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Belen MA, Caliskan A, Koziel S, Pietrenko-Dabrowska A, Mahouti P. Optimal design of transmitarray antennas via low-cost surrogate modelling. Sci Rep 2023; 13:15044. [PMID: 37699963 PMCID: PMC10497519 DOI: 10.1038/s41598-023-42134-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 09/05/2023] [Indexed: 09/14/2023] Open
Abstract
Over the recent years, reflectarrays and transmitarrays have been drawing a considerable attention due to their attractive features, including a possibility of realizing high gain and pencil-like radiation patterns without the employment of complex feeding networks. Among the two, transmitarrays seem to be superior over reflectarrays in terms of achieving high radiation efficiency without the feed blockage. Notwithstanding, the design process of transmitarrays is more intricate due to the necessity of manipulating both the transmission phase and magnitude of its unit elements. For reliability, the design process has to be conducted at the level of full-wave electromagnetic models, which makes direct optimization prohibitive. The most widely used workaround is to employ surrogate modeling techniques to construct fast representations of the unit elements, yet the initial model setup cost is typically high and includes acquisition of thousands of training data points. In this paper, we propose a novel approach to cost-efficient design of transmitarrays. It is based on artificial-intelligence-enabled data-driven surrogates, which can be constructed using only a few hundreds of training data samples, while exhibiting the predictive power sufficient for reliable design. Our methodology is demonstrated by re-using the presented surrogate for the design of high-performance transmitarrays operating at various frequency ranges of 8-14 GHz, 22-28 GHz, and 28-36 GHz.
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Basak J, Piotrzkowska D, Kucharska-Lusina A, Majsterek I. Association between the Cytosine Hydroxymethylation and the Expression of microRNA in Multiple Sclerosis in Polish Population. Int J Mol Sci 2023; 24:13923. [PMID: 37762229 PMCID: PMC10531266 DOI: 10.3390/ijms241813923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 09/05/2023] [Accepted: 09/07/2023] [Indexed: 09/29/2023] Open
Abstract
Multiple sclerosis is a chronic demyelinating disorder with an unclear etiology. A key role is thought to be played by Th17 cells and microRNAs associated with Th17, such as miR-155, miR-326 and miR-223. The present study compared the methylation and hydroxymethylation levels of CpG sites within promoters of these microRNA between MS patients and controls using PBMCs and analyzed their relationship with microRNA expression. Significant intergroup differences were found between the levels of 5-hmC within the CpG-1 miR-155 promoter and CpG within the miR-326 promoter; in addition, miR-155-5p and miR-223-3p expression was elevated in MS patients. Correlation analysis showed a positive relationship between the level of 5-hmC of CpG-2 in the miR-223 promoter and miR-223-3p level. As it is possible to pharmacologically modulate the level of epigenetic modifications, our findings cast light on the etiology of MS and support the development of more effective therapies.
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Koziel S, Haq T. Computationally-efficient statistical design and yield optimization of resonator-based notch filters using feature-based surrogates. Sci Rep 2023; 13:14823. [PMID: 37684301 PMCID: PMC10491762 DOI: 10.1038/s41598-023-42056-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 09/05/2023] [Indexed: 09/10/2023] Open
Abstract
Modern microwave devices are designed to fulfill stringent requirements pertaining to electrical performance, which requires, among others, a meticulous tuning of their geometry parameters. When moving up in frequency, physical dimensions of passive microwave circuits become smaller, making the system performance increasingly susceptible to manufacturing tolerances. In particular, inherent inaccuracy of fabrication processes affect the fundamental operating parameters, such as center frequency or bandwidth, which is especially troublesome for narrow-band structures, including notch filters. The ability to quantify the effects of tolerances, and-even more-to account for these in the design process, are instrumental in making the designs more reliable, and to increase the likelihood that adequate operation is ensured despite manufacturing errors. This paper proposes a simple yet computationally efficient and reliable procedure for statistical analysis and yield optimization of resonator-based notch filters. Our methodology involves feature-based surrogate models that can be established using a handful of training data points, and employed for rapid evaluation of the circuit fabrication yield. Furthermore, a yield optimization procedure is developed, which iteratively sets up a sequence of feature-based models, constructed within local domains relocated along the optimization path, and uses them as predictors to find a robust (maximum yield) design at a low computational cost. The presented approach has been demonstrated using two complementary split ring resonator (CSRR)-based notch filters. The cost of statistical design is about a hundred of EM simulations of the respective filter, with yield evaluation reliability corroborated through EM-based Monte Carlo analysis.
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Kotlewska I, Panek B, Nowicka A, Asanowicz D. Posterior theta activity reveals an early signal of self-face recognition. Sci Rep 2023; 13:13823. [PMID: 37620563 PMCID: PMC10449829 DOI: 10.1038/s41598-023-41071-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 08/21/2023] [Indexed: 08/26/2023] Open
Abstract
Self-related visual information, especially one's own face and name, are processed in a specific, prioritized way. However, the spatio-temporal brain dynamics of self-prioritization have remained elusive. Moreover, it has been unclear whether this prioritization is an effect of enhancement and amplification, or rather a facilitating automatization of processing self-referential information. In this EEG study, 25 married women (who changed their surnames after marriage, so that their past and present surnames could be used as stimuli) performed a detection task with faces and names from five categories: self, self from the past, friend, famous, and unknown person. The aim was to determine the temporal and spatial characteristics of early electrophysiological markers of self-referential processing. We report results of event-related component (ERP) and time-frequency analyses. In the ERPs, the earliest self-relevance effect was displayed only 300 ms after stimulus onset in the midfrontal N2, and later in the parietal P3b, independently of the stimulus type. No self-relevance effect was found on the N170 component. However, local theta power at the occipito-temporal (visual) areas and inter-regional theta phase coherence between the visual and midfrontal areas showed that self-relevance differentiation of faces began already about 100-300 ms after stimulus onset. No such early effects were found for names. The results are discussed in terms of the time-course, functional localization, stimulus-specificity, and automatization of self-prioritization.
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Zelent M, Moalic M, Mruczkiewicz M, Li X, Zhou Y, Krawczyk M. Stabilization and racetrack application of asymmetric Néel skyrmions in hybrid nanostructures. Sci Rep 2023; 13:13572. [PMID: 37604926 PMCID: PMC10442414 DOI: 10.1038/s41598-023-40236-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 08/07/2023] [Indexed: 08/23/2023] Open
Abstract
Magnetic skyrmions, topological quasiparticles, are small stable magnetic textures that possess intriguing properties and potential for data storage applications. Hybrid nanostructures comprised of skyrmions and soft magnetic material can offer additional advantages for developing skyrmion-based spintronic and magnonic devices. We show that a Néel-type skyrmion confined within a nanodot placed on top of a ferromagnetic in-plane magnetized stripe produces a unique and compelling platform for exploring the mutual coupling between magnetization textures. The skyrmion induces an imprint upon the stripe, which, in turn, asymmetrically squeezes the skyrmion in the dot, increasing their size and the range of skyrmion stability at small values of Dzyaloshinskii-Moriya interaction, as well as introducing skyrmion bi-stability. Finally, by exploiting the properties of the skyrmion in a hybrid system, we demonstrate unlimited skyrmion transport along a racetrack, free of the skyrmion Hall effect.
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Roshani S, Koziel S, Yahya SI, Chaudhary MA, Ghadi YY, Roshani S, Golunski L. Mutual Coupling Reduction in Antenna Arrays Using Artificial Intelligence Approach and Inverse Neural Network Surrogates. SENSORS (BASEL, SWITZERLAND) 2023; 23:7089. [PMID: 37631625 PMCID: PMC10459678 DOI: 10.3390/s23167089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 08/03/2023] [Accepted: 08/07/2023] [Indexed: 08/27/2023]
Abstract
This paper presents a novel approach to reducing undesirable coupling in antenna arrays using custom-designed resonators and inverse surrogate modeling. To illustrate the concept, two standard patch antenna cells with 0.07λ edge-to-edge distance were designed and fabricated to operate at 2.45 GHz. A stepped-impedance resonator was applied between the antennas to suppress their mutual coupling. For the first time, the optimum values of the resonator geometry parameters were obtained using the proposed inverse artificial neural network (ANN) model, constructed from the sampled EM-simulation data of the system, and trained using the particle swarm optimization (PSO) algorithm. The inverse ANN surrogate directly yields the optimum resonator dimensions based on the target values of its S-parameters being the input parameters of the model. The involvement of surrogate modeling also contributes to the acceleration of the design process, as the array does not need to undergo direct EM-driven optimization. The obtained results indicate a remarkable cancellation of the surface currents between two antennas at their operating frequency, which translates into isolation as high as -46.2 dB at 2.45 GHz, corresponding to over 37 dB improvement as compared to the conventional setup.
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Kubiak A. Comparative study of TiO 2-Fe 3O 4 photocatalysts synthesized by conventional and microwave methods for metronidazole removal. Sci Rep 2023; 13:12075. [PMID: 37495674 PMCID: PMC10371990 DOI: 10.1038/s41598-023-39342-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 07/24/2023] [Indexed: 07/28/2023] Open
Abstract
This study focused on a direct comparison of conventional hydrothermal and microwave treatment during the synthesis of TiO2-Fe3O4 photocatalyst, which is an effective catalyst for decomposing metronidazole. The photocatalyst underwent various characterization analyses, including X-ray diffraction, Raman spectroscopy, transmission electron microscopy, energy dispersive X-ray, and diffuse reflectance spectroscopy. The Raman spectroscopy analysis revealed that the materials obtained through the conventional hydrothermal treatment consisted of separate phases of anatase and magnetite. On the other hand, the materials synthesized using the microwave process showed a noticeable shift in the Eg band (143 cm-1) and its half-width towards higher wavenumbers. This shift is likely due to the introduction of Fe ions into the TiO2 lattice. Additionally, both conventional hydrothermal and microwave synthesis routes produced TiO2-Fe3O4 systems with superparamagnetic properties, as demonstrated by SQUID magnetic measurements. The TEM analysis revealed that the materials synthesized using the microwave process exhibited higher homogeneity, with no noticeable large aggregates observed. Finally, this work proposed a convenient LED photoreactor that effectively utilized the photo-oxidative properties of TiO2-Fe3O4 photocatalysts to remove metronidazole. Combining photoactive TiO2-Fe3O4 catalysts with an energy-efficient LED reactor resulted in a low electrical energy per order (EEO).
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Pradhan NC, Koziel S, Barik RK, Pietrenko-Dabrowska A. Bandwidth-Controllable Third-Order Band Pass Filter Using Substrate-Integrated Full- and Semi-Circular Cavities. SENSORS (BASEL, SWITZERLAND) 2023; 23:6162. [PMID: 37448011 DOI: 10.3390/s23136162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/01/2023] [Accepted: 07/03/2023] [Indexed: 07/15/2023]
Abstract
The article presents a novel circular substrate-integrated waveguide (SIW) bandpass filter (BPF) with controllable bandwidth. The proposed BPF was configured using two microstrip feed lines, semi-circular SIW cavities, capacitive slots, and inductive vias. The circular cavity was divided into two halves, and the two copies were cascaded. The resulting bisected and cascaded structures were then connected back-to-back. Finally, by introducing two inductive vias to the circular center cavity, a transmission zero was generated. In order to examine the design concept, a coupling matrix was generated. To demonstrate the theory, a third-order BPF was realized, fabricated, and experimentally validated. The BPF prototype features a wide passband of 8.7%, a low insertion loss of 1.1 dB, and a stopband of 1.5 f0 with a rejection level better than 20 dB, which makes it a potential candidate for microwave sensing and communication industries.
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Srutkova D, Kozakova H, Novotna T, Gorska S, Hermanova PP, Hudcovic T, Svabova T, Sinkora M, Schwarzer M. Exopolysaccharide from Lacticaseibacillus rhamnosus induces IgA production in airways and alleviates allergic airway inflammation in mouse model. Eur J Immunol 2023; 53:e2250135. [PMID: 37177812 DOI: 10.1002/eji.202250135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Revised: 04/14/2023] [Accepted: 05/10/2023] [Indexed: 05/15/2023]
Abstract
The currently observed high prevalence of allergic diseases has been associated with changes in microbial exposure in industrialized countries. Defined bacterial components represent a new strategy for modulating the allergic immune response. We show that intranasal administration of exopolysaccharide (EPS) isolated from Lacticaseibacillus (L.) rhamnosus LOCK900 induces TGF-β1, IgA, and regulatory FoxP3+ T-cells in the lungs of naïve mice. Using the ovalbumin mouse model, we demonstrate that intranasal administration of EPS downregulates the development of allergic airway inflammation and the Th2 cytokine response in sensitized individuals. At the same time, EPS treatment of sensitized mice, similar to EPS-induced responses in naïve mice, significantly increased the level of total, OVA-specific, and also bacteria-specific IgA in bronchoalveolar lavage and the number of IgA-producing B-cells in the lung tissue of these mice. Thus, EPS derived from L. rhamnosus LOCK900 can be considered a safe candidate for preventing the development of allergic symptoms in the lungs of sensitized individuals upon exposure to an allergen.
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Wielento A, Bereta GP, Szczęśniak K, Jacuła A, Terekhova M, Artyomov MN, Hasegawa Y, Grabiec AM, Potempa J. Accessory fimbrial subunits and PPAD are necessary for TLR2 activation by Porphyromonas gingivalis. Mol Oral Microbiol 2023. [PMID: 37347653 DOI: 10.1111/omi.12427] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 06/02/2023] [Accepted: 06/04/2023] [Indexed: 06/24/2023]
Abstract
Porphyromonas gingivalis is an oral pathogen that promotes dysbiosis by quenching the bactericidal activity of the host immune system while maintaining chronic inflammation, leading to periodontitis. This involves the secretion of virulence factors such as P. gingivalis peptidyl arginine deiminase (PPAD), which converts the C-terminal Arg residues of bacterial and host-derived proteins and peptides into citrulline. We have previously shown that PPAD activity and major fimbriae (containing FimA) are necessary for P. gingivalis to activate Toll-like receptor 2 (TLR2). TLR2 is an important component of the innate immune system and plays a predominant role in the recognition of P. gingivalis by host cells. Here, we extend those findings to show that P. gingivalis strains deficient for PPAD and fimbriae induced almost identical transcriptional profiles in infected primary human gingival fibroblasts (PHGFs), but these differed substantially from the transcriptome elicited by the wild-type ATCC 33277 strain. Apparently, PPAD-modified fimbriae trigger the host cell response to P. gingivalis, as confirmed by showing that the proinflammatory host cell response mediated by TLR2 is dependent on PPAD activity and the presence of fimbriae, with type I fimbriae as the most potent TLR2 activators. We also found that PPAD-modified accessory fimbrial subunits (FimC, FimD, and FimE) alone or in combination are TLR2 ligands in a reporter cell line. Although FimA polymerization to form the fimbrial shaft was not required for TLR2 activation, the secretion and proteolytic maturation of FimA were necessary for signaling by accessory Fim proteins. This was supported by showing that the proinflammatory activation of PHGFs is dependent on PPAD and accessory fimbrial subunits. We conclude that accessory fimbrial subunits are modified by PPAD and stimulate the response to P. gingivalis infection in a TLR2-dependent manner.
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Singh AK, Pomorski A, Wu S, Peris-Díaz MD, Czepczyńska-Krężel H, Krężel A. The connection of α- and β-domains in mammalian metallothionein-2 differentiates Zn(II) binding affinities, affects folding, and determines zinc buffering properties. Metallomics 2023; 15:mfad029. [PMID: 37147085 PMCID: PMC10243857 DOI: 10.1093/mtomcs/mfad029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2023] [Accepted: 05/03/2023] [Indexed: 05/07/2023]
Abstract
Mammalian metallothioneins (MTs) are small Cys-rich proteins involved in Zn(II) and Cu(I) homeostasis. They bind seven Zn(II) ions in two distinct β- and α-domains, forming Zn3Cys9 and Zn4Cys11 clusters, respectively. After six decades of research, their role in cellular buffering of Zn(II) ions has begun to be understood recently. This is because of different affinities of bound ions and the proteins' coexistence in variously Zn(II)-loaded Zn4-7MT species in the cell. To date, it has remained unclear how these mechanisms of action occur and how the affinities are differentiated despite the Zn(S-Cys)4 coordination environment being the same. Here, we dissect the molecular basis of these phenomena by using several MT2 mutants, hybrid protein, and isolated domains. Through a combination of spectroscopic and stability studies, thiol(ate) reactivity, and steered molecular dynamics, we demonstrate that both protein folding and thermodynamics of Zn(II) ion (un)binding significantly differ between isolated domains and the whole protein. Close proximity reduces the degrees of freedom of separated domains, making them less dynamic. It is caused by the formation of intra- and interdomain electrostatic interactions. The energetic consequence of domains connection has a critical impact on the role of MTs in the cellular environment, where they function not only as a zinc sponge but also as a zinc buffering system keeping free Zn(II) in the right concentrations. Any change of that subtle system affects the folding mechanism, zinc site stabilities, and cellular zinc buffer components.
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Lipowsky R, Ghosh R, Satarifard V, Sreekumari A, Zamaletdinov M, Różycki B, Miettinen M, Grafmüller A. Leaflet Tensions Control the Spatio-Temporal Remodeling of Lipid Bilayers and Nanovesicles. Biomolecules 2023; 13:926. [PMID: 37371505 DOI: 10.3390/biom13060926] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 06/29/2023] Open
Abstract
Biological and biomimetic membranes are based on lipid bilayers, which consist of two monolayers or leaflets. To avoid bilayer edges, which form when the hydrophobic core of such a bilayer is exposed to the surrounding aqueous solution, a single bilayer closes up into a unilamellar vesicle, thereby separating an interior from an exterior aqueous compartment. Synthetic nanovesicles with a size below 100 nanometers, traditionally called small unilamellar vesicles, have emerged as potent platforms for the delivery of drugs and vaccines. Cellular nanovesicles of a similar size are released from almost every type of living cell. The nanovesicle morphology has been studied by electron microscopy methods but these methods are limited to a single snapshot of each vesicle. Here, we review recent results of molecular dynamics simulations, by which one can monitor and elucidate the spatio-temporal remodeling of individual bilayers and nanovesicles. We emphasize the new concept of leaflet tensions, which control the bilayers' stability and instability, the transition rates of lipid flip-flops between the two leaflets, the shape transformations of nanovesicles, the engulfment and endocytosis of condensate droplets and rigid nanoparticles, as well as nanovesicle adhesion and fusion. To actually compute the leaflet tensions, one has to determine the bilayer's midsurface, which represents the average position of the interface between the two leaflets. Two particularly useful methods to determine this midsurface are based on the density profile of the hydrophobic lipid chains and on the molecular volumes.
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Koziel S, Pietrenko-Dabrowska A. On nature-inspired design optimization of antenna structures using variable-resolution EM models. Sci Rep 2023; 13:8373. [PMID: 37225863 DOI: 10.1038/s41598-023-35470-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 05/18/2023] [Indexed: 05/26/2023] Open
Abstract
Numerical optimization has been ubiquitous in antenna design for over a decade or so. It is indispensable in handling of multiple geometry/material parameters, performance goals, and constraints. It is also challenging as it incurs significant CPU expenses, especially when the underlying computational model involves full-wave electromagnetic (EM) analysis. In most practical cases, the latter is imperative to ensure evaluation reliability. The numerical challenges are even more pronounced when global search is required, which is most often carried out using nature-inspired algorithms. Population-based procedures are known for their ability to escape from local optima, yet their computational efficiency is poor, which makes them impractical when applied directly to EM models. A common workaround is the utilization of surrogate modeling techniques, typically in the form of iterative prediction-correction schemes, where the accumulated EM simulation data is used to identify the promising regions of the parameter space and to refine the surrogate model predictive power at the same time. Notwithstanding, implementation of surrogate-assisted procedures is often intricate, whereas their efficacy may be hampered by the dimensionality issues and considerable nonlinearity of antenna characteristics. This work investigates the benefits of incorporating variable-resolution EM simulation models into nature-inspired algorithms for optimization of antenna structures, where the model resolution pertains to the level of discretization density of an antenna structure in the full-wave simulation model. The considered framework utilizes EM simulation models which share the same physical background and are selected from a continuous spectrum of allowable resolutions. The early stages of the search process are carried out with the use of the lowest fidelity model, which is subsequently automatically increased to finally reach the high-fidelity antenna representation (i.e., considered as sufficiently accurate for design purposes). Numerical validation is executed using several antenna structures of distinct types of characteristics, and a particle swarm optimizer as the optimization engine. The results demonstrate that appropriate resolution adjustment profiles permit considerable computational savings (reaching up to eighty percent in comparison to high-fidelity-based optimization) without noticeable degradation of the search process reliability. The most appealing features of the presented approach-apart from its computational efficiency-are straightforward implementation and versatility.
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Bień D, Michalczuk M, Łysek-Gładysińska M, Jóźwik A, Wieczorek A, Matuszewski A, Kinsner M, Konieczka P. Nano-Sized Selenium Maintains Performance and Improves Health Status and Antioxidant Potential While Not Compromising Ultrastructure of Breast Muscle and Liver in Chickens. Antioxidants (Basel) 2023; 12:antiox12040905. [PMID: 37107280 PMCID: PMC10135471 DOI: 10.3390/antiox12040905] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 03/22/2023] [Accepted: 04/08/2023] [Indexed: 04/29/2023] Open
Abstract
The poultry industry is looking for the most effective sources of selenium (Se) for commercial use. Over the past five years, nano-Se has attracted a great deal of attention in terms of its production, characterisation and possible application in poultry production. The objective of this study was to evaluate the effects of dietary levels of inorganic and organic Se, selenised yeast and nano forms of selenium on breast meat quality, liver and blood markers of antioxidants, the ultrastructure of tissue and the health status of chickens. A total of 300 one-day-old chicks Ross 308 were divided into 4 experimental groups, in 5 replications, with 15 birds per replication. Birds were fed the following treatments: a standard commercial diet containing inorganic Se in the form of inorganic Se at the level of 0.3 mg/kg diet and an experimental diet with an increased level of Se (0.5 mg/kg diet). The use of other forms of Se (nano-Se) versus sodium selenate significantly influences (p ≤ 0.05) a higher collagen content and does not impair physico-chemical properties in the breast muscle or the growth performance of the chickens. In addition, the use of other forms of selenium at an increased dose versus sodium selenate affected (p ≤ 0.01) the elongation of sarcomeres in the pectoral muscle while reducing (p ≤ 0.01) mitochondrial damage in hepatocytes and improving (p ≤ 0.05) oxidative indices. The use of nano-Se at a dose of 0.5 mg/kg feed has high bioavailability and low toxicity without negatively affecting the growth performance and while improving breast muscle quality parameters and the health status of the chickens.
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Yurt R, Torpi H, Kizilay A, Koziel S, Pietrenko-Dabrowska A, Mahouti P. Buried object characterization by data-driven surrogates and regression-enabled hyperbolic signature extraction. Sci Rep 2023; 13:5717. [PMID: 37029217 PMCID: PMC10082193 DOI: 10.1038/s41598-023-32925-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 04/04/2023] [Indexed: 04/09/2023] Open
Abstract
This work addresses artificial-intelligence-based buried object characterization using FDTD-based electromagnetic simulation toolbox of a Ground Penetrating Radar (GPR) to generate B-scan data. In data collection, FDTD-based simulation tool, gprMax is used. The task is to estimate geophysical parameters of a cylindrical shape object of various radii, buried at different positions in the dry soil medium simultaneously and independently of each other. The proposed methodology capitalizes on a fast and accurate data-driven surrogate model developed for object characterization in terms of its vertical and lateral position, and the size. The surrogate is constructed in a computationally efficient manner as compared to methodologies using 2D B-scan image. This is achieved by operating at the level of hyperbolic signatures extracted from the B-scan data through linear regression, which effectively reduces the dimensionality and the size of data. The proposed methodology relies on reducing of 2D B-scan image to 1D data including variation of reflected electric fields' amplitudes with respect to the scanning aperture. The input of the surrogate model is the extracted hyperbolic signature obtained through linear regression executed on the background subtracted B-scan profiles. The hyperbolic signatures encode information about the geophysical parameters of the buried object, including depth, lateral position, and radius, all of which can be extracted using proposed methodology. Parametric estimation of the object radius and the estimation of the location parameters simultaneously is a challenging problem. Applying the application of processing steps on B-scan profiles incurs high computational costs, which is a limitation of the current methodologies. The metamodel itself is rendered using a novel deep-learning-based modified multilayer perceptron (M2LP) framework. The presented object characterization technique is favourably benchmarked against the state-of-the-art regression techniques, including Multilayer Perceptron (MLP), Support Vector Regression Machine (SVRM), and Convolutional Neural Network (CNN). The verification results demonstrate the average mean absolute error of 10 mm, and the average relative error of 8 percent, both corroborating the relevance of the proposed M2LP framework. In addition, the presented methodology provides a well-structured relation between the geophysical parameters of object and the extracted hyperbolic signatures. For the sake of supplementary verification under realistic scenarios, it is also applied for scenarios involving noisy data. The environmental and internal noise of the GPR system and their effect is analyzed as well. Furthermore, the proposed surrogate modeling approach is validated using measurement data, which is indicative of suitability of the approach to handle physical measurements as data sources.
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Brito-Costa S, Jonason PK, Tosi M, Antunes R, Silva S, Castro F. Opinions and options about COVID-19: Personality correlates and sex differences in two European countries. PLoS One 2022; 17:e0268193. [PMID: 35657914 PMCID: PMC9165842 DOI: 10.1371/journal.pone.0268193] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 04/24/2022] [Indexed: 12/04/2022] Open
Abstract
In the initial months of the COVID-19 pandemic in 2020, we collected data (N = 1,420) from Portugal and Spain in relation to personality (i.e., Dark Triad traits, Big Five traits, religiousness, and negative affect) and attitudes related to COVID-19 about its origins, opinions on how to deal with it, and fear of it. The most pervasive patterns we found were: (1) neurotic-type dispositions were associated with stronger opinions about the origins of the virus and leave people to have more fear of the virus but also more trust in tested establishments to provide help. (2): religious people were less trusting of science, thought prayer was answer, and attributed the existence of the virus to an act of God. We also found that sex differences and country differences in attitudes towards COVID-19 were mediate by sex/country differences in personality traits like emotional stability, religiousness, and negative affect. For instance, women reported more fear of COVID-19 than men did, and this was verified by women’s greater tendency to have negative affect and low emotional stability relative to men. Results point to the central role of neuroticism in accounting for variance in broad-spectrum attitudes towards COVID-19.
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Kabala AM, Binko K, Godard F, Charles C, Dautant A, Baranowska E, Skoczen N, Gombeau K, Bouhier M, Becker HD, Ackerman SH, Steinmetz LM, Tribouillard-Tanvier D, Kucharczyk R, di Rago JP. Assembly-dependent translation of subunits 6 (Atp6) and 9 (Atp9) of ATP synthase in yeast mitochondria. Genetics 2022; 220:iyac007. [PMID: 35100419 PMCID: PMC8893259 DOI: 10.1093/genetics/iyac007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 12/30/2021] [Indexed: 12/04/2022] Open
Abstract
The yeast mitochondrial ATP synthase is an assembly of 28 subunits of 17 types of which 3 (subunits 6, 8, and 9) are encoded by mitochondrial genes, while the 14 others have a nuclear genetic origin. Within the membrane domain (FO) of this enzyme, the subunit 6 and a ring of 10 identical subunits 9 transport protons across the mitochondrial inner membrane coupled to ATP synthesis in the extra-membrane structure (F1) of ATP synthase. As a result of their dual genetic origin, the ATP synthase subunits are synthesized in the cytosol and inside the mitochondrion. How they are produced in the proper stoichiometry from two different cellular compartments is still poorly understood. The experiments herein reported show that the rate of translation of the subunits 9 and 6 is enhanced in strains with mutations leading to specific defects in the assembly of these proteins. These translation modifications involve assembly intermediates interacting with subunits 6 and 9 within the final enzyme and cis-regulatory sequences that control gene expression in the organelle. In addition to enabling a balanced output of the ATP synthase subunits, these assembly-dependent feedback loops are presumably important to limit the accumulation of harmful assembly intermediates that have the potential to dissipate the mitochondrial membrane electrical potential and the main source of chemical energy of the cell.
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Sawicki AJ, Żemojtel-Piotrowska M, Balcerowska JM, Sawicka MJ, Piotrowski J, Sedikides C, Jonason PK, Maltby J, Adamovic M, Agada AMD, Ahmed O, Al-Shawaf L, Appiah SCY, Ardi R, Babakr ZH, Bălţătescu S, Bonato M, Cowden RG, Chobthamkit P, De Pretto L, Gouveia VV, Haretche C, Iliško D, Aruta JJB, Jia F, Jovanović V, Jukić T, Kamble SV, Khachatryan N, Klicperova-Baker M, Koralov M, Kovacs M, Kretchner M, Fernandez AL, Liik K, Malik NI, Malysheva K, Moon C, Muehlbacher S, Nartova-Bochaver S, Torres-Marín J, Özsoy E, Park J, Piccinelli E, Ramos-Diaz J, Riđić O, Samekin A, Starc A, Kiêu TTT, Tomsik R, Umeh CS, Wills-Herrera E, Wlodarczyk A, Vally Z, Zand S. The fear of COVID-19 scale: Its structure and measurement invariance across 48 countries. Psychol Assess 2022; 34:294-310. [PMID: 35049326 DOI: 10.1037/pas0001102] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Coronavirus disease (COVID-19) has been a source of fear around the world. We asked whether the measurement of this fear is trustworthy and comparable across countries. In particular, we explored the measurement invariance and cross-cultural replicability of the widely used Fear of COVID-19 scale (FCV-19S), testing community samples from 48 countries (N = 14,558). The findings indicate that the FCV-19S has a somewhat problematic structure, yet the one-factor solution is replicable across cultural contexts and could be used in studies that compare people who vary on gender and educational level. The validity of the scale is supported by a consistent pattern of positive correlations with perceived stress and general anxiety. However, given the unclear structure of the FCV-19S, we recommend using latent factor scores, instead of raw scores, especially in cross-cultural comparisons. (PsycInfo Database Record (c) 2022 APA, all rights reserved).
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Wnuk A, Przepiórska K, Pietrzak BA, Kajta M. Posttreatment Strategy Against Hypoxia and Ischemia Based on Selective Targeting of Nonnuclear Estrogen Receptors with PaPE-1. Neurotox Res 2021; 39:2029-2041. [PMID: 34797527 PMCID: PMC8639538 DOI: 10.1007/s12640-021-00441-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 11/03/2021] [Accepted: 11/04/2021] [Indexed: 02/06/2023]
Abstract
Newly synthesized Pathway Preferential Estrogen-1 (PaPE-1) selectively activates membrane estrogen receptors (mERs), namely, mERα and mERβ, and has been shown to evoke neuroprotection; however, its effectiveness in protecting brain tissue against hypoxia and ischemia has not been verified in a posttreatment paradigm. This is the first study showing that a 6-h delayed posttreatment with PaPE-1 inhibited hypoxia/ischemia-induced neuronal death, as indicated by neutral red uptake in mouse primary cell cultures in vitro. The effect was accompanied by substantial decreases in neurotoxicity and neurodegeneration in terms of LDH release and Fluoro-Jade C staining of damaged cells, respectively. The mechanisms of the neuroprotective action of PaPE-1 also involved apoptosis inhibition demonstrated by normalization of both mitochondrial membrane potential and expression levels of apoptosis-related genes and proteins such as Fas, Fasl, Bcl2, FAS, FASL, BCL2, BAX, and GSK3β. Furthermore, PaPE-1-evoked neuroprotection was mediated through a reduction in ROS formation and restoration of cellular metabolic activity that had become dysregulated due to hypoxia and ischemia. These data provide evidence that targeting membrane non-GPER estrogen receptors with PaPE-1 is an effective therapy that protects brain neurons from hypoxic/ischemic damage, even when applied with a 6-h delay from injury onset.
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Hajduk B, Bednarski H, Jarka P, Janeczek H, Godzierz M, Tański T. Thermal and optical properties of PMMA films reinforced with Nb 2O 5 nanoparticles. Sci Rep 2021; 11:22531. [PMID: 34795332 PMCID: PMC8602437 DOI: 10.1038/s41598-021-01282-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Accepted: 10/20/2021] [Indexed: 11/25/2022] Open
Abstract
The article presents the thermal and physical properties of PMMA composite films with the addition of Nb2O5 nanoparticles. The addition of nanoparticles to PMMA mainly influenced the optical transmission and glass transition temperature of composite films compared to pure PMMA. It is clearly visible in the results of the conducted ellipsometric and differential scanning calorimetry tests. X-ray studies showed that the heat treatment of the samples resulted in the ordering of the polymer structure (flattening of the polymer chains). Examining the surface of the samples with scanning electron microscopy, it can be seen that Nb2O5 nanoparticles formed unusual, branched formations resembling "snowflakes".
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Rożek K, Rola K, Zubek S. Slight dependence of temperate-forest herbaceous plants, Geum urbanum and Senecio ovatus, on arbuscular mycorrhizal fungi (AMF) enables them to colonise soils with a low level of AMF abundance. PLoS One 2021; 16:e0258862. [PMID: 34699539 PMCID: PMC8547634 DOI: 10.1371/journal.pone.0258862] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Accepted: 10/06/2021] [Indexed: 11/25/2022] Open
Abstract
While numerous studies have revealed that arbuscular mycorrhizal fungi (AMF) enhance plant performance, the influence of these symbionts on temperate-forest herbaceous species in relation to soil physical and chemical properties has been left largely unexplored. Therefore, two perennial herbs, Geum urbanum (Rosaceae) and Senecio ovatus (Asteraceae), were examined in a laboratory pot experiment to determine whether AMF influenced their growth, photosynthetic performance index, and N and P contents in biomass. The treatments, involving three widespread AMF species, were prepared in the soils of two habitats colonised by both plants, namely beech and riparian forests, as follows: (1) control—soils without AMF, (2) Claroideoglomus claroideum, (3) Funneliformis geosporus, and (4) Funneliformis mosseae. Neither shoot mass nor photosynthetic performance index of G. urbanum and S. ovatus was enhanced by AMF. Senecio ovatus root mass was increased compared to control only by F. geosporus. Inconsistent effects were observed in N and P contents in shoots and roots of both species. The direction and magnitude of these responses were dependent on the fungal species and soil type. Although the plant species belong to families whose representatives are usually regularly colonised by and highly responsive to AMF, our study indicates that AMF had only a slight impact on the performance of G. urbanum and S. ovatus at the early stages of their development. The plants being slightly dependent on AMF are thus adapted to colonise temperate-forest soils with a low level of availability of AMF propagules.
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Bereznicka A, Mikolajczyk K, Szymczak-Kulus K, Kapczynska K, Majorczyk E, Modlinska A, Piasecki T, Kaczmarek R, Czerwinski M. Two Paralogous Gb3/CD77 Synthases in Birds Show Different Preferences for Their Glycoprotein and Glycosphingolipid Substrates. Int J Mol Sci 2021; 22:9761. [PMID: 34575935 PMCID: PMC8466213 DOI: 10.3390/ijms22189761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 09/06/2021] [Accepted: 09/06/2021] [Indexed: 11/22/2022] Open
Abstract
Most glycosyltransferases show remarkable gross and fine substrate specificity, which is reflected in the old one enzyme-one linkage paradigm. While human Gb3/CD77 synthase is a glycosyltransferase that synthesizes the Galα1→4Gal moiety mainly on glycosphingolipids, its pigeon homolog prefers glycoproteins as acceptors. In this study, we characterized two Gb3/CD77 synthase paralogs found in pigeons (Columba livia). We evaluated their specificities in transfected human teratocarcinoma 2102Ep cells by flow cytofluorometry, Western blotting, high-performance thin-layer chromatography, mass spectrometry and metabolic labelling with 14C-galactose. We found that the previously described pigeon Gb3/CD77 synthase (called P) can use predominately glycoproteins as acceptors, while its paralog (called M), which we serendipitously discovered while conducting this study, efficiently synthesizes Galα1→4Gal caps on both glycoproteins and glycosphingolipids. These two paralogs may underlie the difference in expression profiles of Galα1→4Gal-terminated glycoconjugates between neoavians and mammals.
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Jablonska P, Kutryb‐Zajac B, Mierzejewska P, Jasztal A, Bocian B, Lango R, Rogowski J, Chlopicki S, Smolenski RT, Slominska EM. The new insight into extracellular NAD + degradation-the contribution of CD38 and CD73 in calcific aortic valve disease. J Cell Mol Med 2021; 25:5884-5898. [PMID: 34142751 PMCID: PMC8256368 DOI: 10.1111/jcmm.15912] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 08/03/2020] [Accepted: 08/21/2020] [Indexed: 12/26/2022] Open
Abstract
Nicotinamide adenine dinucleotide (NAD+ ) is crucial for cell energy metabolism and many signalling processes. Recently, we proved the role of ecto-enzymes in controlling adenine nucleotide-dependent pathways during calcific aortic valve disease (CAVD). This study aimed to investigate extracellular hydrolysis of NAD+ and mononucleotide nicotinamide (NMN) in aortic valves and aorta fragments of CAVD patients and on the inner aortic surface of ecto-5'-nucleotidase knockout mice (CD73-/-). Human non-stenotic valves (n = 10) actively converted NAD+ and NMN via both CD73 and NAD+ -glycohydrolase (CD38) according to our analysis with RP-HPLC and immunofluorescence. In stenotic valves (n = 50), due to reduced CD73 activity, NAD+ was degraded predominantly by CD38 and additionally by ALP and eNPP1. CAVD patients had significantly higher hydrolytic rates of NAD+ (0.81 ± 0.07 vs 0.56 ± 0.10) and NMN (1.12 ± 0.10 vs 0.71 ± 0.08 nmol/min/cm2 ) compared with controls. CD38 was also primarily engaged in human vascular NAD+ metabolism. Studies using specific ecto-enzyme inhibitors and CD73-/- mice confirmed that CD73 is not the only enzyme involved in NAD+ and NMN hydrolysis and that CD38 had a significant contribution to these pathways. Modifications of extracellular NAD+ and NMN metabolism in aortic valve cells may be particularly important in valve pathology and could be a potential therapeutic target.
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Korneva A, Straumal B, Kilmametov A, Gornakova A, Wierzbicka-Miernik A, Lityńska-Dobrzyńska L, Chulist R, Gondek Ł, Cios G, Zięba P. Omega Phase Formation in Ti-3wt.%Nb Alloy Induced by High-Pressure Torsion. MATERIALS (BASEL, SWITZERLAND) 2021; 14:2262. [PMID: 33925626 PMCID: PMC8123906 DOI: 10.3390/ma14092262] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 04/23/2021] [Accepted: 04/26/2021] [Indexed: 12/05/2022]
Abstract
It is well known that severe plastic deformation not only leads to strong grain refinement and material strengthening but also can drive phase transformations. A study of the fundamentals of α → ω phase transformations induced by high-pressure torsion (HPT) in Ti-Nb-based alloys is presented in the current work. Before HPT, a Ti-3wt.%Nb alloy was annealed at two different temperatures in order to obtain the α-phase state with different amounts of niobium. X-ray diffraction analysis, scanning electron microscopy (SEM) and transmission electron microscopy (TEM) were applied for the characterisation of phase transitions and evolution of the microstructure. A small amount of the β-phase was found in the initial states, which completely transformed into the ω-phase during the HPT process. During HPT, strong grain refinement in the α-phase took place, as did partial transformation of the α- into the ω-phase. Therefore, two kinds of ω-phase, each with different chemical composition, were obtained after HPT. The first one was formed from the β-phase, enriched in Nb, and the second one from the α-phase. It was also found that the transformation of the α-phase into the ω-phase depended on the Nb concentration in the α-Ti phase. The less Nb there was in the α-phase, the more of the α-phase was transformed into the ω-phase.
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Urbanowicz P, Bitar I, Izdebski R, Baraniak A, Literacka E, Hrabák J, Gniadkowski M. Epidemic Territorial Spread of IncP-2-Type VIM-2 Carbapenemase-Encoding Megaplasmids in Nosocomial Pseudomonas aeruginosa Populations. Antimicrob Agents Chemother 2021; 65:e02122-20. [PMID: 33526490 PMCID: PMC8097432 DOI: 10.1128/aac.02122-20] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 01/25/2021] [Indexed: 11/20/2022] Open
Abstract
In 2003 to 2004, the first five VIM-2 metallo-β-lactamase (MBL)-producing Pseudomonas aeruginosa (MPPA) isolates with an In4-like integron, In461 (aadB-blaVIM-2-aadA6), on conjugative plasmids were identified in three hospitals in Poland. In 2005 to 2015, MPPA expanded much in the country, and as many as 80 isolates in a collection of 454 MPPA (∼18%) had In461, one of the two most common MBL-encoding integrons. The organisms occurred in 49 hospitals in 33 cities of 11/16 main administrative regions. Pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) classified them into 55 pulsotypes and 35 sequence types (STs), respectively, revealing their remarkable genetic diversity overall, with only a few small clonal clusters. S1 nuclease/hybridization assays and mating of 63 representative isolates showed that ∼85% of these had large In461-carrying plasmids, ∼350 to 550 kb, usually self-transmitting with high efficiency (∼10-1 to 10-2 per donor cell). The plasmids from 19 isolates were sequenced and subjected to structural and single-nucleotide-polymorphism (SNP)-based phylogenetic analysis. These formed a subgroup within a family of IncP-2-type megaplasmids, observed worldwide in pseudomonads from various environments and conferring resistance/tolerance to multiple stress factors, including antibiotics. Their microdiversity in Poland arose mainly from acquisition of different accessory fragments, as well as new resistance genes and multiplication of these. Short-read sequence and/or PCR mapping confirmed the In461-carrying plasmids in the remaining isolates to be the IncP-2 types. The study demonstrated a large-scale epidemic spread of multidrug resistance plasmids in P. aeruginosa populations, creating an epidemiological threat. It contributes to the knowledge on IncP-2 types, which are interesting research objects in resistance epidemiology, environmental microbiology, and biotechnology.
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