, 98.4% of isolates (311/316) represent a monophyletic clade within section Typhi and the remaining 1.6% of isolates (5/316) form a monophyletic clade within subspecies enterica Clade A1. Of the section Typhi S. Cerro isolates, 93.2% of isolates (290/311) clustered into a large clonal clade comprised of predominantly sequence type (ST) 367 cattle and environmental isolates, while the remaining 6.8% of isolates (21/311), primarily from human clinical sources, clustered outside of this clonal clade. A tip-dated phylogeny of S. Cerro ST367 identified two major clades (I and II), one of which overwhelmingly consisted of cattle isolates that share a most recent common ancestor that existed circa 1975. Gene presence/absence and rarefaction curve analyses suggested that the pangenome of section Typhi S. Cerro is open, potentially reflecting the gain/loss of prophage; human isolates contained the most open pangenome, while cattle isolates had the least open pangenome. Hypothetically disrupted coding sequences (HDCs) displayed clade-specific losses of intact speC and sopA virulence genes within the large clonal S. Cerro clade, while loss of intact vgrG, araH, and vapC occurred in all section Typhi S. Cerro isolates. Further phenotypic analysis suggested that the presence of a premature stop codon in speC does not abolish ornithine decarboxylase activity in S. Cerro, likely due to the activity of the second ornithine decarboxylase encoded by speF, which remained intact in all isolates. Overall, our study identifies specific genomic features associated with S. Cerro's infrequent isolation from humans and its apparent adaptation to cattle, which has broader implications for informing our understanding of the evolutionary events facilitating host adaptation in Salmonella.
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Affiliation(s)
- Alexa R. Cohn
- Department of Food Science, Cornell University, Ithaca, NY, United States
| | - Renato H. Orsi
- Department of Food Science, Cornell University, Ithaca, NY, United States
| | - Laura M. Carroll
- Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
| | - Jingqiu Liao
- Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, United States
| | - Martin Wiedmann
- Department of Food Science, Cornell University, Ithaca, NY, United States
| | - Rachel A. Cheng
- Department of Food Science, Cornell University, Ithaca, NY, United States
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Guizzo MG, Budachetri K, Adegoke A, Ribeiro JMC, Karim S. Rickettsia parkeri infection modulates the sialome and ovariome of the Gulf coast tick, Amblyomma maculatum. Front Microbiol 2022; 13:1023980. [PMID: 36439862 PMCID: PMC9684213 DOI: 10.3389/fmicb.2022.1023980] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Accepted: 10/06/2022] [Indexed: 07/21/2023] Open
Abstract
The Gulf Coast tick, Amblyomma maculatum, is a vector of several tick-borne pathogens, including Rickettsia parkeri. The ability of R. parkeri to persist within the tick population through transovarial and transstadial transmission, without apparently harming the ticks, contributes to the pathogen's perpetuation in the tick population. Previous studies have shown that the R. parkeri load in A. maculatum is regulated by the tick tissues' oxidant/antioxidant balance and the non-pathogenic tick microbiome. To obtain further insights into the interaction between tick and pathogen, we performed a bulk RNA-Seq for differential transcriptomic analysis of ovaries and salivary glands from R. parkeri-infected and uninfected ticks over the feeding course on a host. The most differentially expressed functional category was of bacterial origin, exhibiting a massive overexpression of bacterial transcripts in response to the R. parkeri infection. Candidatus Midichloria mitochondrii and bacteria from the genus Rickettsia were mainly responsible for the overexpression of bacterial transcripts. Host genes were also modulated in R. parkeri-infected tick organs. A similar number of host transcripts from all analyzed functional categories was negatively and positively modulated, revealing a global alteration of the A. maculatum transcriptome in response to pathogen infection. R. parkeri infection led to an increase in salivary transcripts involved in blood feeding success as well as a decrease in ovarian immune transcripts. We hypothesize that these transcriptional alterations facilitate pathogen persistence and transmission within tick population.
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Affiliation(s)
- Melina Garcia Guizzo
- Vector Biology Section, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, United States
| | - Khemraj Budachetri
- School of Biological, Environmental, and Earth Sciences, The University of Southern Mississippi, Hattiesburg, MS, United States
| | - Abdulsalam Adegoke
- School of Biological, Environmental, and Earth Sciences, The University of Southern Mississippi, Hattiesburg, MS, United States
| | - Jose M. C. Ribeiro
- Vector Biology Section, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, United States
| | - Shahid Karim
- School of Biological, Environmental, and Earth Sciences, The University of Southern Mississippi, Hattiesburg, MS, United States
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Illán JG, Zhu G, Walgenbach JF, Acebes‐Doria A, Agnello AM, Alston DG, Andrews H, Beers EH, Bergh JC, Bessin RT, Blaauw BR, Buntin GD, Burkness EC, Cullum JP, Daane KM, Fann LE, Fisher J, Girod P, Gut LJ, Hamilton GC, Hepler JR, Hilton R, Hoelmer KA, Hutchison WD, Jentsch PJ, Joseph SV, Kennedy GG, Krawczyk G, Kuhar TP, Lee JC, Leskey TC, Marshal AT, Milnes JM, Nielsen AL, Patel DK, Peterson HD, Reisig DD, Rijal JP, Sial AA, Spears LR, Stahl JM, Tatman KM, Taylor SV, Tillman G, Toews MD, Villanueva RT, Welty C, Wiman NG, Wilson JK, Zalom FG, Crowder DW. Evaluating invasion risk and population dynamics of the brown marmorated stink bug across the contiguous United States. Pest Manag Sci 2022; 78:4929-4938. [PMID: 36054536 PMCID: PMC9804287 DOI: 10.1002/ps.7113] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/28/2021] [Revised: 07/12/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Invasive species threaten the productivity and stability of natural and managed ecosystems. Predicting the spread of invaders, which can aid in early mitigation efforts, is a major challenge, especially in the face of climate change. While ecological niche models are effective tools to assess habitat suitability for invaders, such models have rarely been created for invasive pest species with rapidly expanding ranges. Here, we leveraged a national monitoring effort from 543 sites over 3 years to assess factors mediating the occurrence and abundance of brown marmorated stink bug (BMSB, Halyomorpha halys), an invasive insect pest that has readily established throughout much of the United States. RESULTS We used maximum entropy models to estimate the suitable habitat of BMSB under several climate scenarios, and generalized boosted models to assess environmental factors that regulated BMSB abundance. Our models captured BMSB distribution and abundance with high accuracy, and predicted a 70% increase in suitable habitat under future climate scenarios. However, environmental factors that mediated the geographical distribution of BMSB were different from those driving abundance. While BMSB occurrence was most affected by winter precipitation and proximity to populated areas, BMSB abundance was influenced most strongly by evapotranspiration and solar photoperiod. CONCLUSION Our results suggest that linking models of establishment (occurrence) and population dynamics (abundance) offers a more effective way to forecast the spread and impact of BMSB and other invasive species than simply occurrence-based models, allowing for targeted mitigation efforts. Implications of distribution shifts under climate change are discussed. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Santander RD, Khodadadi F, Meredith CL, Rađenović Ž, Clements J, Aćimović SG. Fire blight resistance, irrigation and conducive wet weather improve Erwinia amylovora winter survival in cankers. Front Microbiol 2022; 13:1009364. [PMID: 36329850 PMCID: PMC9623323 DOI: 10.3389/fmicb.2022.1009364] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 09/21/2022] [Indexed: 07/30/2023] Open
Abstract
Erwinia amylovora causes fire blight, a disease responsible for enormous economic losses in the pome fruit-producing areas where it is present. Despite the abundant research on fire blight, information about E. amylovora population dynamics and survival in fire blight cankers and the plant defense responses to this pathogen in the infected bark are limited. In our study, we obtained fire blight cankers in apple, pear, and Asian pear cultivars showing differing resistance to the disease by shoot inoculation with E. amylovora. We collected cankers from irrigated and non-irrigated trees every 3 months in two independent field experiments and analyzed samples by viability digital PCR. We also assessed the expression of pathogenicity-related (PR) genes in the bark of selected apple and Asian pear cultivars. A logistic regression analysis revealed the impact of environmental and host factors on E. amylovora detection rates in cankers. The chances of detecting live E. amylovora cells in cankers increased significantly in those collected from irrigated trees, in July, and/or during an experiment performed in a year with an expected average rainfall when compared to samples from non-irrigated trees, collected in January, and/or during an experiment performed under environmental conditions dominated by drought. We found a positive correlation between the pathogen detection rates in cankers and the host resistance to fire blight that might be explained by lower E. amylovora survival rates in more damaged tissues of susceptible hosts. The genes PR-1, PR-2, PR-5, and PR-8 were induced in the bark surrounding apple and Asian pear fire blight cankers. Our study, involving the analysis of more than 800 canker samples, provides new knowledge about the fire blight disease cycle and lays the foundation for improved fire blight management and eradication strategies in pome fruit orchards.
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Affiliation(s)
- Ricardo D. Santander
- Irrigated Agriculture Research and Extension Center, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Prosser, WA, United States
- Hudson Valley Research Laboratory, School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Highland, NY, United States
| | - Fatemeh Khodadadi
- Alson H. Smith Jr. Agricultural Research and Extension Center, School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Winchester, VA, United States
| | - Christopher L. Meredith
- Hudson Valley Research Laboratory, School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Highland, NY, United States
| | - Željko Rađenović
- Hudson Valley Research Laboratory, School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell University, Highland, NY, United States
| | - Jon Clements
- Center for Agriculture, Food, and the Environment, University of Massachusetts Amherst, UMass Cold Spring Orchard, Belchertown, MA, United States
| | - Srđan G. Aćimović
- Alson H. Smith Jr. Agricultural Research and Extension Center, School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Winchester, VA, United States
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Russell KA, McFrederick QS. Floral nectar microbial communities exhibit seasonal shifts associated with extreme heat: Potential implications for climate change and plant-pollinator interactions. Front Microbiol 2022; 13:931291. [PMID: 36090097 PMCID: PMC9453676 DOI: 10.3389/fmicb.2022.931291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 07/25/2022] [Indexed: 11/13/2022] Open
Abstract
Floral nectar contains vital nutrients for pollinators, including sugars, amino acids, proteins, and secondary compounds. As pollinators forage, they inoculate nectar with bacteria and fungi. These microbes can colonize nectaries and alter nectar properties, including volume and chemistry. Abiotic factors, such as temperature, can influence microbial community structure and nectar traits. Considering current climate change conditions, studying the effects of increased temperature on ecosystem processes like pollination is ever more important. In a manipulative field experiment, we used a passive-heating technique to increase the ambient temperature of a California native plant, Penstemon heterophyllus, to test the hypothesis that temperatures elevated an average of 0.5°C will affect nectar properties and nectar-inhabiting microbial communities. We found that passive-heat treatment did not affect nectar properties or microbial communities. Penstemon heterophyllus fruit set also was not affected by passive-heat treatments, and neither was capsule mass, however plants subjected to heat treatments produced significantly more seeds than control. Although we conducted pollinator surveys, no pollinators were recorded for the duration of our experiment. A naturally occurring extreme temperature event did, however, have large effects on nectar sugars and nectar-inhabiting microbial communities. The initially dominant Lactobacillus sp. was replaced by Sediminibacterium, while Mesorhizobium, and Acinetobacter persisted suggesting that extreme temperatures can interrupt nectar microbiome community assembly. Our study indicates that the quality and attractiveness of nectar under climate change conditions could have implications on plant-pollinator interactions.
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Hollick JR, Kubota C. Effect of Self- and Inter-Cultivar Grafting on Growth and Nutrient Content in Sweet Basil ( Ocimum basilicum L.). Front Plant Sci 2022; 13:921440. [PMID: 35958205 PMCID: PMC9363131 DOI: 10.3389/fpls.2022.921440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 06/21/2022] [Indexed: 06/15/2023]
Abstract
Vegetable grafting has been applied to fruiting crops, yet only to a limited extent in leafy greens and herbs which may also benefit from grafting. In this study, we examined the effect of reciprocal grafting two sweet basil (Ocimum basilicum L.) cultivars of differing vigor on plant growth and leaf mineral nutrient concentration to test whether differences in growth exist due to grafting and whether such differences are due to altered plant nutrient status in two trials. Two cultivars 'Nufar' (NU), a high vigor cultivar, and 'Dolce Fresca' (DF), a cultivar developed for compact growth, were selected. Four grafted treatments (scion/rootstock) were created by self-grafting (NU/NU and DF/DF) and reciprocal inter-cultivar grafting (DF/NU and NU/DF). Un-grafted plants (ug-NU and ug-DF) served as controls. Following grafting, plants were grown for 26 or 21 days in a greenhouse. DF rootstocks decreased NU shoot dry mass (19-29%) and stem length (12%) compared to ug-NU in both trials, while dry root mass was reduced (28%) in the second trial. In contrast, NU rootstocks did not affect DF growth in the first trial but significantly decreased dry shoot (18%) and root (31%) mass, compared to ug-DF in the second. Concentration of most inorganic nutrients examined was affected by both rootstock and scion genotype. For NU scions, DF rootstocks resulted in significantly higher (5-29%) levels of nitrogen, phosphorus, potassium, calcium, magnesium, sulfur, copper, and zinc in leaf tissue than ug-NU. For DF scions, NU rootstocks resulted in significantly higher (7-9%) levels of potassium and phosphorus but significantly lower (11-23%) levels of magnesium, sulfur, boron, copper, and zinc when compared to ug-DF. Results of this study show that inter-cultivar grafting sweet basil using a more vigorous cultivar as a rootstock did not enhance the growth of a less vigorous scion and reduced concentrations of certain nutrients. However, grafting a vigorous scion to a less vigorous rootstock reduced shoot growth but generally increased nutrient concentrations. This suggests that changes in growth in grafted basil are not due to altered nutrient status. Further research is needed to determine specific physiological processes influencing grafted basil growth.
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Ranjitkar S, Duan JE, Srirattana K, Alqahtani F, Tulman ER, Mandoiu I, Venkitanarayanan K, Tian X. Transcriptomic Responses of Mycoplasma bovis Upon Treatments of trans-Cinnamaldehyde, Carvacrol, and Eugenol. Front Microbiol 2022; 13:888433. [PMID: 35733968 PMCID: PMC9207385 DOI: 10.3389/fmicb.2022.888433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 04/11/2022] [Indexed: 11/13/2022] Open
Abstract
Mycoplasma bovis (M. bovis) is an insidious, wall-less primary bacterial pathogen that causes bovine pneumonia, mid-ear infection, mastitis, and arthritis. The economic losses caused by M. bovis due to culling, diminished milk production, and feed conversion are underestimated because of poor diagnosis/recognition. Treatment with common antibiotics targeting the cell wall is ineffective. Plant-derived antimicrobials (PDAs) such as food-grade trans-cinnamaldehyde (TC), eugenol (EU), and carvacrol (CAR) are inexpensive and generally regarded as safe for humans and animals yet possess strong anti-bacterial properties. In preliminary studies, we found that all three PDAs inhibited the growth of M. bovis in vitro. Through RNA sequencing, we report here that CAR affected the expression of 153 genes which included the downregulation of energy generation-related proteins, pentose phosphate pathway, and upregulation of ribosomes and translation-related proteins. Few differentially expressed genes were found when M. bovis was treated with TC, EU, or when the three PDAs were double or triple combined. Our results suggest that, as opposed to the effect of CAR, the growth-inhibitory effects of TC and EU at levels tested may be exerted through mechanisms other than gene expression regulations.
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Affiliation(s)
- Saurav Ranjitkar
- Department of Animal Science, University of Connecticut, Storrs, CT, United States
| | - Jingyue Ellie Duan
- Department of Animal Science, University of Connecticut, Storrs, CT, United States
| | - Kanokwan Srirattana
- Department of Animal Science, University of Connecticut, Storrs, CT, United States
| | - Fahad Alqahtani
- National Center for Bioinformatics, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Edan R. Tulman
- Department of Pathobiology and Veterinary Science, University of Connecticut, Storrs, CT, United States
| | - Ion Mandoiu
- Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, United States
| | | | - Xiuchun Tian
- Department of Animal Science, University of Connecticut, Storrs, CT, United States
- *Correspondence: Xiuchun Tian,
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11
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McClure KM, Bastille‐Rousseau G, Davis AJ, Stengel CA, Nelson KM, Chipman RB, Wittemyer G, Abdo Z, Gilbert AT, Pepin KM. Accounting for animal movement improves vaccination strategies against wildlife disease in heterogeneous landscapes. Ecol Appl 2022; 32:e2568. [PMID: 35138667 PMCID: PMC9285612 DOI: 10.1002/eap.2568] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 08/28/2021] [Accepted: 10/15/2021] [Indexed: 06/14/2023]
Abstract
Oral baiting is used to deliver vaccines to wildlife to prevent, control, and eliminate infectious diseases. A central challenge is how to spatially distribute baits to maximize encounters by target animal populations, particularly in urban and suburban areas where wildlife such as raccoons (Procyon lotor) are abundant and baits are delivered along roads. Methods from movement ecology that quantify movement and habitat selection could help to optimize baiting strategies by more effectively targeting wildlife populations across space. We developed a spatially explicit, individual-based model of raccoon movement and oral rabies vaccine seroconversion to examine whether and when baiting strategies that match raccoon movement patterns perform better than currently used baiting strategies in an oral rabies vaccination zone in greater Burlington, Vermont, USA. Habitat selection patterns estimated from locally radio-collared raccoons were used to parameterize movement simulations. We then used our simulations to estimate raccoon population rabies seroprevalence under currently used baiting strategies (actual baiting) relative to habitat selection-based baiting strategies (habitat baiting). We conducted simulations on the Burlington landscape and artificial landscapes that varied in heterogeneity relative to Burlington in the proportion and patch size of preferred habitats. We found that the benefits of habitat baiting strongly depended on the magnitude and variability of raccoon habitat selection and the degree of landscape heterogeneity within the baiting area. Habitat baiting improved seroprevalence over actual baiting for raccoons characterized as habitat specialists but not for raccoons that displayed weak habitat selection similar to radiocollared individuals, except when baits were delivered off roads where preferred habitat coverage and complexity was more pronounced. In contrast, in artificial landscapes with either more strongly juxtaposed favored habitats and/or higher proportions of favored habitats, habitat baiting performed better than actual baiting, even when raccoons displayed weak habitat preferences and where baiting was constrained to roads. Our results suggest that habitat selection-based baiting could increase raccoon population seroprevalence in urban-suburban areas, where practical, given the heterogeneity and availability of preferred habitat types in those areas. Our novel simulation approach provides a flexible framework to test alternative baiting strategies in multiclass landscapes to optimize bait-distribution strategies.
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Affiliation(s)
- Katherine M. McClure
- National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureFort CollinsColoradoUSA
- Department of Microbiology, Immunology, and PathologyColorado State UniversityFort CollinsColoradoUSA
- Present address:
Hawai‘i Cooperative Studies UnitUniversity of Hawai‘i at HiloHiloHawai‘iUSA
| | - Guillaume Bastille‐Rousseau
- National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureFort CollinsColoradoUSA
- Cooperative Wildlife Research LaboratorySouthern Illinois UniversityCarbondaleIllinoisUSA
| | - Amy J. Davis
- National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureFort CollinsColoradoUSA
| | - Carolyn A. Stengel
- Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureConcordNew HampshireUSA
| | - Kathleen M. Nelson
- National Rabies Management Program, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureConcordNew HampshireUSA
| | - Richard B. Chipman
- National Rabies Management Program, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureConcordNew HampshireUSA
| | - George Wittemyer
- Fish, Wildlife, and Conservation BiologyColorado State UniversityFort CollinsColoradoUSA
| | - Zaid Abdo
- Department of Microbiology, Immunology, and PathologyColorado State UniversityFort CollinsColoradoUSA
| | - Amy T. Gilbert
- National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureFort CollinsColoradoUSA
| | - Kim M. Pepin
- National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection ServiceUnited States Department of AgricultureFort CollinsColoradoUSA
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12
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Meunier F, Visser MD, Shiklomanov A, Dietze MC, Guzmán Q. JA, Sanchez‐Azofeifa GA, De Deurwaerder HPT, Krishna Moorthy SM, Schnitzer SA, Marvin DC, Longo M, Liu C, Broadbent EN, Almeyda Zambrano AM, Muller‐Landau HC, Detto M, Verbeeck H. Liana optical traits increase tropical forest albedo and reduce ecosystem productivity. Glob Chang Biol 2022; 28:227-244. [PMID: 34651375 PMCID: PMC9298317 DOI: 10.1111/gcb.15928] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 09/30/2021] [Accepted: 10/07/2021] [Indexed: 06/13/2023]
Abstract
Lianas are a key growth form in tropical forests. Their lack of self-supporting tissues and their vertical position on top of the canopy make them strong competitors of resources. A few pioneer studies have shown that liana optical traits differ on average from those of colocated trees. Those trait discrepancies were hypothesized to be responsible for the competitive advantage of lianas over trees. Yet, in the absence of reliable modelling tools, it is impossible to unravel their impact on the forest energy balance, light competition, and on the liana success in Neotropical forests. To bridge this gap, we performed a meta-analysis of the literature to gather all published liana leaf optical spectra, as well as all canopy spectra measured over different levels of liana infestation. We then used a Bayesian data assimilation framework applied to two radiative transfer models (RTMs) covering the leaf and canopy scales to derive tropical tree and liana trait distributions, which finally informed a full dynamic vegetation model. According to the RTMs inversion, lianas grew thinner, more horizontal leaves with lower pigment concentrations. Those traits made the lianas very efficient at light interception and significantly modified the forest energy balance and its carbon cycle. While forest albedo increased by 14% in the shortwave, light availability was reduced in the understorey (-30% of the PAR radiation) and soil temperature decreased by 0.5°C. Those liana-specific traits were also responsible for a significant reduction of tree (-19%) and ecosystem (-7%) gross primary productivity (GPP) while lianas benefited from them (their GPP increased by +27%). This study provides a novel mechanistic explanation to the increase in liana abundance, new evidence of the impact of lianas on forest functioning, and paves the way for the evaluation of the large-scale impacts of lianas on forest biogeochemical cycles.
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Affiliation(s)
- Félicien Meunier
- CAVElab—Computational and Applied Vegetation EcologyDepartment of EnvironmentGhent UniversityGhentBelgium
- Department of Earth and EnvironmentBoston UniversityBostonMassachusettsUSA
| | - Marco D. Visser
- Department of Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNew JerseyUSA
- Institute of Environmental SciencesLeiden UniversityLeidenThe Netherlands
| | | | - Michael C. Dietze
- Department of Earth and EnvironmentBoston UniversityBostonMassachusettsUSA
| | - J. Antonio Guzmán Q.
- Centre for Earth Observation Sciences (CEOS)Earth and Atmospheric Sciences DepartmentUniversity of AlbertaEdmontonAlbertaCanada
| | - G. Arturo Sanchez‐Azofeifa
- Centre for Earth Observation Sciences (CEOS)Earth and Atmospheric Sciences DepartmentUniversity of AlbertaEdmontonAlbertaCanada
- Smithsonian Tropical Research InstituteBalboaPanama
| | | | - Sruthi M. Krishna Moorthy
- CAVElab—Computational and Applied Vegetation EcologyDepartment of EnvironmentGhent UniversityGhentBelgium
| | - Stefan A. Schnitzer
- Smithsonian Tropical Research InstituteBalboaPanama
- Department of Biological SciencesMarquette UniversityMilwaukeeWisconsinUSA
| | | | - Marcos Longo
- Jet Propulsion LaboratoryCalifornia Institute of TechnologyPasadenaCaliforniaUSA
| | - Chang Liu
- CAVElab—Computational and Applied Vegetation EcologyDepartment of EnvironmentGhent UniversityGhentBelgium
| | - Eben N. Broadbent
- Spatial Ecology and Conservation (SPEC) Lab, School of Forest, Fisheries, and Geomatics SciencesUniversity of FloridaGainesvilleFloridaUSA
- Spatial Ecology and Conservation (SPEC) Lab, Center for Latin American StudiesUniversity of FloridaGainesvilleFloridaUSA
| | - Angelica M. Almeyda Zambrano
- Spatial Ecology and Conservation (SPEC) Lab, Center for Latin American StudiesUniversity of FloridaGainesvilleFloridaUSA
| | | | - Matteo Detto
- Department of Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNew JerseyUSA
- Smithsonian Tropical Research InstituteBalboaPanama
| | - Hans Verbeeck
- CAVElab—Computational and Applied Vegetation EcologyDepartment of EnvironmentGhent UniversityGhentBelgium
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13
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Primieri S, Magnoli SM, Koffel T, Stürmer SL, Bever JD. Perennial, but not annual legumes synergistically benefit from infection with arbuscular mycorrhizal fungi and rhizobia: a meta-analysis. New Phytol 2022; 233:505-514. [PMID: 34626495 PMCID: PMC9298428 DOI: 10.1111/nph.17787] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 10/04/2021] [Indexed: 05/17/2023]
Abstract
Many plant species simultaneously interact with multiple symbionts, which can, but do not always, generate synergistic benefits for their host. We ask if plant life history (i.e. annual vs perennial) can play an important role in the outcomes of the tripartite symbiosis of legumes, arbuscular mycorrhizal fungi (AMF), and rhizobia. We performed a meta-analysis of 88 studies examining outcomes of legume-AMF-rhizobia interactions on plant and microbial growth. Perennial legumes associating with AMF and rhizobia grew larger than expected based on their response to either symbiont alone (i.e. their response to co-inoculation was synergistic). By contrast, annual legume growth with co-inoculation did not differ from additive expectations. AMF and rhizobia differentially increased phosphorus (P) and nitrogen (N) tissue concentration. Rhizobium nodulation increased with mycorrhizal fungi inoculation, but mycorrhizal fungi colonization did not increase with rhizobium inoculation. Microbial responses to co-infection were significantly correlated with synergisms in plant growth. Our work supports a balanced plant stoichiometry mechanism for synergistic benefits. We find that synergisms are in part driven by reinvestment in complementary symbionts, and that time-lags in realizing benefits of reinvestment may limit synergisms in annuals. Optimization of microbiome composition to maximize synergisms may be critical to productivity, particularly for perennial legumes.
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Affiliation(s)
- Silmar Primieri
- Instituto Federal de Santa Catarina (IFSC)Câmpus LagesLagesSC88506‐400Brazil
| | | | - Thomas Koffel
- W. K. Kellogg Biological StationMichigan State UniversityHickory CornersMI49060USA
- Program in Ecology, Evolutionary Biology and BehaviorDepartments of Plant Biology and Integrative BiologyMichigan State UniversityEast LansingMI48823USA
| | - Sidney L. Stürmer
- Departamento de Ciências NaturaisUniversidade Regional de BlumenauBlumenauSC89030‐903Brazil
| | - James D. Bever
- Kansas Biological SurveyUniversity of KansasLawrenceKS66047USA
- Department of Ecology and Evolutionary BiologyUniversity of KansasLawrenceKS66045USA
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Mahood AL, Jones RO, Board DI, Balch JK, Chambers JC. Interannual climate variability mediates changes in carbon and nitrogen pools caused by annual grass invasion in a semiarid shrubland. Glob Chang Biol 2022; 28:267-284. [PMID: 34614268 PMCID: PMC9291498 DOI: 10.1111/gcb.15921] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 09/26/2021] [Indexed: 05/13/2023]
Abstract
Exotic plant invasions alter ecosystem properties and threaten ecosystem functions globally. Interannual climate variability (ICV) influences both plant community composition (PCC) and soil properties, and interactions between ICV and PCC may influence nitrogen (N) and carbon (C) pools. We asked how ICV and non-native annual grass invasion covary to influence soil and plant N and C in a semiarid shrubland undergoing widespread ecosystem transformation due to invasions and altered fire regimes. We sampled four progressive stages of annual grass invasion at 20 sites across a large (25,000 km2 ) landscape for plant community composition, plant tissue N and C, and soil total N and C in 2013 and 2016, which followed 2 years of dry and wet conditions, respectively. Multivariate analyses and ANOVAs showed that in invasion stages where native shrub and perennial grass and forb communities were replaced by annual grass-dominated communities, the ecosystem lost more soil N and C in wet years. Path analysis showed that high water availability led to higher herbaceous cover in all invasion stages. In stages with native shrubs and perennial grasses, higher perennial grass cover was associated with increased soil C and N, while in annual-dominated stages, higher annual grass cover was associated with losses of soil C and N. Also, soil total C and C:N ratios were more homogeneous in annual-dominated invasion stages as indicated by within-site standard deviations. Loss of native shrubs and perennial grasses and forbs coupled with annual grass invasion may lead to long-term declines in soil N and C and hamper restoration efforts. Restoration strategies that use innovative techniques and novel species to address increasing temperatures and ICV and emphasize maintaining plant community structure-shrubs, grasses, and forbs-will allow sagebrush ecosystems to maintain C sequestration, soil fertility, and soil heterogeneity.
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Affiliation(s)
- Adam L. Mahood
- Department of GeographyUniversity of Colorado BoulderBoulderColoradoUSA
- Earth LabUniversity of ColoradoBoulderColoradoUSA
| | - Rachel O. Jones
- Department of Biological & Ecological EngineeringOregon State UniversityCorvallisOregonUSA
| | - David I. Board
- US Forest ServiceRocky Mountain Research StationRenoNevadaUSA
| | - Jennifer K. Balch
- Department of GeographyUniversity of Colorado BoulderBoulderColoradoUSA
- Earth LabUniversity of ColoradoBoulderColoradoUSA
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15
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Mosby CA, Bhar S, Phillips MB, Edelmann MJ, Jones MK. Interaction with mammalian enteric viruses alters outer membrane vesicle production and content by commensal bacteria. J Extracell Vesicles 2022; 11:e12172. [PMID: 34981901 PMCID: PMC8725172 DOI: 10.1002/jev2.12172] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 11/09/2021] [Accepted: 11/13/2021] [Indexed: 01/22/2023] Open
Abstract
Intestinal commensal bacteria contribute to maintaining gut homeostasis. Disruptions to the commensal flora are linked to the development and persistence of disease. The importance of these organisms is further demonstrated by the widespread ability of enteric viruses to exploit commensal bacteria to enhance viral infection. These viruses interact directly with commensal bacteria, and while the impact of this interaction on viral infection is well described for several viruses, the impact on the commensal bacteria has yet to be explored. In this article, we demonstrate, for the first time, that enteric viruses alter the gene expression and phenotype of individual commensal bacteria. Human and murine norovirus interaction with bacteria resulted in genome-wide differential gene expression and marked changes in the surface architecture of the bacterial cells. Furthermore, the interaction of the virus with bacteria led to increased production of smaller outer membrane vesicles (OMVs). Enhanced production of smaller vesicles was also observed when noroviruses were incubated with other commensal bacteria, indicating a potentially broad impact of norovirus interaction. The vesicle production observed in the in vivo model followed a similar trend where an increased quantity of smaller bacterial vesicles was observed in stool collected from virus-infected mice compared to mock-infected mice. Furthermore, changes in vesicle size were linked to changes in protein content and abundance, indicating that viral binding induced a shift in the mechanism of the OMV biogenesis. Collectively, these data demonstrate that enteric viruses induce specific changes in bacterial gene expression, leading to changes in bacterial extracellular vesicle production that can potentially impact host responses to infection.
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Affiliation(s)
- Chanel A. Mosby
- Microbiology and Cell Science DepartmentIFASUniversity of FloridaGainesvilleFloridaUSA
| | - Sutonuka Bhar
- Microbiology and Cell Science DepartmentIFASUniversity of FloridaGainesvilleFloridaUSA
| | - Matthew B. Phillips
- Department of Molecular Genetics and MicrobiologyCollege of MedicineUniversity of FloridaGainesvilleFloridaUSA
| | - Mariola J. Edelmann
- Microbiology and Cell Science DepartmentIFASUniversity of FloridaGainesvilleFloridaUSA
| | - Melissa K. Jones
- Microbiology and Cell Science DepartmentIFASUniversity of FloridaGainesvilleFloridaUSA
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Hsu J, Chou M, Mau RFL, Maeda C, Shikano I, Manoukis NC, Vargas RI. Spinosad resistance in field populations of melon fly, Zeugodacus cucurbitae (Coquillett), in Hawaii. Pest Manag Sci 2021; 77:5439-5444. [PMID: 34331843 PMCID: PMC9290140 DOI: 10.1002/ps.6583] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 07/31/2021] [Indexed: 05/31/2023]
Abstract
BACKGROUND Control of Zeugodacus cucurbitae, a serious agricultural pest worldwide, often includes or is dependent on the use of spinosad-based insecticides. This is especially the case in Hawaii, where GF-120, a protein bait containing spinosad as the active ingredient, has been in use as a key integrated pest management (IPM) tool against this Tephritid for the last two decades. Here, we report on resistance to spinosad [resistance ratios (RRs) and median lethal concentration (LC50 )] in Hawaii's populations of Z. cucurbitae. RESULTS High resistance was found in populations from three farms on Oahu (RR = 102-303; LC50 = 191-567 mg L-1 ) and in a population from Maui (RR = 8.50; LC50 = 15.9 mg L-1 ). These will be problematic for control given that the most concentrated dilution ratio on the GF-120 label is 96 mg L-1 of spinosad (1 part GF-120 to 1.5 parts water). Background resistance in a naïve wild population from the Island of Hawaii (RR = 2.73; LC50 = 5.1 mg L-1 ) was relatively low compared with a spinosad-susceptible laboratory colony (LC50 = 1.87 mg L-1 ). Resistance in the three Oahu and one Maui populations declined over generations in the absence of spinosad but remained elevated in some cases. Moreover, melon flies collected from one of the Oahu farms 1 year after the cessation of spinosad use revealed high persistence of resistance. CONCLUSION Compared with a 2008 survey of spinosad resistance, our findings indicate a 34-fold increase in resistance on one of the Oahu farms over 9 years. The evolution and persistence of high levels of resistance to spinosad in Z. cucurbitae in Hawaii highlights the need for alternative control tactics, particularly rotation of active ingredients. © 2021 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Ju‐Chun Hsu
- Department of EntomologyNational Taiwan UniversityTaipeiTaiwan
| | - Ming‐Yi Chou
- Agricultural Extension CenterNational Chung Hsing UniversityTaichungTaiwan
| | - Ronald FL Mau
- Department of Plant and Environmental Protection SciencesUniversity of Hawai'iMānoaHIUSA
| | - Colby Maeda
- US Department of Agriculture, Agricultural Research ServiceDaniel K. Inouye US Pacific Basin Agricultural Research CenterHiloHIUSA
| | - Ikkei Shikano
- Department of Plant and Environmental Protection SciencesUniversity of Hawai'iMānoaHIUSA
| | - Nicholas C Manoukis
- US Department of Agriculture, Agricultural Research ServiceDaniel K. Inouye US Pacific Basin Agricultural Research CenterHiloHIUSA
| | - Roger I Vargas
- US Department of Agriculture, Agricultural Research ServiceDaniel K. Inouye US Pacific Basin Agricultural Research CenterHiloHIUSA
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