1
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Zhang B, Ma Y, Duan W, Fan Q, Sun J. Pinewood nematode induced changes in the assembly process of gallery microbiomes benefit its vector beetle's development. Microbiol Spectr 2024:e0141224. [PMID: 39258937 DOI: 10.1128/spectrum.01412-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 08/03/2024] [Indexed: 09/12/2024] Open
Abstract
Microbiomes play crucial roles in insect adaptation, especially under stress such as pathogen invasion. Yet, how beneficial microbiomes assemble remains unclear. The wood-boring beetle Monochamus alternatus, a major pest and vector of the pine wilt disease (PWD) nematode, offers a unique model. We conducted controlled experiments using amplicon sequencing (16S rRNA and ITS) within galleries where beetles and microbes interact. PWD significantly altered bacterial and fungal communities, suggesting distinct assembly processes. Deterministic factors like priority effects, host selection, and microbial interactions shaped microbiome composition, distinguishing healthy from PWN-infected galleries. Actinobacteria, Firmicutes, and Ophiostomataceae emerged as potentially beneficial, aiding beetle's development and pathogen resistance. This study unveils how nematode-induced changes in gallery microbiomes influence beetle's development, shedding light on microbiome assembly amid insect-pathogen interactions. Insights gleaned enhance understanding of PWD spread and suggest novel management strategies via microbiome manipulation.IMPORTANCEThis study explores the assembly process of gallery microbiomes associated with a wood-boring beetles, Monochamus alternatus, a vector of the pine wilt disease (PWD). By conducting controlled comparison experiments and employing amplicon approaches, the study reveals significant changes in taxonomic composition and functional adaptation of bacterial and fungal communities induced by PWD. It identifies deterministic processes, including priority effects, host selection, and microbial interactions, as major drivers in microbiome assembly. Additionally, the study highlights the presence of potentially beneficial microbes such as Actinobacteria, Firmicutes, and Ophiostomataceae, which could enhance beetle development and resistance to pathogens. These findings shed light on the intricate interplay among insects, microbiomes, and pathogens, contributing to a deeper understanding of PWD prevalence and suggesting innovative management strategies through microbiome manipulation.
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Affiliation(s)
- Bin Zhang
- College of Life Science/Hebei Basic Science Center for Biotic Interactions, Institute of Life Science and Green Development, Hebei University, Baoding, China
| | - Yafei Ma
- College of Life Science/Hebei Basic Science Center for Biotic Interactions, Institute of Life Science and Green Development, Hebei University, Baoding, China
| | - Wenzhao Duan
- College of Life Science/Hebei Basic Science Center for Biotic Interactions, Institute of Life Science and Green Development, Hebei University, Baoding, China
| | - Qi Fan
- College of Life Science/Hebei Basic Science Center for Biotic Interactions, Institute of Life Science and Green Development, Hebei University, Baoding, China
| | - Jianghua Sun
- College of Life Science/Hebei Basic Science Center for Biotic Interactions, Institute of Life Science and Green Development, Hebei University, Baoding, China
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
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2
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Fronhofer EA, Bonte D, Bestion E, Cote J, Deshpande JN, Duncan AB, Hovestadt T, Kaltz O, Keith SA, Kokko H, Legrand D, Malusare SP, Parmentier T, Saade C, Schtickzelle N, Zilio G, Massol F. Evolutionary ecology of dispersal in biodiverse spatially structured systems: what is old and what is new? Philos Trans R Soc Lond B Biol Sci 2024; 379:20230142. [PMID: 38913061 PMCID: PMC11391287 DOI: 10.1098/rstb.2023.0142] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 03/14/2024] [Accepted: 05/01/2024] [Indexed: 06/25/2024] Open
Abstract
Dispersal is a well-recognized driver of ecological and evolutionary dynamics, and simultaneously an evolving trait. Dispersal evolution has traditionally been studied in single-species metapopulations so that it remains unclear how dispersal evolves in metacommunities and metafoodwebs, which are characterized by a multitude of species interactions. Since most natural systems are both species-rich and spatially structured, this knowledge gap should be bridged. Here, we discuss whether knowledge from dispersal evolutionary ecology established in single-species systems holds in metacommunities and metafoodwebs and we highlight generally valid and fundamental principles. Most biotic interactions form the backdrop to the ecological theatre for the evolutionary dispersal play because interactions mediate patterns of fitness expectations across space and time. While this allows for a simple transposition of certain known principles to a multispecies context, other drivers may require more complex transpositions, or might not be transferred. We discuss an important quantitative modulator of dispersal evolution-increased trait dimensionality of biodiverse meta-systems-and an additional driver: co-dispersal. We speculate that scale and selection pressure mismatches owing to co-dispersal, together with increased trait dimensionality, may lead to a slower and more 'diffuse' evolution in biodiverse meta-systems. Open questions and potential consequences in both ecological and evolutionary terms call for more investigation. This article is part of the theme issue 'Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics'.
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Affiliation(s)
- Emanuel A Fronhofer
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | - Dries Bonte
- Terrestrial Ecology Unit (TEREC), Department of Biology, Ghent University, K.L. Ledeganckstraat 35 , Ghent B-9000, Belgium
| | - Elvire Bestion
- Station d'Ecologie Théorique et Expérimentale, CNRS, UAR 2029 , Moulis F-09200, France
| | - Julien Cote
- Laboratoire Évolution & Diversité Biologique, CNRS, Université Toulouse III Paul Sabatier, IRD, UMR 5174, 118 route de Narbonne , Toulouse F-31062, France
| | - Jhelam N Deshpande
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | - Alison B Duncan
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | - Thomas Hovestadt
- Department Animal Ecology and Tropical Biology, Biozentrum, University of Würzburg , Würzburg 97074, Germany
| | - Oliver Kaltz
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | - Sally A Keith
- Lancaster Environment Centre, Lancaster University , Lancaster LA1 4YQ, UK
| | - Hanna Kokko
- Institute of Organismic and Molecular Evolution, Johannes Gutenberg University , Mainz 55128, Germany
| | - Delphine Legrand
- Station d'Ecologie Théorique et Expérimentale, CNRS, UAR 2029 , Moulis F-09200, France
| | - Sarthak P Malusare
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | - Thomas Parmentier
- Terrestrial Ecology Unit (TEREC), Department of Biology, Ghent University, K.L. Ledeganckstraat 35 , Ghent B-9000, Belgium
- Research Unit of Environmental and Evolutionary Biology, Namur Institute of Complex Systems, and Institute of Life, Earth, and the Environment, University of Namur , Namur 5000, Belgium
| | - Camille Saade
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | | | - Giacomo Zilio
- ISEM, University of Montpellier, CNRS, IRD, EPHE , Montpellier 34095, France
| | - François Massol
- Institut Pasteur de Lille, Univ. Lille, CNRS, Inserm, CHU Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille , Lille 59000, France
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3
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Holt JR, Cavichiolli de Oliveira N, Medina RF, Malacrinò A, Lindsey ARI. Insect-microbe interactions and their influence on organisms and ecosystems. Ecol Evol 2024; 14:e11699. [PMID: 39041011 PMCID: PMC11260886 DOI: 10.1002/ece3.11699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 06/14/2024] [Accepted: 06/21/2024] [Indexed: 07/24/2024] Open
Abstract
Microorganisms are important associates of insect and arthropod species. Insect-associated microbes, including bacteria, fungi, and viruses, can drastically impact host physiology, ecology, and fitness, while many microbes still have no known role. Over the past decade, we have increased our knowledge of the taxonomic composition and functional roles of insect-associated microbiomes and viromes. There has been a more recent shift toward examining the complexity of microbial communities, including how they vary in response to different factors (e.g., host genome, microbial strain, environment, and time), and the consequences of this variation for the host and the wider ecological community. We provide an overview of insect-microbe interactions, the variety of associated microbial functions, and the evolutionary ecology of these relationships. We explore the influence of the environment and the interactive effects of insects and their microbiomes across trophic levels. Additionally, we discuss the potential for subsequent synergistic and reciprocal impacts on the associated microbiomes, ecological interactions, and communities. Lastly, we discuss some potential avenues for the future of insect-microbe interactions that include the modification of existing microbial symbionts as well as the construction of synthetic microbial communities.
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Affiliation(s)
| | | | - Raul F. Medina
- Department of EntomologyTexas A&M University, Minnie Bell Heep CenterCollege StationTexasUSA
| | - Antonino Malacrinò
- Department of AgricultureUniversità Degli Studi Mediterranea di Reggio CalabriaReggio CalabriaItaly
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4
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Su C, Xie T, Jiang L, Wang Y, Wang Y, Nie R, Zhao Y, He B, Ma J, Yang Q, Hao J. Host genetics and larval host plant modulate microbiome structure and evolution underlying the intimate insect-microbe-plant interactions in Parnassius species on the Qinghai-Tibet Plateau. Ecol Evol 2024; 14:e11218. [PMID: 38606343 PMCID: PMC11007261 DOI: 10.1002/ece3.11218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 02/09/2024] [Accepted: 03/20/2024] [Indexed: 04/13/2024] Open
Abstract
Insects harbor a remarkable diversity of gut microbiomes critical for host survival, health, and fitness, but the mechanism of this structured symbiotic community remains poorly known, especially for the insect group consisting of many closely related species that inhabit the Qinghai-Tibet Plateau. Here, we firstly analyzed population-level 16S rRNA microbial dataset, comprising 11 Parnassius species covering 5 subgenera, from 14 populations mostly sampled in mountainous regions across northwestern-to-southeastern China, and meanwhile clarified the relative importance of multiple factors on gut microbial community structure and evolution. Our findings indicated that both host genetics and larval host plant modulated gut microbial diversity and community structure. Moreover, the effect analysis of host genetics and larval diet on gut microbiomes showed that host genetics played a critical role in governing the gut microbial beta diversity and the symbiotic community structure, while larval host plant remarkably influenced the functional evolution of gut microbiomes. These findings of the intimate insect-microbe-plant interactions jointly provide some new insights into the correlation among the host genetic background, larval host plant, the structure and evolution of gut microbiome, as well as the mechanisms of high-altitude adaptation in closely related species of this alpine butterfly group.
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Affiliation(s)
- Chengyong Su
- College of Life SciencesAnhui Normal UniversityWuhuChina
| | - Tingting Xie
- College of Life SciencesAnhui Normal UniversityWuhuChina
| | - Lijun Jiang
- College of Life SciencesAnhui Normal UniversityWuhuChina
| | - Yunliang Wang
- College of Life SciencesAnhui Normal UniversityWuhuChina
- College of Physical EducationAnhui Normal UniversityWuhuChina
| | - Ying Wang
- College of Life SciencesAnhui Normal UniversityWuhuChina
- College of Physical EducationAnhui Normal UniversityWuhuChina
| | - Ruie Nie
- College of Life SciencesAnhui Normal UniversityWuhuChina
| | - Youjie Zhao
- College of Life SciencesAnhui Normal UniversityWuhuChina
| | - Bo He
- College of Life SciencesAnhui Normal UniversityWuhuChina
| | - Junye Ma
- Key Laboratory of Palaeobiology and Petroleum Stratigraphy, Center for Excellence in Life and Palaeoenvironment, Nanjing Institute of Geology and PaleontologyChinese Academy of SciencesNanjingChina
| | - Qun Yang
- Key Laboratory of Palaeobiology and Petroleum Stratigraphy, Center for Excellence in Life and Palaeoenvironment, Nanjing Institute of Geology and PaleontologyChinese Academy of SciencesNanjingChina
- Nanjing CollegeUniversity of Chinese Academy of SciencesNanjingChina
| | - Jiasheng Hao
- College of Life SciencesAnhui Normal UniversityWuhuChina
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5
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Gillespie RG, Bik HM, Hickerson MJ, Krehenwinkel H, Overcast I, Rominger AJ. Insights into Ecological & Evolutionary Processes via community metabarcoding. Mol Ecol 2023; 32:6083-6092. [PMID: 37999451 DOI: 10.1111/mec.17208] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 10/05/2023] [Accepted: 11/03/2023] [Indexed: 11/25/2023]
Affiliation(s)
- Rosemary G Gillespie
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, California, USA
| | - Holly M Bik
- Department of Marine Sciences and Institute of Bioinformatics, University of Georgia, Athens, Georgia, USA
| | - Michael J Hickerson
- Graduate Center of the City University of New York, New York City, New York, USA
- Biology Department, City College of New York, New York City, New York, USA
- Division of Invertebrate Zoology, American Museum of Natural History, New York City, New York, USA
| | | | - Isaac Overcast
- School of Biology and Ecology, University of Maine, Orono, Maine, USA
- Department of Vertebrate Zoology, Division of Invertebrate Zoology, American Museum of Natural History, New York City, New York, USA
- California Academy of Sciences, San Francisco, California, USA
| | - Andrew J Rominger
- School of Biology and Ecology, University of Maine, Orono, Maine, USA
- School of Life Sciences, University of Hawai'i at Mānoa, Honolulu, Hawaii, USA
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6
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Lange C, Boyer S, Bezemer TM, Lefort MC, Dhami MK, Biggs E, Groenteman R, Fowler SV, Paynter Q, Verdecia Mogena AM, Kaltenpoth M. Impact of intraspecific variation in insect microbiomes on host phenotype and evolution. THE ISME JOURNAL 2023; 17:1798-1807. [PMID: 37660231 PMCID: PMC10579242 DOI: 10.1038/s41396-023-01500-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 08/20/2023] [Accepted: 08/22/2023] [Indexed: 09/04/2023]
Abstract
Microbes can be an important source of phenotypic plasticity in insects. Insect physiology, behaviour, and ecology are influenced by individual variation in the microbial communities held within the insect gut, reproductive organs, bacteriome, and other tissues. It is becoming increasingly clear how important the insect microbiome is for insect fitness, expansion into novel ecological niches, and novel environments. These investigations have garnered heightened interest recently, yet a comprehensive understanding of how intraspecific variation in the assembly and function of these insect-associated microbial communities can shape the plasticity of insects is still lacking. Most research focuses on the core microbiome associated with a species of interest and ignores intraspecific variation. We argue that microbiome variation among insects can be an important driver of evolution, and we provide examples showing how such variation can influence fitness and health of insects, insect invasions, their persistence in new environments, and their responses to global environmental changes. A and B are two stages of an individual or a population of the same species. The drivers lead to a shift in the insect associated microbial community, which has consequences for the host. The complex interplay of those consequences affects insect adaptation and evolution and influences insect population resilience or invasion.
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Affiliation(s)
- Claudia Lange
- Manaaki Whenua Landcare Research, Lincoln, New Zealand.
| | - Stéphane Boyer
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261 CNRS - Université de Tours, Tours, France
| | - T Martijn Bezemer
- Above-Belowground Interactions Group, Institute of Biology, Leiden University, Leiden, The Netherlands
| | | | | | - Eva Biggs
- Manaaki Whenua Landcare Research, Lincoln, New Zealand
| | | | | | | | | | - Martin Kaltenpoth
- Department of Insect Symbiosis, Max Planck Institute for Chemical Ecology, Jena, Germany
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7
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de Castro P, Urbina F, Norambuena A, Guzmán-Lastra F. Sequential epidemic-like spread between agglomerates of self-propelled agents in one dimension. Phys Rev E 2023; 108:044104. [PMID: 37978653 DOI: 10.1103/physreve.108.044104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 09/13/2023] [Indexed: 11/19/2023]
Abstract
Motile organisms can form stable agglomerates such as cities or colonies. In the outbreak of a highly contagious disease, the control of large-scale epidemic spread depends on factors like the number and size of agglomerates, travel rate between them, and disease recovery rate. While the emergence of agglomerates permits early interventions, it also explains longer real epidemics. In this work, we study the spread of susceptible-infected-recovered (SIR) epidemics (or any sort of information exchange by contact) in one-dimensional spatially structured systems. By working in one dimension, we establish a necessary foundation for future investigation in higher dimensions and mimic micro-organisms in narrow channels. We employ a model of self-propelled particles which spontaneously form multiple clusters. For a lower rate of stochastic reorientation, particles have a higher tendency to agglomerate and therefore the clusters become larger and less numerous. We examine the time evolution averaged over many epidemics and how it is affected by the existence of clusters through the eventual recovery of infected particles before reaching new clusters. New terms appear in the SIR differential equations in the last epidemic stages. We show how the final number of ever-infected individuals depends nontrivially on single-individual parameters. In particular, the number of ever-infected individuals first increases with the reorientation rate since particles escape sooner from clusters and spread the disease. For higher reorientation rate, travel between clusters becomes too diffusive and the clusters too small, decreasing the number of ever-infected individuals.
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Affiliation(s)
- Pablo de Castro
- ICTP-South American Institute for Fundamental Research - Instituto de Física Teórica da UNESP, Rua Dr. Bento Teobaldo Ferraz 271, 01140-070 São Paulo, Brazil
| | - Felipe Urbina
- Centro Multidisciplinario de Física, Universidad Mayor, Huechuraba, 8580745 Santiago, Chile
| | - Ariel Norambuena
- Centro Multidisciplinario de Física, Universidad Mayor, Huechuraba, 8580745 Santiago, Chile
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8
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Guilhot R, Xuéreb A, Lagmairi A, Olazcuaga L, Fellous S. Microbiota acquisition and transmission in Drosophila flies. iScience 2023; 26:107656. [PMID: 37670792 PMCID: PMC10475513 DOI: 10.1016/j.isci.2023.107656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 06/19/2023] [Accepted: 08/15/2023] [Indexed: 09/07/2023] Open
Abstract
Understanding the ecological and evolutionary dynamics of host-microbiota associations notably involves exploring how members of the microbiota assemble and whether they are transmitted along host generations. Here, we investigate the larval acquisition of facultative bacterial and yeast symbionts of Drosophila melanogaster and Drosophila suzukii in ecologically realistic setups. Fly mothers and fruit were major sources of symbionts. Microorganisms associated with adult males also contributed to larval microbiota, mostly in D. melanogaster. Yeasts acquired at the larval stage maintained through metamorphosis, adult life, and were transmitted to offspring. All these observations varied widely among microbial strains, suggesting they have different transmission strategies among fruits and insects. Our approach shows microbiota members of insects can be acquired from a diversity of sources and highlights the compound nature of microbiotas. Such microbial transmission events along generations should favor the evolution of mutualistic interactions and enable microbiota-mediated local adaptation of the insect host.
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Affiliation(s)
- Robin Guilhot
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, University of Montpellier, 34000 Montpellier, France
| | - Anne Xuéreb
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, University of Montpellier, 34000 Montpellier, France
| | - Auxane Lagmairi
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, University of Montpellier, 34000 Montpellier, France
| | - Laure Olazcuaga
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, University of Montpellier, 34000 Montpellier, France
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Simon Fellous
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, University of Montpellier, 34000 Montpellier, France
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9
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Ogata S, Umemiya-Shirafuji R, Kusakisako K, Kakisaka K, Chatanga E, Hayashi N, Taya Y, Ohari Y, Pandey GS, Abdelbaset AE, Qiu Y, Matsuno K, Nonaka N, Nakao R. Investigation of vertical and horizontal transmission of Spiroplasma in ticks under laboratory conditions. Sci Rep 2023; 13:13265. [PMID: 37582809 PMCID: PMC10427632 DOI: 10.1038/s41598-023-39128-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Accepted: 07/20/2023] [Indexed: 08/17/2023] Open
Abstract
Many arthropods harbour bacterial symbionts, which are maintained by vertical and/or horizontal transmission. Spiroplasma is one of the most well-known symbionts of ticks and other arthropods. It is still unclear how Spiroplasma infections have spread in tick populations despite its high prevalence in some tick species. In this study, Ixodes ovatus, which has been reported to harbour Spiroplasma ixodetis at high frequencies, was examined for its vertical transmission potential under experimental conditions. Next, two isolates of tick-derived Spiroplasma, S. ixodetis and Spiroplasma mirum, were experimentally inoculated into Spiroplasma-free Haemaphysalis longicornis colonies and the presence of Spiroplasma in their eggs and larvae was tested. Our experimental data confirmed that S. ixodetis was transmitted to eggs and larvae in a vertical manner in the original host I. ovatus. In the second experiment, there was no significant difference in engorged weight, egg weight, and hatching rate between Spiroplasma-inoculated and control H. longicornis groups. This suggested that Spiroplasma infection does not affect tick reproduction. Spiroplasma DNA was only detected in the eggs and larvae derived from some individuals of S. ixodetis-inoculated groups. This has demonstrated the potential of horizontal transmission between different tick species. These findings may help understand the transmission dynamics of Spiroplasma in nature and its adaptation mechanism to host arthropod species.
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Affiliation(s)
- Shohei Ogata
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
- Laboratory of Molecular Targeted Therapeutics, School of Pharmacy, Nihon University, Chiba, 274-8555, Japan
- Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, Sapporo, 001-0020, Japan
| | - Rika Umemiya-Shirafuji
- National Research Center for Protozoan Diseases, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, 080-8555, Japan
| | - Kodai Kusakisako
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
- Laboratory of Veterinary Parasitology, School of Veterinary Medicine, Kitasato University, Towada, 034-8628, Japan
| | - Keita Kakisaka
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
| | - Elisha Chatanga
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Lilongwe University of Agriculture and Natural Resources, P.O. Box 219, Lilongwe, Malawi
| | - Naoki Hayashi
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
| | - Yurie Taya
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
| | - Yuma Ohari
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
- School of Veterinary Medicine, Rakuno Gakuen University, Ebetsu, 069-8501, Japan
| | - Gita Sadaula Pandey
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
| | - Abdelbaset Eweda Abdelbaset
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
- Department of Animal Medicine, Clinical Laboratory Diagnosis, Faculty of Veterinary Medicine, Assiut University, Assiut, 71515, Egypt
| | - Yongjin Qiu
- Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, Sapporo, 001-0020, Japan
- Department of Virology-I, National Institute of Infectious Diseases, Shinjuku-ku, Tokyo, 162-8640, Japan
- Management Department of Biosafety, Laboratory Animal, and Pathogen Bank, National Institute of Infectious Diseases, Shinjuku-ku, Tokyo, 162-8640, Japan
| | - Keita Matsuno
- Division of Risk Analysis and Management, International Institute for Zoonosis Control, Hokkaido University, Sapporo, 001-0020, Japan
- One Health Research Center, Hokkaido University, Sapporo, 001-0020, Japan
- International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, Sapporo, 001-0020, Japan
| | - Nariaki Nonaka
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan
| | - Ryo Nakao
- Laboratory of Parasitology, Department of Disease Control, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, 060-0818, Japan.
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10
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Brown JJ, Jandová A, Jeffs CT, Higgie M, Nováková E, Lewis OT, Hrček J. Microbiome Structure of a Wild Drosophila Community along Tropical Elevational Gradients and Comparison to Laboratory Lines. Appl Environ Microbiol 2023; 89:e0009923. [PMID: 37154737 DOI: 10.1128/aem.00099-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/10/2023] Open
Abstract
Variation along environmental gradients in host-associated microbial communities is not well understood compared to free-living microbial communities. Because elevational gradients may serve as natural proxies for climate change, understanding patterns along these gradients can inform our understanding of the threats hosts and their symbiotic microbes face in a warming world. In this study, we analyzed bacterial microbiomes from pupae and adults of four Drosophila species native to Australian tropical rainforests. We sampled wild individuals at high and low elevations along two mountain gradients to determine natural diversity patterns. Further, we sampled laboratory-reared individuals from isofemale lines established from the same localities to see if any natural patterns are retained in the lab. In both environments, we controlled for diet to help elucidate other deterministic patterns of microbiome composition. We found small but significant differences in Drosophila bacterial community composition across elevation, with some notable taxonomic differences between different Drosophila species and sites. Further, we found that field-collected fly pupae had significantly richer microbiomes than laboratory-reared pupae. We also found similar microbiome composition in both types of provided diet, suggesting that the significant differences found among Drosophila microbiomes are the products of surrounding environments with different bacterial species pools, possibly bound to elevational differences in temperature. Our results suggest that comparative studies between lab and field specimens help reveal the true variability in microbiome communities that can exist within a single species. IMPORTANCE Bacteria form microbial communities inside most higher-level organisms, but we know little about how the microbiome varies along environmental gradients and between natural host populations and laboratory colonies. To explore such effects on insect-associated microbiomes, we studied the gut microbiome in four Drosophila species over two mountain gradients in tropical Australia. We also compared these data to individuals kept in the laboratory to understand how different settings changed microbiome communities. We found that field-sampled individuals had significantly higher microbiome diversity than those from the lab. In wild Drosophila populations, elevation explains a small but significant amount of the variation in their microbial communities. Our study highlights the importance of environmental bacterial sources for Drosophila microbiome composition across elevational gradients and shows how comparative studies help reveal the true flexibility in microbiome communities that can exist within a species.
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Affiliation(s)
- Joel J Brown
- University of South Bohemia, Faculty of Science, České Budějovice, Czech Republic
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Anna Jandová
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | | | - Megan Higgie
- College of Science & Engineering, James Cook University, Townsville, Queensland, Australia
| | - Eva Nováková
- University of South Bohemia, Faculty of Science, České Budějovice, Czech Republic
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Owen T Lewis
- Department of Zoology, University of Oxford, Oxford, United Kingdom
| | - Jan Hrček
- University of South Bohemia, Faculty of Science, České Budějovice, Czech Republic
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
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11
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Hu J, Vandenkoornhuyse P, Khalfallah F, Causse‐Védrines R, Mony C. Ecological corridors homogenize plant root endospheric mycobiota. THE NEW PHYTOLOGIST 2023; 237:1347-1362. [PMID: 36349407 PMCID: PMC10107361 DOI: 10.1111/nph.18606] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 11/01/2022] [Indexed: 06/16/2023]
Abstract
Ecological corridors promote species coexistence in fragmented habitats where dispersal limits species fluxes. The corridor concept was developed and investigated with macroorganisms in mind, while microorganisms, the invisible majority of biodiversity, were disregarded. We analyzed the effect of corridors on the dynamics of endospheric fungal assemblages associated with plant roots at the scale of 1 m over 2 years (i.e. at five time points) by combining an experimental corridor-mesocosm with high-throughput amplicon sequencing. We showed that plant root endospheric mycobiota were sensitive to corridor effects when the corridors were set up at a small spatial scale. The endospheric mycobiota of connected plants had higher species richness, lower beta-diversity, and more deterministic assembly than the mycobiota of isolated plants. These effects became more pronounced with the development of host plants. Biotic corridors composed of host plants may thus play a key role in the spatial dynamics of microbial communities and may influence microbial diversity and related ecological functions.
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Affiliation(s)
- Jie Hu
- UMR 6553 EcobioCNRS‐University of RennesAvenue du Général Leclerc35042Rennes CedexFrance
- Ecology and Biodiversity group, Institute of Environmental BiologyUniversity of UtrechtH.R. Kruyt building, Padualaan 83584 CHUtrechtthe Netherlands
- Present address:
Department of Microbial EcologyNetherlands Institute of EcologyDroevendaalsesteeg 106708 PBWageningenthe Netherlands
| | | | - Fadwa Khalfallah
- UMR 6553 EcobioCNRS‐University of RennesAvenue du Général Leclerc35042Rennes CedexFrance
- UMR IAM, INRAEUniversité de LorraineRue d'amance54280ChampenouxFrance
| | - Romain Causse‐Védrines
- UMR 6553 EcobioCNRS‐University of RennesAvenue du Général Leclerc35042Rennes CedexFrance
| | - Cendrine Mony
- UMR 6553 EcobioCNRS‐University of RennesAvenue du Général Leclerc35042Rennes CedexFrance
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12
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Zhao D, Ni X, Zhang Z, Niu H, Qiu R, Guo H. Bt protein hasten entomopathogenic fungi-induced death of nontarget pest whitefly by suppressing protective symbionts. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 853:158588. [PMID: 36087663 DOI: 10.1016/j.scitotenv.2022.158588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 08/29/2022] [Accepted: 09/03/2022] [Indexed: 06/15/2023]
Abstract
The risk assessment of Bacillus thuringiensis (Bt) crops on nontarget pests has received much attention. Despite the knowledge of various beneficial bacterial symbionts in pests, whether Bt proteins affect these symbionts and subsequently alter the pest's ecology remains largely unknown. The whitefly Bemisia tabaci is one of the most serious nontarget pests in Bt cotton. Here, we explored the Bt Cry1Ac protein-induced changes in whitefly symbiont abundance and the subsequent effects on whitefly response against a naturally prevalent entomopathogenic fungus Cordyceps javanica. The obligate symbiont 'Candidatus Portiera aleyrodidarum' (hereafter P. aleyrodidarum) as well as facultative symbionts 'Candidatus Hamiltonella defensa' (hereafter H. defensa), 'Candidatus Cardinium hertigii' (hereafter C. hertigii) and 'Candidatus Rickettsia bellii' (hereafter R. bellii) dominate the microbial community of whiteflies. The Bt exposure had no effects on H. defensa infected (H) and H. defensa-C. hertigii doubly infected (HC) whiteflies, but decreased the total copy number of symbionts as well as the R. bellii proportion in H. defensa-C. hertigii- R. bellii triply infected whiteflies (HCR). C. javanica caused whitefly adults 100 % mortality within 8 days. Without Bt protein exposure, HCR whiteflies survived significantly longer than H and HC whiteflies sprayed by C. javanica, suggesting that R. bellii confers protection. However, in Bt-exposed groups, C. javanica generated synchronous death of H, HC and HCR whiteflies. Specifically, in H and HC whiteflies, Bt protein-exposure showed no significant difference in progress of death caused by C. javanica. But in HCR whiteflies, Bt exposure hastened death induced by C. javanica, suppressing the R. bellii-conferred protection. This is the first report revealing that Bt protein altered symbiont community conferred adverse effects on nontarget pests, providing a new perspective for Bt risk assessment and biocontrol strategies of nontarget pests.
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Affiliation(s)
- Dongxiao Zhao
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Xiaolu Ni
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Zhichun Zhang
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Hongtao Niu
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Ruiting Qiu
- College of Arts and Sciences, The Ohio State University, Columbus 43201, United States of America
| | - Huifang Guo
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
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Ayayee PA, Wesner JS, Ouellette SP. Geography, taxonomy, and ecological guild: Factors impacting freshwater macroinvertebrate gut microbiomes. Ecol Evol 2022; 12:e9663. [PMID: 36582772 PMCID: PMC9789321 DOI: 10.1002/ece3.9663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 12/05/2022] [Accepted: 12/09/2022] [Indexed: 12/25/2022] Open
Abstract
Despite their diversity, global distribution, and apparent effects on host biology, the rules of life that govern variation in microbiomes among host species remain unclear, particularly in freshwater organisms. In this study, we sought to assess whether geographic location, taxonomy (order, family, and genus), or functional feeding group (FFG) designations would best explain differences in the gut microbiome composition among macroinvertebrates sampled across 10 National Ecological Observatory Network's (NEON) freshwater stream sites in the United States. Subsequently, we compared the beta diversity of microbiomes among locations, taxonomy (order, family, and genus), and FFGs in a single statistical model to account for variation within the source microbial community and the types of macroinvertebrates sampled across locations. We determined significant differences in community composition among macroinvertebrate orders, families, genera, and FFGs. Differences in microbiome compositions were underscored by different bacterial ASVs that were differentially abundant among variables (four bacterial ASVs across the 10 NEON sites, 43 ASVs among the macroinvertebrate orders, and 18 bacterial ASVs differing among the five FFGs). Analyses of variations in microbiome composition using the Bray-Curtis distance matric revealed FFGs as the dominant source of variation (mean standard deviation of 0.8), followed by stream site (mean standard deviation of 0.5), and finally family and genus (mean standard deviation of 0.3 each). Our findings revealed a principal role for FFG classification in insect gut microbiome beta diversity with additional roles for geographic distribution and taxonomy.
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Affiliation(s)
- Paul A. Ayayee
- Department of BiologyUniversity of Nebraska at OmahaOmahaNebraskaUSA
| | - Jeff S. Wesner
- Department of BiologyUniversity of South DakotaVermillionSouth DakotaUSA
| | - Scot P. Ouellette
- Department of Pathology and Microbiology, College of MedicineUniversity of Nebraska Medical CenterOmahaNebraskaUSA
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Bringhurst B, Allert M, Greenwold M, Kellner K, Seal JN. Environments and Hosts Structure the Bacterial Microbiomes of Fungus-Gardening Ants and their Symbiotic Fungus Gardens. MICROBIAL ECOLOGY 2022:10.1007/s00248-022-02138-x. [PMID: 36344828 DOI: 10.1007/s00248-022-02138-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
The fungus gardening-ant system is considered a complex, multi-tiered symbiosis, as it is composed of ants, their fungus, and microorganisms associated with either ants or fungus. We examine the bacterial microbiome of Trachymyrmex septentrionalis and Mycetomoellerius turrifex ants and their symbiotic fungus gardens, using 16S rRNA Illumina sequencing, over a region spanning approximately 350 km (east and central Texas). Typically, microorganisms can be acquired from a parent colony (vertical transmission) or from the environment (horizontal transmission). Because the symbiosis is characterized by co-dispersal of the ants and fungus, elements of both ant and fungus garden microbiome could be characterized by vertical transmission. The goals of this study were to explore how both the ant and fungus garden bacterial microbiome are acquired. The main findings were that different mechanisms appear to explain the structure the microbiomes of ants and their symbiotic fungus gardens. Ant associated microbiomes had a strong host ant signature, which could be indicative of vertical inheritance of the ant associated bacterial microbiome or an unknown mechanism of active uptake or screening. On the other hand, the bacterial microbiome of the fungus garden was more complex in that some bacterial taxa appear to be structured by the ant host species, whereas others by fungal lineage or the environment (geographic region). Thus bacteria in fungus gardens appear to be acquired both horizontally and vertically.
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Affiliation(s)
- Blake Bringhurst
- Department of Biology, University of Texas at Tyler, 3900 University Blvd, Tyler, TX, 75799, USA
| | - Mattea Allert
- Department of Biology, University of Texas at Tyler, 3900 University Blvd, Tyler, TX, 75799, USA
| | - Matthew Greenwold
- Department of Biology, University of Texas at Tyler, 3900 University Blvd, Tyler, TX, 75799, USA
| | - Katrin Kellner
- Department of Biology, University of Texas at Tyler, 3900 University Blvd, Tyler, TX, 75799, USA
| | - Jon N Seal
- Department of Biology, University of Texas at Tyler, 3900 University Blvd, Tyler, TX, 75799, USA.
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15
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Manus MB. Ecological Processes and Human Behavior Provide a Framework for Studying the Skin Microbial Metacommunity. MICROBIAL ECOLOGY 2022; 84:689-702. [PMID: 34636925 DOI: 10.1007/s00248-021-01884-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 09/24/2021] [Indexed: 06/13/2023]
Abstract
Metacommunity theory dictates that a microbial community is supported both by local ecological processes and the dispersal of microbes between neighboring communities. Studies that apply this perspective to human-associated microbial communities are thus far limited to the gut microbiome. Yet, the skin serves as the primary barrier between the body and the external environment, suggesting frequent opportunities for microbial dispersal to the variable microbial communities that are housed across skin sites. This paper applies metacommunity theory to understand the dispersal of microbes to the skin from the physical and social environment, as well as between different skin sites on an individual's body. This includes highlighting the role of human behavior in driving microbial dispersal, as well as shaping physiological properties of skin that underscore local microbial community dynamics. By leveraging data from research on the skin microbiomes of amphibians and other animals, this paper provides recommendations for future research on the skin microbial metacommunity, including generating testable predictions about the ecological underpinnings of the skin microbiome.
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Affiliation(s)
- Melissa B Manus
- Department of Anthropology, Northwestern University, Evanston, IL, USA.
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16
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Schwensow NI, Heni AC, Schmid J, Montero BK, Brändel SD, Halczok TK, Mayer G, Fackelmann G, Wilhelm K, Schmid DW, Sommer S. Disentangling direct from indirect effects of habitat disturbance on multiple components of biodiversity. J Anim Ecol 2022; 91:2220-2234. [DOI: 10.1111/1365-2656.13802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 08/09/2022] [Indexed: 11/29/2022]
Affiliation(s)
| | - Alexander Christoph Heni
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
- Smithsonian Tropical Research Institute Ancón Panama
| | - Julian Schmid
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
- Smithsonian Tropical Research Institute Ancón Panama
| | - B. Karina Montero
- Animal Ecology and Conservation Hamburg University Hamburg Germany
- Biodiversity Research Institute, Campus of Mieres, Universidad de Oviedo Mieres Spain
| | - Stefan Dominik Brändel
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
- Smithsonian Tropical Research Institute Ancón Panama
| | | | - Gerd Mayer
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
| | - Gloria Fackelmann
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
| | - Kerstin Wilhelm
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
| | - Dominik Werner Schmid
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
| | - Simone Sommer
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University Ulm Germany
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17
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Microhabitat Governs the Microbiota of the Pinewood Nematode and Its Vector Beetle: Implication for the Prevalence of Pine Wilt Disease. Microbiol Spectr 2022; 10:e0078322. [PMID: 35758726 PMCID: PMC9430308 DOI: 10.1128/spectrum.00783-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Our understanding of environmental acquisition of microbes and migration-related alteration of microbiota across habitats has rapidly increased. However, in complex life cycles, such as for many parasites, exactly how these microbes are transmitted across multiple environments, such as hosts and habitats, is unknown. Pinewood nematode, the causal agent of the globally devastating pine wilt disease, provides an ideal model to study the role of microbiota in multispecies interactions because its successful host invasion depends on the interactions among its vector insects, pine hosts, and associated microbes. Here, we studied the role of bacterial and fungal communities involved in the nematode’s life cycle across different micro- (pupal chamber, vector beetle, and dispersal nematodes) and macrohabitats (geographical locations). We identified the potential sources, selection processes, and keystone taxa involved in the host pine-nematode-vector beetle microbiota interactions. Nearly 50% of the microbiota in vector beetle tracheae and ~60% that of third-stage dispersal juveniles were derived from the host pine (pupal chambers), whereas 90% of bacteria of fourth-stage dispersal juveniles originated from vector beetle tracheae. Our results also suggest that vector beetles’ tracheae selectively acquire some key taxa from the microbial community of the pupal chambers. These taxa will be then enriched in the dispersal nematodes traveling in the tracheae and hence likely transported to new host trees. Taken together, our findings contribute to the critical information toward a better understanding of the role of microbiota in pine wilt disease, therefore aiding the knowledge for the development of future biological control agents. IMPORTANCE Our understanding of animal microbiota acquisition and dispersal-mediated variation has rapidly increased. In this study, using the model of host pine-pinewood nematode-vector beetle (Monochamus sp.) complex, we disentangled the routes of microbial community assembly and transmission mechanisms among these different participants responsible for highly destructive pine wilt disease. We provide evidence that the microhabitat is the driving force shaping the microbial community of these participants. The microbiota of third-stage dispersal juveniles (LIII) of the nematodes collected around pupal chambers and of vector beetles were mainly derived from the host pine (pupal chambers), whereas the vector-entering fourth-stage dispersal juveniles (LIV) of the nematodes had the simplest microbiota community, not influencing vector’s microbiota. These findings enhanced our understanding of the variation in the microbiota of plants and animals and shed light on microbiota acquisition in complex life cycles.
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18
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Salgueiro J, Nussenbaum AL, Milla FH, Asimakis E, Goane L, Ruiz MJ, Bachmann GE, Vera MT, Stathopoulou P, Bourtzis K, Deutscher AT, Lanzavecchia SB, Tsiamis G, Segura DF. Analysis of the Gut Bacterial Community of Wild Larvae of Anastrepha fraterculus sp. 1: Effect of Host Fruit, Environment, and Prominent Stable Associations of the Genera Wolbachia, Tatumella, and Enterobacter. Front Microbiol 2022; 13:822990. [PMID: 35359740 PMCID: PMC8960962 DOI: 10.3389/fmicb.2022.822990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 01/24/2022] [Indexed: 11/13/2022] Open
Abstract
The genus Anastrepha (Diptera Tephritidae) includes some of the most important fruit fly pests in the Americas. Here, we studied the gut bacterial community of 3rd instar larvae of Anastrepha fraterculus sp. 1 through Next Generation Sequencing (lllumina) of the V3-V4 hypervariable region within the 16S rRNA gene. Gut bacterial communities were compared between host species (guava and peach), and geographical origins (Concordia and Horco Molle in Argentina) representing distinct ecological scenarios. In addition, we explored the effect of spatial scale by comparing the samples collected from different trees within each geographic origin and host species. We also addressed the effect of fruit size on bacterial diversity. The gut bacterial community was affected both by host species and geographic origin. At smaller spatial scales, the gut bacterial profile differed among trees of the same species and location at least in one host-location combination. There was no effect of fruit size on the larval gut bacteriome. Operational Taxonomic Units (OTUs) assigned to Wolbachia, Tatumella and Enterobacter were identified in all samples examined, which suggest potential, non-transient symbioses. Better knowledge on the larval gut bacteriome contributes valuable information to develop sustainable control strategies against A. fraterculus targeting key symbionts as the Achilles' heel to control this important fruit fly pest.
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Affiliation(s)
- Julieta Salgueiro
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - A. Laura Nussenbaum
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - Fabián H. Milla
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
| | - Elias Asimakis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Lucía Goane
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán, San Miguel de Tucumán, Argentina
| | - M. Josefina Ruiz
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán, San Miguel de Tucumán, Argentina
| | - Guillermo E. Bachmann
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - María T. Vera
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán, San Miguel de Tucumán, Argentina
| | - Panagiota Stathopoulou
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Kostas Bourtzis
- Insect Pest Control Laboratory, Joint FAO/IAEA Center of Nuclear Techniques in Food and Agriculture, Vienna, Austria
| | - Ania T. Deutscher
- Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, Australia
| | - Silvia B. Lanzavecchia
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
| | - George Tsiamis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Diego F. Segura
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
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Rudolph K, Schneider D, Fichtel C, Daniel R, Heistermann M, Kappeler PM. Drivers of gut microbiome variation within and between groups of a wild Malagasy primate. MICROBIOME 2022; 10:28. [PMID: 35139921 PMCID: PMC8827170 DOI: 10.1186/s40168-021-01223-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 12/20/2021] [Indexed: 05/12/2023]
Abstract
BACKGROUND Various aspects of sociality can benefit individuals' health. The host social environment and its relative contributions to the host-microbiome relationship have emerged as key topics in microbial research. Yet, understanding the mechanisms that lead to structural variation in the social microbiome, the collective microbial metacommunity of an animal's social network, remains difficult since multiple processes operate simultaneously within and among animal social networks. Here, we examined the potential drivers of the convergence of the gut microbiome on multiple scales among and within seven neighbouring groups of wild Verreaux's sifakas (Propithecus verreauxi) - a folivorous primate of Madagascar. RESULTS Over four field seasons, we collected 519 faecal samples of 41 animals and determined gut communities via 16S and 18S rRNA gene amplicon analyses. First, we examined whether group members share more similar gut microbiota and if diet, home range overlap, or habitat similarity drive between-group variation in gut communities, accounting for seasonality. Next, we examined within-group variation in gut microbiota by examining the potential effects of social contact rates, male rank, and maternal relatedness. To explore the host intrinsic effects on the gut community structure, we investigated age, sex, faecal glucocorticoid metabolites, and female reproductive state. We found that group members share more similar gut microbiota and differ in alpha diversity, while none of the environmental predictors explained the patterns of between-group variation. Maternal relatedness played an important role in within-group microbial homogeneity and may also explain why adult group members shared the least similar gut microbiota. Also, dominant males differed in their bacterial composition from their group mates, which might be driven by rank-related differences in physiology and scent-marking behaviours. Links to sex, female reproductive state, or faecal glucocorticoid metabolites were not detected. CONCLUSIONS Environmental factors define the general set-up of population-specific gut microbiota, but intrinsic and social factors have a stronger impact on gut microbiome variation in this primate species. Video abstract.
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Affiliation(s)
- Katja Rudolph
- Behavioral Ecology & Sociobiology Unit, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, 37077, Göttingen, Germany.
- Department of Sociobiology/Anthropology, Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, Georg-August University Göttingen, Kellnerweg 6, 37077, Göttingen, Germany.
- Leibniz Science Campus "Primate Cognition", Göttingen, Germany.
| | - Dominik Schneider
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University Göttingen, Grisebachstraße 8, 37077, Göttingen, Germany
| | - Claudia Fichtel
- Behavioral Ecology & Sociobiology Unit, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, 37077, Göttingen, Germany
- Leibniz Science Campus "Primate Cognition", Göttingen, Germany
| | - Rolf Daniel
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University Göttingen, Grisebachstraße 8, 37077, Göttingen, Germany
| | - Michael Heistermann
- Endocrinology Laboratory, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, 37077, Göttingen, Germany
| | - Peter M Kappeler
- Behavioral Ecology & Sociobiology Unit, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, 37077, Göttingen, Germany
- Department of Sociobiology/Anthropology, Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, Georg-August University Göttingen, Kellnerweg 6, 37077, Göttingen, Germany
- Leibniz Science Campus "Primate Cognition", Göttingen, Germany
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20
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OUP accepted manuscript. FEMS Microbiol Ecol 2022; 98:6515943. [DOI: 10.1093/femsec/fiac005] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 01/17/2022] [Accepted: 01/24/2022] [Indexed: 11/13/2022] Open
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Rosenberg E, Zilber-Rosenberg I. Reconstitution and Transmission of Gut Microbiomes and Their Genes between Generations. Microorganisms 2021; 10:microorganisms10010070. [PMID: 35056519 PMCID: PMC8780831 DOI: 10.3390/microorganisms10010070] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 12/26/2021] [Accepted: 12/28/2021] [Indexed: 12/13/2022] Open
Abstract
Microbiomes are transmitted between generations by a variety of different vertical and/or horizontal modes, including vegetative reproduction (vertical), via female germ cells (vertical), coprophagy and regurgitation (vertical and horizontal), physical contact starting at birth (vertical and horizontal), breast-feeding (vertical), and via the environment (horizontal). Analyses of vertical transmission can result in false negatives (failure to detect rare microbes) and false positives (strain variants). In humans, offspring receive most of their initial gut microbiota vertically from mothers during birth, via breast-feeding and close contact. Horizontal transmission is common in marine organisms and involves selectivity in determining which environmental microbes can colonize the organism's microbiome. The following arguments are put forth concerning accurate microbial transmission: First, the transmission may be of functions, not necessarily of species; second, horizontal transmission may be as accurate as vertical transmission; third, detection techniques may fail to detect rare microbes; lastly, microbiomes develop and reach maturity with their hosts. In spite of the great variation in means of transmission discussed in this paper, microbiomes and their functions are transferred from one generation of holobionts to the next with fidelity. This provides a strong basis for each holobiont to be considered a unique biological entity and a level of selection in evolution, largely maintaining the uniqueness of the entity and conserving the species from one generation to the next.
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22
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Buttimer S, Hernández-Gómez O, Rosenblum EB. Skin bacterial metacommunities of San Francisco Bay Area salamanders are structured by host genus and habitat quality. FEMS Microbiol Ecol 2021; 97:6464136. [PMID: 34918086 DOI: 10.1093/femsec/fiab162] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 12/14/2021] [Indexed: 11/13/2022] Open
Abstract
Host-associated microbial communities can influence physiological processes of macroorganisms, including contributing to infectious disease resistance. For instance, some bacteria that live on amphibian skin produce antifungal compounds that inhibit two lethal fungal pathogens, Batrachochytrium dendrobatidis (Bd) and B. salamandrivorans (Bsal). Therefore, differences in microbiome composition among host species or populations within a species can contribute to variation in susceptibility to Bd/Bsal. This study applies 16S rRNA sequencing to characterize the skin bacterial microbiomes of three widespread terrestrial salamander genera native to the western United States. Using a metacommunity structure analysis, we identified dispersal barriers for these influential bacteria between salamander families and localities. We also analyzed the effects of habitat characteristics such as percent natural cover and temperature seasonality on the microbiome. We found that certain environmental variables may influence the skin microbial communities of some salamander genera more strongly than others. Each salamander family had a somewhat distinct community of putative anti-Bd skin bacteria, suggesting that salamanders may select for a functional assembly of cutaneous symbionts that could differ in its ability to protect these amphibians from disease. Our observations raise the need to consider host identity and environmental heterogeneity during the selection of probiotics to treat wildlife diseases.
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Affiliation(s)
- Shannon Buttimer
- Department of Environmental Science, Policy, and Management - The University of California, Berkeley, Berkeley, CA, U.S.A.,Department of Biological Sciences - The University of Alabama, Tuscaloosa, AL, U.S.A
| | - Obed Hernández-Gómez
- Department of Environmental Science, Policy, and Management - The University of California, Berkeley, Berkeley, CA, U.S.A.,School of Health and Natural Sciences - Dominican University of California, San Rafael, CA, U.S.A
| | - Erica Bree Rosenblum
- Department of Environmental Science, Policy, and Management - The University of California, Berkeley, Berkeley, CA, U.S.A
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23
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Gupta M, Kaur R, Gupta A, Raychoudhury R. Are ecological communities the seat of endosymbiont horizontal transfer and diversification? A case study with soil arthropod community. Ecol Evol 2021; 11:14490-14508. [PMID: 34765121 PMCID: PMC8571607 DOI: 10.1002/ece3.8108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 07/22/2021] [Accepted: 08/24/2021] [Indexed: 01/08/2023] Open
Abstract
Maternally inherited endosymbionts of arthropods are one of the most abundant and diverse group of bacteria. These bacterial endosymbionts also show extensive horizontal transfer to taxonomically unrelated hosts and widespread recombination in their genomes. Such horizontal transfers can be enhanced when different arthropod hosts come in contact like in an ecological community. Higher rates of horizontal transfer can also increase the probability of recombination between endosymbionts, as they now share the same host cytoplasm. However, reports of community-wide endosymbiont data are rare as most studies choose few host taxa and specific ecological interactions among the hosts. To better understand endosymbiont spread within host populations, we investigated the incidence, diversity, extent of horizontal transfer, and recombination of three endosymbionts (Wolbachia, Cardinium, and Arsenophonus) in a specific soil arthropod community. Wolbachia strains were characterized with MLST genes whereas 16S rRNA gene was used for Cardinium and Arsenophonus. Among 3,509 individual host arthropods, belonging to 390 morphospecies, 12.05% were infected with Wolbachia, 2.82% with Cardinium and 2.05% with Arsenophonus. Phylogenetic incongruence between host and endosymbiont indicated extensive horizontal transfer of endosymbionts within this community. Three cases of recombination between Wolbachia supergroups and eight incidences of within-supergroup recombination were also found. Statistical tests of similarity indicated supergroup A Wolbachia and Cardinium show a pattern consistent with extensive horizontal transfer within the community but not for supergroup B Wolbachia and Arsenophonus. We highlight the importance of extensive community-wide studies for a better understanding of the spread of endosymbionts across global arthropod communities.
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Affiliation(s)
- Manisha Gupta
- Indian Institute of Science Education and ResearchMohali (IISER‐Mohali)ManauliIndia
| | - Rajbir Kaur
- Indian Institute of Science Education and ResearchMohali (IISER‐Mohali)ManauliIndia
- Indian Institute of ScienceBengaluruIndia
| | - Ankita Gupta
- ICAR‐ National Bureau of Agricultural Insect Resources (NBAIR)BengaluruIndia
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24
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The presence of Pseudogymnoascus destructans, a fungal pathogen of bats, correlates with changes in microbial metacommunity structure. Sci Rep 2021; 11:11685. [PMID: 34083632 PMCID: PMC8175404 DOI: 10.1038/s41598-021-91118-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 05/18/2021] [Indexed: 02/04/2023] Open
Abstract
Metacommunity theory provides a framework for how community patterns arise from processes across scales, which is relevant for understanding patterns in host-associated microbial assemblages. Microbial metacommunities may have important roles in host health through interactions with pathogens; however, it is unclear how pathogens affect host microbial metacommunities. Here, we studied relationships between a fungal pathogen and a host-associated microbial metacommunity. We hypothesized that a fungal pathogen of bats, Pseudogymnoascus destructans, correlates with a shift in metacommunity structure and changes in relationships between community composition, and factors shaping these assemblages, such as ecoregion. We sampled bat cutaneous microbial assemblages in the presence/absence of P. destructans and analyzed microbial metacommunity composition and relationships with structuring variables. Absence of P. destructans correlated with a metacommunity characterized by a common core microbial group that was lacking in disease positive bats. Additionally, P. destructans presence correlated with a change in the relationship between community structure and ecoregion. Our results suggest that the fungal pathogen intensifies local processes influencing a microbial metacommunity and highlights the importance of cutaneous microbial assemblages in host-pathogen interactions.
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25
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Spiroplasma Infection among Ixodid Ticks Exhibits Species Dependence and Suggests a Vertical Pattern of Transmission. Microorganisms 2021; 9:microorganisms9020333. [PMID: 33567677 PMCID: PMC7915285 DOI: 10.3390/microorganisms9020333] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 01/26/2021] [Accepted: 02/05/2021] [Indexed: 11/24/2022] Open
Abstract
Members of the genus Spiroplasma are Gram-positive bacteria without cell walls. Some Spiroplasma species can cause disease in arthropods such as bees, whereas others provide their host with resistance to pathogens. Ticks also harbour Spiroplasma, but their role has not been elucidated yet. Here, the infection status and genetic diversity of Spiroplasma in ticks were investigated using samples collected from different geographic regions in Japan. A total of 712 ticks were tested for Spiroplasma infection by PCR targeting 16S rDNA, and Spiroplasma species were genetically characterized based on 16S rDNA, ITS, dnaA, and rpoB gene sequences. A total of 109 samples originating from eight tick species were positive for Spiroplasma infection, with infection rates ranging from 0% to 84% depending on the species. A linear mixed model indicated that tick species was the primary factor associated with Spiroplasma infection. Moreover, certain Spiroplasma alleles that are highly adapted to specific tick species may explain the high infection rates in Ixodes ovatus and Haemaphysalis kitaokai. A comparison of the alleles obtained suggests that horizontal transmission between tick species may not be a frequent event. These findings provide clues to understand the transmission cycle of Spiroplasma species in wild tick populations and their roles in host ticks.
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26
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Lajoie G, Kembel SW. Host neighborhood shapes bacterial community assembly and specialization on tree species across a latitudinal gradient. ECOL MONOGR 2021. [DOI: 10.1002/ecm.1443] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Geneviève Lajoie
- Département des sciences biologiques Université du Québec à Montréal 141, Avenue du Président‐Kennedy Montréal QuébecH2X 1Y4Canada
| | - Steven W. Kembel
- Département des sciences biologiques Université du Québec à Montréal 141, Avenue du Président‐Kennedy Montréal QuébecH2X 1Y4Canada
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27
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Guilhot R, Fellous S, Cohen JE. Yeast facilitates the multiplication of Drosophila bacterial symbionts but has no effect on the form or parameters of Taylor's law. PLoS One 2020; 15:e0242692. [PMID: 33227009 PMCID: PMC7682849 DOI: 10.1371/journal.pone.0242692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 11/08/2020] [Indexed: 11/19/2022] Open
Abstract
Interactions between microbial symbionts influence their demography and that of their hosts. Taylor’s power law (TL)–a well-established relationship between population size mean and variance across space and time–may help to unveil the factors and processes that determine symbiont multiplications. Recent studies suggest pervasive interactions between symbionts in Drosophila melanogaster. We used this system to investigate theoretical predictions regarding the effects of interspecific interactions on TL parameters. We assayed twenty natural strains of bacteria in the presence and absence of a strain of yeast using an ecologically realistic set-up with D. melanogaster larvae reared in natural fruit. Yeast presence led to a small increase in bacterial cell numbers; bacterial strain identity largely affected yeast multiplication. The spatial version of TL held among bacterial and yeast populations with slopes of 2. However, contrary to theoretical prediction, the facilitation of bacterial symbionts by yeast had no detectable effect on TL’s parameters. These results shed new light on the nature of D. melanogaster’s symbiosis with yeast and bacteria. They further reveal the complexity of investigating TL with microorganisms.
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Affiliation(s)
- Robin Guilhot
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, Univ Montpellier, Montpellier, France
| | - Simon Fellous
- CBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, Univ Montpellier, Montpellier, France
| | - Joel E Cohen
- Laboratory of Populations, Rockefeller University, New York, New York, United States of America
- Earth Institute and Department of Statistics, Columbia University, New York, New York, United States of America
- Department of Statistics, University of Chicago, Chicago, Illinois, United States of America
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28
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Salgueiro J, Pimper LE, Segura DF, Milla FH, Russo RM, Asimakis E, Stathopoulou P, Bourtzis K, Cladera JL, Tsiamis G, Lanzavecchia SB. Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization. Front Microbiol 2020; 11:570960. [PMID: 33193166 PMCID: PMC7606190 DOI: 10.3389/fmicb.2020.570960] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Accepted: 09/25/2020] [Indexed: 11/13/2022] Open
Abstract
Microbial communities associated to insect species are involved in essential biological functions such as host nutrition, reproduction and survivability. Main factors have been described as modulators of gut bacterial community, such as diet, habit, developmental stage and taxonomy of the host. The present work focuses on the complex changes that gut microbial communities go through when wild insects are introduced to artificial rearing conditions. Specifically, we analyzed the effect of the laboratory colonization on the richness and diversity of the gut bacteriome hosted by the fruit fly pest Anastrepha fraterculus sp. 1. Bacterial profiles were studied by amplicon sequencing of the 16S rRNA V3-V4 hypervariable region in gut samples of males and females, in teneral (1-day-old, unfed) and post-teneral (15-day-old, fed) flies. A total of 3,147,665 sequence reads were obtained and 32 bacterial operational taxonomic units (OTUs) were identified. Proteobacteria was the most abundant phylum (93.3% of the total reads) and, Wolbachia and Enterobacter were the most represented taxa at the genus level (29.9% and 27.7%, respectively, of the total read counts). Wild and laboratory flies showed highly significant differences in the relative abundances of bacteria. The analysis of the core bacteriome showed the presence of five OTUs in all samples grouped by origin, while nine and five OTUs were exclusively detected in laboratory and wild flies, respectively. Irrespective of fly origin or sex, a dominant presence of Wolbachia was observed in teneral flies, whereas Enterobacter was highly abundant in post-teneral individuals. We evidenced significant differences in bacterial richness and diversity among generations under laboratory colonization (F0, F1, F3 and F6) and compared to laboratory and wild flies, displaying also differential patterns between teneral and post-teneral flies. Laboratory and wild A. fraterculus sp. 1 harbor different gut bacterial communities. Laboratory colonization has an important effect on the microbiota, most likely associated to the combined effects of insect physiology and environmental conditions (e.g., diet and colony management).
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Affiliation(s)
- Julieta Salgueiro
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina.,Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
| | - Lida E Pimper
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina
| | - Diego F Segura
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina.,Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
| | - Fabián H Milla
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina
| | - Romina M Russo
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina
| | - Elias Asimakis
- Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | | | - Kostas Bourtzis
- Insect Pest Control Laboratory, Joint FAO/IAEA Programme of Nuclear Techniques in Food and Agriculture, Vienna, Austria
| | - Jorge L Cladera
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina
| | - George Tsiamis
- Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Silvia B Lanzavecchia
- Laboratorio de Insectos de Importancia Agronómica, Instituto de Genética "E.A. Favret", Centro de Investigación en Ciencias Veterinarias y Agronómicas - Instituto Nacional de Tecnología Agropecuaria, Instituto de Agrobiotecnología y Biología Molecular - Consejo Nacional de Investigaciones Científicas y Tecnológicas, Buenos Aires, Argentina
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29
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Brown JJ, Rodríguez-Ruano SM, Poosakkannu A, Batani G, Schmidt JO, Roachell W, Zima J, Hypša V, Nováková E. Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae). MICROBIOME 2020; 8:146. [PMID: 33040738 PMCID: PMC7549230 DOI: 10.1186/s40168-020-00921-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 09/09/2020] [Indexed: 05/04/2023]
Abstract
BACKGROUND Kissing bugs (Triatominae) are blood-feeding insects best known as the vectors of Trypanosoma cruzi, the causative agent of Chagas' disease. Considering the high epidemiological relevance of these vectors, their biology and bacterial symbiosis remains surprisingly understudied. While previous investigations revealed generally low individual complexity but high among-individual variability of the triatomine microbiomes, any consistent microbiome determinants have not yet been identified across multiple Triatominae species. METHODS To obtain a more comprehensive view of triatomine microbiomes, we investigated the host-microbiome relationship of five Triatoma species sampled from white-throated woodrat (Neotoma albigula) nests in multiple locations across the USA. We applied optimised 16S rRNA gene metabarcoding with a novel 18S rRNA gene blocking primer to a set of 170 T. cruzi-negative individuals across all six instars. RESULTS Triatomine gut microbiome composition is strongly influenced by three principal factors: ontogeny, species identity, and the environment. The microbiomes are characterised by significant loss in bacterial diversity throughout ontogenetic development. First instars possess the highest bacterial diversity while adult microbiomes are routinely dominated by a single taxon. Primarily, the bacterial genus Dietzia dominates late-stage nymphs and adults of T. rubida, T. protracta, and T. lecticularia but is not present in the phylogenetically more distant T. gerstaeckeri and T. sanguisuga. Species-specific microbiome composition, particularly pronounced in early instars, is further modulated by locality-specific effects. In addition, pathogenic bacteria of the genus Bartonella, acquired from the vertebrate hosts, are an abundant component of Triatoma microbiomes. CONCLUSION Our study is the first to demonstrate deterministic patterns in microbiome composition among all life stages and multiple Triatoma species. We hypothesise that triatomine microbiome assemblages are produced by species- and life stage-dependent uptake of environmental bacteria and multiple indirect transmission strategies that promote bacterial transfer between individuals. Altogether, our study highlights the complexity of Triatominae symbiosis with bacteria and warrant further investigation to understand microbiome function in these important vectors. Video abstract.
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Affiliation(s)
- Joel J. Brown
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
| | | | - Anbu Poosakkannu
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Giampiero Batani
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | | | - Walter Roachell
- US Army Public Health Command-Central, JBSA Fort Sam, Houston, TX USA
| | - Jan Zima
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Václav Hypša
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Eva Nováková
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
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