• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5081678)   Today's Articles (100)
For: Hornung G, Bar-Ziv R, Rosin D, Tokuriki N, Tawfik DS, Oren M, Barkai N. Noise-mean relationship in mutated promoters. Genome Res 2012;22:2409-17. [PMID: 22820945 DOI: 10.1101/gr.139378.112] [Citation(s) in RCA: 118] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Number Cited by Other Article(s)
51
Morgan MD, Patin E, Jagla B, Hasan M, Quintana-Murci L, Marioni JC. Quantitative genetic analysis deciphers the impact of cis and trans regulation on cell-to-cell variability in protein expression levels. PLoS Genet 2020;16:e1008686. [PMID: 32168362 PMCID: PMC7094872 DOI: 10.1371/journal.pgen.1008686] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 03/25/2020] [Accepted: 02/19/2020] [Indexed: 11/19/2022]  Open
52
Rodrigo G. Ab initio scaling laws between noise and mean of gene expression. Phys Rev E 2020;100:032415. [PMID: 31640034 DOI: 10.1103/physreve.100.032415] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Indexed: 12/17/2022]
53
Domingues AF, Kulkarni R, Giotopoulos G, Gupta S, Vinnenberg L, Arede L, Foerner E, Khalili M, Adao RR, Johns A, Tan S, Zeka K, Huntly BJ, Prabakaran S, Pina C. Loss of Kat2a enhances transcriptional noise and depletes acute myeloid leukemia stem-like cells. eLife 2020;9:e51754. [PMID: 31985402 PMCID: PMC7039681 DOI: 10.7554/elife.51754] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 01/24/2020] [Indexed: 12/21/2022]  Open
54
Markovian approaches to modeling intracellular reaction processes with molecular memory. Proc Natl Acad Sci U S A 2019;116:23542-23550. [PMID: 31685609 PMCID: PMC6876203 DOI: 10.1073/pnas.1913926116] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
55
Chapal M, Mintzer S, Brodsky S, Carmi M, Barkai N. Resolving noise-control conflict by gene duplication. PLoS Biol 2019;17:e3000289. [PMID: 31756183 PMCID: PMC6874299 DOI: 10.1371/journal.pbio.3000289] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Accepted: 10/21/2019] [Indexed: 12/15/2022]  Open
56
Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 2019;116:21085-21093. [PMID: 31570626 DOI: 10.1073/pnas.1902823116] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
57
Eling N, Morgan MD, Marioni JC. Challenges in measuring and understanding biological noise. Nat Rev Genet 2019;20:536-548. [PMID: 31114032 PMCID: PMC7611518 DOI: 10.1038/s41576-019-0130-6] [Citation(s) in RCA: 147] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
58
Schmiedel JM, Carey LB, Lehner B. Empirical mean-noise fitness landscapes reveal the fitness impact of gene expression noise. Nat Commun 2019;10:3180. [PMID: 31320634 PMCID: PMC6639414 DOI: 10.1038/s41467-019-11116-w] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 06/21/2019] [Indexed: 12/23/2022]  Open
59
Qiu H, Zhang B, Zhou T. Analytical results for a generalized model of bursty gene expression with molecular memory. Phys Rev E 2019;100:012128. [PMID: 31499786 DOI: 10.1103/physreve.100.012128] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2019] [Indexed: 06/10/2023]
60
de Jong TV, Moshkin YM, Guryev V. Gene expression variability: the other dimension in transcriptome analysis. Physiol Genomics 2019;51:145-158. [DOI: 10.1152/physiolgenomics.00128.2018] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
61
Genomic encoding of transcriptional burst kinetics. Nature 2019;565:251-254. [PMID: 30602787 PMCID: PMC7610481 DOI: 10.1038/s41586-018-0836-1] [Citation(s) in RCA: 319] [Impact Index Per Article: 53.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Accepted: 11/28/2018] [Indexed: 01/30/2023]
62
Urban EA, Johnston RJ. Buffering and Amplifying Transcriptional Noise During Cell Fate Specification. Front Genet 2018;9:591. [PMID: 30555516 PMCID: PMC6282114 DOI: 10.3389/fgene.2018.00591] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Accepted: 11/15/2018] [Indexed: 11/29/2022]  Open
63
Schöne S, Bothe M, Einfeldt E, Borschiwer M, Benner P, Vingron M, Thomas-Chollier M, Meijsing SH. Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise. PLoS Genet 2018;14:e1007793. [PMID: 30427832 PMCID: PMC6261644 DOI: 10.1371/journal.pgen.1007793] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Revised: 11/28/2018] [Accepted: 10/26/2018] [Indexed: 12/29/2022]  Open
64
Zoller B, Little SC, Gregor T. Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting. Cell 2018;175:835-847.e25. [PMID: 30340044 PMCID: PMC6779125 DOI: 10.1016/j.cell.2018.09.056] [Citation(s) in RCA: 95] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2018] [Revised: 07/02/2018] [Accepted: 09/26/2018] [Indexed: 01/14/2023]
65
Haberle V, Stark A. Eukaryotic core promoters and the functional basis of transcription initiation. Nat Rev Mol Cell Biol 2018;19:621-637. [PMID: 29946135 PMCID: PMC6205604 DOI: 10.1038/s41580-018-0028-8] [Citation(s) in RCA: 447] [Impact Index Per Article: 63.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
66
Eling N, Richard AC, Richardson S, Marioni JC, Vallejos CA. Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data. Cell Syst 2018;7:284-294.e12. [PMID: 30172840 PMCID: PMC6167088 DOI: 10.1016/j.cels.2018.06.011] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Revised: 05/02/2018] [Accepted: 06/25/2018] [Indexed: 01/10/2023]
67
Liu J, Lestrade D, Arabaciyan S, Cescut J, François JM, Capp JP. A GRX1 Promoter Variant Confers Constitutive Noisy Bimodal Expression That Increases Oxidative Stress Resistance in Yeast. Front Microbiol 2018;9:2158. [PMID: 30283413 PMCID: PMC6156533 DOI: 10.3389/fmicb.2018.02158] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 08/23/2018] [Indexed: 11/13/2022]  Open
68
Duveau F, Hodgins-Davis A, Metzger BP, Yang B, Tryban S, Walker EA, Lybrook T, Wittkopp PJ. Fitness effects of altering gene expression noise in Saccharomyces cerevisiae. eLife 2018;7:37272. [PMID: 30124429 PMCID: PMC6133559 DOI: 10.7554/elife.37272] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2018] [Accepted: 08/17/2018] [Indexed: 01/22/2023]  Open
69
Nicolas D, Phillips NE, Naef F. What shapes eukaryotic transcriptional bursting? MOLECULAR BIOSYSTEMS 2018;13:1280-1290. [PMID: 28573295 DOI: 10.1039/c7mb00154a] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
70
Li C, Cesbron F, Oehler M, Brunner M, Höfer T. Frequency Modulation of Transcriptional Bursting Enables Sensitive and Rapid Gene Regulation. Cell Syst 2018;6:409-423.e11. [PMID: 29454937 DOI: 10.1016/j.cels.2018.01.012] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 11/16/2017] [Accepted: 01/11/2018] [Indexed: 01/17/2023]
71
Catarino RR, Stark A. Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation. Genes Dev 2018;32:202-223. [PMID: 29491135 PMCID: PMC5859963 DOI: 10.1101/gad.310367.117] [Citation(s) in RCA: 124] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
72
Effects of mutation and selection on plasticity of a promoter activity in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 2017;114:E11218-E11227. [PMID: 29259117 DOI: 10.1073/pnas.1713960115] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
73
Faure AJ, Schmiedel JM, Lehner B. Systematic Analysis of the Determinants of Gene Expression Noise in Embryonic Stem Cells. Cell Syst 2017;5:471-484.e4. [DOI: 10.1016/j.cels.2017.10.003] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 06/06/2017] [Accepted: 10/02/2017] [Indexed: 01/23/2023]
74
Hendy O, Campbell J, Weissman JD, Larson DR, Singer DS. Differential context-specific impact of individual core promoter elements on transcriptional dynamics. Mol Biol Cell 2017;28:3360-3370. [PMID: 28931597 PMCID: PMC5687036 DOI: 10.1091/mbc.e17-06-0408] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Revised: 08/23/2017] [Accepted: 09/11/2017] [Indexed: 11/11/2022]  Open
75
van Boxtel C, van Heerden JH, Nordholt N, Schmidt P, Bruggeman FJ. Taking chances and making mistakes: non-genetic phenotypic heterogeneity and its consequences for surviving in dynamic environments. J R Soc Interface 2017;14:20170141. [PMID: 28701503 PMCID: PMC5550968 DOI: 10.1098/rsif.2017.0141] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 06/16/2017] [Indexed: 01/08/2023]  Open
76
Wu S, Li K, Li Y, Zhao T, Li T, Yang YF, Qian W. Independent regulation of gene expression level and noise by histone modifications. PLoS Comput Biol 2017;13:e1005585. [PMID: 28665997 PMCID: PMC5513504 DOI: 10.1371/journal.pcbi.1005585] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Revised: 07/17/2017] [Accepted: 05/22/2017] [Indexed: 11/21/2022]  Open
77
Delvigne F, Baert J, Sassi H, Fickers P, Grünberger A, Dusny C. Taking control over microbial populations: Current approaches for exploiting biological noise in bioprocesses. Biotechnol J 2017;12. [PMID: 28544731 DOI: 10.1002/biot.201600549] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Revised: 04/10/2017] [Accepted: 04/12/2017] [Indexed: 01/19/2023]
78
Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. Mol Neurobiol 2017;55:1871-1904. [PMID: 28233272 DOI: 10.1007/s12035-017-0427-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Accepted: 01/26/2017] [Indexed: 01/31/2023]
79
Promoter-Targeted Small Activating RNAs Alter Nucleosome Positioning. RNA ACTIVATION 2017. [DOI: 10.1007/978-981-10-4310-9_4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
80
Yao J. Imaging Transcriptional Regulation of Eukaryotic mRNA Genes: Advances and Outlook. J Mol Biol 2017;429:14-31. [DOI: 10.1016/j.jmb.2016.11.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Revised: 11/03/2016] [Accepted: 11/10/2016] [Indexed: 01/07/2023]
81
de Jonge WJ, O'Duibhir E, Lijnzaad P, van Leenen D, Groot Koerkamp MJ, Kemmeren P, Holstege FC. Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters. EMBO J 2016;36:274-290. [PMID: 27979920 PMCID: PMC5286361 DOI: 10.15252/embj.201695621] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Revised: 10/18/2016] [Accepted: 11/01/2016] [Indexed: 11/28/2022]  Open
82
Soltani M, Singh A. Effects of cell-cycle-dependent expression on random fluctuations in protein levels. ROYAL SOCIETY OPEN SCIENCE 2016;3:160578. [PMID: 28083102 PMCID: PMC5210684 DOI: 10.1098/rsos.160578] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Accepted: 11/10/2016] [Indexed: 06/06/2023]
83
Yang E, Wang G, Yang J, Zhou B, Tian Y, Cai JJ. Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action. Hum Mol Genet 2016;25:4911-4919. [PMID: 28171656 PMCID: PMC6078589 DOI: 10.1093/hmg/ddw314] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 08/19/2016] [Accepted: 09/12/2016] [Indexed: 11/14/2022]  Open
84
Jędrak J, Ochab-Marcinek A. Time-dependent solutions for a stochastic model of gene expression with molecule production in the form of a compound Poisson process. Phys Rev E 2016;94:032401. [PMID: 27739798 DOI: 10.1103/physreve.94.032401] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Indexed: 06/06/2023]
85
Soltani M, Vargas-Garcia CA, Antunes D, Singh A. Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes. PLoS Comput Biol 2016;12:e1004972. [PMID: 27536771 PMCID: PMC4990281 DOI: 10.1371/journal.pcbi.1004972] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Accepted: 07/29/2016] [Indexed: 12/22/2022]  Open
86
Chen H, Larson DR. What have single-molecule studies taught us about gene expression? Genes Dev 2016;30:1796-810. [PMID: 27601529 PMCID: PMC5024679 DOI: 10.1101/gad.281725.116] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
87
Lenstra TL, Rodriguez J, Chen H, Larson DR. Transcription Dynamics in Living Cells. Annu Rev Biophys 2016;45:25-47. [PMID: 27145880 DOI: 10.1146/annurev-biophys-062215-010838] [Citation(s) in RCA: 113] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
88
Liu J, François JM, Capp JP. Use of noise in gene expression as an experimental parameter to test phenotypic effects. Yeast 2016;33:209-16. [DOI: 10.1002/yea.3152] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2015] [Revised: 01/12/2016] [Accepted: 01/14/2016] [Indexed: 01/12/2023]  Open
89
Turnaev II, Rasskazov DA, Arkova OV, Ponomarenko MP, Ponomarenko PM, Savinkova LK, Kolchanov NA. Hypothetical SNP markers that significantly affect the affinity of the TATA-binding protein to VEGFA, ERBB2, IGF1R, FLT1, KDR, and MET oncogene promoters as chemotherapy targets. Mol Biol 2016. [DOI: 10.1134/s0026893316010209] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
90
Ravarani CNJ, Chalancon G, Breker M, de Groot NS, Babu MM. Affinity and competition for TBP are molecular determinants of gene expression noise. Nat Commun 2016;7:10417. [PMID: 26832815 PMCID: PMC4740812 DOI: 10.1038/ncomms10417] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2015] [Accepted: 12/09/2015] [Indexed: 12/14/2022]  Open
91
Metzger BPH, Duveau F, Yuan DC, Tryban S, Yang B, Wittkopp PJ. Contrasting Frequencies and Effects of cis- and trans-Regulatory Mutations Affecting Gene Expression. Mol Biol Evol 2016;33:1131-46. [PMID: 26782996 DOI: 10.1093/molbev/msw011] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
92
Zhou T, Liu T. Quantitative analysis of gene expression systems. QUANTITATIVE BIOLOGY 2015. [DOI: 10.1007/s40484-015-0056-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
93
Guantes R, Díaz-Colunga J, Iborra FJ. Mitochondria and the non-genetic origins of cell-to-cell variability: More is different. Bioessays 2015;38:64-76. [PMID: 26660201 DOI: 10.1002/bies.201500082] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
94
Roberts E, Be'er S, Bohrer C, Sharma R, Assaf M. Dynamics of simple gene-network motifs subject to extrinsic fluctuations. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;92:062717. [PMID: 26764737 DOI: 10.1103/physreve.92.062717] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Indexed: 06/05/2023]
95
Ponomarenko PM, Ponomarenko MP. Sequence-based prediction of transcription upregulation by auxin in plants. J Bioinform Comput Biol 2015;13:1540009. [PMID: 25666655 DOI: 10.1142/s0219720015400090] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
96
Brenner N, Newman CM, Osmanović D, Rabin Y, Salman H, Stein DL. Universal protein distributions in a model of cell growth and division. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;92:042713. [PMID: 26565278 DOI: 10.1103/physreve.92.042713] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Indexed: 06/05/2023]
97
Keren L, van Dijk D, Weingarten-Gabbay S, Davidi D, Jona G, Weinberger A, Milo R, Segal E. Noise in gene expression is coupled to growth rate. Genome Res 2015;25:1893-902. [PMID: 26355006 PMCID: PMC4665010 DOI: 10.1101/gr.191635.115] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2015] [Accepted: 09/09/2015] [Indexed: 11/24/2022]
98
Vance KW, Woodcock DJ, Reid JE, Bretschneider T, Ott S, Koentges G. Conserved Cis-Regulatory Modules Control Robustness in Msx1 Expression at Single-Cell Resolution. Genome Biol Evol 2015;7:2762-78. [PMID: 26342140 PMCID: PMC4607535 DOI: 10.1093/gbe/evv179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
99
Hansen AS, O'Shea EK. cis Determinants of Promoter Threshold and Activation Timescale. Cell Rep 2015;12:1226-33. [PMID: 26279577 DOI: 10.1016/j.celrep.2015.07.035] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2015] [Revised: 07/08/2015] [Accepted: 07/15/2015] [Indexed: 11/16/2022]  Open
100
Zoller B, Nicolas D, Molina N, Naef F. Structure of silent transcription intervals and noise characteristics of mammalian genes. Mol Syst Biol 2015. [PMID: 26215071 PMCID: PMC4547851 DOI: 10.15252/msb.20156257] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
PrevPage 2 of 3 123Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA