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For: Raymond J, Zhaxybayeva O, Gogarten JP, Gerdes SY, Blankenship RE. Whole-genome analysis of photosynthetic prokaryotes. Science 2002;298:1616-20. [PMID: 12446909 DOI: 10.1126/science.1075558] [Citation(s) in RCA: 216] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Number Cited by Other Article(s)
101
Kalia VC, Lal S, Cheema S. Insight in to the phylogeny of polyhydroxyalkanoate biosynthesis: Horizontal gene transfer. Gene 2007;389:19-26. [PMID: 17113245 DOI: 10.1016/j.gene.2006.09.010] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2006] [Revised: 06/29/2006] [Accepted: 09/25/2006] [Indexed: 11/26/2022]
102
Sato N. Origin and Evolution of Plastids: Genomic View on the Unification and Diversity of Plastids. ADVANCES IN PHOTOSYNTHESIS AND RESPIRATION 2007. [DOI: 10.1007/978-1-4020-4061-0_4] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
103
Hu Y, Du H, Jiao N, Zeng Y. Abundant presence of the gamma-like Proteobacterial pufM gene in oxic seawater. FEMS Microbiol Lett 2006;263:200-6. [PMID: 16978357 DOI: 10.1111/j.1574-6968.2006.00421.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
104
Beiko RG, Keith JM, Harlow TJ, Ragan MA. Searching for convergence in phylogenetic Markov chain Monte Carlo. Syst Biol 2006;55:553-65. [PMID: 16857650 DOI: 10.1080/10635150600812544] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]  Open
105
Ludwig M, Schulz-Friedrich R, Appel J. Occurrence of hydrogenases in cyanobacteria and anoxygenic photosynthetic bacteria: implications for the phylogenetic origin of cyanobacterial and algal hydrogenases. J Mol Evol 2006;63:758-68. [PMID: 17103058 DOI: 10.1007/s00239-006-0001-6] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2006] [Accepted: 08/17/2006] [Indexed: 10/23/2022]
106
Bryant DA, Frigaard NU. Prokaryotic photosynthesis and phototrophy illuminated. Trends Microbiol 2006;14:488-96. [PMID: 16997562 DOI: 10.1016/j.tim.2006.09.001] [Citation(s) in RCA: 307] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2006] [Revised: 07/28/2006] [Accepted: 09/07/2006] [Indexed: 12/01/2022]
107
Mulkidjanian AY, Koonin EV, Makarova KS, Mekhedov SL, Sorokin A, Wolf YI, Dufresne A, Partensky F, Burd H, Kaznadzey D, Haselkorn R, Galperin MY. The cyanobacterial genome core and the origin of photosynthesis. Proc Natl Acad Sci U S A 2006;103:13126-31. [PMID: 16924101 PMCID: PMC1551899 DOI: 10.1073/pnas.0605709103] [Citation(s) in RCA: 196] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
108
Bern M, Goldberg D, Lyashenko E. Data mining for proteins characteristic of clades. Nucleic Acids Res 2006;34:4342-53. [PMID: 16936320 PMCID: PMC1636346 DOI: 10.1093/nar/gkl440] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2005] [Revised: 04/18/2006] [Accepted: 06/05/2006] [Indexed: 12/03/2022]  Open
109
Cavalier-Smith T. Rooting the tree of life by transition analyses. Biol Direct 2006;1:19. [PMID: 16834776 PMCID: PMC1586193 DOI: 10.1186/1745-6150-1-19] [Citation(s) in RCA: 143] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2006] [Accepted: 07/11/2006] [Indexed: 12/21/2022]  Open
110
Kechris KJ, Lin JC, Bickel PJ, Glazer AN. Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study. Proc Natl Acad Sci U S A 2006;103:9584-9. [PMID: 16769896 PMCID: PMC1480450 DOI: 10.1073/pnas.0603534103] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
111
Mau B, Glasner JD, Darling AE, Perna NT. Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. Genome Biol 2006;7:R44. [PMID: 16737554 PMCID: PMC1779527 DOI: 10.1186/gb-2006-7-5-r44] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2005] [Revised: 02/08/2006] [Accepted: 05/08/2006] [Indexed: 11/10/2022]  Open
112
Gerdes SY, Kurnasov OV, Shatalin K, Polanuyer B, Sloutsky R, Vonstein V, Overbeek R, Osterman AL. Comparative genomics of NAD biosynthesis in cyanobacteria. J Bacteriol 2006;188:3012-23. [PMID: 16585762 PMCID: PMC1446974 DOI: 10.1128/jb.188.8.3012-3023.2006] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2005] [Accepted: 01/23/2006] [Indexed: 11/20/2022]  Open
113
Lebrun E, Santini JM, Brugna M, Ducluzeau AL, Ouchane S, Schoepp-Cothenet B, Baymann F, Nitschke W. The Rieske Protein: A Case Study on the Pitfalls of Multiple Sequence Alignments and Phylogenetic Reconstruction. Mol Biol Evol 2006;23:1180-91. [PMID: 16569761 DOI: 10.1093/molbev/msk010] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
114
Susko E, Leigh J, Doolittle WF, Bapteste E. Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the gamma-proteobacteria. Mol Biol Evol 2006;23:1019-30. [PMID: 16495350 DOI: 10.1093/molbev/msj113] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
115
Waidner LA, Kirchman DL. Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environ Microbiol 2006;7:1896-908. [PMID: 16309388 DOI: 10.1111/j.1462-2920.2005.00883.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
116
Xiong J. Photosynthesis: what color was its origin? Genome Biol 2006;7:245. [PMID: 17210067 PMCID: PMC1794423 DOI: 10.1186/gb-2006-7-12-245] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
117
Hsiao WWL, Ung K, Aeschliman D, Bryan J, Finlay BB, Brinkman FSL. Evidence of a large novel gene pool associated with prokaryotic genomic islands. PLoS Genet 2005;1:e62. [PMID: 16299586 PMCID: PMC1285063 DOI: 10.1371/journal.pgen.0010062] [Citation(s) in RCA: 151] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2005] [Accepted: 10/13/2005] [Indexed: 11/21/2022]  Open
118
Nelson N, Ben-Shem A. The structure of photosystem I and evolution of photosynthesis. Bioessays 2005;27:914-22. [PMID: 16108066 DOI: 10.1002/bies.20278] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
119
Yu GX, Park BH, Chandramohan P, Geist A, Samatova NF. An evolution-based analysis scheme to identify CO2/O2 specificity-determining factors for ribulose 1,5-bisphosphate carboxylase/oxygenase. Protein Eng Des Sel 2005;18:589-96. [PMID: 16246824 DOI: 10.1093/protein/gzi065] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
120
Beiko RG, Harlow TJ, Ragan MA. Highways of gene sharing in prokaryotes. Proc Natl Acad Sci U S A 2005;102:14332-7. [PMID: 16176988 PMCID: PMC1242295 DOI: 10.1073/pnas.0504068102] [Citation(s) in RCA: 357] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
121
Gogarten JP, Townsend JP. Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 2005;3:679-87. [PMID: 16138096 DOI: 10.1038/nrmicro1204] [Citation(s) in RCA: 619] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
122
Doolittle RF. Evolutionary aspects of whole-genome biology. Curr Opin Struct Biol 2005;15:248-53. [PMID: 15963888 DOI: 10.1016/j.sbi.2005.04.001] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2005] [Revised: 02/08/2005] [Accepted: 04/12/2005] [Indexed: 11/28/2022]
123
Ge F, Wang LS, Kim J. The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. PLoS Biol 2005;3:e316. [PMID: 16122348 PMCID: PMC1233574 DOI: 10.1371/journal.pbio.0030316] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2005] [Accepted: 07/11/2005] [Indexed: 11/18/2022]  Open
124
Tuschak C, Leung MM, Beatty JT, Overmann J. The puf operon of the purple sulfur bacterium Amoebobacter purpureus: structure, transcription and phylogenetic analysis. Arch Microbiol 2005;183:431-43. [PMID: 16025309 DOI: 10.1007/s00203-005-0016-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2005] [Revised: 05/20/2005] [Accepted: 05/31/2005] [Indexed: 10/25/2022]
125
Hamel L, Zhaxybayeva O, Gogarten JP. PentaPlot: a software tool for the illustration of genome mosaicism. BMC Bioinformatics 2005;6:139. [PMID: 15938752 PMCID: PMC1177926 DOI: 10.1186/1471-2105-6-139] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2005] [Accepted: 06/06/2005] [Indexed: 12/02/2022]  Open
126
Coenye T, Vandamme P. Displacement of ɛ-proteobacterial core genes by horizontally transferred homologous genes. Res Microbiol 2005;156:738-47. [PMID: 15950129 DOI: 10.1016/j.resmic.2005.01.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2004] [Revised: 01/13/2005] [Accepted: 01/28/2005] [Indexed: 11/15/2022]
127
Bern M, Goldberg D. Automatic selection of representative proteins for bacterial phylogeny. BMC Evol Biol 2005;5:34. [PMID: 15927057 PMCID: PMC1175084 DOI: 10.1186/1471-2148-5-34] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2004] [Accepted: 05/31/2005] [Indexed: 11/22/2022]  Open
128
Simonson AB, Servin JA, Skophammer RG, Herbold CW, Rivera MC, Lake JA. Decoding the genomic tree of life. Proc Natl Acad Sci U S A 2005;102 Suppl 1:6608-13. [PMID: 15851667 PMCID: PMC1131872 DOI: 10.1073/pnas.0501996102] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
129
Mix LJ, Haig D, Cavanaugh CM. Phylogenetic analyses of the core antenna domain: investigating the origin of photosystem I. J Mol Evol 2005;60:153-63. [PMID: 15785845 DOI: 10.1007/s00239-003-0181-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2003] [Accepted: 07/29/2004] [Indexed: 10/25/2022]
130
Blair JE, Shah P, Hedges SB. Evolutionary sequence analysis of complete eukaryote genomes. BMC Bioinformatics 2005;6:53. [PMID: 15762985 PMCID: PMC1274250 DOI: 10.1186/1471-2105-6-53] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2004] [Accepted: 03/11/2005] [Indexed: 11/29/2022]  Open
131
Page KA, Connon SA, Giovannoni SJ. Representative freshwater bacterioplankton isolated from Crater Lake, Oregon. Appl Environ Microbiol 2005;70:6542-50. [PMID: 15528517 PMCID: PMC525233 DOI: 10.1128/aem.70.11.6542-6550.2004] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
132
Schwarz S, Kehrenberg C, Doublet B, Cloeckaert A. Molecular basis of bacterial resistance to chloramphenicol and florfenicol. FEMS Microbiol Rev 2005;28:519-42. [PMID: 15539072 DOI: 10.1016/j.femsre.2004.04.001] [Citation(s) in RCA: 458] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2004] [Revised: 04/05/2004] [Accepted: 04/17/2004] [Indexed: 11/21/2022]  Open
133
Nelson N, Ben-Shem A. The complex architecture of oxygenic photosynthesis. Nat Rev Mol Cell Biol 2005;5:971-82. [PMID: 15573135 DOI: 10.1038/nrm1525] [Citation(s) in RCA: 401] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
134
Mizoguchi T, Oh-oka H, Tamiaki H. Determination of Stereochemistry of Bacteriochlorophyll gF and 81-Hydroxy-chlorophyll aF from Heliobacterium modesticaldum¶. Photochem Photobiol 2005. [DOI: 10.1562/2004-09-11-ra-315.1] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
135
Thornton LE, Keren N, Ohad I, Pakrasi HB. Physcomitrella patens and Ceratodon purpureus, mosses as model organisms in photosynthesis studies. PHOTOSYNTHESIS RESEARCH 2005;83:87-96. [PMID: 16143910 DOI: 10.1007/s11120-004-5577-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2004] [Accepted: 10/29/2004] [Indexed: 05/04/2023]
136
A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol Biol 2004;4:44. [PMID: 15535883 PMCID: PMC533871 DOI: 10.1186/1471-2148-4-44] [Citation(s) in RCA: 329] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2004] [Accepted: 11/09/2004] [Indexed: 11/10/2022]  Open
137
Galperin MY, Koonin EV. 'Conserved hypothetical' proteins: prioritization of targets for experimental study. Nucleic Acids Res 2004;32:5452-63. [PMID: 15479782 PMCID: PMC524295 DOI: 10.1093/nar/gkh885] [Citation(s) in RCA: 309] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
138
Frigaard NU, Bryant DA. Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria. Arch Microbiol 2004;182:265-76. [PMID: 15340781 DOI: 10.1007/s00203-004-0718-9] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2004] [Revised: 07/21/2004] [Accepted: 07/22/2004] [Indexed: 10/26/2022]
139
Bidle KD, Falkowski PG. Cell death in planktonic, photosynthetic microorganisms. Nat Rev Microbiol 2004;2:643-55. [PMID: 15263899 DOI: 10.1038/nrmicro956] [Citation(s) in RCA: 169] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
140
Thornton LE, Ohkawa H, Roose JL, Kashino Y, Keren N, Pakrasi HB. Homologs of plant PsbP and PsbQ proteins are necessary for regulation of photosystem ii activity in the cyanobacterium Synechocystis 6803. THE PLANT CELL 2004;16:2164-75. [PMID: 15258264 PMCID: PMC519205 DOI: 10.1105/tpc.104.023515] [Citation(s) in RCA: 144] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2004] [Accepted: 05/05/2004] [Indexed: 05/20/2023]
141
Ortutay C, Gáspári Z, Tóth G, Jáger E, Vida G, Orosz L, Vellai T. Speciation in Chlamydia: genomewide phylogenetic analyses identified a reliable set of acquired genes. J Mol Evol 2004;57:672-80. [PMID: 14745536 DOI: 10.1007/s00239-003-2517-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2002] [Accepted: 06/09/2003] [Indexed: 10/26/2022]
142
Falkowski PG, Katz ME, Knoll AH, Quigg A, Raven JA, Schofield O, Taylor FJR. The Evolution of Modern Eukaryotic Phytoplankton. Science 2004;305:354-60. [PMID: 15256663 DOI: 10.1126/science.1095964] [Citation(s) in RCA: 666] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
143
Raymond J, Blankenship RE. The evolutionary development of the protein complement of photosystem 2. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2004;1655:133-9. [PMID: 15100025 DOI: 10.1016/j.bbabio.2003.10.015] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2003] [Accepted: 10/21/2003] [Indexed: 10/26/2022]
144
Pradella S, Allgaier M, Hoch C, Päuker O, Stackebrandt E, Wagner-Döbler I. Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria. Appl Environ Microbiol 2004;70:3360-9. [PMID: 15184132 PMCID: PMC427745 DOI: 10.1128/aem.70.6.3360-3369.2004] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2003] [Accepted: 02/04/2004] [Indexed: 11/20/2022]  Open
145
Celamkoti S, Kundeti S, Purkayastha A, Mazumder R, Buck C, Seto D. GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes. BMC Bioinformatics 2004;5:52. [PMID: 15128433 PMCID: PMC419981 DOI: 10.1186/1471-2105-5-52] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2004] [Accepted: 05/05/2004] [Indexed: 11/10/2022]  Open
146
Zhaxybayeva O, Lapierre P, Gogarten JP. Genome mosaicism and organismal lineages. Trends Genet 2004;20:254-60. [PMID: 15109780 DOI: 10.1016/j.tig.2004.03.009] [Citation(s) in RCA: 78] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
147
Martin AP, Costello EK, Meyer AF, Nemergut DR, Schmidt SK. THE RATE AND PATTERN OF CLADOGENESIS IN MICROBES. Evolution 2004;58:946-55. [PMID: 15212376 DOI: 10.1111/j.0014-3820.2004.tb00429.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
148
Harlow TJ, Gogarten JP, Ragan MA. A hybrid clustering approach to recognition of protein families in 114 microbial genomes. BMC Bioinformatics 2004;5:45. [PMID: 15115543 PMCID: PMC420232 DOI: 10.1186/1471-2105-5-45] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2003] [Accepted: 04/29/2004] [Indexed: 11/29/2022]  Open
149
Zhaxybayeva O, Hamel L, Raymond J, Gogarten JP. Visualization of the phylogenetic content of five genomes using dekapentagonal maps. Genome Biol 2004;5:R20. [PMID: 15003123 PMCID: PMC395770 DOI: 10.1186/gb-2004-5-3-r20] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2003] [Revised: 12/18/2003] [Accepted: 01/13/2004] [Indexed: 11/12/2022]  Open
150
Ospina-Giraldo MD, Jones RW. Characterization of the glucose-6-phosphate isomerase gene in Phytophthora infestans reveals the presence of multiple alleles. Fungal Genet Biol 2004;40:197-206. [PMID: 14599887 DOI: 10.1016/s1087-1845(03)00107-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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