Transcriptomic analysis of Chaetoceros muelleri in response to different nitrogen concentrations reveals the activation of pathways to enable efficient nitrogen uptake

Nitrogen is the principal nutrient deficiency that increases lipids and carbohydrate content in diatoms but negatively affects biomass production. Marine diatom Chaetoceros muelleri is characterized by lipid and carbohydrate accumulation under low nitrogen concentration without affecting biomass. To elucidate the molecular effects of nitrogen concentrations, we performed an RNA-seq analysis of C. muelleri grown under four nitrogen concentrations (3.53 mM, 1.76 mM, 0.44 mM, and 0.18 mM of NaNO3). This research revealed that changes in global transcription in C. muelleri are differentially expressed by nitrogen concentration. "Energetic metabolism", "Carbohydrate metabolism" and "Lipid metabolism" pathways were identified as the most upregulated by N deficiency. Due to N limitation, alternative pathways to self-supply nitrogen employed by microalgal cells were identified. Additionally, nitrogen limitation decreased chlorophyll content and caused a greater response at the transcriptional level with a higher number of unigenes differentially expressed. By contrast, the highest N concentration (3.53 mM) recorded the lowest number of differentially expressed genes. Amt1, Nrt2, Fad2, Skn7, Wrky19, and Dgat2 genes were evaluated by RT-qPCR. In conclusion, C. muelleri modify their metabolic pathways to optimize nitrogen utilization and minimize nitrogen losses. On the other hand, the assembled transcriptome serves as the basis for metabolic engineering focused on improving the quantity and quality of the diatom for biotechnological applications. However, proteomic and metabolomic analysis is also required to compare gene expression, protein, and metabolite accumulation.

Habitat selection drives diatom community assembly and network complexity in sediment-laden riverine environments

Microbial communities assemble stochastically and deterministically, but how different assembly processes shape diatom community structure across riverine habitats is unclear, especially in sediment-laden environments. In this study, we deciphered the mechanisms of riverine diatom community assembly in the water column and riverbed substrate with varying sediment concentrations. Water and sediment samples were collected from 44 sampling sites along the Yellow River mainstream during two seasons. Diatom communities were characterized based on high-throughput sequencing of the 18S ribosomal RNA genes coupled with multivariate statistical analyses. A total of 198 diatom species were taxonomically assigned, including 182 free-living and particle-attached species and 184 surface-sediment species. Planktonic communities were structurally different from benthic communities, with Cyclotella being dominant mainly in the middle and lower reaches of the river with higher sediment concentrations. Both stochastic and deterministic processes affected diatom community assembly in different habitats. Species dispersal was more important in the water than in the substrate, and this process was strengthened by increased sediment concentration across habitats. Diatom communities exhibited lower network complexity and enhanced antagonistic or competitive interactions between species in response to higher sediment concentrations compared with lower sediment concentrations mainly in the source region of the river. Differences in the species composition and community diversity of planktonic diatoms were closely correlated with the proportion of bare land area, nitrogen nutrients, precipitation, and sediment concentration. In particular, particle-attached diatoms responded sensitively to environmental factors. These findings provide strong evidence for sediment-mediated assembly and interactions of riverine diatom communities.

One-step bioremediation of hypersaline and nutrient-rich food industry process water with a domestic microbial community containing diatom Halamphora coffeaeformis

Proper treatment of hypersaline and nutrient-rich food industry process water (FIPW) is challenging in conventional wastewater plants. Insufficient treatment leads to serious environmental hazards. However, bioremediation of FIPW with an indigenous microbial community can not only recover nutrients but generate biomass of diverse applications. In this study, monoculture of Halamphora coffeaeformis, together with synthetic bacteria isolated from a local wastewater plant, successfully recovered 91% of NH4+-N, 78% of total nitrogen, 95% of total phosphorus as well as 82% of total organic carbon from medium enriched with 10% FIPW. All identified organic acids and amino acids, except oxalic acid, were completely removed after 14 days treatment. A significantly higher biomass concentration (1.74 g L-1) was achieved after 14 days treatment in the medium with 10% FIPW than that in a nutrient-replete lab medium as control. The harvested biomass could be a potential feedstock for high-value biochemicals and fertilizer production, due to fucoxanthin accumulation (3 mg g-1) and a fantastic performance in P assimilation. Metagenomic analysis revealed that bacteria community in the algal system, dominated by Psychrobacter and Halomonas, also contributed to the biomass accumulation and uptake of nutrients. Transcriptomic analysis further disclosed that multiple pathways, involved in translation, folding, sorting and degradation as well as transport and catabolism, were depressed in H. coffeaeformis grown in FIPW-enriched medium, as compared to the control. Collectively, the proposed one-step strategy in this work offers an opportunity to achieve sustainable wastewater management and a way towards circular economy.

Ingestion and adherence of microplastics by estuarine mysid shrimp

Microplastics have been reported to be present in zooplankton, yet questions persist regarding their fate and dynamics within biota. We selected the commercial mysid shrimp, Mesopodopsis orientalis, as the focal zooplankton for this study due to their crucial role in our study area, the Inner Gulf of Thailand in January 2022. We investigated the presence of microplastics in mysid bodies and fecal pellets, examining both attached microplastics on external body parts and those ingested. In addition, we conducted microplastic feeding experiments, exposing mysids to various treatments of microplastics. The results of the field investigation indicate that mysids exhibited an average of 0.12 ± 0.03 microplastic items/mysid from whole-body samples. The shape, type, and color of microplastics found in mysids were similar to those present in seawater, with blue PET microfibers being the most prevalent. Our observations on live mysids revealed that microplastics were acquired through ingestion and adherence to appendages and exoskeletons. Microplastics were observed in mysid's fecal pellets at 0.09 ± 0.03 items/mysid, while microplastics adhering to the mysid's body and appendages were observed at 0.10 ± 0.04 items/mysid. The sizes of microplastics extracted from preserved mysids ranged from 58 μm to 4669 μm, with median of 507 μm. The laboratory experiments revealed that the presence of microalgae enhanced microplastic ingestion in mysids; microplastics incubated with a cyanobacterium, Oscillatoria sp., and diatom Navicula sp. significantly increased the number of microplastic particles ingested by mysids. This study showed that microplastics can be more ingested in mysids, especially when food items are present. Microplastic fate in these animals may involve expulsion into the environment or adherence, potentially facilitating their transfer up the marine food web.

Morphology and phylogeny of Nitzschianandorii sp. nov. (Bacillariophyceae), a new small-celled lanceolate species from a post-mining reservoir

Post-mining reservoirs are distinguished by characteristic environmental conditions where specific diatom communities can be observed. Reservoirs created as a part of the reclamation plan after human mining activities are marked by unique chemical and physical water parameters. In the course of research on the diatoms from Bogdałów reservoir, we examined the taxonomic and morphological diversity of Nitzschia taxa from the section Lanceolatae occurring in a post-mining lignite reservoir. Our study describes a new species of Nitzschia from a post-mining reservoir, Nitzschianandorii Olszyński, Zakrzewski & Żelazna-Wieczorek, sp. nov. Morphometry and morphology analyses of new species were performed with light and scanning electron microscopy. Chloroplast morphology analysis was conducted with differential interference contrast microscopy and confocal laser scanning microscopy. Molecular data from SSU 18S, rbcL and psbC sequences were obtained from cultures of this taxon. Differential diagnosis of Nitzschianandorii Olszyński, Zakrzewski & Żelazna-Wieczorek, sp. nov. with co-occurring taxa: N.lacuum and N.alpinobacillum was performed using morphological traits and nMDS analysis of the valves' morphometry.

Potential cellular targets of platinum in the freshwater microalgae Chlamydomonas reinhardtii and Nitzschia palea revealed by transcriptomics

Platinum group element levels have increased in natural aquatic environments in the last few decades, in particular as a consequence of the use of automobile catalytic converters on a global scale. Concentrations of Pt over tens of μg L-1 have been observed in rivers and effluents. This raises questions regarding its possible impacts on aquatic ecosystems, as Pt natural background concentrations are extremely low to undetectable. Primary producers, such as microalgae, are of great ecological importance, as they are at the base of the food web. The purpose of this work was to better understand the impact of Pt on a cellular level for freshwater unicellular algae. Two species with different characteristics, a green alga C. reinhardtii and a diatom N. palea, were studied. The bioaccumulation of Pt as well as its effect on growth were quantified. Moreover, the induction or repression factors of 16 specific genes were determined and allowed for the determination of possible intracellular effects and pathways of Pt. Both species seemed to be experiencing copper deficiency as suggested by inductions of genes linked to copper transporters. This is an indication that Pt might be internalized through the Cu(I) metabolic pathway. Moreover, Pt could possibly be excreted using an efflux pump. Other highlights include a concentration-dependent negative impact of Pt on mitochondrial metabolism for C. reinhardtii which is not observed for N. palea. These findings allowed for a better understanding of some of the possible impacts of Pt on freshwater primary producers, and also lay the foundations for the investigation of pathways for Pt entry at the base of the aquatic food web.

The tolerance of two marine diatoms to diurnal pH fluctuation under dynamic light condition and ocean acidification scenario

Coastal waters undergo dynamic changes in seawater carbonate chemistry due to natural and anthropogenic factors. Despite this, our current understanding of how coastal phytoplankton respond to fluctuating pH is limited. In the present study, we investigated the physiological responses of two coastal diatoms Thalassiosira pseudonana and Thalassiosira weissflogii to seawater acidification and diurnally fluctuating pH under natural solar irradiance. Seawater acidification did not significantly impact the growth, maximum and effective quantum yield of PSII, and photosynthetic rates of the two species. However, it did increase the maximum relative electron transport rate of T. weissflogii by 11%. Overall, fluctuating pH had neutral or positive effects on both species. It enhanced the light-saturated photosynthetic rate of T. weissflogii by 20% compared to cells grown under seawater acidification condition. Results from the short-term pH exposure experiment revealed that the photosynthetic rates of both species remained unaffected by acute pH changes, indicating their tolerance to varying pH. Nevertheless, it is crucial to consider dynamic pH when predicting changes in primary production in coastal waters, given the interplay of various environmental drivers.

Impacts of climate warming and atmospheric deposition on recent shifts in chironomid communities in two alpine lakes, eastern China

Climate warming and atmospheric deposition are altering alpine lake ecosystems at unprecedented rates, whereas their direct and indirect effects on primary consumer communities are unclear. This study presents sedimentary multi-proxy records including chironomids, diatoms, elements and stable isotopes of carbon and nitrogen in 210Pb-dated cores from two alpine lakes located above the timberline in the Taibai Mountain, eastern China. Before ∼2000 CE, chironomid communities were co-dominated by Heterotrissocladius marcidus-type and Micropsectra atrofasciata-type in the two lakes. Thereafter, Tanytarsus glabrescens-type increased rapidly to be a dominant species. Redundancy analyses (RDAs) revealed that chironomid fauna shifts were significantly correlated with rising diatom concentrations in both lakes, declining Ti content in the upstream lake and δ13C depletion in the downstream lake. Although temperature, precipitation and δ15N were not significant explanatory variables in RDAs, climate warming and atmospheric deposition likely promoted terrestrial and aquatic primary production, indicated by synchronous increases in organic matter contents and diatom concentrations in the two sediment cores. Since diatoms contain essential polyunsaturated fatty acids that are essential for chironomids, rising diatom concentrations can promote food quantity and quality. In addition, increased primary production would create organic substrates for chironomid larvae. Recent shifts in chironomid fauna driven by indirect effects of global warming and atmospheric deposition might be a widespread phenomenon in alpine lakes, probably triggering regime shifts in headwater lake ecosystems.

Two new diatom species of the genus Gomphonemopsis (Bacillariophyceae) from the coast of China and two new combinations for the genus

Two new diatom species belonging to the genus Gomphonemopsis are described, Gomphonemopsisnanasp. nov. and Gomphonemopsisgaoisp. nov. These two species were compared in detail with congeners. Gomphonemopsisnana is distinguished by its high stria density and small size. This species was found so far to be epiphytic only on the eelgrass collected from Qingdao Bay (Yellow Sea). Gomphonemopsisgaoi is characterized by its isopolar valves, simple proximal raphe endings and acutely rounded apices. This taxon was separated from the exoskeleton of marine copepods sampled from the Futian Mangrove Nature Reserve (South China Sea). In addition, two new combinations, Gomphonemopsisoahuensis (Hustedt) Lang Li, Yuhang Li & Changping Chen, comb. nov. and Gomphonemopsisplatypus (Østrup) Lang Li, Yuhang Li & Junxiang Lai, comb. nov. are proposed. This study increases the records and knowledge of Gomphonemopsis along the coast of China.

Mercury species induce metabolic reprogramming in freshwater diatom Cyclotella meneghiniana

Mercury is a hazardous pollutant of global concern. While advances have been made in identifying the detrimental effects caused by Hg species in phytoplankton, knowledge gaps remain regarding the metabolomic perturbations induced by inorganic mercury (Hg(II)) and monomethylmercury (MeHg) in these organisms. Diatoms represent a major phytoplankton group essential in various global biogeochemical cycles. The current study combined targeted metabolomics, bioaccumulation, and physiological response assays to investigate metabolic perturbations in diatom Cyclotella meneghiniana exposed for 2 h to nanomolar concentrations of Hg(II) and MeHg. Our findings highlight that such exposures induce reprogramming of the metabolism of amino acids, nucleotides, fatty acids, carboxylic acids and antioxidants. These alterations were primarily mercury-species dependent. MeHg exposure induced more pronounced reprogramming of the metabolism of diatoms than Hg(II), which led to less pronounced effects on ROS generation, membrane permeability and chlorophyll concentrations. Hg(II) treatments presented distinct physiological responses, with more robust metabolic perturbations at higher exposures. The present study provides first-time insights into the main metabolic alterations in diatom C. meneghiniana during short-term exposure to Hg species, deepening our understanding of the molecular basis of these perturbations.

Mobilization of Plasmids From Bacteria Into Diatoms by Conjugation Technique

Diatoms serve as a source for a variety of compounds with particular biotechnological interest. Therefore, redirecting the flow to a specific pathway requires the elucidation of the gene's specific function. The most commonly used method in diatoms is biolistic transformation, which is a very expensive and time-consuming method. The use of episomes that are maintained as closed circles at a copy number equivalent to native chromosomes has become a useful genetic system for protein expression that avoids multiple insertions, position-specific effects on expression, and potential knockout of non-targeted genes. These episomes can be introduced from bacteria into diatoms via conjugation. Here, we describe a detailed protocol for gene expression that includes 1) the gateway cloning strategy and 2) the conjugation protocol for the mobilization of plasmids from bacteria to diatoms.

Diatom-guided bone healing via a hybrid natural scaffold

Bone tissue engineering (BTE) involves the design of three-dimensional (3D) scaffolds that aim to address current challenges of bone defect healing, such as limited donor availability, disease transmission risks, and the necessity for multiple invasive surgeries. Scaffolds can mimic natural bone structure to accelerate the mechanisms involved in the healing process. Herein, a crosslinked combination of biopolymers, including gelatin (GEL), chitosan (CS), and hyaluronic acid (HA), loaded with diatom (Di) and β-sitosterol (BS), is used to produce GCH-Di-S scaffold by freeze-drying method. The GCH scaffold possesses a uniform structure, is biodegradable and biocompatible, and exhibits high porosity and interconnected pores, all required for effective bone repair. The incorporation of Di within the scaffold contributes to the adjustment of porosity and degradation, as well as effectively enhancing the mechanical property and biomineralization. In vivo studies have confirmed the safety of the scaffold and its potential to stimulate the creation of new bone tissue. This is achieved by providing an osteoconductive platform for cell attachment, prompting calcification, and augmenting the proliferation of osteoblasts, which further contributes to angiogenesis and anti-inflammatory effects of BS.

Mechanisms underlying the alleviated cadmium toxicity in marine diatoms adapted to ocean acidification

Anthropogenic activities have significantly increased the influx of carbon dioxide and metals into the marine environment. Combining ocean acidification (OA) and metal pollution may lead to unforeseen biological and ecological consequences. Several studies have shown that OA reduces cadmium (Cd) toxicity in marine diatoms. Although these studies have shed light on the physiological and transcriptomic responses of diatoms exposed to Cd, many aspects of the mechanisms underlying the reduced metal accumulation in diatoms remain unknown. This study aims to address this unresolved question by comparing Cd subcellular distribution, antioxidant enzyme activity, relative expression of metal transporters, surface potential, surface composition, and transmembrane potential in the diatom Phaeodactylum tricornutum grown under ambient and 1200 µatm pCO2 conditions. Our findings reveal that diatoms grown in acidified seawater exhibit higher surface potential and higher plasma membrane depolarization. These changes and the competing effects of increased H+ concentration result in a blunted response of P. tricornutum to the Cd challenge. Consequently, this study offers a new explanation for mitigating Cd toxicity by marine diatoms adapted to OA.

Impact of polystyrene microplastics on the growth and photosynthetic efficiency of diatom Chaetoceros neogracile

The increasing prevalence of microplastic pollution in aquatic environments has raised concerns about its impact on marine life. Among the different types of microplastics, polystyrene microplastics (PSMPs) are one of the most commonly detected in aquatic systems. Chaetoceros neogracile (diatom) is an essential part of the marine food web and plays a critical role in nutrient cycling. This study aimed to monitor the ecotoxicological impact of PSMPs on diatoms and observe enzymatic interactions through molecular docking simulations. Results showed that diatom growth decreased with increasing concentrations and exposure time to PSMPs, and the lowest photosynthetic efficiency (Fv/Fm) value was observed after 72 and 96 h of exposure to 200 mg L-1 of PSMPs. High concentrations of PSMPs led to a decrease in chlorophyll a content (up to 64.4%) and protein content (up to 35.5%). Molecular docking simulations revealed potential interactions between PSMPs and the extrinsic protein in photosystem II protein of diatoms, suggesting a strong affinity between the two. These findings indicate a detrimental effect of PSMPs on the growth and photosynthetic efficiency of diatoms and highlight the need for further research on the impact of microplastics on marine microbial processes.

Bioaccumulation of Titanium in diatom Cyclotella atomus Hust

Diatomaceous earth or diatomite is a fossil rock deposit of diatoms made up of silica and other minerals. A distinguishing feature of diatoms that placed them in the single class of microalgae Bacillariophyceae, is the frustule, a transparent, hard-shelled cell wall. It's interesting to note that the diatom has specific proteins and enzymes for heavy metal detoxification and can intake and store more heavy metals in its frustule. Consequently, an attempt has been made in this study to determine the bioaccumulation of metals in the frustules of the diatom. Hence, a centric diatom was isolated from the freshwater sample collected from the Adyar River, Chennai, Tamil Nadu. The diameter of the cell was 5-7.5 µm and 20-23 striations with radial arrangement. A single, dark off-center fultoportula and marginal fultoportula on the striae are found in the diatom. Additionally, one rimoportula between two marginal fultoportula distributed on the striae between the costa was also seen. As a result, the isolated diatom was morphologically identified as Cyclotella atomus Hust. Simultaneously, the bioaccumulation study reveals that the Titanium (Ti) was found accumulated in the frustules of the diatom incubated in the Ti-supplemented culture medium based on the scanning electron microscope-energy-dispersive X-ray analysis (SEM-EDAX). Therefore, the biogenic accumulation and fabrication of Titanium frustules in diatom have advantages in enhancing the efficiency of solar cells.

Phycoremediation and valorization of hypersaline pickled mustard wastewater via Chaetoceros muelleri and indigenous bacteria

Hypersaline pickled mustard wastewater (PMW), a typical food wastewater with high nutrient content, was successfully bioremediated via the co-treatment of Chaetoceros muelleri and indigenous bacteria in this study. Chemical oxygen demand, ammonia nitrogen, total nitrogen and total phosphorus in 10 % PMW could be effectively reduced by 82 %, 90 %, 94 % and 96 %, respectively, after 12 days treatment. Oxygen species activities, malondialdehyde content, microalgal biomass, photosynthesis and extracellular polymeric substances were characterized during the treatment to determine the responses of the consortium when exposed to different concentration of PMW. Microbial community analysis demonstrated a significant increase in the relative abundance of Halomonas and Marinobacter in the 10 % PMW after 12 days treatment, which was beneficial for nutrients recycling by the diatoms. Meanwhile, C. muelleri was effective in reducing the relative abundance of potentially pathogenic bacteria Malaciobacter. In conclusion, the work here offers a promising and environmentally friendly approach for hypersaline wastewater treatment.

Isolation of High-Quality Plastids from the Diatom Phaeodactylum tricornutum

Phaeodactylum tricornutum, a model pennate diatom, carries a secondary plastid surrounded by four membranes. Its biological function remains mysterious, supposed to combine features of the primary chloroplast and the endomembrane system. Isolation of high-quality plastid from the diatom enables a more conclusive understanding of the special structure and metabolic pathways in the plastid. Due to the direct continuity between the chloroplast endoplasmic reticulum membrane (cERM) and the outer nuclear envelope together with the integration of cERM into the cellular endoplasmic reticulum (ER) system, the plastid isolation is still challenging. In this study, highly purified P. tricornutum plastids with the four-layered membrane are obtained by Percoll density gradient centrifugation. The isolated plastids are unlikely to contain any residue of nuclear and coatomer compartments, and they might contain a relatively small contamination of mitochondrion and ER debris.

Diatom-derived mesoporous silica nanoparticles loaded with fucoidan for enhanced chemo-photodynamic therapy

Combination therapy merges chemical photodynamic therapy (CPDT) to improve cancer treatment. It synergizes chemotherapy with photodynamic therapy (PDT), using photosensitizers to produce reactive oxygen species (ROS) when exposed to light, effectively killing drug-resistant cancer cells. It is not affected by drug resistance, making it an attractive option for combination with chemotherapy. In this study, the focus was on the design of a combination therapy of chemotherapy and PDT. They synthesized diatomaceous earth mesoporous silica nanoparticles (dMSN) containing lanthanide metal ions in a PDT composition. These nanoparticles can generate ROS under near-infrared light irradiation and have MRI and fluorescence imaging capabilities, confirming their phototherapeutic effect on HCT116 cancer cells at a 200 μg/mL concentration. Fucoidan, derived from brown algae, was used as the chemotherapy component. The fucoidan extracted from Sargassum oligocystum in Pingtung Haikou showed the highest anticancer activity, with cell viability of 57.4 % at 200 μg/mL on HCT116 cancer cells. For combination therapy, fucoidan was loaded into nanoparticles (dMSN-EuGd@fucoidan). Cell viability experiments revealed that at 200 μg/mL, the cell survival rate of dMSN-EuGd@Fucoidan on HCT116 cancer cells was 47.7 %. Combination therapy demonstrated superior anticancer efficacy compared to PDT or chemotherapy alone, successfully synthesizing nanoparticles for combined chemotherapy and photodynamic therapy.

Impact of facemask debris on marine diatoms: Physiology, surface properties, sinking rate, and copepod ingestion

Discarded surgical masks have become a new source of plastic waste in seawater capable of releasing numerous micro and nano plastic fragments. However, little information is available about how this waste impacts the ecological state of marine phytoplankton. Here, we exposed two model marine diatoms (Phaeodactylum tricornutum and Thalassiosira weissflogii) to mask-released debris (MD) that is characterized by various differently-charged functional groups. Although MD could only bind loosely to diatoms, it still inhibited their growth and significantly altered cell surface physicochemical properties. At the nanoscale, MD-exposed cell walls showed enhanced roughness and modulus, besides declined electrical potential, adhesion, and proportion of oxygen-containing compounds. As a result, diatom ingestion by copepods was reduced, and the sinking rate of the carbon pool consisting of MD plus diatoms decreased as well. Our study indicated that MD effects on diatoms have the potential to slow down carbon export from surface seawater to the deep sea. Since oxidation and generation of functional groups are common during the aging process of microplastics (MPs) in nature, the interactions between the diatom cell surface and MD have important environmental significance.

Nuclear Transformation of the Marine Pennate Diatom Nitzschia sp. Strain NIES-4635 by Multi-Pulse Electroporation

Nitzschia is one of the largest genera of diatoms found in a range of aquatic environments, from freshwater to seawater. This genus contains evolutionarily and ecologically unique species, such as those that have lost photosynthetic capacity or those that live symbiotically in dinoflagellates. Several Nitzschia species have been used as indicators of water pollution. Recently, Nitzschia species have attracted considerable attention in the field of biotechnology. In this study, a transformation method for the marine pennate diatom Nitzschia sp. strain NIES-4635, isolated from the coastal Seto Inland Sea, was established. Plasmids containing the promoter/terminator of the fucoxanthin chlorophyll a/c binding protein gene (fcp, or Lhcf) derived from Nitzschia palea were constructed and introduced into cells by multi-pulse electroporation, resulting in 500 μg/mL nourseothricin-resistant transformants with transformation frequencies of up to 365 colonies per 108 cells. In addition, when transformation was performed using a new plasmid containing a promoter derived from a diatom-infecting virus upstream of the green fluorescent protein gene (gfp), 44% of the nourseothricin-resistant clones exhibited GFP fluorescence. The integration of the genes introduced into the genomes of the transformants was confirmed by Southern blotting. The Nitzschia transformation method established in this study will enable the transformation this species, thus allowing the functional analysis of genes from the genus Nitzschia, which are important species for environmental and biotechnological development.

Bioavailable iron concentrations regulate phytoplankton growth and bloom formation in low-nutrient lakes

The growth of phytoplankton in lakes is thought to be primarily controlled by macronutrient concentrations, but the availability of trace metal micronutrients, such as iron (Fe), are increasingly recognised as important regulators of lake primary production. This study evaluates the role of Fe in regulating phytoplankton growth in lakes of different nutrient status in New Zealand. The results of this unique year-long study, combining highly sensitive trace metal concentration analysis of waters and particulates with advanced trace metal bioavailability and speciation modelling, constrains thresholds for bioavailable Fe and colloidal Fe of 0.8 nmol·L-1 and 30 nmol·L-1, respectively, below which phytoplankton growth-limitation occurs. These thresholds specifically control diatom bloom formation and termination in lakes, thereby exerting a strong influence on freshwater carbon sequestration, given the dominance of diatoms in lake bloom assemblages. Importantly, potentially toxic cyanobacteria thrived only after events of bottom water anoxia, when additional dissolved Fe in concentrations ≥4 nmol·L-1 was released into the water column. These new thresholds for bioavailable and colloidal Fe offer the potential to manage micronutrient levels in lakes for the purpose of regulating algal bloom formation and carbon sequestration, while at the same time, suppressing the formation of harmful cyanobacterial blooms.

Mapping harmful microalgal species by eDNA monitoring: A large-scale survey across the southwestern South China Sea

A large-scale sampling was undertaken during a research cruise across the South China Sea in August 2016, covering an area of about 100,000 km2 to investigate the molecular diversity and distributions of micro-eukaryotic protists, with a focus on the potentially harmful microalgal (HAB) species along the east coast of Peninsular Malaysia. Environmental DNAs from 30 stations were extracted and DNA metabarcoding targeting the V4 and V9 markers in the 18S rDNA was performed. Many protistan molecular units, including previously unreported HAB taxa, were discovered for the first time in the water. Our findings also revealed interesting spatial distribution patterns, with a marked signal of compositional turnover between latitudinal regimes of water masses, where dinophytes and diatom compositions were among the most strongly enhanced at the fronts, leading to distinct niches. Our results further confirmed the widespread distribution of HAB species, such as the toxigenic Alexandrium tamiyavaichii and Pseudo-nitzschia species, and the fish-killing Margalefidinium polykrikoides and Karlodinium veneficum. The molecular information obtained from this study provides an updated HAB species inventory and a toolset that could facilitate existing HAB monitoring schemes in the region to better inform management decisions.

Transcriptional responses of the marine diatom Chaetoceros tenuissimus to phosphate deficiency

The planktonic diatom Chaetoceros tenuissimus sometimes forms blooms in coastal surface waters where dissolved inorganic phosphorus (P) is typically deficient. To understand the molecular mechanisms for survival under P-deficient conditions, we compared whole transcripts and metabolites with P-sufficient conditions using stationary growth cells. Under P-deficient conditions, cell numbers and photosynthetic activities decreased as cells entered the stationary growth phase, with downregulation of transcripts related to the Calvin cycle and glycolysis/gluconeogenesis. Therefore, metabolites varied across nutritional conditions. Alkaline phosphatase, phosphodiesterase, phytase, phosphate transporter, and transcription factor genes were drastically upregulated under dissolved inorganic P deficiency. Genes related to phospholipid degradation and nonphospholipid synthesis were also upregulated. These results indicate that C. tenuissimus rearranges its membrane composition from phospholipids to nonphospholipids to conserve phosphate. To endure in P-deficient conditions, C. tenuissimus modifies its gene responses, suggesting a potential survival strategy in nature.

Bubble-free diatoms polymerase chain reaction

Polymerase chain reaction (PCR) in small fluidic systems not only improves speed and sensitivity of deoxyribonucleic acid (DNA) amplification but also achieves high-throughput quantitative analyses. However, air bubble trapping and growth during PCR has been considered as a critical problem since it causes the failure of DNA amplification. Here we report bubble-free diatom PCR by exploiting a hierarchically porous silica structure of single-celled algae. We show that femtoliters of PCR solution can be spontaneously loaded into the diatom interior without air bubble trapping due to the surface hydrophilicity and pore structure of the diatom. We discover that a large pressure gradient between air bubbles and nanopores rapidly removes residual air bubbles through the periodically arrayed nanopores during thermal cycling. We demonstrate the DNA amplification by diatom PCR without air bubble trapping and growth. Finally, we successfully detect DNA fragments of SARS-CoV-2 with as low as 10 copies/μl by devising a microfluidic device integrated with diatoms assembly. We believe that our work can be applied to many PCR applications for innovative molecular diagnostics and provides new opportunities for naturally abundant diatoms to create innovative biomaterials in real-world applications.

Temporal variability of microbiome in the different plankton hosts revealed distinct environmental persistence of Vibrio parahaemolyticus in shrimp farms

Plankton-bacteria interactions may play essential roles in maintaining the persistence of pathogenic Vibrio spp. However, the actual plankton host of the toxigenic Vibrio parahaemolyticus that harbors thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH) remains unclear. To answer this question, we measured the abundance of toxigenic and nontoxigenic Vibrio parahaemolyticus in different types of plankton by most probable number (MPN)-PCR. We next investigated the dynamics of the microbiomes of rearing water, copepods, Chlorella, four predominant diatom genera (Nitzschia, Melosira, Skeletonema and Chaetoceros) and the gut of the shrimp in two recirculated shrimp farming systems from April to September using high-throughput 16 S rRNA amplicon sequencing. The survival of trh-positive and trh-negative V. parahaemolyticus in seawater and different plankton hosts was examined under low temperature and starvation conditions. The results showed that copepods harbored the highest proportion of trh-positive V. parahaemolyticus, followed by diatoms. Chitinous diatoms (CD) harbored a high proportion of Vibrionaceae, of which a high abundance of V. parahaemolyticus was found in summer. In contrast, Vibrio spp. is rarely found in Chlorella and nonchitinous diatoms. Taxon-specific associations were also observed, including a relatively high abundance of Vibrio and Halodesulfovibrio on copepods and covariation of Aeromonas and Bacillus inside the Chlorella. The survival assays showed that, in comparison to trh-negative V. parahaemolyticus, trh-positive V. parahaemolyticus showed better survival in copepods and CD under starvation conditions and maintained high persistence in the above hosts at low temperature. In conclusion, the results herein suggested that chitinous plankton might provide protection for V. parahaemolyticus, especially trh-positive V. parahaemolyticus, and improve their persistence under harsh conditions. Our study provided in-depth insights into the persistence of V. parahaemolyticus in the environment, which would promote targeted disease prevention measures.

Seven Epithemia taxa (Bacillariophyta) from Lake Akan (Japan) and their salinity tolerances

The ecologies (salinity tolerance) of many diatoms are largely unknown, despite their potential to contribute to more detailed paleoenvironmental reconstructions. This study therefore aimed to investigate the relationship between diatom species and salinity. We cultured seven cosmopolitan benthic diatom species obtained from Lake Akan, a freshwater inland lake in Japan: Epithemiaadnata, E.frickei, E.gibba, E.operculata, E.sorex, E. sp. and E.turgida. Each species was cultured at eleven salinities between 0‰ and 50‰. Epithemiaadnata, E.frickei and E.sorex had the highest growth rate at a salinity of 3‰, with no further increase observed above 25‰. However, E.gibba had the highest growth rate at a salinity of 5‰, with no increase at salinities ≥ 30‰. These results suggest that E.adnata, E.frickei, E.gibba, and E.sorex grow in freshwater to brackish-water environments. Epithemiaoperculata and E. sp. proliferated at all salinities, indicating that they can adapt to hypersaline environments. However, E.turgida did not survive in salinities >10‰, making it the species with the narrowest salinity tolerance range. These results provide new knowledge that improves the understanding of the ecology of these species in modern environments and offer insights into paleoenvironmental reconstructions through diatom analysis.

Diatoms pass through the gastrointestinal barrier and lead to false-positive: an animal experiment

The diatom test has been used by forensic pathologist as standard for drowning, but the occurrence of false-positive results (presence of diatoms found in the tissues of subjects who died from causes other than drowning) draws criticism regarding the specificity of the test. Diatoms within food or water can be ingested through the gastrointestinal tract. However, the mechanisms of how the diatoms reach distant organs such as the lung, liver, and kidney have not been studied. In this article, we simulated the process of diatoms entering the gastrointestinal tract using gastric lavage on experimental rabbits. Diatoms are detected in lymph from a lymphatic vessel at the root of the mesentery, portal vein blood, aortic blood, lung, liver, and kidney samples in the gavage group. Of diatoms, 76.24% were the centric diatom, 99.86% of diatoms have a maximum size of less than 50 µm, and most of diatoms concentrate in the lung. Our study provided the evidence supporting the theory that the diatoms could pass through the gastrointestinal barrier and reach the rabbits' other internal organs. The diatoms could reach internal organs through the portal vein and lymphatic vessel at the root of the mesentery. This provides us new insight into our understanding of false-positive diatom test in forensic pathology.

Effects of phosphorus species and zinc stress on growth and physiology of the marine diatom Thalassiosira weissflogii

Human activities, including industrial and agricultural production, as well as domestic sewage discharge, have led to heavy metal pollution and eutrophication in coastal waters. This has caused a deficiency of dissolved inorganic phosphorus (DIP), but an excess dissolved organic phosphorus (DOP) and high concentrations of zinc. However, the impact of high zinc stress and different phosphorus species on primary producers remains unclear. This study examined the impact of different phosphorus species (DIP and DOP) and high zinc stress (1.74 mg L^-1) on the growth and physiology of the marine diatom Thalassiosira weissflogii. The results showed that compared to the low zinc treatment (5 μg L^-1), high zinc stress significantly decreased the net growth of T. weissflogii, but the decline was weaker in the DOP group than in the DIP group. Based on changes in photosynthetic parameters and nutrient concentrations, the study suggests that the growth inhibition of T. weissflogii under high zinc stress was likely due to an increase in cell death caused by zinc toxicity, rather than a decrease in cell growth caused by photosynthesis damage. Nonetheless, T. weissflogii was able to reduce zinc toxicity by antioxidant reactions through enhancing activities of superoxide dismutase and catalase and by cationic complexation through enhancing extracellular polymeric substances, particularly when DOP served as the phosphorus source. Furthermore, DOP had a unique detoxification mechanism by producing marine humic acid, which is conducive to complexing metal cations. These results provide valuable insights into the response of phytoplankton to environmental changes in coastal oceans, particularly the effects of high zinc stress and different phosphorus species on primary producers.

Biomass valorization of agriculture wastewater grown freshwater diatom Nitzschia sp. for metabolites, antibacterial activity, and biofertilizer

The sustainable utilization of agricultural wastewater is a major global challenge. This study evaluated the impact of agricultural fertilizer on the biomass potential of Nitzschia sp. for metabolite production, antibacterial activity, and slow release biofertilizer. Cultivation of Nitzschia sp. in agriculture wastewater (0.5 mg ml^-1) exhibited maximum cell density (12×10⁵ cells ml^-1), protein content (10.0 mg g^-1), and lipid content (14.96%). Carbohydrate and phenol content increases in a dose-dependent manner with 8.27 mg g^-1 and 2.05 mg g^-1 at a concentration of 2 mg ml^-1 respectively. There was a 2.1-fold increment in chrysolaminarin content. Both gram-negative and gram-positive bacteria were susceptible to the antibacterial activity of the biomass. The effects of using diatom biomass as a biofertilizer were evaluated on the growth of periwinkle plants, which showed significant improvements in leaf development, branching at an early stage, flowering, and a marked increase in shoot length. Diatom biorefinery holds immense potential in addressing agriculture wastewater recycling and sustainable generation of high-value compounds.

Ship Hull-Fouling Diatoms on Korean Research Vessels Revealed by Morphological and Molecular Methods, and Their Environmental Implications

Ship biofouling is one of the main vectors for the introduction and global spread of non-indigenous organisms. Diatoms were the early colonizers of ship hulls; however, their community composition on ships is poorly understood. Herein, we investigated the diatom community on the hull samples collected from two Korean research vessels Isabu (IRV) and Onnuri (ORV) on September 2 and November 10, 2021, respectively. IRV showed low cell density (345 cells/cm2) compared to ORV (778 cells/cm2). We morphologically identified more than 15 species of diatoms from the two research vessels (RVs). The microalgae in both RVs were identified as Amphora, Cymbella, Caloneis, Halamphora, Navicula, Nitzschia, and Plagiogramma. Of them, the genus Halamphora was found to be predominant. However, both RVs had a varied dominant species with a significant difference in body size; Halamphora oceanica dominated at IRV, and Halamphora sp. at ORV, respectively. Molecular cloning showed similar results to morphological analysis, in which Halamphora species dominated in both RVs. The hull-attached species were distinct from species found in the water column. These results revealed diatoms communities that are associated with ship hull-fouling at an early stage of biofilm formation. Moreover, ships arriving from different regions could show some variation in species composition on their hull surfaces, with the potential for non-indigenous species introduction.

Domoic acid production by Pseudo-nitzschia australis: Re-evaluating the role of macronutrient limitation on toxigenicity

The toxigenic diatom Pseudo-nitzschia australis (Frenguelli), isolated from the California Current System (CCS), was examined in unialgal laboratory cultures to evaluate domoic acid (DA) production and cellular growth as a response to macronutrient limitation. Toxic blooms of P. australis are common in the coastal waters of eastern boundary upwelling systems (EBUS), including those of the CCS off the west coast of the United States where limitation by macronutrients, specifically silicon as silicic acid [Si(OH)₄], or phosphorus as phosphate [PO₄^3-], has been suggested to increase the production of DA by these diatoms. This study used batch cultures grown under conditions of macronutrient sufficiency and limitation, expected during and after a natural upwelling event, to determine whether PO₄^3- or Si(OH)₄ deficiency enhances the production of DA and the expected risk of DA toxicity in natural coastal ecosystems. These controlled lab studies demonstrate that despite increases in cell-specific DA concentrations found during the nutrient-limited stationary phase, DA production rates did not increase due to either PO₄^3- or Si(OH)₄ limitation, and total DA production rates were statistically greater during the nutrient-replete, exponential growth phase compared to the nutrient-limited, stationary phase. In addition, the relative contribution of particulate DA (pDA) and dissolved DA (dDA) varied markedly with growth phase, where the contribution of pDA to total DA (pDA + dDA) declined from an average of 70% under P- and Si-replete conditions to 49% under P-limited conditions and 39% under Si-limited conditions. These laboratory results demonstrate that macronutrient sufficiency does not regulate the biosynthetic production of DA by this strain of P. australis. This finding, together with a comparative analysis of the various equations employed to estimate DA production, suggests that the current paradigm of increased toxigenicity due to macronutrient limitation be carefully re-examined, particularly when attempting to forecast the toxic threat of DA to coastal ecosystems as a function of macronutrient availability.

Transcriptomic and metabolomic analyses revealed regulation mechanism of mixotrophic Cylindrotheca sp. glycerol utilization and biomass promotion

BACKGROUND

Diatoms have been viewed as ideal cell factories for production of some high-value bioactive metabolites, such as fucoxanthin, but their applications are restrained by limited biomass yield. Mixotrophy, by using both CO₂ and organic carbon source, is believed effective to crack the bottleneck of biomass accumulation and achieve a sustainable bioproduct supply.

RESULTS

Glycerol, among tested carbon sources, was proved as the sole that could significantly promote growth of Cylindrotheca sp. with illumination, a so-called growth pattern, mixotrophy. Biomass and fucoxanthin yields of Cylindrotheca sp., grown in medium with glycerol (2 g L^-1), was increased by 52% and 29%, respectively, as compared to the autotrophic culture (control) without compromise in photosynthetic performance. As Cylindrotheca sp. was unable to use glycerol without light, a time-series transcriptomic analysis was carried out to elucidate the light regulation on glycerol utilization. Among the genes participating in glycerol utilization, GPDH1, TIM1 and GAPDH1, showed the highest dependence on light. Their expressions decreased dramatically when the alga was transferred from light into darkness. Despite the reduced glycerol uptake in the dark, expressions of genes associating with pyrimidine metabolism and DNA replication were upregulated when Cylindrotheca sp. was cultured mixotrophically. Comparative transcriptomic and metabolomic analyses revealed amino acids and aminoacyl-tRNA metabolisms were enhanced at different timepoints of diurnal cycles in mixotrophic Cylindrotheca sp., as compared to the control.

CONCLUSIONS

Conclusively, this study not only provides an alternative for large-scale cultivation of Cylindrotheca, but also pinpoints the limiting enzymes subject to further metabolic manipulation. Most importantly, the novel insights in this study should aid to understand the mechanism of biomass promotion in mixotrophic Cylindrotheca sp.

Decreasing O2 availability reduces cellular protein contents in a marine diatom

Anthropogenic activities and climate change are exacerbating marine deoxygenation. Apart from aerobic organisms, reduced O₂ also affects photoautotrophic organisms in the ocean. This is because without available O₂, these O₂ producers cannot maintain their mitochondrial respiration, especially under dim-light or dark conditions, which may disrupt the metabolism of macromolecules including proteins. We used growth rate, particle organic nitrogen and protein analyses, proteomics, and transcriptomics to determine cellular nitrogen metabolism of the diatom Thalassiosira pseudonana grown under three O₂ levels in a range of light intensities at nutrient-rich status. The ratio of protein nitrogen to total nitrogen under ambient O₂ level among different light intensities was about 0.54-0.83. At the lowest light intensity, decreased O₂ had a stimulatory effect on protein content. When light intensity increased to moderate and high or inhibitory levels, decreased O₂ reduced the protein content, with maximum values of 56 % at low O₂ and 60 % at hypoxia, respectively. In addition, cells growing under low O₂ or hypoxic status exhibited a decreased rate of nitrogen assimilation associated with decreased protein content, which was associated with downregulated expression of genes related to nitrate transform and protein synthesis and upregulated expression of genes related to protein degradation. Our results suggest that decreased O₂ reduces the protein content of phytoplankton cells, which might degrade grazer nutrition and thus affect marine food chains under the scenario of increasingly deoxygenated/hypoxic waters in future.

Stramenopile-type Lipid Droplet Protein Functions as a Lipid Droplet Scaffold Protein in the Marine Diatom Phaeodactylum tricornutum

Oleaginous microalgae gain great attention as feedstock for biofuels because of their substantial accumulation capacity of neutral lipids in the cytosolic compartment called lipid droplet (LD). Understanding the regulation mechanism of neutral lipid accumulation and degradation, which is mediated by LD-associated proteins, is an important issue in improving lipid productivity. However, LD-associated proteins vary among species and wait to be characterized in many microalgae. Stramenopile-type lipid droplet protein (StLDP) was previously identified as a primary LD protein in the marine diatom Phaeodactylum tricornutum. We produced a knockout mutant of StLDP by CRISPR/Cas9 genome editing. Also, we tried to complement this mutant by expressing recognition site-modified StLDP (RSM-StLDP) which is designed to avoid an attack by Cas9 nuclease expressing in the mutant. The RSM-StLDP:EGFP was localized to both LDs and the outer chloroplast-endoplasmic reticulum. Decrease of LD number per cell, increase of LD size, and no alteration of neutral lipid content in the mutant under nitrogen deficiency clearly indicate that StLDP acts as an LD scaffold protein. The number of LD per cell increased in the complemented strain compared to wild-type cells. The LD morphology in the mutant is probably over-rescued in the complemented strain by the strong function of the nitrate reductase promoter, which is also supported by high neutral lipid content in the complemented strain. The growth of stldp mutant showed a long lag phase relative to wild-type cells, suggesting that the low surface-to-volume ratio of fused LD decreased the efficiency of LD hydrolysis during the initial growth phase.

Temperature sensitivity of carbon concentrating mechanisms in the diatom Phaeodactylum tricornutum

Marine diatoms are key primary producers across diverse habitats in the global ocean. Diatoms rely on a biophysical carbon concentrating mechanism (CCM) to supply high concentrations of CO₂ around their carboxylating enzyme, RuBisCO. The necessity and energetic cost of the CCM are likely to be highly sensitive to temperature, as temperature impacts CO₂ concentration, diffusivity, and the kinetics of CCM components. Here, we used membrane inlet mass spectrometry (MIMS) and modeling to capture temperature regulation of the CCM in the diatom Phaeodactylum tricornutum (Pt). We found that enhanced carbon fixation rates by Pt at elevated temperatures were accompanied by increased CCM activity capable of maintaining RuBisCO close to CO₂ saturation but that the mechanism varied. At 10 and 18 °C, diffusion of CO₂ into the cell, driven by Pt's 'chloroplast pump' was the major inorganic carbon source. However, at 18 °C, upregulation of the chloroplast pump enhanced (while retaining the proportion of) both diffusive CO₂ and active HCO₃^- uptake into the cytosol, and significantly increased chloroplast HCO₃^- concentrations. In contrast, at 25 °C, compared to 18 °C, the chloroplast pump had only a slight increase in activity. While diffusive uptake of CO₂ into the cell remained constant, active HCO₃^- uptake across the cell membrane increased resulting in Pt depending equally on both CO₂ and HCO₃^- as inorganic carbon sources. Despite changes in the CCM, the overall rate of active carbon transport remained double that of carbon fixation across all temperatures tested. The implication of the energetic cost of the Pt CCM in response to increasing temperatures was discussed.

Physiological responses of Humboldt current system diatoms to Fe and Cu co-limitation

Diatoms account for ∼20% of global primary production, often limited by the availability of Fe and other trace nutrients such as Cu. The present study examined the role of both metals in the physiology of two diatoms isolated from the Humboldt Currents System, the centric Chaetoceros c.f. dicipiens and the pennate Nitzschia c.f. draveillensis. Under Fe limitation, a decrease in specific growth rates and sizes of both species was observed, especially in Chaetoceros. However, regarding different photosynthetic parameters, Nitzschia was more impacted. The increase in Cu concentrations improved the physiology of both diatoms, mostly of Chaetoceros. When grown in mixed cultures and under co-limiting conditions, both species remained competive due to morphological advantages (i.e., lower cell size). These results may suggest that the increase of Cu under Fe limitation benefited C. c.f. dicipiens over N. c.f. draveillensis.

Microplastics trigger the Matthew effect on nitrogen assimilation in marine diatoms at an environmentally relevant concentration

Microplastics (MPs, diameter <5 mm) are widely distributed on Earth, especially in the oceans. Diatoms account for ∼40% of marine primary productivity and affect the global biogeochemical cycles of macroelements. However, the effects of MPs on marine nitrogen cycling remain poorly understood, particularly comparisons between nitrogen-replete and nitrogen-limited conditions. We found that MPs trigger the Matthew effect on nitrogen assimilation in diatoms, where MPs inhibited nitrogen assimilation under nitrogen-limited conditions while enhancing nitrogen metabolism under nitrogen-replete conditions in Phaeodactylum tricornutum. Nitrate reductase (NR) and nitrite reductase (NIR) are upregulated, but nitrate transporter (NRT) and glutamine synthetase (GS) are downregulated by MPs under nitrogen-limited conditions. In contrast, NR, NIR, and GS are all upregulated by MPs under nitrogen-replete conditions. MPs accelerate nitrogen anabolic processes with an increase in the accumulation of carbohydrates by 80.7 ± 7.9% and enhance the activities of key nitrogen-metabolizing enzymes (8.20-44.90%) under nitrogen-replete conditions. In contrast, the abundance of carbohydrates decreases by 22.0-34.4%, and NRT activity is inhibited by 79.0-86.5% in nitrogen-limited algae exposed to MPs. Metabolomic and transcriptomic analyses were performed to further explore the molecular mechanisms of reprogrammed nitrogen assimilation, including carbon metabolism, nitrogen transport and ammonia assimilation. The aforementioned spatial redistribution (e.g., the Matthew effect between nitrogen-replete and -limited conditions) of nitrogen assimilation highlights the potential risks of MP contamination in the ocean.

Warming and microplastic pollution shape the carbon and nitrogen cycles of algae

Oceans absorb most excess heat from anthropogenic activities, leading to ocean warming. Moreover, microplastic pollution from anthropogenic activities is serious in marine environments and is accessible to various organisms. However, the combined effects of environmentally realistic ocean warming and microplastic pollution (OW+MP) on dominant marine species phytoplankton and related biochemical cycles are unclear. We investigated the combined effects on the dominant genera of diatoms (Chaetoceros gracilis, C. gracilis) over 100 generations. As a biological adjustment strategy, the growth rates of C. gracilis were nonsignificantly changed by OW+MP, body size decreased, and the chlorophyll a (Chl a) content and photosynthetic efficiency significantly decreased by 32.5% and 10.86%, respectively. The OW+MP condition inhibited carbon and nitrogen assimilation and sequestration capacity and allocated carbon into flexible forms of carbohydrates instead of proteins. Furthermore, the decrease in Si:C and Si:N ratios affected carbon transport to both the mesopelagic layer and deep ocean. Integrated transcriptomics and metabolomics showed that OW+MP disturbed ribosome and nitrogen metabolism. Given the rising concurrence of warming and MP pollution, the changes in metabolism suggest that the covariation in carbon, nitrogen and silicon biochemical cycles and the hidden influence on biodiversity and food web changes in the ocean should be reconsidered.

Conservation of triplet-triplet energy transfer photoprotective pathways in fucoxanthin chlorophyll-binding proteins across algal lineages

Detailed information on the photo-generated triplet states of diatom and haptophyte Fucoxanthin Chlorophyll-binding Proteins (FCPs and E-FCPs, respectively) have been obtained from a combined spectroscopic investigation involving Transient Absorption and Time-Resolved Electron Paramagnetic Resonance. Pennate diatom Phaeodactylum tricornutum FCP shows identical photoprotective Triplet-Triplet Energy Transfer (TTET) pathways to the previously investigated centric diatom Cyclotella meneghiniana FCP, with the same two chlorophyll a-fucoxanthin pairs that involve the fucoxanthins in sites Fx301 and Fx302 contributing to TTET in both diatom groups. In the case of the haptophyte Emilianina huxleyi E-FCP, only one of the two chlorophyll a-fucoxanthins pairs observed in diatoms, the one involving chlorophyll a409 and Fx301, has been shown to be active in TTET. Furthermore, despite the marked change in the pigment content of E-FCP with growth light intensity, the TTET pathway is not affected. Thus, our comparative investigation of FCPs revealed a photoprotective TTET pathway shared within these classes involving the fucoxanthin in site Fx301, a site exposed to the exterior of the antenna monomer that has no equivalent in Light-Harvesting Complexes from the green lineage.

Light stress induced DMS(P) production in Skeletonema costatum: An experimental approach and field observation

Dimethylsulphide is a dominant biogenic sulphur anti-greenhouse gas produced by marine phytoplankton. A non-axenic culture of Skeletonema costatum was studied to comprehend the effects of different growth stages and light stress on DMSP/DMS production. The intracellular DMSP concentration increased during late exponential to mid-stationary phase and attained a maximum (0.59 pg S cell^-1) during the stationary phase, indicating more contribution from actively dividing smaller cells. Likewise, exposure to first light after a 12-hour dark phase caused stress, invariably leading to elevated levels of DMS (~9 fold). These observations were upheld by additional laboratory and field experiments, and a field time-series observation, which recorded higher DMS concentrations during exposure to first light after a dark cycle and during early mornings, respectively. While our study depicts the variable DMSP and DMS concentrations during different growth stages of S. costatum, it gives new information on the effect of light stress on DMS production.

Diatom and pollen atlas dataset from the Northern Gulf of Mexico, USA

Diatom and pollen references such as atlases and identification keys are remarkably rare from the Gulf Coast region of the United States. This dataset describes modern and fossil diatom and pollen from Galveston Bay, Texas to Cedar Keys Florida, USA. An illustrated and descriptive atlas of diatom and pollen was compiled from original data to facilitate the identification of microfossil in sediments. For diatom atlas, we include light micrographs and detailed descriptions of a total of 32 diatom species, including 9 marine diatom species, 18 estuarine diatom species, and 5 freshwater diatom species. For pollen atlas, we include light micrographs and descriptions of a total of 28 pollen and non-pollen palynomorphs, including 3 mangrove taxa, 12 upland (tree and shrub) taxa, and 10 herbaceous taxa. The diatom atlas is referenced from LSU Global Change and Coastal Paleoecology Laboratory's light micrographs collection. The pollen and diatom datasets are associated with research articles by Yao et al. [1,2].

Preliminary assessment of microbial mats in seawater metal remediation

Microbial mats have a special role in the removal of metals in marine environment. This study aimed to experimentally determine the efficiency of Cr removal from seawater by microbial mats. The effect of Cr on the microphytobenthic community and the influence of an aerated condition on the removal of metal and microorganisms were also considered. Hence, microbial mat samples were subdivided in 4 groups: submerged in Cr (chromium 2 mg/L without aeration), Cr + O₂ (chromium 2 mg/L with aeration), SW + O₂ (filtered seawater with aeration), and a control: SW (filtered seawater with neither chromium nor aeration). Water and microbial mat subsamples were used to determine Cr concentrations, organic matter content, granulometry, physicochemical parameters, chlorophyll a, phaeopigments, and quantitative analysis of the microphytobenthic community. Cr removal efficiency from seawater was 95% for the Cr treatment and 99% for the Cr + O₂ treatment. The abundance of cyanobacteria tended to decrease between the initial and final days of the assay, whereas the opposite trend was observed for diatoms. Two aspects are worth noting in the paper: microbial mats efficiently removed Cr from seawater at a concentration of 2 mg Cr/L and the removal of Cr by microbial mats was more efficient with water aeration.

Ecological distribution of modern diatom in peatlands in the northern Greater Khingan Mountains and its environmental implications

Relationships between diatom assemblages and environmental variables in peatlands of the northern Greater Khingan Mountains are helpful for understanding the indicative significance of diatoms to environment changes, and potentially provide a reference for environmental monitoring and paleoenvironment reconstruction in the edge of monsoon region. In this study, we analyzed modern diatom assemblages and their relationships with environment factors in 30 surface samples from shrubby-herbaceous and herbaceous peatlands based on ordination analysis. Benthic and epiphytic Pennatae diatoms are mainly ecological types, whereas planktonic Centricae diatoms are relatively fewer. The most diverse genera are Pinnularia and Eunotia. Eunotia paludosa and Achnanthidium minutissimum dominated in shrubby-herbaceous peatlands, while Navicula minima and Fragilaria capucina dominated in herbaceous peatlands. The diatom community structures are different in different vegetation types and the diatom species diversity in herbaceous peatlands is higher than that in shrubby-herbaceous peatlands. COD_Mn and pH are the most important environmental factors affecting diatom species composition and diversity. Eunotia bilunaris, Eunotia mucophila, and Eunotia paludosa can be used as indicators of acidic water environments. Caloneis silicula, Fragilaria capucina, Hantzschia amphioxys, and Navicula radiosa can be applied to indicate the weak alkaline conditions. Eunotia bilunaris and Eunotia paludosa can indicate low conductivity, while Sellaphora pupula indicates the medium-high conductivity. Fragilaria capucina and Navicula radiosa can indicate oligotrophic habitats.

Long-term phytoplankton dynamics in the Zeeschelde estuary (Belgium) are driven by the interactive effects of de-eutrophication, altered hydrodynamics and extreme weather events

We studied how changing human impacts affected phytoplankton dynamics in the freshwater and brackish tidal reaches of the Zeeschelde estuary (Belgium) between 2002 and 2018. Until the early 2000s, the Zeeschelde was heavily polluted due to high wastewater discharges. By 2008, water quality had improved, resulting in lower nutrient concentrations and higher oxygen levels. Since 2009, however, increased dredging activities resulted in altered hydrodynamics and increased suspended sediment concentration. The combined effects of these environmental changes were reflected in three marked transitions in phytoplankton community composition. Assemblages were dominated by Thalassiosirales and green algae (especially Scenedesmaceae) until 2003. The period 2003-2011 was characterized by the wax and wane of the centric diatoms Actinocyclus and Aulacoseira, while in the period 2012-2018 Thalassiosirales and Cyanobacteria became dominant, the latter mainly imported from the tributaries. Phytoplankton biomass increased sharply in 2003, after which there was a gradual decline until 2018. By 2018, the timing of the growing season had advanced with about one month compared to the start of the study, probably as a consequence of climate warming and intensified zooplankton grazing pressure. Our study shows that de-eutrophication (during the 2000s) and morphological interventions in the estuary (in the 2010s) were dominant drivers of phytoplankton dynamics but that the main shifts in community composition were triggered by extreme weather events, suggesting significant resistance of autochthonous communities to gradual changes in the environment.

Immobilization of metal(loid)s from acid mine drainage by biological soil crusts through biomineralization

Acid mine drainage is harmful to the environment. Bioremediation based on biological soil crusts (BSCs) can be used as a new method to alleviate metal pollution in acid mine drainage. In this study, we found that BSCs can survive in a strongly acidic environment (pH = 3.28) and have a high metal(loid)s accumulation ability. The algae of genera Fragilaria, Klebsormidium, Cymbella, Melosira, Microcystacea, and Planctonema a're the main components of BSCs. These organisms in the BSCs regulated fatty acids and produced acid-resistant enzymes. The bioconcentration factors for As, Cd, Pb, Zn, and Cu were as high as 16,000, 200, 50, 26, and 400, respectively. The concentration of As and Cd in acid mine drainage decreased from 7.1 μg and 350 μg/L to 1.9 μg and 110 μg/L, respectively. In total, 56% of As, 73% of Cd, 88% of Pb, 85% of Zn, and 92% of Cu were present in BSCs as residual or mineral-bound forms. The XRD results (e.g., quarartz and phyllosilicates), SEM results (e.g., phylosilicates and diatom shells) and correlation results show that these metal(loid)s are immobilized by Cymbella (diatoms) during the deposition of silica in the acidic environment. Furthermore, adsorption and co-precipitation are other ways that metal(loid)s could have been bound. These findings provide new insights into the removal of metals (loid) in acidic water.

How do multidimensional traits of dominant diatom Aulacoseira respond to abiotic and biotic factors in a river delta system?

Trait-based approaches are being increasingly applied in ecology, and the influence of individual-level trait variation on communities and species has been demonstrated. However, the responses of individual trait variation to environmental changes remain to be explored. To examine the indicating functions of multidimensional traits, individual-level measurements of the dominant diatom genus Aulacoseira Thwaites in the Pearl River Delta were performed, and corresponding responses of three trait indices (trait richness, trait evenness, and trait dispersion) to abiotic and biotic factors were examined. Our results indicated that the three individual trait diversity indices were regulated by different factors. Trait richness was only significantly affected by abiotic factors (temperature), while trait evenness and trait dispersion were regulated by both abiotic and biotic factors. In addition, the direct influence of abiotic factors was more significant than that of biotic factors, implying that the multidimensional trait variation of Aulacoseira was more responsive to environmental changes than to interspecific interactions. Therefore, the multidimensional trait variation of Aulacoseira could be used as an effective indicator to track environmental changes. Our study elucidated the mechanisms relating individual-level trait variation to phytoplankton community dynamics; this could improve our ability to forecast changes in ecosystem properties across environmental gradients.

Regulation and integration of membrane transport in marine diatoms

Diatoms represent one of the most successful groups of marine phytoplankton and are major contributors to ocean biogeochemical cycling. They have colonized marine, freshwater and ice environments and inhabit all regions of the World's oceans, from poles to tropics. Their success is underpinned by a remarkable ability to regulate their growth and metabolism during nutrient limitation and to respond rapidly when nutrients are available. This requires precise regulation of membrane transport and nutrient acquisition mechanisms, integration of nutrient sensing mechanisms and coordination of different transport pathways. This review outlines transport mechanisms involved in acquisition of key nutrients (N, C, P, Si, Fe) by marine diatoms, illustrating their complexity, sophistication and multiple levels of control.

Effects of phosphate on the toxicity and bioaccumulation of arsenate in marine diatom Skeletonema costatum

The effects of nutrient phosphate (P) at environmentally relevant levels on the toxicity of arsenic (As) in marine microalgae have been rarely known. In the present study, we explored the toxicity and bioaccumulation of As in a globally distributed diatom species Skeletonema costatum at different ambient P concentrations. The results showed that As toxicity was suppressed at elevated P concentrations. Intracellular As content ([As]_intra) and the molar ratio of intracellular As to P ([As:P]) were negatively correlated with the ambient P concentrations. The trends of As bioaccumulation were substantially different between the relatively low (0, 0.5 and 1.5 μM) and high P concentrations (7.5 and 37.5 μM). Both [As]_intra and [As:P] suggested that As bioaccumulation was a better factor to explain the As toxicity comparing to the ambient As concentration. The 4 h As uptake kinetics at different P concentrations followed Michaelis-Menten kinetic pattern. The maximum uptake rates (V_max) decreased with the increase in P concentrations, and the half-saturation constants (K_d) remained constant except for that at extremely high P concentration (37.5 μM-P), suggesting the depression of P on As uptake was mainly due to the non-competitive effect. Overall, these results demonstrate that the P concentration in seawater is an important factor affecting As toxicity and bioaccumulation in the marine diatom. This study therefore helps us better understand the effects of eutrophication on the toxicity and biogeochemistry of As in the marine environment.

Antimicrobial efficacy of self-locomotive manganese oxide nanozyme-doped diatom microbubbler on orthodontic brackets in vitro

BACKGROUND

Orthodontic brackets provide a favorable environment for Streptococcus mutans biofilm formation, increasing the risk of white spots and dental caries. Manganese oxide (MnO₂) nanozyme-doped diatom microbubbler (DM) is a recently developed material for biofilm removal. DM can generate oxygen by catalase-mimicking activity in Hydrogen peroxide (H₂O₂) solution and move with ejecting oxygen microbubbles to produce a mechanical self-cleansing effect. This study aimed to evaluate the feasibility of DM as a novel bracket cleaner.

METHODS

DM was prepared according to the protocol and analyzed using a scanning electron microscope (SEM). We treated S. mutans biofilms grown over bracket with phosphate-buffered saline (PBS group), 0.12% chlorhexidine (CHX group), 3% H₂O₂ (H₂O₂ group), and co-treatment with 3 mg/mL of DM and 3% H₂O₂ (DM group). The biofilm removal effect was analyzed using crystal violet assay, and the results were observed using SEM. The viability of S. mutans in remaining biofilms was evaluated using confocal laser scanning microscopy (CLSM). Finally, we examined the effect of all materials on mature multispecies biofilms formed on debonded brackets.

RESULTS

Crystal violet assay results revealed that the CHX group removed more biofilms than the control group, and the DM group removed biofilms more effectively than the CHX group (p < 0.0001). SEM and CLSM images showed that CHX killed S. mutans but failed to remove most biofilms on brackets. However, DM effectively removed biofilms and mature multispecies biofilms on debonded brackets (p < 0.0001).

CONCLUSIONS

Co-treatment with DM and H₂O₂ is effective in removing biofilms on orthodontic brackets compared to conventional antibacterial agents.

Putative biosynthesis mechanism of the neurotoxin β-N-methylamino-L-alanine in marine diatoms based on a transcriptomics approach

The neurotoxin β-N-methylamino-L-alanine (BMAA) has been presumed as an environmental cause of human neurodegenerative disorders, such as Alzheimer's disease. Marine diatoms Thalassiosira minima are demonstrated here to produce BMAA-containing proteins in axenic culture while the isomer diaminobutyric acid was bacterially produced. In the co-culture with Cyanobacterium aponinum, diatom growth was inhibited but the biosynthesis of BMAA-containing proteins was stimulated up to seven times higher than that of the control group by cell-cell interactions. The stimulation effect was not caused by the cyanobacterial filtrate. Nitrogen deprivation also doubled the BMAA content of T. minima cells. Transcriptome analysis of the diatom in mixed culture revealed that pathways involved in T. minima metabolism and cellular functions were mainly influenced, including KEGG pathways valine and leucine/isoleucine degradation, endocytosis, pantothenate and CoA biosynthesis, and SNARE interactions in vesicular transport. Based on the expression changes of genes related to protein biosynthesis, it was hypothesized that ubiquitination and autophagy suppression, and limited COPII vesicles transport accuracy and efficiency were responsible for biosynthesis of BMAA-containing proteins in T. minima. This study represents a first application of transcriptomics to investigate the biological processes associated with BMAA biosynthesis in diatoms.