Stable isotopes in mammalian research: a beginner's guide

Diet of invasive wild pigs in a landscape dominated by sugar cane plantations

Understanding the mechanisms by which alien species become invasive can assure successful control programs and mitigate alien species’ impacts. The distribution of invasive wild pigs (Sus scrofa) has been sharply expanding throughout all regions of Brazil in the last few years. Here we demonstrate that large monocultural plantations provide the primary resource subsidies to invasive wild pigs in Brazil. We analyzed 106 stomach contents and carbon stable isotopes (δ13C) of 50 hair samples of wild pigs from a population immersed in a landscape dominated by sugar cane agriculture. Stomach contents were dominated by corn (41%), sugarcane (28.5%), vegetal matter (all other vegetation besides crops, 27%), and animal matter (vertebrates and invertebrates, 4%). Bayesian mixing model analysis of δ13C showed that food sources from C4 photosynthetic pathway (represented by corn and sugarcane) accounted for 94% of the long-term diet, while C3 food sources for only 6.2%. Our results indicate that corn and sugar cane are subsidizing the diet of wild pigs and can facilitate the population growth of this invasive species. Given that Brazil is a major agricultural producer and a hotspot of biodiversity, it is extremely concerning that extensive agriculture may accelerate the expansion of this invasive species, resulting in economic losses and cascading effects on natural habitats.

Small-Mammal Shooting as a Conduit for Lead Exposure in Avian Scavengers

Lead (Pb) exposure is a widespread wildlife conservation threat. Although commonly associated with Pb-based ammunition from big-game hunting, small mammals (e.g., ground squirrels) shot for recreational or pest-management purposes represent a potentially important Pb vector in agricultural regions. We measured the responses of avian scavengers to pest-shooting events and examined their Pb exposure through consumption of shot mammals. There were 3.4-fold more avian scavengers at shooting fields relative to those at fields with no recent shooting, and avian scavengers spent 1.8-fold more time feeding after recent shooting events. We isotopically labeled shot ground squirrels in the field with an enriched ¹⁵N isotope tracer; 6% of avian scavengers sampled within a 39 km radius reflected this tracer in their blood. However, 33% of the avian scavengers within the average foraging dispersal distance of nests (0.6-3.7 km) were labeled, demonstrating the importance of these shooting fields as a source of food for birds nesting in close proximity. Additionally, Pb concentrations in 48% of avian scavengers exceeded subclinical poisoning benchmarks for sensitive species (0.03-0.20 μg/g w/w), and those birds exhibited reduced δ-aminolevulinic acid dehydratase activity, indicating a biochemical effect of Pb. The use of shooting to manage small mammal pests is a common practice globally. Efforts that can reduce the use of Pb-based ammunition may lessen the negative physiological effects of Pb exposure on avian scavengers.

Morphology of the limb, shell and head explain the variation in performance and ecology across 14 turtle taxa (12 species)

Given that morphology directly influences the ability of an organism to utilize its habitat and dietary resources, it also influences fitness. Comparing the relationship between morphology, performance and ecology is fundamental to understand how organisms evolve to occupy a wide range of habitats and diets. In turtles, studies have documented important relationships between morphology, performance and ecology, but none was field based or considered limb, shell and head morphology simultaneously. We compared the morphology, performance and ecology of 14 turtle taxa (12 species) in Mexico that range in their affinity to water and in their diet. We took linear measurements of limb, shell and head variables. We measured maximum swimming speed, maximum bite force and how often turtles were encountered on land, and we used stable isotopes to assess trophic position. We used these data to test the following three hypotheses: (1) morphology, performance and ecology covary; (2) limb and shell variables, like hand length, are correlated with swimming speed and the percentage of time spent on land; and (3) head variables, such as head width, are correlated with bite force and stable isotopes. We find support for these hypotheses and provide the first evidence that morphology influences performance and ecology in turtles in the field.

Distinct nitrogen isotopic compositions of healthy and cancerous tissue in mice brain and head&neck micro-biopsies

BACKGROUND

Cancerous cells can recycle metabolic ammonium for their growth. As this ammonium has a low nitrogen isotope ratio (15N/14N), its recycling may cause cancer tissue to have lower 15N/14N than surrounding healthy tissue. We investigated whether, within a given tissue type in individual mice, tumoral and healthy tissues could be distinguished based on their 15N/14N.

METHODS

Micro-biopsies of murine tumors and adjacent tissues were analyzed for 15N/14N using novel high-sensitivity methods. Isotopic analysis was pursued in Nude and C57BL/6 mice models with mature orthotopic brain and head&neck tumors generated by implantation of H454 and MEERL95 murine cells, respectively.

RESULTS

In the 7 mice analyzed, the brain tumors had distinctly lower 15N/14N than healthy neural tissue. In the 5 mice with head&neck tumors, the difference was smaller and more variable. This was at least partly due to infiltration of healthy head&neck tissue by tumor cells. However, it may also indicate that the 15N/14N difference between tumoral and healthy tissue depends on the nitrogen metabolism of the healthy organ in question.

CONCLUSIONS

The findings, coupled with the high sensitivity of the 15N/14N measurement method used here, suggest a new approach for micro-biopsy-based diagnosis of malignancy as well as an avenue for investigation of cancer metabolism.

From leaves to seeds? The dietary shift in late Miocene colobine monkeys of southeastern Europe

Extant colobine monkeys are specialized leaf eaters. But during the late Miocene, western Eurasia was home to colobines that were less efficient at chewing leaves than they were at breaking seed shells. To understand the link between folivory and granivory in this lineage, the dietary niche of Mesopithecus delsoni and Mesopithecus pentelicus was investigated in southeastern Europe, where a major environmental change occurred during the late Miocene. We combined dental topographic estimates of chewing efficiency with dental microwear texture analysis of enamel wear facets. Mesopithecus delsoni was more efficient at chewing leaves than M. pentelicus, the dental topography of which matches an opportunistic seed eater. Concurrently, microwear complexity increases in M. pentelicus, especially in the northernmost localities corresponding to present-day Bulgaria. This is interpreted as a dietary shift toward hard foods such as seeds or tubers, which is consistent with the savanna and open mixed forest biomes that covered Bulgaria during the Tortonian. The fact that M. delsoni was better adapted to folivory and consumed a lower amount of hard foods than M. pentelicus suggests that colobines either adapted to folivory before their dispersal to Europe or evolved adaptations to leaf consumption in multiple occurrences.

Niche partitioning in small mammals: interspecific and biome-level analyses using stable isotopes

Small mammal assemblages from South America provide a unique opportunity to measure coexistence and niche partitioning between marsupials and placentals. We tested how these two major clades partition environmental resources by comparing stable isotopic ratios of similar sized Didelphidae and Sigmodontinae in four Brazilian biomes: Pampas grassland, Pantanal wetland, Cerrado woodland savanna, and Atlantic Forest. Generally, didelphid isotopic niche follows a scaling law, because we found an association between δ15N enrichment and body mass. Sigmodontines that primarily partition the environment via forest strata showed a greater intake of C4 or/and crassulacean acid metabolism (CAM) plants than didelphids, as reflected by their wider trophic niche. Values of δ13C were highest in savannas and grasslands (Cerrado and Pampas biomes), and values of δ15N were highest in the Atlantic Forest (in sigmodontines) and Pampas (in didelphids). While assessing patterns between the two major Brazilian biomes (Atlantic Forest and Cerrado), we found evidence of a broader trophic niche for both clades in the Cerrado. In the Atlantic Forest, niche occupation by Didelphidae was completely enclosed within the Sigmodontinae trophic niche. Both clades showed less overlap in the Cerrado, a less productive environment. Our results highlight the importance of a comparative framework and the use of stable isotopes for testing ecological questions related to how small mammalian communities partition their niche.

Dietary protein content and digestibility influences discrimination of amino acid nitrogen isotope values in a terrestrial omnivorous mammal

RATIONALE

Ecologists increasingly determine the δ¹⁵ N values of amino acids (AA) in animal tissue; "source" AA typically exhibit minor variation between diet and consumer, while "trophic" AA have increased δ¹⁵ N values in consumers. Thus, trophic-source δ¹⁵ N offsets (i.e., Δ¹⁵ N_T-S ) reflect trophic position in a food web. However, even minor variations in δ¹⁵ N_{source AA} values may influence the magnitude of offset that represents a trophic step, known as the trophic discrimination factor (i.e., TDF_T-S ). Diet digestibility and protein content can influence the δ¹⁵ N values of bulk animal tissue, but the effects of these factors on AA Δ¹⁵ N_T-S and TDF_T-S in mammals are unknown.

METHODS

We fed captive mice (Mus musculus) either (A) a low-fat, high-fiber diet with low, intermediate, or high protein; or (B) a high-fat, low-fiber diet with low or intermediate protein. Mouse muscle and dietary protein were analyzed for bulk tissue δ¹⁵ N using elemental analyzer-isotope ratio mass spectrometry (EA-IRMS), and were also hydrolyzed into free AA that were analyzed for δ¹⁵ N using gas chromatography-combustion-IRMS.

RESULTS

As dietary protein increased, Δ¹⁵ N_{Consumer-Diet} slightly declined for bulk muscle tissue in both experiments; increased for AA in the low-fat, high-fiber diet (A); and remained the same or decreased for AA in the high-fat, low-fiber diet (B). The effects of dietary protein on Δ¹⁵ N_T-S and on TDF_T-S varied by AA but were consistent between variables.

CONCLUSIONS

Diets were less digestible and included more protein in Experiment A than in Experiment B. As a result, the mice in Experiment A probably oxidized more AA, resulting in greater Δ¹⁵ N_{Consumer-Diet} values. However, the similar responses of Δ¹⁵ N_T-S and of TDF_T-S to diet variation suggest that if diet samples are available, Δ¹⁵ N_T-S accurately tracks trophic position. If diet samples are not available, the patterns presented here provide a basis to interpret Δ¹⁵ N_T-S values. The trophic-source offset of Pro-Lys did not vary across diets, and therefore may be more reliable for omnivores than other offsets (e.g., Glu-Phe).

A methodological roadmap to quantify animal-vectored spatial ecosystem subsidies

Energy, nutrients and organisms move over landscapes, connecting ecosystems across space and time. Meta-ecosystem theory investigates the emerging properties of local ecosystems coupled spatially by these movements of organisms and matter, by explicitly tracking exchanges of multiple substances across ecosystem borders. To date, meta-ecosystem research has focused mostly on abiotic flows-neglecting biotic nutrient flows. However, recent work has indicated animals act as spatial nutrient vectors when they transport nutrients across landscapes in the form of excreta, egesta and their own bodies. Partly due to its high level of abstraction, there are few empirical tests of meta-ecosystem theory. Furthermore, while animals may be viewed as important mediators of ecosystem functions, better integration of tools is needed to develop predictive insights of their relative roles and impacts on diverse ecosystems. We present a methodological roadmap that explains how to do such integration by discussing how to combine insights from movement, foraging and ecosystem ecology to develop a coherent understanding of animal-vectored nutrient transport on meta-ecosystems processes. We discuss how the slate of newly developed technologies and methods-tracking devices, mechanistic movement models, diet reconstruction techniques and remote sensing-that when integrated have the potential to advance the quantification of animal-vectored nutrient flows and increase the predictive power of meta-ecosystem theory. We demonstrate that by integrating novel and established tools of animal ecology, ecosystem ecology and remote sensing, we can begin to identify and quantify animal-mediated nutrient translocation by large animals. We also provide conceptual examples that show how our proposed integration of methodologies can help investigate ecosystem impacts of large animal movement. We conclude by describing practical advancements to understanding cross-ecosystem contributions of animals on the move. Understanding the mechanisms by which animals shape ecosystem dynamics is important for ongoing conservation, rewilding and restoration initiatives around the world, and for developing more accurate models of ecosystem nutrient budgets. Our roadmap will enable ecologists to better qualify and quantify animal-mediated nutrient translocation for animals on the move.

Spatial and temporal variability in the diet of Pacific marten (Martes caurina) on Haida Gwaii: an apex predator in a highly modified ecosystem

Knowledge of the diet ecology of apex predators in insular island ecosystems has direct applications to the conservation of endemic species at risk of extinction. We used stable isotopes of carbon and nitrogen to infer resource-use strategies of an indigenous predator, the Pacific marten (Martes caurina (Merriam, 1890)), in a highly modified ecosystem on Haida Gwaii, British Columbia, Canada. We used Bayesian isotopic mixing models to estimate the relative contributions of different food sources to marten diet across seasons and during overall lifetime, and to determine how diet varied with different levels of access to marine resources. Isotopes of carbon and nitrogen measured in hair and muscle tissue suggested that marten consumed salmon (3%–17%) and berries (25%–37%) seasonally; these diet groups were relatively minor components of the lifetime diet. Analysis of bone collagen suggested that terrestrial fauna — including birds, deer, small mammals, and invertebrates — contributed the most to diet (41%–55%), and marine invertebrates (38%–48%), not salmon (0%–3%), were the main allochthonous marine nutrient subsidy to lifetime diet. Plasticity in foraging ecology, combined with a broad dietary niche, introduced prey, notably the invasive Sitka black-tailed deer (Odocoileus hemionus sitkensis Merriam, 1898), as well as abundant marine resources, may allow marten to outcompete other indigenous and endemic carnivores on Haida Gwaii.

Stable Isotope Analysis of Specimens of Opportunity Reveals Ocean-Scale Site Fidelity in an Elusive Whale Species

Elusive wildlife are challenging to study, manage, or conserve, as the difficulty of obtaining specimens or conducting direct observations leads to major data deficiencies. Specimens of opportunity, such as salvaged carcasses or museum specimens, are a valuable source of fundamental biological and ecological information on data-deficient, elusive species, increasing knowledge of biodiversity, habitat and range, and population structure. Stable isotope analysis is a powerful indirect tool that can be used to infer foraging behavior and habitat use retrospectively from archived specimens. Beaked whales are a speciose group of cetaceans that are challenging to study in situ, and although Sowerby's beaked whale (Mesoplodon bidens) was discovered >200 years ago, little is known about its biology. We measured δ13C and δ15N stable isotope composition in bone, muscle, and skin tissue from 102 Sowerby's beaked whale specimens of opportunity collected throughout the North Atlantic Ocean to infer movement ecology and spatial population structure. Median δ13C and δ15N values in Sowerby's beaked whale bone, muscle, and skin tissues significantly differed between whales sampled from the east and west North Atlantic Ocean. Quadratic discriminant analysis that simultaneously considered δ13C and δ15N values correctly assigned >85% of the specimens to their collection region for all tissue types. These findings demonstrate Sowerby's beaked whale exhibits both short- and long-term site fidelity to the region from which the specimens were collected, suggest that this species is composed of two or more populations or exhibits a metapopulation structure, and have implications for conservation and management policy. Stable isotope analysis of specimens of opportunity proved a highly successful means of generating new spatial ecology data for this elusive species and is a method that can be effectively applied to other elusive species.

Intrapopulation foraging niche variation between phenotypes and genotypes of Spirit bear populations

Foraging niche variation within a species can contribute to the maintenance of phenotypic diversity. The multiniche model posits that phenotypes occupying different niches can contribute to the maintenance of balanced polymorphisms. Using coastal populations of black bears (Ursus americanus kermodei) from British Columbia, Canada, we examined potential foraging niche divergence between phenotypes (black and white "Spirit" coat color) and between genotypes (black-coated homozygote and heterozygous). We applied the Bayesian multivariate models, with biotracers of diet (δ13C and δ15N) together comprising the response variable, to draw inference about foraging niche variation. Variance-covariance matrices from multivariate linear mixed-effect models were visualized as the Bayesian standard ellipses in δ13C and δ15N isotopic space to assess potential seasonal and annual niche variation between phenotypes and genotypes. We did not detect a difference in annual isotopic foraging niche area in comparisons between genotypes or phenotypes. Consistent with previous field experimental and isotopic analyses, however, we found that white phenotype Spirit bears were modestly more enriched in δ15N during the fall foraging season, though with our modest sample sizes these results were not significant. Although also not statistically significant, variation in isotopic niches between genotypes revealed that heterozygotes were moderately more enriched in δ13C along hair segments grown during fall foraging compared with black-coated homozygotes. To the extent to which the pattern of elevated δ15N and δ13C may signal the consumption of salmon (Oncorhynchus spp.), as well as the influence of salmon consumption on reproductive fitness, these results suggest that black-coated heterozygotes could have a minor selective advantage in the fall compared with black-coated homozygotes. More broadly, our multivariate approach, coupled with knowledge of genetic variation underlying a polymorphic trait, provides new insight into the potential role of a multiniche mechanism in maintaining this rare morph of conservation priority in Canada's Great Bear Rainforest and could offer new understanding into polymorphisms in other systems.

Blow fly stable isotopes reveal larval diet: A case study in community level anthropogenic effects

Response to human impacts on the environment are typically initiated too late to remediate negative consequences. We present the novel use of stable isotope analysis (SIA) of blow flies to determine human influences on vertebrate communities in a range of human-inhabited environments, from a pristine national park to a dense metropolitan area. The refrain "you are what you eat" applies to the dietary isotope record of all living organisms, and for carrion-breeding blow flies, this translates to the type of carcasses present in an environment. Specifically, we show that carnivore carcasses make up a large proportion of the adult fly's prior larval diet, which contrasts to what has been reportedly previously for the wild adult fly diet (which consists of mostly herbivore resources). Additionally, we reveal the potential impact of human food on carcasses that were fed on by blow flies, underscoring the human influences on wild animal populations. Our results demonstrate that using SIA in conjunction with other methods (e.g., DNA analysis of flies) can reveal a comprehensive snapshot of the vertebrate community in a terrestrial ecosystem.

Isotope analysis combined with DNA barcoding provide new insights into the dietary niche of khulan in the Mongolian Gobi

With increasing livestock numbers, competition and avoidance are increasingly shaping resource availability for wild ungulates. Shifts in the dietary niche of wild ungulates are likely and can be expected to negatively affect their fitness. The Mongolian Gobi constitutes the largest remaining refuge for several threatened ungulates, but unprecedentedly high livestock numbers are sparking growing concerns over rangeland health and impacts on threatened ungulates like the Asiatic wild ass (khulan). Previous stable isotope analysis of khulan tail hair from the Dzungarian Gobi suggested that they graze in summer but switch to a poorer mixed C3 grass / C4 shrub diet in winter, most likely in reaction to local herders and their livestock. Here we attempt to validate these findings with a different methodology, DNA metabarcoding. Further, we extend the scope of the original study to the South Gobi Region, where we expect higher proportions of low-quality browse in the khulan winter diet due to a higher human and livestock presence. Barcoding confirmed the assumptions behind the seasonal diet change observed in the Dzungarian Gobi isotope data, and new isotope analysis revealed a strong seasonal pattern and higher C4 plant intake in the South Gobi Region, in line with our expectations. However, DNA barcoding revealed C4 domination of winter diet was due to C4 grasses (rather than shrubs) for the South Gobi Region. Slight climatic differences result in regional shifts in the occurrence of C3 and C4 grasses and shrubs, which do not allow for an isotopic separation along the grazer-browser continuum over the entire Gobi. Our findings do not allow us to confirm human impacts upon dietary preferences in khulan as we lack seasonal samples from the South Gobi Region. However, these data provide novel insight into khulan diet, raise new questions about plant availability versus preference, and provide a cautionary tale about indirect analysis methods if used in isolation or extrapolated to the landscape level. Good concordance between relative read abundance of C4 genera from barcoding and proportion of C4 plants from isotope analysis adds to a growing body of evidence that barcoding is a promising quantitative tool to understand resource partitioning in ungulates.

Trace mineral supplies for populations of little and large herbivores

Copper (Cu), iron (Fe), and zinc (Zn) are essential trace minerals for the reproduction, growth, and immunity of mammalian herbivore populations. We examined the relationships between Cu, Fe, and Zn in soils, common plants, and hepatic stores of two wild herbivores to assess the effects of weather, sex, and population density on the transfer of trace minerals from soils to mammals during the growing season. Soils, grasses, woody browse, hispid cotton rats (Sigmodon hispidus), and white-tailed deer (Odocoileus virginianus) were sampled across 19 sites. Concentrations of Cu, Fe, and Zn in grasses and browse species were not correlated with concentrations of those minerals in soils sampled from the same areas. Leaves of woody browse were higher in Cu, lower in Fe, and similar in Zn when compared with grasses. Available concentrations of soils were positively related to liver Cu and Zn in hispid cotton rats, which was consistent with the short lives and high productivity of these small mammals that rely on grass seed heads. Interactions between soil concentrations and weather also affected liver Cu and Fe in deer, which reflected the greater complexity of trophic transfers in large, long-lived, browsing herbivores. Population density was correlated with liver concentrations of Cu, Fe, and Zn in hispid cotton rats, and concentrations of Cu and Fe in deer. Liver Cu was < 5 mg/kg wet weight in at least 5% of animals at two of eight sites for hispid cotton rats and < 3.8 mg/kg wet weight in at least 5% of animals at three of 12 sites for deer, which could indicate regional limitation of Cu for populations of mammalian herbivores. Our data indicate that supplies of trace minerals may contribute to density dependence of herbivore populations. Local population density may therefore influence the prevalence of deficiency states and disease outbreak that exacerbate population cycles in wild mammals.

The effect of feeding adequate or deficient vitamin B6 or folic acid to breeders on methionine metabolism in 18-day-old chick embryos

Three isotopic tracers ([2,3,3-²H₃]-L-serine, [²H₁₁]-L-betaine, and [1-¹³C]-L-methionine) were administered by amnion injection into 18-day-old chick embryos to investigate the kinetics of methionine metabolism. The embryos utilized were from eggs collected from 34-week-old Cobb 500 broiler breeders that were fed either a control diet containing folic acid (1.25 mg/kg diet) and pyridoxine HCl (5 mg/kg diet) or diets devoid of supplemental pyridoxine or folic acid. Intermediate metabolites of methionine metabolism and polyamines were analyzed in 18-day-old chick embryos. There were no differences in hepatic [²H₂] methionine or [²H₃] cysteine enrichments or in physiological concentrations of sulfur amino acids for chick embryos from breeders fed the control diet and embryos from breeders fed diets containing no pyridoxine or folic acid. Supplementation of B₆ or folic acid did not affect the production of methionine and cysteine in chick embryos. However, breeders fed the control diet with both folic acid and pyridoxine supplementation produced embryos with a two-fold reduction of hepatic homocysteine and increased spermine compared with embryos from breeders fed diets containing no supplemental pyridoxine or folic acid (P < 0.05). Hepatic S-adenosylmethionine for embryos from breeders fed no supplemental B₆ was half the concentration compared with embryos from breeders fed the control diet. Embryos from breeders fed the control diet were utilized to determine the proportion of homocysteine going through remethylation and transsulfuration and also to determine the pathway of remethylation. Sixty-five percent of the methyl groups used for homocysteine remethylation from control embryos was via the MFMT pathway. Alternatively, 61% of homocysteine from control embryos was remethylated via the MFMT and the BHMT reactions and 39% of homocysteine was catabolized to cysteine via the transsulfuration pathway. These data show that in embryos, intermediate metabolites of methionine and polyamines increase in concentration when pyridoxine levels are provided in deficient concentrations to the breeder hen. In addition, this research demonstrates that folic acid deficient embryos conserve methionine, rather than catabolize it to cysteine.

Rocky escarpment versus savanna woodlands: comparing diet and body condition as indicators of habitat quality for the endangered northern quoll (Dasyurus hallucatus)

Abstract ContextUnderstanding what constitutes high-quality habitat for threatened species is critical for conservation management planning. The endangered northern quoll (Dasyurus hallucatus) has experienced an uneven range contraction among habitat types. Once common across multiple habitats of northern mainland Australia, declining populations have now contracted to rocky escarpments. AimThe island refuge of Groote Eylandt, Northern Territory, Australia, has not experienced the declines as seen on mainland Australia. Here, northern quolls persist in both rocky escarpment and savanna woodland, which provides a rare opportunity to investigate the habitat quality of rocky escarpments and savanna woodland for the northern quoll. MethodsNorthern quolls (n=111) were trapped in both rocky escarpment (n=61) and savanna woodland (n=50) habitats before the breeding season (May). We conducted body condition assessment, scat analysis, and measured trophic niche breadth of individuals occupying each habitat type. Key resultsFemale quolls occupying rocky escarpments exhibited a lower body condition than did quolls occupying savanna woodland. Quolls from rocky escarpments consumed a significantly higher proportion of mammals and fed within a narrower dietary niche than did those occupying savanna woodland. ConclusionsQuolls had adapted to the dietary resources available within each habitat type, suggesting that the lack of quolls in savanna woodland on the mainland is due to factors other than availability of dietary resources. ImplicationsGroote Eylandt is of critical conservation significance, where high numbers of northern quolls exist in both rocky escarpment and savanna woodland habitats. For population viability on the mainland, managing threats such as feral predators and inappropriate fire regimes in savanna woodland, particularly those surrounding rocky escarpment, should be prioritised.

Intraspecific variation and energy channel coupling within a Chilean kelp forest

The widespread importance of variable types of primary production, or energy channels, to consumer communities has become increasingly apparent. However, the mechanisms underlying this "multichannel" feeding remain poorly understood, especially for aquatic ecosystems that pose unique logistical constraints given the diversity of potential energy channels. Here, we use bulk tissue isotopic analysis along with carbon isotope (δ13 C) analysis of individual amino acids to characterize the relative contribution of pelagic and benthic energy sources to a kelp forest consumer community in northern Chile. We measured bulk tissue δ13 C and δ15 N for >120 samples; of these we analyzed δ13 C values of six essential amino acids (EAA) from nine primary producer groups (n = 41) and 11 representative nearshore consumer taxa (n = 56). Using EAA δ13 C data, we employed linear discriminant analysis (LDA) to assess how distinct EAA δ13 C values were between local pelagic (phytoplankton/particulate organic matter), and benthic (kelps, red algae, and green algae) endmembers. With this model, we were able to correctly classify nearly 90% of producer samples to their original groupings, a significant improvement on traditional bulk isotopic analysis. With this EAA isotopic library, we then generated probability distributions for the most important sources of production for each individual consumer and species using a bootstrap-resampling LDA approach. We found evidence for multichannel feeding within the community at the species level. Invertebrates tended to focus on either pelagic or benthic energy, deriving 13-67% of their EAA from pelagic sources. In contrast, mobile (fish) taxa at higher trophic levels used more equal proportions of each channel, ranging from 19% to 47% pelagically derived energy. Within a taxon, multichannel feeding was a result of specialization among individuals in energy channel usage, with 37 of 56 individual consumers estimated to derive >80% of their EAA from a single channel. Our study reveals how a cutting-edge isotopic technique can characterize the dynamics of energy flow in coastal food webs, a topic that has historically been difficult to address. More broadly, our work provides a mechanism as to how multichannel feeding may occur in nearshore communities, and we suggest this pattern be investigated in additional ecosystems.

Characteristic of Oral Squamous Cell Carcinoma Tissues Using Isotope Ratio Mass Spectrometry

Overall prognosis for patients with oral squamous cell carcinomas (OSSC) is still unfavourable. However, there is a hope that a novel diagnostic method may establish better cancer biology characteristics. The aim of this study was to evaluate the isotope ratio of nitrogen and carbon in OSSC as compared to margin and healthy tissue. A total of 18 patients with OSSC were included in the study. Specimens collected covered: four tumour, four margin and two healthy oral mucosa samples. The samples underwent further procedures: lyophilization and isotope ratio mass spectrometry. Measurements of the ratio of stable isotopes of nitrogen ¹⁵N/¹⁴N and carbon ¹³C/¹²C were performed. It is noticeable that the highest average nitrogen concentration was observed in tumour 12 ± 0.4% and the lowest in healthy tissues 8 ± 0.9% (p < 0.00001). The highest average carbon content was observed in healthy tissues 57 ± 2.2% and the lowest in tumour 46 ± 1.3% (p < 0.00001). Moreover, values of ¹⁵N/¹⁴N expressed in delta notation were the highest in healthy tissues 9.84 ± 0.61 and the lowest in tumour 8.92 ± 0.58. Values of ¹³C/¹²C tended to be higher in tumour −22.2 ± 0.89 and the lowest in healthy tissues −23.7 ± 1.2. Tumour tissues differ in isotopic composition from tissues taken from margin and healthy tissues taken from distant oral mucosa.

From diet to hair and blood: empirical estimation of discrimination factors for C and N stable isotopes in five terrestrial mammals

Carbon and nitrogen stable isotope ratios are used widely to describe wildlife animal diet composition and trophic interactions. To reconstruct consumer diet, the isotopic differences between consumers and their diet items—called the trophic discrimination factor (TDF)—must be known. Proxies of diet composition are sensitive to the accuracy of TDFs. However, specific TDFs are still missing for many species and tissues because only a few controlled studies have been carried out on captive animals. The aim of this study was to estimate TDFs for hair and blood for carbon and nitrogen stable isotopes for caribou, moose, white-tailed deer, eastern coyote, and black bear. We obtained stable isotope ratios for diet items, hair, and blood samples, of 21 captive adult mammals. Diet–tissue discrimination factors for carbon in hair (∆ 13CLE) ranged from 0.96‰ to 3.72‰ for cervids, 3.01‰ to 3.76‰ for coyote, and 5.15‰ to 6.35‰ for black bear, while nitrogen discrimination factors (∆ 15N) ranged from 2.58‰ to 5.95‰ for cervids, 2.90‰ to 3.13‰ for coyote, and 4.48‰ to 5.44‰ for black bear. The ∆ 13CLE values in coyote blood components ranged from 2.20‰ to 2.69‰ while ∆ 15N ranged from 3.30‰ to 4.41‰. In caribou serum, ∆ 13CLE reached 3.34 ± 1.28‰ while ∆ 15N reached 5.02 ± 0.07‰. The TDFs calculated in this study will allow the evaluation of diet composition and trophic relationships between these five mammal species and will have important implications for the study of endangered caribou populations for which the use of noninvasive tissue sampling is highly relevant.

Evaluation of two lipid removal methods for stable carbon and nitrogen isotope analysis in whale tissue

RATIONALE

The presence of lipids in animal tissues can influence the interpretation of stable isotope data, particularly in lipid-rich tissues such as the skin and muscle of marine mammals. The traditionally employed chloroform-methanol delipidation protocol has the potential to alter δ¹⁵ N values in proteinaceous tissues. Our objective was to determine whether the use of cyclohexane could be an alternative extraction method, effectively removing lipids without altering δ¹⁵ N values.

METHODS

Kidney, liver, muscle, and skin samples were collected from beach-cast Sowerby's beaked whales (Mesoplodon bidens). Control subsamples were processed without delipidation extraction, and duplicate subsamples were extracted with either chloroform-methanol or cyclohexane. δ¹³ C, δ¹⁵ N, and C:N values were determined by continuous-flow elemental analysis isotope ratio mass spectrometry. Paired Wilcoxon tests were used to evaluate the change in isotope ratios after extraction, and unpaired Wilcoxon tests were used to evaluate differences in isotope ratios between extractions.

RESULTS

Use of cyclohexane is an effective delipidation technique for tissues with low and moderate lipid content. Chemical delipidation influenced δ¹⁵ N values; extracted samples generally showed an increase in δ¹⁵ N values which varied from 0.0‰ to 1.7‰. Chloroform-methanol extraction resulted in alterations to δ¹⁵ N values greater than the analytical precision for all analyzed tissues. Changes to δ¹⁵ N values after cyclohexane extraction were at or near the analytical precision for liver and muscle but greater than the analytical precision for kidney and skin.

CONCLUSIONS

We recommend processing duplicate subsamples for stable isotope analysis, one with and one without extraction, in order to obtain accurate values for each isotope ratio. Prolonged chemical extractions are not necessary to effectively remove lipids. When samples are limited, we suggest using cyclohexane for tissues with low or moderate lipid content, and chloroform-methanol for lipid-rich tissues.

Mercury exposure to swallows breeding in Canada inferred from feathers grown on breeding and non-breeding grounds

Aerial insectivorous birds such as swallows have been the steepest declining groups of birds in North America over the last 50 years but whether such declines are linked to contaminants has not been examined. We sampled feathers from five species of swallow at multiple locations to assess total mercury [THg] exposure for adults during the non-breeding season, and for juveniles on the breeding grounds. We assessed Hg exposure to juvenile birds in crop- and grass-dominated landscapes to determine if land-use practices influenced feather [THg]. We assayed feathers for stable isotopes (δ²H, δ¹³C, δ¹⁵N) as proxies for relative habitat use and diet to determine their potential influence on feather [THg]. Feather [THg] was highest in adult bank swallows (Riparia riparia) and purple martins (Progne subis) from Saskatchewan and adult cliff swallows (Petrochelidon pyrrhonota) from western regions, indicating differential exposure to Hg on the non-breeding grounds. Juvenile bank, barn (Hirundo rustica) and tree (Tachycineta bicolor) swallows had lower feather [THg] in crop-dominated landscapes than grass-dominated landscapes in Saskatchewan, potentially resulting from lower use of wetland-derived insects due to wetland drainage and intensive agriculture. Feather [THg] was related to juvenile feather stable isotopes for several species, suggesting complex interactions with diet and environmental factors. Many individuals had feather [THg] values >2 µg/g, a threshold at which deleterious effects may occur. Our findings indicate differential Hg exposure among species of swallow, regions and land-uses and highlight the need for additional research to determine dietary and finer-scale land-use impacts on individual species and populations.

Isotopic niche of the American pika (Ochotona princeps) through space and time

Anthropogenic climate change is influencing the ecology and distribution of animals. The American pika (Ochotona princeps (Richardson, 1828)) is considered a model species for studying the effects of climate on small alpine mammals and has experienced local extirpation across its range. Using stable isotope analysis of two seasonal molts and bone collagen, we characterize the isotopic carbon and nitrogen niche of pika populations across their range and through time. We find pika isotopic diet to be stable across both time and space compared with other animals and considering the geographic and environmental extent of their range. We find that climatic, not geographic, factors explain part of the isotopic variation across their range. Both δ13C and δ15N from the fall-onset molt decrease with relative humidity of the environment and δ15N values from bone collagen increase with temperature and precipitation. We find a small but significant seasonal difference in δ13C, which could be explained by microbial enrichment of cached haypiles. We establish a baseline of pika isotopic diet and patterns related to climate across their range. We conclude that differences in isotopic signature between pika populations likely reflect the physiology of their forage plants in different environmental conditions.

Splitting hairs: dietary niche breadth modelling using stable isotope analysis of a sequentially grown tissue

Stable isotope data from durable, sequentially grown tissues (e.g. hair, claw, and baleen) is commonly used for modelling dietary niche breadth. The use of tissues grown over multiple months to years, however, has the potential to complicate isotopic niche breadth modelling, as time-averaged stable isotope signals from whole tissues may obscure information available from chronologically resolved stable isotope signals in serially sectioned tissues. We determined if whole samples of brown bear guard hair produced different isotopic niche breadth estimates than those produced from subsampled, serially sectioned samples of the same tissue from the same set of individuals. We sampled guard hair from brown bears (Ursus arctos) in four regions of Alaska with disparate biogeographies and dietary resource availability. Whole hair and serially sectioned hair samples were used to produce paired isotopic dietary niche breadth estimates for each region in the SIBER Bayesian model framework in R. Isotopic data from serially sectioned hair consistently produced larger estimates of isotopic dietary niche breadth than isotope data from whole hair samples. Serial sampling captures finer-scale changes in diet and when cumulatively used to estimate isotopic niche breadth, the serially sampled isotope data more fully captures dietary variability and true isotopic niche breadth.

Isotopic discrimination between carrion and elytra clippings of lab-reared American burying beetles (Nicrophorus americanus): Implications for conservation and evaluation of feeding relationships in the wild

RATIONALE

Differences in stable isotope composition between an animal and its diet are quantified by experimentally derived diet-tissue discrimination factors. Appropriate discrimination factors between consumers and prey are essential for interpreting stable isotope patterns in ecological studies. While available for many taxa, these values are rarely estimated for organisms within the carrion food web.

METHODS

We used a controlled-diet stable isotope feeding trial to quantify isotopic diet-tissue discrimination factors of carbon (δ¹³ C values) and nitrogen (δ¹⁵ N values) from laboratory-reared Nicrophorus americanus raised on carrion. We used exoskeleton samples of beetle elytra (wing covers) to determine diet-tissue discrimination factors using a continuous flow isotope ratio mass spectrometer equipped with an elemental analyzer. We also measured the isotopic compositions of five species of co-occurring, wild-caught burying beetles and evaluated feeding relationships.

RESULTS

We found differences in stable carbon discrimination between carrion sources (mammalian and avian) and lab-reared beetles, but no difference in stable nitrogen discrimination. Values for δ¹³ C did not differ among wild-caught burying beetle species, but values for δ¹⁵ N were significantly different for the three species with overlapping breeding seasons. Furthermore, wild-caught burying beetles within our study area do not appear to use avian carrion resources to rear their young.

CONCLUSIONS

This study informs future interpretation of stable isotope data for insects within the carrion food web. In addition, these results provide insight into carrion resources used by co-occurring burying beetle species in situ. We also demonstrated that independent of adult food type, the larval food source has a significant impact on the isotopic signatures of adult beetles, which can be estimated using a minimally invasive elytra clipping.

Spatial variation in diet-microbe associations across populations of a generalist North American carnivore

Generalist species, by definition, exhibit variation in niche attributes that promote survival in changing environments. Increasingly, phenotypes previously associated with a species, particularly those with wide or expanding ranges, are dissolving and compelling greater emphasis on population-level characteristics. In the present study, we assessed spatial variation in diet characteristics, gut microbiome and associations between these two ecological traits across populations of coyotes Canis latrans. We highlight the influence of the carnivore community in shaping these relationships, as the coyote varied from being an apex predator to a subordinate, mesopredator across sampled populations. We implemented a scat survey across three distinct coyote populations in Michigan, USA. We used carbon (δ¹³ C) and nitrogen (δ¹⁵ N) isotopic values to reflect consumption patterns and trophic level, respectively. Corresponding samples were also paired with 16S rRNA sequencing to describe the microbial community and correlate with isotopic values. Although consumption patterns were comparable, we found spatial variation in trophic level among coyote populations. Specifically, δ¹⁵ N was highest where coyotes were the apex predator and lowest where coyotes co-occurred with grey wolves Canis lupus. The gut microbial community exhibited marked spatial variation across populations with the lowest operational taxonomic units diversity found where coyotes occurred at their lowest trophic level. Bacteriodes and Fusobacterium dominated the microbiome and were positively correlated across all populations. We found no correlation between δ¹³ C and microbial community attributes. However, positive associations between δ¹⁵ N and specific microbial genera increased as coyotes ascended trophic levels. Coyotes provide a model for exploring implications of niche plasticity because they are a highly adaptable, wide-ranging omnivore. As coyotes continue to vary in trophic position and expand their geographic range, we might expect increased divergence within their microbial community, changes in physiology and alterations in behaviour.

Spatial and temporal variability in ringed seal (Pusa hispida) stable isotopes in the Beaufort Sea

Arctic ecosystem dynamics are shifting in response to warming temperatures and sea ice loss. Such ecosystems may be monitored by examining the diet of upper trophic level species, which varies with prey availability. To assess interannual variation in the Beaufort Sea ecosystem, we examined spatial and temporal trends in ringed seal (Pusa hispida) δ13C and δ15N in claw growth layers grown from 1964 to 2011. Stable isotopes were correlated with climate indices, environmental conditions, seal population productivity, and geographic location. Sex and age did not influence stable isotopes. Enriched 13C was linked to cyclonic circulation regimes, seal productivity, and westward sampling locations. Higher δ15N was linked to lower sea surface temperatures, a higher percentage of pups in the subsistence harvest, and sample locations that were eastward and further from shore. From the 1960s to 2000s, ringed seal niche width expanded, suggesting a diversification of diet due to expansion of prey and/or seal space use. Overall, trends in ringed seal stable isotopes indicate changes within the Beaufort Sea ecosystem affected by water temperatures and circulation regimes. We suggest that continued monitoring of upper trophic level species will yield insights into changing ecosystem structure with climate change.

Stable Isotope Enrichment (Δ15N) in the Predatory Flower Bug (Orius majusculus) Predicts Fitness-Related Differences between Diets

Mass rearing of insects, used both as biological control agents and for food and feed, is receiving increasing attention. Efforts are being made to improve diets that are currently in use, and to identify alternative diets, as is the case with the predatory flower bug (Orius majusculus) and other heteropteran predators, due to the high costs of their current diet, the eggs of the Mediterranean flour moth (E. kuehniella). The assessment of alternative diets may include measurements of the predator’s fitness-related traits (development time, weight, etc.), and biochemical analyses such as lipid and protein content in the diet and the insects. However, assessing diet quality via the predator’s fitness-related traits is laborious, and biochemical composition is often difficult to relate to the measured traits. Isotope analysis, previously used for diet reconstruction studies, can also serve as a tool for the assessment of diet quality. Here, the variation in discrimination factors or isotope enrichment (Δ¹⁵N and Δ¹³C) indicates the difference in isotopic ratio between the insect and its diet. In this study, we investigated the link between Δ¹⁵N and diet quality in the predatory bug Orius majusculus. Three groups of bugs were fed different diets: Ephestia kuehniella eggs, protein-rich Drosophila melanogaster and lipid-rich D. melanogaster. The isotopic enrichment and fitness-related measurements were assessed for each group. Results show a relation between Δ¹⁵N and fitness-related measurements, which conform to the idea that lower Δ¹⁵N indicates a higher diet quality.

Methylmercury exposure in wildlife: A review of the ecological and physiological processes affecting contaminant concentrations and their interpretation

Exposure to methylmercury (MeHg) can result in detrimental health effects in wildlife. With advances in ecological indicators and analytical techniques for measurement of MeHg in a variety of tissues, numerous processes have been identified that can influence MeHg concentrations in wildlife. This review presents a synthesis of theoretical principals and applied information for measuring MeHg exposure and interpreting MeHg concentrations in wildlife. Mercury concentrations in wildlife are the net result of ecological processes influencing dietary exposure combined with physiological processes that regulate assimilation, transformation, and elimination. Therefore, consideration of both physiological and ecological processes should be integrated when formulating biomonitoring strategies. Ecological indicators, particularly stable isotopes of carbon, nitrogen, and sulfur, compound-specific stable isotopes, and fatty acids, can be effective tools to evaluate dietary MeHg exposure. Animal species differ in their physiological capacity for MeHg elimination, and animal tissues can be inert or physiologically active, act as sites of storage, transformation, or excretion of MeHg, and vary in the timing of MeHg exposure they represent. Biological influences such as age, sex, maternal transfer, and growth or fasting are also relevant for interpretation of tissue MeHg concentrations. Wildlife tissues that represent current or near-term bioaccumulation and in which MeHg is the predominant mercury species (such as blood and eggs) are most effective for biomonitoring ecosystems and understanding landscape drivers of MeHg exposure. Further research is suggested to critically evaluate the use of keratinized external tissues to measure MeHg bioaccumulation, particularly for less-well studied wildlife such as reptiles and terrestrial mammals. Suggested methods are provided to effectively use wildlife for quantifying patterns and drivers of MeHg bioaccumulation over time and space, as well as for assessing the potential risk and toxicological effects of MeHg on wildlife.

Isotopic niche partitioning in two sympatric howler monkey species

OBJECTIVES

Ecological similarity between species can lead to interspecific trophic competition. However, when ecologically similar species coexist, they may differ in foraging strategies and habitat use, which can lead to niche partitioning. As the body tissues of consumers contain a stable isotope signature that reflects the isotopic composition of their diet, stable isotope analysis is a useful tool to study feeding behavior. We measured the isotopic niche width, which is a proxy for trophic niche width, of mantled (Alouatta palliata) and black (A. pigra) howler monkeys. Specifically, studied populations in allopatry and sympatry to assess whether these species showed niche partitioning.

MATERIALS AND METHODS

Between 2008 and 2012, we collected hair samples from 200 subjects (113 black and 87 mantled howler monkeys) and used continuous flow isotope ratio mass spectrometry to estimate δ¹³ C and δ¹⁵ N. We described the isotopic niche width of each species in allopatry and sympatry with the Bayesian estimation of the standard ellipse areas.

RESULTS

In allopatry, isotopic niche width and isotopic variation were similar in both species. In sympatry, black howler monkeys had a significantly broader isotopic niche, which was mainly determined by high δ¹⁵ N values, and included the majority of mantled howler monkeys' isotopic niche. The isotopic niche of mantled howler monkeys did not differ between sympatry and allopatry.

CONCLUSIONS

The coexistence of these ecologically similar species may be linked to trophic niche adjustments by one species, although the particular features of such adjustments (e.g., dietary, spatial, or sensory partitioning) remain to be addressed.

Intra-specific Niche Partitioning in Antarctic Fur Seals, Arctocephalus gazella

Competition for resources within a population can lead to niche partitioning between sexes, throughout ontogeny and among individuals, allowing con-specifics to co-exist. We aimed to quantify such partitioning in Antarctic fur seals, Arctocephalus gazella, breeding at South Georgia, which hosts ~95% of the world’s population. Whiskers were collected from 20 adult males and 20 adult females and stable isotope ratios were quantified every 5 mm along the length of each whisker. Nitrogen isotope ratios (δ¹⁵N) were used as proxies for trophic position and carbon isotope ratios (δ¹³C) indicated foraging habitat. Sexual segregation was evident: δ¹³C values were significantly lower in males than females, indicating males spent more time foraging south of the Polar Front in maritime Antarctica. In males δ¹³C values declined with age, suggesting males spent more time foraging south throughout ontogeny. In females δ¹³C values revealed two main foraging strategies: 70% of females spent most time foraging south of the Polar Front and had similar δ¹⁵N values to males, while 30% of females spent most time foraging north of the Polar Front and had significantly higher δ¹⁵N values. This niche partitioning may relax competition and ultimately elevate population carrying capacity with implications for ecology, evolution and conservation.

Using stable isotopes of plasma, red blood cells, feces, and feathers to assess mature-forest bird diet during the post-fledging period

Post-fledging use of early successional habitat by mature-forest birds is well-documented, but the important trophic factors driving this association remain poorly understood. We used stable isotope analysis of plasma, red blood cells, feces, and feathers to determine foraging preferences of three mature-forest bird species captured in 8-year-old clearcuts during the post-fledging period. We did not identify a significant source contribution in any consumer tissue combination using MixSIAR posterior distributions, but the position of consumer tissues in bivariate isotope mixing space suggested that all three mature-forest bird species acted as generalist insectivores during the post-fledging period. Furthermore, estimates of the proportional contribution of fruit to the overall diet were <0.13 for all Scarlet Tanager (Piranga olivacea (J.F. Gmelin, 1789)) tissue types, despite observational evidence of frugivory. We observed significant differentiation in core-niche-space estimates between the two obligate insectivores (Worm-eating Warbler (Helmitheros vermivorum (J.F. Gmelin, 1789)) and Ovenbird (Seiurus aurocapilla (Linnaeus, 1766))), suggesting that clearcuts provided adequate habitat to support the different foraging strategies and invertebrate preferences of both species. By using tissues with short turnover rates to address post-fledging trophic associations of mature-forest birds, we provide a comparison of isotopic values of multiple consumer tissue types in this context.

Dietary variation in Icelandic arctic fox (Vulpes lagopus) over a period of 30 years assessed through stable isotopes

Identifying resources driving long-term trends in predators is important to understand ecosystem changes and to manage populations in the context of conservation or control. The arctic fox population in Iceland has increased steadily over a period of 30 years, an increase that has been attributed to an overall increase in food abundance. We hypothesized that increasing populations of geese or seabirds were driving this growth. We analyzed stable isotopes in a long-term series of collagen samples to determine the role of these different resources. The isotopic signatures of arctic foxes differed consistently between coastal and inland habitats. While δ¹⁵N displayed a non-linear change over time with a slight increase in the first part of the period followed by a decline in both habitats, δ¹³C was stable. Stable isotope mixing models suggested that marine resources and rock ptarmigan were the most important dietary sources, with marine resources dominating in coastal habitats and rock ptarmigan being more important inland. Our results suggest that seabirds may have been driving the arctic fox population increase. The rapidly increasing populations of breeding geese seem to have played a minor role in arctic fox population growth, as rock ptarmigan was the most important terrestrial resource despite a considerable decrease in their abundance during recent decades. This study shows that a long-term population trend in a generalist predator may have occurred without a pronounced change in main dietary resources, despite ongoing structural changes in the food web, where one species of herbivorous birds increased and another decreased.

Body size and diet–related morphological variation of bats over the past 65 years in China

We examined both historical (1960s) and recent (2017) specimens of an insectivorous bat species (Hipposideros armiger) and a phytophagous bat (Rousettus leschenaultii) from the same latitudinal range to explore phenotypic responses to environmental change in China over the past 65 years. Hipposideros armiger exhibited significant increases in forearm length and three diet-related cranial traits, as well as carbon and nitrogen stable isotope composition, suggesting that modern H. armiger must travel farther for food and may now use different food resources. In contrast, R. leschenaultii showed no change in forearm length but displayed significant increases in diet-related cranial traits. This study provides evidence for differential responses to recent environmental changes in bat species with different diets. The changes in diet-related traits of the two species and the forearm length change on the insectivorous bats suggest that recent phenotypic changes may be adaptions to land-use changes rather than to climate change.

Exposure to environmental radionuclides is associated with altered metabolic and immunity pathways in a wild rodent

Wildlife inhabiting environments contaminated by radionuclides face putative detrimental effects of exposure to ionizing radiation, with biomarkers such as an increase in DNA damage and/or oxidative stress commonly associated with radiation exposure. To examine the effects of exposure to radiation on gene expression in wildlife, we conducted a de novo RNA sequencing study of liver and spleen tissues from a rodent, the bank vole Myodes glareolus. Bank voles were collected from the Chernobyl Exclusion Zone (CEZ), where animals were exposed to elevated levels of radionuclides, and from uncontaminated areas near Kyiv, Ukraine. Counter to expectations, we did not observe a strong DNA damage response in animals exposed to radionuclides, although some signs of oxidative stress were identified. Rather, exposure to environmental radionuclides was associated with upregulation of genes involved in lipid metabolism and fatty acid oxidation in the livers - an apparent shift in energy metabolism. Moreover, using stable isotope analysis, we identified that fur from bank voles inhabiting the CEZ had enriched isotope values of nitrogen: such an increase is consistent with increased fatty acid metabolism, but also could arise from a difference in diet or habitat between the CEZ and elsewhere. In livers and spleens, voles inhabiting the CEZ were characterized by immunosuppression, such as impaired antigen processing, and activation of leucocytes involved in inflammatory responses. In conclusion, exposure to low dose environmental radiation impacts pathways associated with immunity and lipid metabolism, potentially as a stress-induced coping mechanism.

Human-modified landscapes alter mammal resource and habitat use and trophic structure

The broad negative consequences of habitat degradation on biodiversity have been studied, but the complex effects of natural-agricultural landscape matrices remain poorly understood. Here we used stable carbon and nitrogen isotopes to detect changes in mammal resource and habitat use and trophic structure between preserved areas and human-modified landscapes (HMLs) in a biodiversity hot spot in South America. We classified mammals into trophic guilds and compared resource use (in terms of C3- and C4-derived carbon), isotopic niches, and trophic structure across the 2 systems. In HMLs, approximately one-third of individuals fed exclusively on items from the agricultural matrix (C4), while in preserved areas, ∼68% depended on forest remnant resources (C3). Herbivores, omnivores, and carnivores were the guilds that most incorporated C4 carbon in HMLs. Frugivores maintained the same resource use between systems (C3 resources), while insectivores showed no significant difference. All guilds in HMLs except insectivores presented larger isotopic niches than those in preserved areas. We observed a complex trophic structure in preserved areas, with increasing δ15N values from herbivores to insectivores and carnivores, differing from that in HMLs. This difference is partially explained by species loss and turnover and mainly by the behavioral plasticity of resilient species that use nitrogen-enriched food items. We concluded that the landscape cannot be seen as a habitat/nonhabitat dichotomy because the agricultural landscape matrix in HMLs provides mammal habitat and opportunities for food acquisition. Thus, favorable management of the agricultural matrix and slowing the conversion of forests to agriculture are important for conservation in this region.

Characterizing stable isotope relationships between green turtle (Chelonia mydas) skin and unhatched eggs

RATIONALE

Stable isotope analysis is used to understand the foraging habits and movements of a diverse set of organisms. Variability in stable isotope ratios among tissues derived from the same animal makes it difficult to compare data among study results in which different tissue types are evaluated. Isotopic relationships between two green turtle (Chelonia mydas) tissue types, skin and unhatched egg contents are unknown. Similarly, few data exist to evaluate the influence of time elapsed after oviposition (as a proxy for decomposition) on isotopic variability among unhatched eggs within the same nest.

METHODS

Skin and unhatched egg contents were collected from 69 adult female green turtles and associated nests at the Archie Carr National Wildlife Refuge in Florida, USA. Values of δ¹³ C, δ¹⁵ N, and δ³⁴ S were measured for both tissue types using a continuous flow isotope ratio mass spectrometer. Standardized major-axis (SMA) regression was used to generate conversion equations of carbon, nitrogen, and sulfur isotope ratios between the two tissue types. Model selection frameworks consisting of single-factor linear models were employed per isotope ratio to assess how egg time-in-nest affected intraclutch isotopic variability.

RESULTS

Conversion equations for all three isotope ratios indicated significant relationships between skin and unhatched egg values, although model fits were lower than found in some studies examining similar patterns in other marine turtle species. The probability of increased intraclutch variability was significantly higher among eggs collected at longer intervals after deposition.

CONCLUSIONS

This study reports the first-ever δ¹³ C and δ¹⁵ N conversion equations between skin and unhatched eggs for green turtles, and the first δ³⁴ S conversion equation for any marine turtle species. SMA regression was used to directly convert tissue values bidirectionally, unlike equations generated using ordinary least-squares regression. Issues with increased intraclutch variability at later excavation dates highlight the importance of collecting unhatched eggs as soon as possible after hatchling emergence.

Immune state is associated with natural dietary variation in wild mice Mus musculus domesticus

The ability, propensity and need to mount an immune response vary both among individuals and within a single individual over time.A wide array of parameters has been found to influence immune state in carefully controlled experiments, but we understand much less about which of these parameters are important in determining immune state in wild populations.Diet can influence immune responses, for example when nutrient availability is limited. We therefore predict that natural dietary variation will play a role in modulating immune state, but this has never been tested.We measured carbon and nitrogen stable isotope ratios in an island population of house mice Mus musculus domesticus as an indication of dietary variation, and the expression of a range of immune-related genes to represent immune state.After accounting for potential confounding influences such as age, sex and helminth load, we found a significant association between carbon isotope ratio and levels of immune activity in the mesenteric lymph nodes, particularly in relation to the inflammatory response.This association demonstrates the important interplay between diet and an animal's response to immune challenges, and therefore potentially its susceptibility to disease. A plain language summary is available for this article.

The Importance of Isotopic Turnover for Understanding Key Aspects of Animal Ecology and Nutrition

Stable isotope-based methods have proved to be immensely valuable for ecological studies ranging in focus from animal movements to species interactions and community structure. Nevertheless, the use of these methods is dependent on assumptions about the incorporation and turnover of isotopes within animal tissues, which are oftentimes not explicitly acknowledged and vetted. Thus, the purpose of this review is to provide an overview of the estimation of stable isotope turnover rates in animals, and to highlight the importance of these estimates for ecological studies in terrestrial, freshwater, and marine systems that may use a wide range of stable isotopes. Specifically, we discuss 1) the factors that contribute to variation in turnover among individuals and across species, which influences the use of stable isotopes for diet reconstructions, 2) the differences in turnover among tissues that underlie so-called ‘isotopic clocks’, which are used to estimate the timing of dietary shifts, and 3) the use of turnover rates to estimate nutritional requirements and reconstruct histories of nutritional stress from tissue isotope signatures. As we discuss these topics, we highlight recent works that have effectively used estimates of turnover to design and execute informative ecological studies. Our concluding remarks suggest several steps that will improve our understanding of isotopic turnover and support its integration into a wider range of ecological studies.

Predation risk and space use of a declining Dall sheep (Ovis dalli dalli) population

The abundance of ungulate populations may fluctuate in response to several limiting factors, including climate, diseases, and predation. In the northern Richardson Mountains, Canada, Dall sheep (Ovis dalli dalli) have undergone a major decline in the past decades and predation by grizzly bears (Ursus arctos) and wolves (Canis lupus) was suspected as a leading cause. To better understand the relationship between these three species located in this rugged and remote ecosystem, we relied on a combination of indirect methods. We investigated the apparent role of predation on the Dall sheep population using spatial ecology and stable isotopes. We examined seasonal variation in predation risk, focusing on how it may affect Dall sheep habitat use and sexual segregation, and we evaluated the proportion of Dall sheep in the diet of both predators using stable isotopes. The movements of the three species were monitored by satellite telemetry. Dall sheep habitat use patterns were analyzed using topographical features, greenness index, land cover, and apparent predation risk. The diets of grizzly bears and wolves were examined using a Bayesian mixing model for carbon and nitrogen stable isotopes. We found that Dall sheep habitat use varied seasonally, with different patterns for ewes and rams. Exposure to grizzly bear risk was higher for rams during summer, while ewes were further exposed to wolf apparent predation risk during winter. The importance of safe habitats for ewes was reflected in space use patterns. Stable isotopes analyses suggested that the diet of grizzly bears was largely from animal sources, with mountain mammals comprising about one quarter. Wolves mostly fed on both aquatic browsers and mountain mammals. Diet variation between individual predators suggested that some individuals specialized on mountain mammals, likely including Dall sheep. We conclude that grizzly bear and wolf apparent predation risk are important in driving Dall sheep habitat use and play a role in sexual segregation. Overall, this study presents an innovative combination of indirect methods that could be applied elsewhere to better understand predator-prey dynamics in remote ecosystems.

Marine subsidies likely cause gigantism of iguanas in the Bahamas

We utilized natural experiment opportunities presented by differential conditions (presence/absence of seabirds and invasive species) on cays in the Bahamas to study whether interisland variations in food resources contributed to gigantism in Allen Cays Rock Iguanas (Cyclura cychlura inornata). We analyzed the stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotope values from iguana tissues and resources from each island food web to test the predictions that (1) food webs on islands with seabirds exhibit the influence of marine subsidies from seabird guano, whereas those from non-seabird islands do not, and (2) size differences in iguanas among cays were due to either (a) supplemental food availability from mice and/or seabird carcasses killed by barn owls (Tyto alba) and/or (b) access to more nutrient-rich vegetation fertilized by seabird guano. Food web components from the seabird island (Allen Cay) had 5-9‰ higher δ¹⁵N values than those on the other cays and Allen Cay plants contained nearly two times more nitrogen. Bayesian stable isotope mixing models indicated that C₃ plants dominated iguana diets on all islands and showed no evidence for consumption of mice or shearwaters. The iguanas on Allen Cay were ~ 2 times longer (48.3 ± 11.6 cm) and ~ 6 times heavier (5499 ± 2847 g) than iguanas on other cays and this was likely from marine-derived subsidies from seabird guano which caused an increase in nitrogen concentration in the plants and a resultant increase in the δ¹⁵N values across the entire food web relative to non-seabird islands.

The use of hair traps as a complementary method in mammal ecology studies

This study describes the use of hair traps as a complementary method to obtain samples for stable isotope analysis from medium- and large-sized mammals. We sampled three protected areas within the Atlantic Forest, Brazil. Traps formed an enclosure of ~16 m2 composed of two barbed-wire strands at different heights, baited with corn, salt, fruits and cinnamon powder. Samples were identified using hair microstructure. We identified 11 species – four globally and six nationally threatened – of which 63.6% were frugivorous. We found high species richness with a small sampling effort, indicating that hair traps can prove useful for isotopic ecology and other applied ecological studies.