101
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Abstract
Using real-time imaging of circadian gene expression, a new study reveals how a light pulse briefly desynchronizes clock neurons in the fly brain before they settle into a new, synchronized daily rhythm.
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Affiliation(s)
- Cristina Mazuski
- Department of Biology, Washington University, St. Louis, MO 63130, USA
| | - Erik D Herzog
- Department of Biology, Washington University, St. Louis, MO 63130, USA.
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102
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Identification of Light-Sensitive Phosphorylation Sites on PERIOD That Regulate the Pace of Circadian Rhythms in Drosophila. Mol Cell Biol 2015; 36:855-70. [PMID: 26711257 DOI: 10.1128/mcb.00682-15] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Accepted: 12/02/2015] [Indexed: 11/20/2022] Open
Abstract
The main components regulating the pace of circadian (≅24 h) clocks in animals are PERIOD (PER) proteins, transcriptional regulators that undergo daily changes in levels and nuclear accumulation by means of complex multisite phosphorylation programs. In the present study, we investigated the function of two phosphorylation sites, at Ser826 and Ser828, located in a putative nuclear localization signal (NLS) on the Drosophila melanogaster PER protein. These sites are phosphorylated by DOUBLETIME (DBT; Drosophila homolog of CK1δ/ε), the key circadian kinase regulating the daily changes in PER stability and phosphorylation. Mutant flies in which phosphorylation at Ser826/Ser828 is blocked manifest behavioral rhythms with periods slightly longer than 1 h and with altered temperature compensation properties. Intriguingly, although phosphorylation at these sites does not influence PER stability, timing of nuclear entry, or transcriptional autoinhibition, the phospho-occupancy at Ser826/Ser828 is rapidly stimulated by light and blocked by TIMELESS (TIM), the major photosensitive clock component in Drosophila and a crucial binding partner of PER. Our findings identify the first phosphorylation sites on core clock proteins that are acutely regulated by photic cues and suggest that some phosphosites on PER proteins can modulate the pace of downstream behavioral rhythms without altering central aspects of the clock mechanism.
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103
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A Stochastic Burst Follows the Periodic Morning Peak in Individual Drosophila Locomotion. PLoS One 2015; 10:e0140481. [PMID: 26528813 PMCID: PMC4631454 DOI: 10.1371/journal.pone.0140481] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Accepted: 09/25/2015] [Indexed: 02/04/2023] Open
Abstract
Coupling between cyclically varying external light and an endogenous biochemical oscillator known as the circadian clock, modulates a rhythmic pattern with two prominent peaks in the locomotion of Drosophila melanogaster. A morning peak appears around the time lights turn on and an evening peak appears just before lights turn off. The close association between the peaks and the external 12:12 hour light/dark photoperiod means that respective morning and evening peaks of individual flies are well-synchronized in time and, consequently, feature prominently in population-averaged data. Here, we report on a brief but strong stochastic burst in fly activity that, in contrast to morning and evening peaks, is detectable only in single fly recordings. This burst was observed across 3 wild-type strains of Drosophila melanogaster. In a single fly recording, the burst is likely to appear once randomly within 0.5–5 hours after lights turn on, last for only 2–3 minutes and yet show 5 times greater activity compared to the maximum of morning peak with data binned in 3 minutes. Owing to its variable timing and short duration, the burst is virtually undetectable in population-averaged data. We use a locally-built illumination system to study the burst and find that its incidence in a population correlates with light intensity, with ~85% of control flies showing the behavior at 8000 lux (1942 μW/cm2). Consistent with that finding, several mutant flies with impaired vision show substantially reduced frequency of the burst. Additionally, we find that genetic ablation of the clock has insignificant effect on burst frequency. Together, these data suggest that the pronounced burst is likely generated by a light-activated circuit that is independent of the circadian clock.
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104
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Circadian Activators Are Expressed Days before They Initiate Clock Function in Late Pacemaker Neurons from Drosophila. J Neurosci 2015; 35:8662-71. [PMID: 26041931 DOI: 10.1523/jneurosci.0250-15.2015] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Circadian pacemaker neurons in the Drosophila brain control daily rhythms in locomotor activity. These pacemaker neurons can be subdivided into early or late groups depending on whether rhythms in period (per) and timeless (tim) expression are initiated at the first instar (L1) larval stage or during metamorphosis, respectively. Because CLOCK-CYCLE (CLK-CYC) heterodimers initiate circadian oscillator function by activating per and tim transcription, a Clk-GFP transgene was used to mark when late pacemaker neurons begin to develop. We were surprised to see that CLK-GFP was already expressed in four of five clusters of late pacemaker neurons during the third instar (L3) larval stage. CLK-GFP is only detected in postmitotic neurons from L3 larvae, suggesting that these four late pacemaker neuron clusters are formed before the L3 larval stage. A GFP-cyc transgene was used to show that CYC, like CLK, is also expressed exclusively in pacemaker neurons from L3 larval brains, demonstrating that CLK-CYC is not sufficient to activate per and tim in late pacemaker neurons at the L3 larval stage. These results suggest that most late pacemaker neurons develop days before novel factors activate circadian oscillator function during metamorphosis.
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105
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Herrero A, Romanowski A, Meelkop E, Caldart CS, Schoofs L, Golombek DA. Pigment-dispersing factor signaling in the circadian system ofCaenorhabditis elegans. GENES BRAIN AND BEHAVIOR 2015; 14:493-501. [DOI: 10.1111/gbb.12231] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Revised: 06/18/2015] [Accepted: 06/24/2015] [Indexed: 11/29/2022]
Affiliation(s)
- A. Herrero
- Laboratorio de Cronobiología, Departamento de Ciencia y Tecnología; Universidad Nacional de Quilmes; Buenos Aires Argentina
| | - A. Romanowski
- Laboratorio de Cronobiología, Departamento de Ciencia y Tecnología; Universidad Nacional de Quilmes; Buenos Aires Argentina
| | - E. Meelkop
- Animal Physiology and Neurobiology Section, Department of Biology; KU Leuven; Leuven Belgium
| | - C. S. Caldart
- Laboratorio de Cronobiología, Departamento de Ciencia y Tecnología; Universidad Nacional de Quilmes; Buenos Aires Argentina
| | - L. Schoofs
- Animal Physiology and Neurobiology Section, Department of Biology; KU Leuven; Leuven Belgium
| | - D. A. Golombek
- Laboratorio de Cronobiología, Departamento de Ciencia y Tecnología; Universidad Nacional de Quilmes; Buenos Aires Argentina
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106
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Bosler O, Girardet C, Franc JL, Becquet D, François-Bellan AM. Structural plasticity of the circadian timing system. An overview from flies to mammals. Front Neuroendocrinol 2015; 38:50-64. [PMID: 25703789 DOI: 10.1016/j.yfrne.2015.02.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/01/2014] [Revised: 02/10/2015] [Accepted: 02/11/2015] [Indexed: 12/22/2022]
Abstract
The circadian timing system orchestrates daily variations in physiology and behavior through coordination of multioscillatory cell networks that are highly plastic in responding to environmental changes. Over the last decade, it has become clear that this plasticity involves structural changes and that the changes may be observed not only in central brain regions where the master clock cells reside but also in clock-controlled structures. This review considers experimental data in invertebrate and vertebrate model systems, mainly flies and mammals, illustrating various forms of structural circadian plasticity from cellular to circuit-based levels. It highlights the importance of these plastic events in the functional adaptation of the clock to the changing environment.
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Affiliation(s)
- Olivier Bosler
- Aix-Marseille Université, CNRS, CRN2M, UMR 7286, Faculté de médecine, secteur nord, Boulevard Pierre Dramard, CS 80011, F-13344 Marseille cedex 15, France.
| | - Clémence Girardet
- Aix-Marseille Université, CNRS, CRN2M, UMR 7286, Faculté de médecine, secteur nord, Boulevard Pierre Dramard, CS 80011, F-13344 Marseille cedex 15, France.
| | - Jean-Louis Franc
- Aix-Marseille Université, CNRS, CRN2M, UMR 7286, Faculté de médecine, secteur nord, Boulevard Pierre Dramard, CS 80011, F-13344 Marseille cedex 15, France
| | - Denis Becquet
- Aix-Marseille Université, CNRS, CRN2M, UMR 7286, Faculté de médecine, secteur nord, Boulevard Pierre Dramard, CS 80011, F-13344 Marseille cedex 15, France
| | - Anne-Marie François-Bellan
- Aix-Marseille Université, CNRS, CRN2M, UMR 7286, Faculté de médecine, secteur nord, Boulevard Pierre Dramard, CS 80011, F-13344 Marseille cedex 15, France
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107
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Tabuchi M, Lone SR, Liu S, Liu Q, Zhang J, Spira AP, Wu MN. Sleep interacts with aβ to modulate intrinsic neuronal excitability. Curr Biol 2015; 25:702-712. [PMID: 25754641 PMCID: PMC4366315 DOI: 10.1016/j.cub.2015.01.016] [Citation(s) in RCA: 131] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Revised: 12/05/2014] [Accepted: 01/06/2015] [Indexed: 12/11/2022]
Abstract
BACKGROUND Emerging data suggest an important relationship between sleep and Alzheimer's disease (AD), but how poor sleep promotes the development of AD remains unclear. RESULTS Here, using a Drosophila model of AD, we provide evidence suggesting that changes in neuronal excitability underlie the effects of sleep loss on AD pathogenesis. β-amyloid (Aβ) accumulation leads to reduced and fragmented sleep, while chronic sleep deprivation increases Aβ burden. Moreover, enhancing sleep reduces Aβ deposition. Increasing neuronal excitability phenocopies the effects of reducing sleep on Aβ, and decreasing neuronal activity blocks the elevated Aβ accumulation induced by sleep deprivation. At the single neuron level, we find that chronic sleep deprivation, as well as Aβ expression, enhances intrinsic neuronal excitability. Importantly, these data reveal that sleep loss exacerbates Aβ-induced hyperexcitability and suggest that defects in specific K(+) currents underlie the hyperexcitability caused by sleep loss and Aβ expression. Finally, we show that feeding levetiracetam, an anti-epileptic medication, to Aβ-expressing flies suppresses neuronal excitability and significantly prolongs their lifespan. CONCLUSIONS Our findings directly link sleep loss to changes in neuronal excitability and Aβ accumulation and further suggest that neuronal hyperexcitability is an important mediator of Aβ toxicity. Taken together, these data provide a mechanistic framework for a positive feedback loop, whereby sleep loss and neuronal excitation accelerate the accumulation of Aβ, a key pathogenic step in the development of AD.
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Affiliation(s)
- Masashi Tabuchi
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Shahnaz R Lone
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Sha Liu
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Qili Liu
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Julia Zhang
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Adam P Spira
- Department of Mental Health, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Mark N Wu
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21205, USA; Department of Neuroscience, Johns Hopkins University, Baltimore, MD 21205, USA.
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108
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Abstract
The new field of “Computational Ethology” is made possible by advances in technology, mathematics, and engineering that allow scientists to automate the measurement and the analysis of animal behavior. We explore the opportunities and long-term directions of research in this area.
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Affiliation(s)
- David J Anderson
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA.
| | - Pietro Perona
- Division of Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
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109
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Bellemer A. Thermotaxis, circadian rhythms, and TRP channels in Drosophila. Temperature (Austin) 2015; 2:227-43. [PMID: 27227026 PMCID: PMC4843867 DOI: 10.1080/23328940.2015.1004972] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Revised: 12/31/2014] [Accepted: 01/01/2015] [Indexed: 01/24/2023] Open
Abstract
The fruit fly Drosophila melanogaster is a poikilothermic organism that must detect and respond to both fine and coarse changes in environmental temperature in order maintain optimal body temperature, synchronize behavior to daily temperature fluctuations, and to avoid potentially injurious environmental hazards. Members of the Transient Receptor Potential (TRP) family of cation channels are well known for their activation by changes in temperature and their essential roles in sensory transduction in both invertebrates and vertebrates. The Drosophila genome encodes 13 TRP channels, and several of these have key sensory transduction and modulatory functions in allowing larval and adult flies to make fine temperature discriminations to attain optimal body temperature, detect and avoid large environmental temperature fluctuations, and make rapid escape responses to acutely noxious stimuli. Drosophila use multiple, redundant signaling pathways and neural circuits to execute these behaviors in response to both increases and decreases in temperature of varying magnitudes and time scales. A plethora of powerful molecular and genetic tools and the fly's simple, well-characterized nervous system have given Drosophila neurobiologists a powerful platform to study the cellular and molecular mechanisms of TRP channel function and how these mechanisms are conserved in vertebrates, as well as how these channels function within sensorimotor circuits to generate both simple and complex thermosensory behaviors.
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Key Words
- A1, 1st Antennal Segment
- A2, 2nd Antennal Segment
- A3, 3rd Antennal Segment
- AC, Anterior Cell
- AL, Antennal Lobe
- AR, Arista
- Clk, Clock protein
- Cry, Cryptochrome
- Cyc, Cycle protein
- DN1, DN2, DN3, Dorsal Neuron group 1, 2, 3
- Dbt, Double Time protein
- Drosophila melanogaster
- GFP, Green Fluorescent Protein
- GPCR, G Protein-Coupled Receptor
- LN, Lateral Neuron
- LNd, Dorsal Lateral Neuron
- LNv, Ventral Lateral Neuron
- LPN, Lateral Posterior Neuron
- NEL, Nocifensive Escape Locomotion
- PAP, Proximal Antennal Protocerebrum
- PDF, Pigment Dispersing Factor
- PKD1, Polycistic Kidney Disease 1
- PLC, Phospholipase C
- Per, Period protein
- RNAi, RNA interference
- SAC, Sacculus
- SLPR, Superior Lateral Protocerebrum
- SOG, Suboesophageal Ganglion
- TRP channels
- TRP, Transient Receptor Potential
- TRPA, Transient Receptor Potential, group A (ankyrin repeat)
- TRPA1
- TRPC, Transient Receptor Potential, group C (canonical)
- TRPL, TRP-Like
- TRPM, Transient Receptor Potential, group M (melastatin)
- TRPP, Transient Receptor Potential, group P (polycystic)
- TRPV, Transient Receptor Potential, group V (vanilloid)
- Tim, Timeless protein
- VFP, Venus Fluorescent Protein
- circadian rhythms
- lLNv, Ventral Lateral Neuron, large cell body
- mdIV, Multidendritic Neuron, class IV
- nociception
- sLNv, Ventral Lateral Neuron, small cell body
- thermoTRP, thermosensitive TRP channel
- thermosensation
- thermotaxis
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Affiliation(s)
- Andrew Bellemer
- Department of Biology; Appalachian State University ; Boone, NC, USA
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110
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Hermann-Luibl C, Helfrich-Förster C. Clock network in Drosophila. CURRENT OPINION IN INSECT SCIENCE 2015; 7:65-70. [PMID: 32846682 DOI: 10.1016/j.cois.2014.11.003] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2014] [Revised: 11/14/2014] [Accepted: 11/19/2014] [Indexed: 06/11/2023]
Abstract
The circadian clock consists of a network of peptidergic neurons in the brain of all animals. The function of this peptidergic network has been largely revealed in the fruit fly Drosophila melanogaster due to the relatively few well characterized clock neurons and because these neurons can be genetically manipulated. Here we review the neuronal organization of the circadian network and the role of individual clock neurons and neuropeptides in it.
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Affiliation(s)
- Christiane Hermann-Luibl
- Department of Neurobiology and Genetics, Theodor-Boveri Institute, Biocenter, University of Würzburg, Germany
| | - Charlotte Helfrich-Förster
- Department of Neurobiology and Genetics, Theodor-Boveri Institute, Biocenter, University of Würzburg, Germany.
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111
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Maguire SE, Sehgal A. Heating and cooling the Drosophila melanogaster clock. CURRENT OPINION IN INSECT SCIENCE 2015; 7:71-75. [PMID: 26120562 PMCID: PMC4480787 DOI: 10.1016/j.cois.2014.12.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Most biological phenomena are under control of a circuit known as the 'molecular circadian clock.' Over the past forty years of research in Drosophila melanogaster, studies have made significant advances in our understanding of the molecular timing mechanism of this circuit, which is determined by a core inhibitory feedback loop. While the timing mechanism of the molecular circadian clock is endogenous, it is well established that exogenous cues such as light and temperature modulate its timing. In the following article, we summarize our current understanding of how temperature interacts with the molecular circadian clock in adult Drosophila.
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Affiliation(s)
- Sarah E. Maguire
- Department of Neuroscience, University of Pennsylvania School of Medicine; Philadelphia, Pennsylvania, 19104; USA
| | - Amita Sehgal
- Department of Neuroscience, University of Pennsylvania School of Medicine; Philadelphia, Pennsylvania, 19104; USA
- Howard Hughes Medical Institute; Chevy Chase, Maryland, 20815; USA
- Department of Cell and Molecular Biology, University of Pennsylvania School of Medicine; Philadelphia, Pennsylvania, 19104; USA
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112
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Tataroglu O, Emery P. The molecular ticks of the Drosophila circadian clock. CURRENT OPINION IN INSECT SCIENCE 2015; 7:51-57. [PMID: 26120561 PMCID: PMC4480617 DOI: 10.1016/j.cois.2015.01.002] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Drosophila is a powerful model to understand the mechanisms underlying circadian rhythms. The Drosophila molecular clock is comprised of transcriptional feedback loops. The expressions of the critical transcriptional activator CLK and its repressors PER and TIM are under tight transcriptional control. However, posttranslational modification of these proteins and regulation of their stability are critical to their function and to the generation of 24-hr period rhythms. We review here recent progress made in our understanding of PER, TIM and CLK posttranslational control. We also review recent studies that are uncovering the importance of novel regulatory mechanisms that affect mRNA stability and translation of circadian pacemaker proteins and their output.
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113
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Kobelková A, Závodská R, Sauman I, Bazalová O, Dolezel D. Expression of clock genes period and timeless in the central nervous system of the Mediterranean flour moth, Ephestia kuehniella. J Biol Rhythms 2015; 30:104-16. [PMID: 25637625 DOI: 10.1177/0748730414568430] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Homologous circadian genes are found in all insect clocks, but their contribution to species-specific circadian timing systems differs. The aim of this study was to extend research within Lepidoptera to gain a better understanding of the molecular mechanism underlying circadian clock plasticity and evolution. The Mediterranean flour moth, Ephestia kuehniella (Pyralidae), represents a phylogenetically ancestral lepidopteran species. We have identified circadian rhythms in egg hatching, adult emergence, and adult locomotor activity. Cloning full-length complementary DNAs and further characterization confirmed one copy of period and timeless genes in both sexes. Both per and tim transcripts oscillate in their abundance in E. kuehniella heads under light-dark conditions. PER-like immunoreactivity (PER-lir) was observed in nuclei and cytoplasm of most neurons in the central brain, the ventral part of subesophageal complex, the neurohemal organs, the optic lobes, and eyes. PER-lir in photoreceptor nuclei oscillated during the day with maximal intensity in the light phase of the photoperiodic regime and lack of a signal in the middle of the dark phase. Expression patterns of per and tim messenger RNAs (mRNAs) were revealed in the identical location as the PER-lir was detected. In the photoreceptors, a daily rhythm in the intensity of expression of both per mRNA and tim mRNA was found. These findings suggest E. kuehniella as a potential lepidopteran model for circadian studies.
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Affiliation(s)
- Alena Kobelková
- Institute of Entomology, Biology Centre CAS Ceske Budejovice, Czech Republic Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Radka Závodská
- Institute of Entomology, Biology Centre CAS Ceske Budejovice, Czech Republic Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic Faculty of Education, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Ivo Sauman
- Institute of Entomology, Biology Centre CAS Ceske Budejovice, Czech Republic Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Olga Bazalová
- Institute of Entomology, Biology Centre CAS Ceske Budejovice, Czech Republic Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - David Dolezel
- Institute of Entomology, Biology Centre CAS Ceske Budejovice, Czech Republic Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
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114
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Cao W, Edery I. A novel pathway for sensory-mediated arousal involves splicing of an intron in the period clock gene. Sleep 2015; 38:41-51. [PMID: 25325457 DOI: 10.5665/sleep.4322] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Accepted: 05/17/2014] [Indexed: 01/07/2023] Open
Abstract
STUDY OBJECTIVES D. melanogaster is an excellent animal model to study how the circadian (≅24-h) timing system and sleep regulate daily wake-sleep cycles. Splicing of a temperature-sensitive 3'-terminal intron (termed dmpi8) from the circadian clock gene period (per) regulates the distribution of daily activity in Drosophila. The role of dmpi8 splicing on daily behavior was further evaluated by analyzing sleep. DESIGN Transgenic flies of the same genetic background but expressing either a wild-type recombinant per gene or one where the efficiency of dmpi8 splicing was increased were exposed to different temperatures in daily light-dark cycles and sleep parameters measured. In addition, transgenic flies were briefly exposed to a variety of sensory-mediated stimuli to measure arousal responses. RESULTS Surprisingly, we show that the effect of dmpi8 splicing on daytime activity levels does not involve a circadian role for per but is linked to adjustments in sensory-dependent arousal and sleep behavior. Genetically altered flies with high dmpi8 splicing efficiency remain aroused longer following short treatments with light and non-photic cues such as mechanical stimulation. CONCLUSIONS We propose that the thermal regulation of dmpi8 splicing acts as a temperature-calibrated rheostat in a novel arousal mechanism, so that on warm days the inefficient splicing of the dmpi8 intron triggers an increase in quiescence by decreasing sensory-mediated arousal, thus ensuring flies minimize being active during the hot midday sun despite the presence of light in the environment, which is usually a strong arousal cue for diurnal animals.
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Affiliation(s)
- Weihuan Cao
- Rutgers University, Center for Advanced Biotechnology and Medicine, Piscataway, NJ
| | - Isaac Edery
- Department of Molecular Biology and Biochemistry, Rutgers University, Center for Advanced Biotechnology and Medicine, Piscataway, NJ
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115
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Abstract
Circadian rhythms are daily endogenous oscillations of behavior, metabolism, and physiology. At a molecular level, these oscillations are generated by transcriptional-translational feedback loops composed of core clock genes. In turn, core clock genes drive the rhythmic accumulation of downstream outputs-termed clock-controlled genes (CCGs)-whose rhythmic translation and function ultimately underlie daily oscillations at a cellular and organismal level. Given the circadian clock's profound influence on human health and behavior, considerable efforts have been made to systematically identify CCGs. The recent development of next-generation sequencing has dramatically expanded our ability to study the expression, processing, and stability of rhythmically expressed mRNAs. Nevertheless, like any new technology, there are many technical issues to be addressed. Here, we discuss considerations for studying circadian rhythms using genome scale transcriptional profiling, with a particular emphasis on RNA sequencing. We make a number of practical recommendations-including the choice of sampling density, read depth, alignment algorithms, read-depth normalization, and cycling detection algorithms-based on computational simulations and our experience from previous studies. We believe that these results will be of interest to the circadian field and help investigators design experiments to derive most values from these large and complex data sets.
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Affiliation(s)
- Jiajia Li
- Department of Biology, University of Missouri-St. Louis, St. Louis, Missouri, USA
| | - Gregory R Grant
- Department of Genetics, University of Pennsylvania, Philadelphia, Pennsylvania, USA; Penn Center for Bioinformatics, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - John B Hogenesch
- Department of Pharmacology, Institute for Translational Medicine and Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, USA
| | - Michael E Hughes
- Department of Biology, University of Missouri-St. Louis, St. Louis, Missouri, USA.
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116
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Chen W, Liu Z, Li T, Zhang R, Xue Y, Zhong Y, Bai W, Zhou D, Zhao Z. Regulation of Drosophila circadian rhythms by miRNA let-7 is mediated by a regulatory cycle. Nat Commun 2014; 5:5549. [DOI: 10.1038/ncomms6549] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Accepted: 10/09/2014] [Indexed: 11/09/2022] Open
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117
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Kunst M, Tso MCF, Ghosh DD, Herzog ED, Nitabach MN. Rhythmic control of activity and sleep by class B1 GPCRs. Crit Rev Biochem Mol Biol 2014; 50:18-30. [PMID: 25410535 DOI: 10.3109/10409238.2014.985815] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Members of the class B1 family of G-protein coupled receptors (GPCRs) whose ligands are neuropeptides have been implicated in regulation of circadian rhythms and sleep in diverse metazoan clades. This review discusses the cellular and molecular mechanisms by which class B1 GPCRs, especially the mammalian VPAC2 receptor and its functional homologue PDFR in Drosophila and C. elegans, regulate arousal and daily rhythms of sleep and wake. There are remarkable parallels in the cellular and molecular roles played by class B1 intercellular signaling pathways in coordinating arousal and circadian timekeeping across multiple cells and tissues in these very different genetic model organisms.
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Affiliation(s)
- Michael Kunst
- Department of Cellular and Molecular Physiology, Yale University School of Medicine , New Haven, CT , USA and
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118
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Kunst M, Hughes ME, Raccuglia D, Felix M, Li M, Barnett G, Duah J, Nitabach MN. Calcitonin gene-related peptide neurons mediate sleep-specific circadian output in Drosophila. Curr Biol 2014; 24:2652-64. [PMID: 25455031 DOI: 10.1016/j.cub.2014.09.077] [Citation(s) in RCA: 151] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2012] [Revised: 09/05/2014] [Accepted: 09/26/2014] [Indexed: 01/09/2023]
Abstract
BACKGROUND Imbalances in amount and timing of sleep are harmful to physical and mental health. Therefore, the study of the underlying mechanisms is of great biological importance. Proper timing and amount of sleep are regulated by both the circadian clock and homeostatic sleep drive. However, very little is known about the cellular and molecular mechanisms by which the circadian clock regulates sleep. In this study, we describe a novel role for diuretic hormone 31 (DH31), the fly homolog of the vertebrate neuropeptide calcitonin gene-related peptide, as a circadian wake-promoting signal that awakens the fly in anticipation of dawn. RESULTS Analysis of loss-of-function and gain-of-function Drosophila mutants demonstrates that DH31 suppresses sleep late at night. DH31 is expressed by a subset of dorsal circadian clock neurons that also express the receptor for the circadian neuropeptide pigment-dispersing factor (PDF). PDF secreted by the ventral pacemaker subset of circadian clock neurons acts on PDF receptors in the DH31-expressing dorsal clock neurons to increase DH31 secretion before dawn. Activation of PDF receptors in DH31-positive DN1 specifically affects sleep and has no effect on circadian rhythms, thus constituting a dedicated locus for circadian regulation of sleep. CONCLUSIONS We identified a novel signaling molecule (DH31) as part of a neuropeptide relay mechanism for circadian control of sleep. Our results indicate that outputs of the clock controlling sleep and locomotor rhythms are mediated via distinct neuronal pathways.
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Affiliation(s)
- Michael Kunst
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Michael E Hughes
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Davide Raccuglia
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Mario Felix
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Michael Li
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Gregory Barnett
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Janelle Duah
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
| | - Michael N Nitabach
- Department of Cellular and Molecular Physiology, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA; Department of Genetics, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA; Program in Cellular Neuroscience, Neurodegeneration, and Repair, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
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119
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Zwarts L, Van Eijs F, Callaerts P. Glia in Drosophila behavior. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014; 201:879-93. [PMID: 25336160 DOI: 10.1007/s00359-014-0952-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Revised: 10/02/2014] [Accepted: 10/07/2014] [Indexed: 02/06/2023]
Abstract
Glial cells constitute about 10 % of the Drosophila nervous system. The development of genetic and molecular tools has helped greatly in defining different types of glia. Furthermore, considerable progress has been made in unraveling the mechanisms that control the development and differentiation of Drosophila glia. By contrast, the role of glia in adult Drosophila behavior is not well understood. We here summarize recent work describing the role of glia in normal behavior and in Drosophila models for neurological and behavioral disorders.
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Affiliation(s)
- L Zwarts
- Laboratory of Behavioral and Developmental Genetics VIB Center for the Biology of Disease, Center for Human Genetics, KULeuven, O&N IV Herestraat 49, Box 602, 3000, Louvain, Belgium
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120
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Dusik V, Senthilan PR, Mentzel B, Hartlieb H, Wülbeck C, Yoshii T, Raabe T, Helfrich-Förster C. The MAP kinase p38 is part of Drosophila melanogaster's circadian clock. PLoS Genet 2014; 10:e1004565. [PMID: 25144774 PMCID: PMC4140665 DOI: 10.1371/journal.pgen.1004565] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2013] [Accepted: 06/30/2014] [Indexed: 11/18/2022] Open
Abstract
All organisms have to adapt to acute as well as to regularly occurring changes in the environment. To deal with these major challenges organisms evolved two fundamental mechanisms: the p38 mitogen-activated protein kinase (MAPK) pathway, a major stress pathway for signaling stressful events, and circadian clocks to prepare for the daily environmental changes. Both systems respond sensitively to light. Recent studies in vertebrates and fungi indicate that p38 is involved in light-signaling to the circadian clock providing an interesting link between stress-induced and regularly rhythmic adaptations of animals to the environment, but the molecular and cellular mechanisms remained largely unknown. Here, we demonstrate by immunocytochemical means that p38 is expressed in Drosophila melanogaster's clock neurons and that it is activated in a clock-dependent manner. Surprisingly, we found that p38 is most active under darkness and, besides its circadian activation, additionally gets inactivated by light. Moreover, locomotor activity recordings revealed that p38 is essential for a wild-type timing of evening activity and for maintaining ∼ 24 h behavioral rhythms under constant darkness: flies with reduced p38 activity in clock neurons, delayed evening activity and lengthened the period of their free-running rhythms. Furthermore, nuclear translocation of the clock protein Period was significantly delayed on the expression of a dominant-negative form of p38b in Drosophila's most important clock neurons. Western Blots revealed that p38 affects the phosphorylation degree of Period, what is likely the reason for its effects on nuclear entry of Period. In vitro kinase assays confirmed our Western Blot results and point to p38 as a potential "clock kinase" phosphorylating Period. Taken together, our findings indicate that the p38 MAP Kinase is an integral component of the core circadian clock of Drosophila in addition to playing a role in stress-input pathways.
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Affiliation(s)
- Verena Dusik
- Neurobiology and Genetics, Biocenter, University of Würzburg, Würzburg, Germany
| | | | - Benjamin Mentzel
- Institute of Medical Radiation and Cell Research, University of Würzburg, Würzburg, Germany
| | - Heiko Hartlieb
- Neurobiology and Genetics, Biocenter, University of Würzburg, Würzburg, Germany
| | - Corinna Wülbeck
- Institute of Zoology, University of Regensburg, Regensburg, Germany
| | - Taishi Yoshii
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
| | - Thomas Raabe
- Institute of Medical Radiation and Cell Research, University of Würzburg, Würzburg, Germany
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121
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Stern DL. Reported Drosophila courtship song rhythms are artifacts of data analysis. BMC Biol 2014; 12:38. [PMID: 24965095 PMCID: PMC4071150 DOI: 10.1186/1741-7007-12-38] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Accepted: 05/20/2014] [Indexed: 12/27/2022] Open
Abstract
Background In a series of landmark papers, Kyriacou, Hall, and colleagues reported that the average inter-pulse interval of Drosophila melanogaster male courtship song varies rhythmically (KH cycles), that the period gene controls this rhythm, and that evolution of the period gene determines species differences in the rhythm’s frequency. Several groups failed to recover KH cycles, but this may have resulted from differences in recording chamber size. Results Here, using recording chambers of the same dimensions as used by Kyriacou and Hall, I found no compelling evidence for KH cycles at any frequency. By replicating the data analysis procedures employed by Kyriacou and Hall, I found that two factors - data binned into 10-second intervals and short recordings - imposed non-significant periodicity in the frequency range reported for KH cycles. Randomized data showed similar patterns. Conclusions All of the results related to KH cycles are likely to be artifacts of binning data from short songs. Reported genotypic differences in KH cycles cannot be explained by this artifact and may have resulted from the use of small sample sizes and/or from the exclusion of samples that did not exhibit song rhythms.
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Affiliation(s)
- David L Stern
- Janelia Farm Research Campus, Ashburn VA 20147, USA.
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122
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Abstract
Fruit flies (Drosophila melanogaster) are an established model for both alcohol research and circadian biology. Recently, we showed that the circadian clock modulates alcohol sensitivity, but not the formation of tolerance. Here, we describe our protocol in detail. Alcohol is administered to the flies using the FlyBar. In this setup, saturated alcohol vapor is mixed with humidified air in set proportions, and administered to the flies in four tubes simultaneously. Flies are reared under standardized conditions in order to minimize variation between the replicates. Three-day old flies of different genotypes or treatments are used for the experiments, preferably by matching flies of two different time points (e.g., CT 5 and CT 17) making direct comparisons possible. During the experiment, flies are exposed for 1 hr to the pre-determined percentage of alcohol vapor and the number of flies that exhibit the Loss of Righting reflex (LoRR) or sedation are counted every 5 min. The data can be analyzed using three different statistical approaches. The first is to determine the time at which 50% of the flies have lost their righting reflex and use an Analysis of the Variance (ANOVA) to determine whether significant differences exist between time points. The second is to determine the percentage flies that show LoRR after a specified number of minutes, followed by an ANOVA analysis. The last method is to analyze the whole times series using multivariate statistics. The protocol can also be used for non-circadian experiments or comparisons between genotypes.
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Affiliation(s)
| | - Emiliano Fumagalli
- Department of Biology and Biochemistry, Biology of Behavior Institute, University of Houston
| | - Gregg Roman
- Department of Biology and Biochemistry, Biology of Behavior Institute, University of Houston
| | - Lisa C Lyons
- Department of Biological Science, Florida State University;
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123
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Morning and evening oscillators cooperate to reset circadian behavior in response to light input. Cell Rep 2014; 7:601-8. [PMID: 24746814 DOI: 10.1016/j.celrep.2014.03.044] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2013] [Revised: 02/12/2014] [Accepted: 03/17/2014] [Indexed: 12/11/2022] Open
Abstract
Light is a crucial input for circadian clocks. In Drosophila, short light exposure can robustly shift the phase of circadian behavior. The model for this resetting posits that circadian photoreception is cell autonomous: CRYPTOCHROME senses light, binds to TIMELESS (TIM), and promotes its degradation, which is mediated by JETLAG (JET). However, it was recently proposed that interactions between circadian neurons are also required for phase resetting. We identify two groups of neurons critical for circadian photoreception: the morning (M) and the evening (E) oscillators. These neurons work synergistically to reset rhythmic behavior. JET promotes acute TIM degradation cell autonomously in M and E oscillators but also nonautonomously in E oscillators when expressed in M oscillators. Thus, upon light exposure, the M oscillators communicate with the E oscillators. Because the M oscillators drive circadian behavior, they must also receive inputs from the E oscillators. Hence, although photic TIM degradation is largely cell autonomous, neural cooperation between M and E oscillators is critical for circadian behavioral photoresponses.
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124
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Anderson DJ, Adolphs R. A framework for studying emotions across species. Cell 2014; 157:187-200. [PMID: 24679535 PMCID: PMC4098837 DOI: 10.1016/j.cell.2014.03.003] [Citation(s) in RCA: 378] [Impact Index Per Article: 34.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2014] [Revised: 02/18/2014] [Accepted: 03/02/2014] [Indexed: 10/25/2022]
Abstract
Since the 19th century, there has been disagreement over the fundamental question of whether "emotions" are cause or consequence of their associated behaviors. This question of causation is most directly addressable in genetically tractable model organisms, including invertebrates such as Drosophila. Yet there is ongoing debate about whether such species even have "emotions," as emotions are typically defined with reference to human behavior and neuroanatomy. Here, we argue that emotional behaviors are a class of behaviors that express internal emotion states. These emotion states exhibit certain general functional and adaptive properties that apply across any specific human emotions like fear or anger, as well as across phylogeny. These general properties, which can be thought of as "emotion primitives," can be modeled and studied in evolutionarily distant model organisms, allowing functional dissection of their mechanistic bases and tests of their causal relationships to behavior. More generally, our approach not only aims at better integration of such studies in model organisms with studies of emotion in humans, but also suggests a revision of how emotion should be operationalized within psychology and psychiatry.
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Affiliation(s)
- David J Anderson
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA.
| | - Ralph Adolphs
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Division of Humanities and Social Sciences, California Institute of Technology, Pasadena, CA 91125, USA.
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125
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Vafopoulou X, Steel CGH. Synergistic induction of the clock protein PERIOD by insulin-like peptide and prothoracicotropic hormone in Rhodnius prolixus (Hemiptera): implications for convergence of hormone signaling pathways. Front Physiol 2014; 5:41. [PMID: 24600396 PMCID: PMC3928625 DOI: 10.3389/fphys.2014.00041] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Accepted: 01/22/2014] [Indexed: 12/01/2022] Open
Abstract
We showed previously that release of the cerebral neurohormones, bombyxin (an insulin-like peptide, ILP) and prothoracicotropic hormone (PTTH) from the brain have strong circadian rhythms, driven by master clock cells in the brain. These neurohormone rhythms synchronize the photosensitive brain clock with the photosensitive peripheral clock in the cells of the prothoracic glands (PGs), in which both regulate steroidogenesis. Here, using immunohistochemistry and confocal laser scanning microscopy, we show these neurohormones likely act on clock cells in the brain and PGs by regulating expression of PERIOD (PER) protein. PER is severely reduced in the nuclei of all clock cells in continuous light, but on transfer of tissues to darkness in vitro, it is rapidly induced. A 4h pulse of either PTTH or ILPs to brain and PGs in vitro both rapidly and highly significantly induce PER in the nuclei of clock cells. Administration of both neurohormones together induces more PER than does either alone and even more than does transfer to darkness, at least in PG cells. These are clearly non-steroidogenic actions of these peptides. In the peripheral oscillators salivary gland (SG) and fat body cells, neither bombyxin nor PTTH nor darkness induced PER, but a combination of both bombyxin and PTTH induced PER. Thus, PTTH and ILPs exert synergistic actions on induction of PER in both clock cells and peripheral oscillators, implying their signaling pathways converge, but in different ways in different cell types. We infer clock cells are able to integrate light cycle information with internal signals from hormones.
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126
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Tataroglu O, Emery P. Studying circadian rhythms in Drosophila melanogaster. Methods 2014; 68:140-50. [PMID: 24412370 DOI: 10.1016/j.ymeth.2014.01.001] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2013] [Accepted: 01/02/2014] [Indexed: 11/25/2022] Open
Abstract
Circadian rhythms have a profound influence on most bodily functions: from metabolism to complex behaviors. They ensure that all these biological processes are optimized with the time-of-day. They are generated by endogenous molecular oscillators that have a period that closely, but not exactly, matches day length. These molecular clocks are synchronized by environmental cycles such as light intensity and temperature. Drosophila melanogaster has been a model organism of choice to understand genetically, molecularly and at the level of neural circuits how circadian rhythms are generated, how they are synchronized by environmental cues, and how they drive behavioral cycles such as locomotor rhythms. This review will cover a wide range of techniques that have been instrumental to our understanding of Drosophila circadian rhythms, and that are essential for current and future research.
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Affiliation(s)
- Ozgur Tataroglu
- Department of Neurobiology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, United States
| | - Patrick Emery
- Department of Neurobiology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, United States.
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127
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Kim WJ, Jan LY, Jan YN. A PDF/NPF neuropeptide signaling circuitry of male Drosophila melanogaster controls rival-induced prolonged mating. Neuron 2013; 80:1190-205. [PMID: 24314729 PMCID: PMC3867312 DOI: 10.1016/j.neuron.2013.09.034] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/17/2013] [Indexed: 12/21/2022]
Abstract
A primary function of males for many species involves mating with females for reproduction. Drosophila melanogaster males respond to the presence of other males by prolonging mating duration to increase the chance of passing on their genes. To understand the basis of such complex behaviors, we examine the genetic network and neural circuits that regulate rival-induced Longer-Mating-Duration (LMD). Here, we identify a small subset of clock neurons in the male brain that regulate LMD via neuropeptide signaling. LMD requires the function of pigment-dispersing factor (PDF) in four s-LNv neurons and its receptor PDFR in two LNd neurons per hemisphere, as well as the function of neuropeptide F (NPF) in two neurons within the sexually dimorphic LNd region and its receptor NPFR1 in four s-LNv neurons per hemisphere. Moreover, rival exposure modifies the neuronal activities of a subset of clock neurons involved in neuropeptide signaling for LMD.
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Affiliation(s)
- Woo Jae Kim
- Howard Hughes Medical Institute, Departments of Physiology, Biochemistry, and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
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128
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Huang Y, Ainsley JA, Reijmers LG, Jackson FR. Translational profiling of clock cells reveals circadianly synchronized protein synthesis. PLoS Biol 2013; 11:e1001703. [PMID: 24348200 PMCID: PMC3864454 DOI: 10.1371/journal.pbio.1001703] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2013] [Accepted: 09/24/2013] [Indexed: 12/03/2022] Open
Abstract
This study describes, for the first time, the rhythmic translational program within circadian
clock cells. The results indicate that most clock cell mRNAs are translated at low-energy times of
either mid-day or mid-night, and also that related cellular functions are coordinately regulated by
the synchronized translation of relevant mRNAs at the same time of day. Genome-wide studies of circadian transcription or mRNA translation have been hindered by the
presence of heterogeneous cell populations in complex tissues such as the nervous system. We
describe here the use of a Drosophila cell-specific translational profiling
approach to document the rhythmic “translatome” of neural clock cells for the first time
in any organism. Unexpectedly, translation of most clock-regulated transcripts—as assayed by
mRNA ribosome association—occurs at one of two predominant circadian phases, midday or
mid-night, times of behavioral quiescence; mRNAs encoding similar cellular functions are translated
at the same time of day. Our analysis also indicates that fundamental cellular
processes—metabolism, energy production, redox state (e.g., the thioredoxin system), cell
growth, signaling and others—are rhythmically modulated within clock cells via synchronized
protein synthesis. Our approach is validated by the identification of mRNAs known to exhibit
circadian changes in abundance and the discovery of hundreds of novel mRNAs that show translational
rhythms. This includes Tdc2, encoding a neurotransmitter synthetic enzyme, which we
demonstrate is required within clock neurons for normal circadian locomotor activity. The circadian clock controls daily rhythms in physiology and behavior via mechanisms that
regulate gene expression. While numerous studies have examined the clock regulation of gene
transcription and documented rhythms in mRNA abundance, less is known about how circadian changes in
protein synthesis contribute to the orchestration of physiological and behavioral programs. Here we
have monitored mRNA ribosomal association (as a proxy for translation) to globally examine the
circadian timing of protein synthesis specifically within clock cells of
Drosophila. The results reveal, for the first time in any organism, the complete
circadian program of protein synthesis (the “circadian translatome”) within these cells.
A novel finding is that most mRNAs within clock cells are translated at one of two predominant
circadian phases—midday or mid-night—times of low energy expenditure. Our work also
finds that many clock cell processes, including metabolism, redox state, signaling,
neurotransmission, and even protein synthesis itself, are coordinately regulated such that mRNAs
required for similar cellular functions are translated in synchrony at the same time of day.
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Affiliation(s)
- Yanmei Huang
- Department of Neuroscience, Sackler School of Biomedical Sciences, Tufts
University School of Medicine, Boston, Massachusetts, United States of America
- * E-mail: (Y.H.);
(F.R.J.)
| | - Joshua A. Ainsley
- Department of Neuroscience, Sackler School of Biomedical Sciences, Tufts
University School of Medicine, Boston, Massachusetts, United States of America
| | - Leon G. Reijmers
- Department of Neuroscience, Sackler School of Biomedical Sciences, Tufts
University School of Medicine, Boston, Massachusetts, United States of America
| | - F. Rob Jackson
- Department of Neuroscience, Sackler School of Biomedical Sciences, Tufts
University School of Medicine, Boston, Massachusetts, United States of America
- * E-mail: (Y.H.);
(F.R.J.)
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129
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Shang Y, Donelson NC, Vecsey CG, Guo F, Rosbash M, Griffith LC. Short neuropeptide F is a sleep-promoting inhibitory modulator. Neuron 2013; 80:171-83. [PMID: 24094110 DOI: 10.1016/j.neuron.2013.07.029] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/02/2013] [Indexed: 01/10/2023]
Abstract
To advance the understanding of sleep regulation, we screened for sleep-promoting cells and identified neurons expressing neuropeptide Y-like short neuropeptide F (sNPF). Sleep induction by sNPF meets all relevant criteria. Rebound sleep following sleep deprivation is reduced by activation of sNPF neurons, and flies experience negative sleep rebound upon cessation of sNPF neuronal stimulation, indicating that sNPF provides an important signal to the sleep homeostat. Only a subset of sNPF-expressing neurons, which includes the small ventrolateral clock neurons, is sleep promoting. Their release of sNPF increases sleep consolidation in part by suppressing the activity of wake-promoting large ventrolateral clock neurons, and suppression of neuronal firing may be the general response to sNPF receptor activation. sNPF acutely increases sleep without altering feeding behavior, which it affects only on a much longer time scale. The profound effect of sNPF on sleep indicates that it is an important sleep-promoting molecule.
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Affiliation(s)
- Yuhua Shang
- National Center for Behavioral Genomics and Department of Biology, Brandeis University, Waltham, MA 02454, USA
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130
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Rakshit K, Giebultowicz JM. Cryptochrome restores dampened circadian rhythms and promotes healthspan in aging Drosophila. Aging Cell 2013; 12:752-62. [PMID: 23692507 DOI: 10.1111/acel.12100] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/29/2013] [Indexed: 12/13/2022] Open
Abstract
Circadian clocks generate daily rhythms in molecular, cellular, and physiological functions providing temporal dimension to organismal homeostasis. Recent evidence suggests two-way relationship between circadian clocks and aging. While disruption of the circadian clock leads to premature aging in animals, there is also age-related dampening of output rhythms such as sleep/wake cycles and hormonal fluctuations. Decay in the oscillations of several clock genes was recently reported in aged fruit flies, but mechanisms underlying these age-related changes are not understood. We report that the circadian light-sensitive protein CRYPTOCHROME (CRY) is significantly reduced at both mRNA and protein levels in heads of old Drosophila melanogaster. Restoration of CRY using the binary GAL4/UAS system in old flies significantly enhanced the mRNA oscillatory amplitude of several genes involved in the clock mechanism. Flies with CRY overexpressed in all clock cells maintained strong rest/activity rhythms in constant darkness late in life when rhythms were disrupted in most control flies. We also observed a remarkable extension of healthspan in flies with elevated CRY. Conversely, CRY-deficient mutants showed accelerated functional decline and accumulated greater oxidative damage. Interestingly, overexpression of CRY in central clock neurons alone was not sufficient to restore rest/activity rhythms or extend healthspan. Together, these data suggest novel anti-aging functions of CRY and indicate that peripheral clocks play an active role in delaying behavioral and physiological aging.
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Affiliation(s)
- Kuntol Rakshit
- Department of Zoology; Center for Healthy Aging Research; Oregon State University; 3029 Cordley Hall; Corvallis; OR; 97331; USA
| | - Jadwiga M. Giebultowicz
- Department of Zoology; Center for Healthy Aging Research; Oregon State University; 3029 Cordley Hall; Corvallis; OR; 97331; USA
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131
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Cao G, Platisa J, Pieribone VA, Raccuglia D, Kunst M, Nitabach MN. Genetically targeted optical electrophysiology in intact neural circuits. Cell 2013; 154:904-13. [PMID: 23932121 DOI: 10.1016/j.cell.2013.07.027] [Citation(s) in RCA: 190] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2013] [Revised: 04/17/2013] [Accepted: 07/16/2013] [Indexed: 01/31/2023]
Abstract
Nervous systems process information by integrating the electrical activity of neurons in complex networks. This motivates the long-standing interest in using optical methods to simultaneously monitor the membrane potential of multiple genetically targeted neurons via expression of genetically encoded fluorescent voltage indicators (GEVIs) in intact neural circuits. No currently available GEVIs have demonstrated robust signals in intact brain tissue that enable reliable recording of individual electrical events simultaneously in multiple neurons. Here, we show that the recently developed "ArcLight" GEVI robustly reports both subthreshold events and action potentials in genetically targeted neurons in the intact Drosophila fruit fly brain and reveals electrical signals in neurite branches. In the same way that genetically encoded fluorescent sensors have revolutionized the study of intracellular Ca(2+) signals, ArcLight now enables optical measurement in intact neural circuits of membrane potential, the key cellular parameter that underlies neuronal information processing.
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Affiliation(s)
- Guan Cao
- Department of Cellular and Molecular Physiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA
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132
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He C, Cong X, Zhang R, Wu D, An C, Zhao Z. Regulation of circadian locomotor rhythm by neuropeptide Y-like system in Drosophila melanogaster. INSECT MOLECULAR BIOLOGY 2013; 22:376-388. [PMID: 23614491 DOI: 10.1111/imb.12027] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Circadian rhythms in behaviour and physiology exist widely in animals, plants, fungi and cyanobacteria. Although much work has been carried out to characterize the endogenous clock circuit, the output signals coupling the circadian pacemaker to behaviour and physiology remain elusive. Here, we show that neuropeptide F (NPF), a homologue of mammalian neuropeptide Y, and its G protein-coupled receptor NPFR1 regulate the locomotor rhythm in Drosophila melanogaster. Flies with loss of function in NPF or NPFR1 were unable to ramp up their activity before lights off under light : dark (LD) cycles, and oscillations in npf/NPF and npfr1/NPFR1 were found to correlate temporally with the locomotor rhythm. Furthermore, NPF is expressed in clock neurones including dorsolateral neurones (LNd s) and ventrolateral neurones (LNv s), whereas NPFR1 is expressed in dorsal neurone 1 (DN1) and LNd s. These results show that NPF signalling is involved in the circadian locomotor rhythm in LD cycles.
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Affiliation(s)
- C He
- College of Agriculture and Biotechnology, China Agricultural University, Beijing, China
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133
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Sivachenko A, Li Y, Abruzzi KC, Rosbash M. The transcription factor Mef2 links the Drosophila core clock to Fas2, neuronal morphology, and circadian behavior. Neuron 2013; 79:281-92. [PMID: 23889933 PMCID: PMC3859024 DOI: 10.1016/j.neuron.2013.05.015] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/03/2013] [Indexed: 12/01/2022]
Abstract
The transcription factor Mef2 regulates activity-dependent neuronal plasticity and morphology in mammals, and clock neurons are reported to experience activity-dependent circadian remodeling in Drosophila. We show here that Mef2 is required for this daily fasciculation-defasciculation cycle. Moreover, the master circadian transcription complex CLK/CYC directly regulates Mef2 transcription. ChIP-Chip analysis identified numerous Mef2 target genes implicated in neuronal plasticity, including the cell-adhesion gene Fas2. Genetic epistasis experiments support this transcriptional regulatory hierarchy, CLK/CYC- > Mef2- > Fas2, indicate that it influences the circadian fasciculation cycle within pacemaker neurons, and suggest that this cycle also contributes to circadian behavior. Mef2 therefore transmits clock information to machinery involved in neuronal remodeling, which contributes to locomotor activity rhythms.
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Affiliation(s)
- Anna Sivachenko
- Howard Hughes Medical Institute, National Center for Behavioral Genomics, Department of Biology, Brandeis University, 415 South Street, Waltham, MA 02454 USA
| | - Yue Li
- Howard Hughes Medical Institute, National Center for Behavioral Genomics, Department of Biology, Brandeis University, 415 South Street, Waltham, MA 02454 USA
| | - Katharine C. Abruzzi
- Howard Hughes Medical Institute, National Center for Behavioral Genomics, Department of Biology, Brandeis University, 415 South Street, Waltham, MA 02454 USA
| | - Michael Rosbash
- Howard Hughes Medical Institute, National Center for Behavioral Genomics, Department of Biology, Brandeis University, 415 South Street, Waltham, MA 02454 USA
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134
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Zhang Y, Emery P. GW182 controls Drosophila circadian behavior and PDF-receptor signaling. Neuron 2013; 78:152-65. [PMID: 23583112 DOI: 10.1016/j.neuron.2013.01.035] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/23/2013] [Indexed: 12/19/2022]
Abstract
The neuropeptide PDF is crucial for Drosophila circadian behavior: it keeps circadian neurons synchronized. Here, we identify GW182 as a key regulator of PDF signaling. Indeed, GW182 downregulation results in phenotypes similar to those of Pdf and Pdf-receptor (Pdfr) mutants. gw182 genetically interacts with Pdfr and cAMP signaling, which is essential for PDFR function. GW182 mediates miRNA-dependent gene silencing through its interaction with AGO1. Consistently, GW182's AGO1 interaction domain is required for GW182's circadian function. Moreover, our results indicate that GW182 modulates PDFR signaling by silencing the expression of the cAMP phosphodiesterase DUNCE. Importantly, this repression is under photic control, and GW182 activity level--which is limiting in circadian neurons--influences the responses of the circadian neural network to light. We propose that GW182's gene silencing activity functions as a rheostat for PDFR signaling and thus profoundly impacts the circadian neural network and its response to environmental inputs.
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Affiliation(s)
- Yong Zhang
- Department of Neurobiology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA
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135
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Muraro NI, Pírez N, Ceriani MF. The circadian system: plasticity at many levels. Neuroscience 2013; 247:280-93. [PMID: 23727010 DOI: 10.1016/j.neuroscience.2013.05.036] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Revised: 05/17/2013] [Accepted: 05/20/2013] [Indexed: 11/16/2022]
Abstract
Over the years it has become crystal clear that a variety of processes encode time-of-day information, ranging from gene expression, protein stability, or subcellular localization of key proteins, to the fine tuning of network properties and modulation of input signals, ultimately ensuring that physiology and behavior are properly synchronized to a changing environment. The purpose of this review is to put forward examples (as opposed to generate a comprehensive revision of all the available literature) in which the circadian system displays a remarkable degree of plasticity, from cell autonomous to circuit-based levels. In the literature, the term circadian plasticity has been used to refer to different concepts. The obvious one, more literally, refers to any change that follows a circadian (circa=around, diem=day) pattern, i.e. a daily change of a given parameter. The discovery of daily remodeling of neuronal structures will be referred herein as structural circadian plasticity, and represents an additional and novel phenomenon modified daily. Finally, any plasticity that has to do with a circadian parameter would represent a type of circadian plasticity; as an example, adjustments that allow organisms to adapt their daily behavior to the annual changes in photoperiod is a form of circadian plasticity at a higher organizational level, which is an emergent property of the whole circadian system. Throughout this work we will revisit these types of changes by reviewing recent literature delving around circadian control of clock outputs, from the most immediate ones within pacemaker neurons to the circadian modulation of rest-activity cycles.
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Affiliation(s)
- N I Muraro
- Laboratorio de Genética del Comportamiento, Fundación Instituto Leloir, IIB-BA-CONICET, Buenos Aires, Argentina
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136
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Mandilaras K, Pathmanathan T, Missirlis F. Iron absorption in Drosophila melanogaster. Nutrients 2013; 5:1622-47. [PMID: 23686013 PMCID: PMC3708341 DOI: 10.3390/nu5051622] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Revised: 05/03/2013] [Accepted: 05/07/2013] [Indexed: 12/20/2022] Open
Abstract
The way in which Drosophila melanogaster acquires iron from the diet remains poorly understood despite iron absorption being of vital significance for larval growth. To describe the process of organismal iron absorption, consideration needs to be given to cellular iron import, storage, export and how intestinal epithelial cells sense and respond to iron availability. Here we review studies on the Divalent Metal Transporter-1 homolog Malvolio (iron import), the recent discovery that Multicopper Oxidase-1 has ferroxidase activity (iron export) and the role of ferritin in the process of iron acquisition (iron storage). We also describe what is known about iron regulation in insect cells. We then draw upon knowledge from mammalian iron homeostasis to identify candidate genes in flies. Questions arise from the lack of conservation in Drosophila for key mammalian players, such as ferroportin, hepcidin and all the components of the hemochromatosis-related pathway. Drosophila and other insects also lack erythropoiesis. Thus, systemic iron regulation is likely to be conveyed by different signaling pathways and tissue requirements. The significance of regulating intestinal iron uptake is inferred from reports linking Drosophila developmental, immune, heat-shock and behavioral responses to iron sequestration.
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Affiliation(s)
- Konstantinos Mandilaras
- School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London, E1 4NS, UK; E-Mail:
| | - Tharse Pathmanathan
- Department of Physiology, Biophysics and Neuroscience, CINVESTAV-IPN, IPN Avenue 2508, Zacatenco, 07360, Mexico City, Mexico; E-Mail:
| | - Fanis Missirlis
- Department of Physiology, Biophysics and Neuroscience, CINVESTAV-IPN, IPN Avenue 2508, Zacatenco, 07360, Mexico City, Mexico; E-Mail:
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +52-55-5747-3963; Fax: +52-55-5747-5713
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137
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Pirooznia SK, Elefant F. A HAT for sleep?: epigenetic regulation of sleep by Tip60 in Drosophila. Fly (Austin) 2013; 7:99-104. [PMID: 23572111 DOI: 10.4161/fly.24141] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Sleep disturbances are common in neurodegenerative diseases such as Alzheimer disease (AD). Unfortunately, how AD is mechanistically linked with interference of the body's natural sleep rhythms remains unclear. Our recent findings provide insight into this question by demonstrating that sleep disruption associated with AD is driven by epigenetic changes mediated by the histone acetyltransferase (HAT) Tip60. In this study, we show that Tip60 functionally interacts with the AD associated amyloid precursor protein (APP) to regulate axonal growth of Drosophila small ventrolateral neuronal (sLNv) pacemaker cells, and their production of neuropeptide pigment dispersing factor (PDF) that stabilizes appropriate sleep-wake patterns in the fly. Loss of Tip60 HAT activity under APP neurodegenerative conditions causes decreased PDF production, retraction of the sLNv synaptic arbor required for PDF release and disruption of sleep-wake cycles in these flies. Remarkably, excess Tip60 in conjunction with APP fully rescues these sleep-wake disturbances by inducing overelaboration of the sLNv synaptic terminals and increasing PDF levels, supporting a neuroprotective role for Tip60 in these processes. Our studies highlight the importance of epigenetic based mechanisms underlying sleep disturbances in neurodegenerative diseases like AD.
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138
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Uhrigshardt H, Rouault TA, Missirlis F. Insertion mutants in Drosophila melanogaster Hsc20 halt larval growth and lead to reduced iron-sulfur cluster enzyme activities and impaired iron homeostasis. J Biol Inorg Chem 2013; 18:441-9. [PMID: 23444034 PMCID: PMC3612401 DOI: 10.1007/s00775-013-0988-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Accepted: 02/07/2013] [Indexed: 10/31/2022]
Abstract
Despite the prominence of iron-sulfur cluster (ISC) proteins in bioenergetics, intermediary metabolism, and redox regulation of cellular, mitochondrial, and nuclear processes, these proteins have been given scarce attention in Drosophila. Moreover, biosynthesis and delivery of ISCs to target proteins requires a highly regulated molecular network that spans different cellular compartments. The only Drosophila ISC biosynthetic protein studied to date is frataxin, in attempts to model Friedreich's ataxia, a disease arising from reduced expression of the human frataxin homologue. One of several proteins involved in ISC biogenesis is heat shock protein cognate 20 (Hsc20). Here we characterize two piggyBac insertion mutants in Drosophila Hsc20 that display larval growth arrest and deficiencies in aconitase and succinate dehydrogenase activities, but not in isocitrate dehydrogenase activity; phenotypes also observed with ubiquitous frataxin RNA interference. Furthermore, a disruption of iron homeostasis in the mutant flies was evidenced by an apparent reduction in induction of intestinal ferritin with ferric iron accumulating in a subcellular pattern reminiscent of mitochondria. These phenotypes were specific to intestinal cell types that regulate ferritin expression, but were notably absent in the iron cells where ferritin is constitutively expressed and apparently translated independently of iron regulatory protein 1A. Hsc20 mutant flies represent an independent tool to disrupt ISC biogenesis in vivo without using the RNA interference machinery.
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Affiliation(s)
- Helge Uhrigshardt
- Molecular Medicine Program, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA
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139
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Kauranen H, Menegazzi P, Costa R, Helfrich-Förster C, Kankainen A, Hoikkala A. Flies in the north: locomotor behavior and clock neuron organization of Drosophila montana. J Biol Rhythms 2013; 27:377-87. [PMID: 23010660 DOI: 10.1177/0748730412455916] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The circadian clock plays an important role in adaptation in time and space by synchronizing changes in physiological, developmental, and behavioral traits of organisms with daily and seasonal changes in their environment. We have studied some features of the circadian activity and clock organization in a northern Drosophila species, Drosophila montana, at both the phenotypic and the neuronal levels. In the first part of the study, we monitored the entrained and free-running locomotor activity rhythms of females in different light-dark and temperature regimes. These studies showed that D. montana flies completely lack the morning activity component typical to more southern Drosophila species in an entrained environment and that they are able to maintain their free-running locomotor activity rhythm better in constant light than in constant darkness. In the second part of the study, we traced the expression of the PDF neuropeptide and the CRY protein in the neurons of the brain in D. montana adults and found differences in the number and location of PDF- and CRY-expressing neurons compared with those described in Drosophila melanogaster. These differences could account, at least in part, for the lack of morning activity and the reduced circadian rhythmicity of D. montana flies in constant darkness, both of which are likely to be adaptive features during the long and dark winters occurring in nature.
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Affiliation(s)
- Hannele Kauranen
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.
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140
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KAYAK-α modulates circadian transcriptional feedback loops in Drosophila pacemaker neurons. J Neurosci 2013; 32:16959-70. [PMID: 23175847 DOI: 10.1523/jneurosci.1888-12.2012] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Circadian rhythms are generated by well-conserved interlocked transcriptional feedback loops in animals. In Drosophila, the dimeric transcription factor CLOCK/CYCLE (CLK/CYC) promotes period (per), timeless (tim), vrille (vri), and PAR-domain protein 1 (Pdp1) transcription. PER and TIM negatively feed back on CLK/CYC transcriptional activity, whereas VRI and PDP1 negatively and positively regulate Clk transcription, respectively. Here, we show that the α isoform of the Drosophila FOS homolog KAYAK (KAY) is required for normal circadian behavior. KAY-α downregulation in circadian pacemaker neurons increases period length by 1.5 h. This behavioral phenotype is correlated with decreased expression of several circadian proteins. The strongest effects are on CLK and the neuropeptide PIGMENT DISPERSING FACTOR, which are both under VRI and PDP1 control. Consistently, KAY-α can bind to VRI and inhibit its interaction with the Clk promoter. Interestingly, KAY-α can also repress CLK activity. Hence, in flies with low KAY-α levels, CLK derepression would partially compensate for increased VRI repression, thus attenuating the consequences of KAY-α downregulation on CLK targets. We propose that the double role of KAY-α in the two transcriptional loops controlling Drosophila circadian behavior brings precision and stability to their oscillations.
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141
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Bednářová A, Kodrík D, Krishnan N. Nature's Timepiece-Molecular Coordination of Metabolism and Its Impact on Aging. Int J Mol Sci 2013; 14:3026-49. [PMID: 23434656 PMCID: PMC3588029 DOI: 10.3390/ijms14023026] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Revised: 01/05/2013] [Accepted: 01/16/2013] [Indexed: 11/16/2022] Open
Abstract
Circadian rhythms are found in almost all organisms from cyanobacteria to humans, where most behavioral and physiological processes occur over a period of approximately 24 h in tandem with the day/night cycles. In general, these rhythmic processes are under regulation of circadian clocks. The role of circadian clocks in regulating metabolism and consequently cellular and metabolic homeostasis is an intensively investigated area of research. However, the links between circadian clocks and aging are correlative and only recently being investigated. A physiological decline in most processes is associated with advancing age, and occurs at the onset of maturity and in some instances is the result of accumulation of cellular damage beyond a critical level. A fully functional circadian clock would be vital to timing events in general metabolism, thus contributing to metabolic health and to ensure an increased “health-span” during the process of aging. Here, we present recent evidence of links between clocks, cellular metabolism, aging and oxidative stress (one of the causative factors of aging). In the light of these data, we arrive at conceptual generalizations of this relationship across the spectrum of model organisms from fruit flies to mammals.
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Affiliation(s)
- Andrea Bednářová
- Institute of Entomology, Biology Centre, Academy of Science, Branišovská 31, České Budějovice 370 05-CZ, Czech Republic; E-Mails: (A.B.); (D.K.)
- Faculty of Science, South Bohemian University, Branišovská 31, České Budějovice 370 05-CZ, Czech Republic
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA
| | - Dalibor Kodrík
- Institute of Entomology, Biology Centre, Academy of Science, Branišovská 31, České Budějovice 370 05-CZ, Czech Republic; E-Mails: (A.B.); (D.K.)
- Faculty of Science, South Bohemian University, Branišovská 31, České Budějovice 370 05-CZ, Czech Republic
| | - Natraj Krishnan
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +1-662-325-2978; Fax: +1-662-325-8837
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142
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Mandilaras K, Missirlis F. Genes for iron metabolism influence circadian rhythms in Drosophila melanogaster. Metallomics 2013; 4:928-36. [PMID: 22885802 DOI: 10.1039/c2mt20065a] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Haem has been previously implicated in the function of the circadian clock, but whether iron homeostasis is integrated with circadian rhythms is unknown. Here we describe an RNA interference (RNAi) screen using clock neurons of Drosophila melanogaster. RNAi is targeted to iron metabolism genes, including those involved in haem biosynthesis and degradation. The results indicate that Ferritin 2 Light Chain Homologue (Fer2LCH) is required for the circadian activity of flies kept in constant darkness. Oscillations of the core components in the molecular clock, PER and TIM, were also disrupted following Fer2LCH silencing. Other genes with a putative function in circadian biology include Transferrin-3, CG1358 (which has homology to the FLVCR haem export protein) and five genes implicated in iron-sulfur cluster biosynthesis: the Drosophila homologues of IscS (CG12264), IscU (CG9836), IscA1 (CG8198), Iba57 (CG8043) and Nubp2 (CG4858). Therefore, Drosophila genes involved in iron metabolism are required for a functional biological clock.
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143
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Gentile C, Sehadova H, Simoni A, Chen C, Stanewsky R. Cryptochrome antagonizes synchronization of Drosophila's circadian clock to temperature cycles. Curr Biol 2013; 23:185-95. [PMID: 23333312 DOI: 10.1016/j.cub.2012.12.023] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2012] [Revised: 09/03/2012] [Accepted: 12/13/2012] [Indexed: 10/27/2022]
Abstract
BACKGROUND In nature, both daily light:dark cycles and temperature fluctuations are used by organisms to synchronize their endogenous time with the daily cycles of light and temperature. Proper synchronization is important for the overall fitness and wellbeing of animals and humans, and although we know a lot about light synchronization, this is not the case for temperature inputs to the circadian clock. In Drosophila, light and temperature cues can act as synchronization signals (Zeitgeber), but it is not known how they are integrated. RESULTS We investigated whether different groups of the Drosophila clock neurons that regulate behavioral rhythmicity contribute to temperature synchronization at different absolute temperatures. Using spatially restricted expression of the clock gene period, we show that dorsally located clock neurons mainly mediate synchronization to higher (20°C:29°C) and ventral clock neurons to lower (16°C:25°C) temperature cycles. Molecularly, the blue-light photoreceptor CRYPTOCHROME (CRY) dampens temperature-induced PERIOD (PER)-LUCIFERASE oscillations in dorsal clock neurons. Consistent with this finding, we show that in the absence of CRY very limited expression of PER in a few dorsal clock neurons is able to mediate behavioral temperature synchronization to high and low temperature cycles independent of light. CONCLUSIONS We show that different subsets of clock neurons operate at high and low temperatures to mediate clock synchronization to temperature cycles, suggesting that temperature entrainment is not restricted to measuring the amplitude of such cycles. CRY dampens temperature input to the clock and thereby contributes to the integration of different Zeitgebers.
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Affiliation(s)
- Carla Gentile
- School of Biological and Chemical Sciences, Queen Mary, University of London, London E1 4NS, UK
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144
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Abstract
The master coordinator of daily schedules in mammals, located in the ventral hypothalamus, is the suprachiasmatic nucleus (SCN). This relatively small population of neurons and glia generates circadian rhythms in physiology and behavior and synchronizes them to local time. Recent advances have begun to define the roles of specific cells and signals (e.g., peptides, amino acids, and purine derivatives) within this network that generate and synchronize daily rhythms. Here we focus on the best-studied signals between neurons and between glia in the mammalian circadian system with an emphasis on time-of-day pharmacology. Where possible, we highlight how commonly used drugs affect the circadian system.
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145
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Di Cara F, King-Jones K. How clocks and hormones act in concert to control the timing of insect development. Curr Top Dev Biol 2013; 105:1-36. [PMID: 23962837 DOI: 10.1016/b978-0-12-396968-2.00001-4] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
During the last century, insect model systems have provided fascinating insights into the endocrinology and developmental biology of all animals. During the insect life cycle, molts and metamorphosis delineate transitions from one developmental stage to the next. In most insects, pulses of the steroid hormone ecdysone drive these developmental transitions by activating signaling cascades in target tissues. In holometabolous insects, ecdysone triggers metamorphosis, the remarkable remodeling of an immature larva into a sexually mature adult. The input from another developmental hormone, juvenile hormone (JH), is required to repress metamorphosis by promoting juvenile fates until the larva has acquired sufficient nutrients to survive metamorphosis. Ecdysone and JH act together as key endocrine timers to precisely control the onset of developmental transitions such as the molts, pupation, or eclosion. In this review, we will focus on the role of the endocrine system and the circadian clock, both individually and together, in temporally regulating insect development. Since this is not a coherent field, we will review recent developments that serve as examples to illuminate this complex topic. First, we will consider studies conducted in Rhodnius that revealed how circadian pathways exert temporal control over the production and release of ecdysone. We will then take a look at molecular and genetic data that revealed the presence of two circadian clocks, located in the brain and the prothoracic gland, that regulate eclosion rhythms in Drosophila. In this context, we will also review recent developments that examined how the ecdysone hierarchy delays the differentiation of the crustacean cardioactive peptide (CCAP) neurons, an event that is critical for the timing of ecdysis and eclosion. Finally, we will discuss some recent findings that transformed our understanding of JH function.
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Affiliation(s)
- Francesca Di Cara
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
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146
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Bloch G, Hazan E, Rafaeli A. Circadian rhythms and endocrine functions in adult insects. JOURNAL OF INSECT PHYSIOLOGY 2013; 59:56-69. [PMID: 23103982 DOI: 10.1016/j.jinsphys.2012.10.012] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2012] [Revised: 10/09/2012] [Accepted: 10/11/2012] [Indexed: 06/01/2023]
Abstract
Many behavioral and physiological processes in adult insects are influenced by both the endocrine and circadian systems, suggesting that these two key physiological systems interact. We reviewed the literature and found that experiments explicitly testing these interactions in adult insects have only been conducted for a few species. There is a shortage of measurements of hormone titers throughout the day under constant conditions even for the juvenile hormones (JHs) and ecdysteroids, the best studied insect hormones. Nevertheless, the available measurements of hormone titers coupled with indirect evidence for circadian modulation of hormone biosynthesis rate, and the expression of genes encoding proteins involved in hormone biosynthesis, binding or degradation are consistent with the hypothesis that the circulating levels of many insect hormones are influenced by the circadian system. Whole genome microarray studies suggest that the modulation of farnesol oxidase levels is important for the circadian regulation of JH biosynthesis in honey bees, mosquitoes, and fruit flies. Several studies have begun to address the functional significance of circadian oscillations in endocrine signaling. The best understood system is the circadian regulation of Pheromone Biosynthesis Activating Neuropeptide (PBAN) titers which is important for the temporal organization of sexual behavior in female moths. The evidence that the circadian and endocrine systems interact has important implications for studies of insect physiology and behavior. Additional studies on diverse species and physiological processes are needed for identifying basic principles underlying the interactions between the circadian and endocrine systems in insects.
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Affiliation(s)
- Guy Bloch
- Department of Ecology, Evolution, and Behavior, The Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem, Jerusalem, Israel.
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147
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Potdar S, Sheeba V. Large ventral lateral neurons determine the phase of evening activity peak across photoperiods in Drosophila melanogaster. J Biol Rhythms 2012; 27:267-79. [PMID: 22855571 DOI: 10.1177/0748730412449820] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The dual-oscillator model, originally proposed as a mechanism for how vertebrates adapt to seasonal changes, has been invoked to explain circadian entrainment in Drosophila melanogaster. Distinct subsets of neurons have been designated as "morning" and "evening" oscillators that function as regulators of rhythmic activity/rest behavior. Some studies have led to a model in which a subset of 8 "morning" cells (4 bilaterally located small ventral lateral neurons) and another subset of approximately 130 "evening" cells exert different levels of dominance within the circadian circuit in different seasons. However, many studies propose a more integrative neuronal network, with the whole network orchestrating activity/rest rhythms in different seasons, as opposed to hierarchical dominance among neurons. Within the circadian network, our understanding of the role of the large ventral lateral neurons (l-LN(v)) has thus far been limited to conveying light information to the clocks and as light-activated neurons mediating arousal. In support of the framework of a more distributed model, we report an important circadian clock-related role for the l-LN(v) in electrical activity-dependent phasing of the evening peak across a range of photoperiods. Further, we propose a model in which l-LN(v) enable adaptation to seasonal changes by regulating the phase of the evening peak. Additionally, we demonstrate a hitherto unknown role for the small ventral lateral neurons (s-LN(v)) in the arousal circuit, thus showing that neuronal function is flexible such that certain neurons can play more than one role in distinct circuits.
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Affiliation(s)
- Sheetal Potdar
- Behavioural Neurogenetics Laboratory, Evolutionary and Organismal Biology Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India
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148
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Umezaki Y, Yoshii T, Kawaguchi T, Helfrich-Förster C, Tomioka K. Pigment-Dispersing Factor Is Involved in Age-Dependent Rhythm Changes in Drosophila melanogaster. J Biol Rhythms 2012; 27:423-32. [DOI: 10.1177/0748730412462206] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Most animals show rest/activity rhythms that are regulated by an endogenous timing mechanism, the so-called circadian system. The rhythm becomes weaker with age, but the mechanism underlying the age-associated rhythm change remains to be elucidated. Here we employed Drosophila melanogaster as a model organism to study the aging effects on the rhythm. We first investigated activity rhythms under light-dark (LD) cycles and constant darkness (DD) in young (1-day-old) and middle-aged (30-, 40-, and 50-day-old) wild-type male flies. The middle-aged flies showed a reduced activity level in comparison with young flies. Additionally, the free-running period significantly lengthened in DD, and the rhythm strength was diminished. Immunohistochemistry against pigment-dispersing factor (PDF), a principal neurotransmitter of the Drosophila clock, revealed that PDF levels declined with age. We also found an attenuation of TIMELESS (TIM) oscillation in the cerebral clock neurons in elder flies. Intriguingly, overexpression of PDF suppressed age-associated changes not only in the period and strength of free-running locomotor rhythms but also in the amplitude of TIM oscillations in many pacemaker neurons in the elder flies, suggesting that the age-dependent PDF decline is responsible for the rhythm attenuation. These results suggest that the age-associated reduction of PDF may cause attenuation of intercellular communication in the circadian neuronal network and of TIM cycling, which may result in the age-related rhythm decay.
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Affiliation(s)
- Yujiro Umezaki
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
- Research Institute for Diseases of Old Age, Graduate School of Medicine, Juntendo University, Tokyo, Japan
| | - Taishi Yoshii
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
- Department of Neurobiology and Genetics, Biocenter, University of Würzburg, Germany
| | - Tomoaki Kawaguchi
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
| | | | - Kenji Tomioka
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
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Pirooznia SK, Chiu K, Chan MT, Zimmerman JE, Elefant F. Epigenetic regulation of axonal growth of Drosophila pacemaker cells by histone acetyltransferase tip60 controls sleep. Genetics 2012; 192:1327-45. [PMID: 22982579 PMCID: PMC3512142 DOI: 10.1534/genetics.112.144667] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Accepted: 09/02/2012] [Indexed: 11/18/2022] Open
Abstract
Tip60 is a histone acetyltransferase (HAT) enzyme that epigenetically regulates genes enriched for neuronal functions through interaction with the amyloid precursor protein (APP) intracellular domain. However, whether Tip60-mediated epigenetic dysregulation affects specific neuronal processes in vivo and contributes to neurodegeneration remains unclear. Here, we show that Tip60 HAT activity mediates axonal growth of the Drosophila pacemaker cells, termed "small ventrolateral neurons" (sLNvs), and their production of the neuropeptide pigment-dispersing factor (PDF) that functions to stabilize Drosophila sleep-wake cycles. Using genetic approaches, we show that loss of Tip60 HAT activity in the presence of the Alzheimer's disease-associated APP affects PDF expression and causes retraction of the sLNv synaptic arbor required for presynaptic release of PDF. Functional consequence of these effects is evidenced by disruption of the sleep-wake cycle in these flies. Notably, overexpression of Tip60 in conjunction with APP rescues these sleep-wake disturbances by inducing overelaboration of the sLNv synaptic terminals and increasing PDF levels, supporting a neuroprotective role for dTip60 in sLNv growth and function under APP-induced neurodegenerative conditions. Our findings reveal a novel mechanism for Tip60 mediated sleep-wake regulation via control of axonal growth and PDF levels within the sLNv-encompassing neural network and provide insight into epigenetic-based regulation of sleep disturbances observed in neurodegenerative diseases like Alzheimer's disease.
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Affiliation(s)
| | - Kellie Chiu
- Department of Biology, Drexel University, Philadelphia, Pennsylvania 19104
| | - May T. Chan
- Center for Sleep and Respiratory Neurobiology, University of Pennsylvania School of Medicine,Philadelphia, Pennsylvania 19104
| | - John E. Zimmerman
- Center for Sleep and Respiratory Neurobiology, University of Pennsylvania School of Medicine,Philadelphia, Pennsylvania 19104
| | - Felice Elefant
- Department of Biology, Drexel University, Philadelphia, Pennsylvania 19104
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150
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Dispensable, redundant, complementary, and cooperative roles of dopamine, octopamine, and serotonin in Drosophila melanogaster. Genetics 2012; 193:159-76. [PMID: 23086220 DOI: 10.1534/genetics.112.142042] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
To investigate the regulation of Drosophila melanogaster behavior by biogenic amines, we have exploited the broad requirement of the vesicular monoamine transporter (VMAT) for the vesicular storage and exocytotic release of all monoamine neurotransmitters. We used the Drosophila VMAT (dVMAT) null mutant to globally ablate exocytotic amine release and then restored DVMAT activity in either individual or multiple aminergic systems, using transgenic rescue techniques. We find that larval survival, larval locomotion, and female fertility rely predominantly on octopaminergic circuits with little apparent input from the vesicular release of serotonin or dopamine. In contrast, male courtship and fertility can be rescued by expressing DVMAT in octopaminergic or dopaminergic neurons, suggesting potentially redundant circuits. Rescue of major aspects of adult locomotion and startle behavior required octopamine, but a complementary role was observed for serotonin. Interestingly, adult circadian behavior could not be rescued by expression of DVMAT in a single subtype of aminergic neurons, but required at least two systems, suggesting the possibility of unexpected cooperative interactions. Further experiments using this model will help determine how multiple aminergic systems may contribute to the regulation of other behaviors. Our data also highlight potential differences between behaviors regulated by standard exocytotic release and those regulated by other mechanisms.
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