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Stephens SH, Hartz SM, Hoft NR, Saccone NL, Corley RC, Hewitt JK, Hopfer CJ, Breslau N, Coon H, Chen X, Ducci F, Dueker N, Franceschini N, Frank J, Han Y, Hansel NN, Jiang C, Korhonen T, Lind PA, Liu J, Lyytikäinen LP, Michel M, Shaffer JR, Short SE, Sun J, Teumer A, Thompson JR, Vogelzangs N, Vink JM, Wenzlaff A, Wheeler W, Yang BZ, Aggen SH, Balmforth AJ, Baumeister SE, Beaty TH, Benjamin DJ, Bergen AW, Broms U, Cesarini D, Chatterjee N, Chen J, Cheng YC, Cichon S, Couper D, Cucca F, Dick D, Foroud T, Furberg H, Giegling I, Gillespie NA, Gu F, Hall AS, Hällfors J, Han S, Hartmann AM, Heikkilä K, Hickie IB, Hottenga JJ, Jousilahti P, Kaakinen M, Kähönen M, Koellinger PD, Kittner S, Konte B, Landi MT, Laatikainen T, Leppert M, Levy SM, Mathias RA, McNeil DW, Medland SE, Montgomery GW, Murray T, Nauck M, North KE, Paré PD, Pergadia M, Ruczinski I, Salomaa V, Viikari J, Willemsen G, Barnes KC, Boerwinkle E, Boomsma DI, Caporaso N, Edenberg HJ, Francks C, Gelernter J, Grabe HJ, Hops H, Jarvelin MR, Johannesson M, Kendler KS, Lehtimäki T, Magnusson PK, Marazita ML, Marchini J, Mitchell BD, Nöthen MM, et alStephens SH, Hartz SM, Hoft NR, Saccone NL, Corley RC, Hewitt JK, Hopfer CJ, Breslau N, Coon H, Chen X, Ducci F, Dueker N, Franceschini N, Frank J, Han Y, Hansel NN, Jiang C, Korhonen T, Lind PA, Liu J, Lyytikäinen LP, Michel M, Shaffer JR, Short SE, Sun J, Teumer A, Thompson JR, Vogelzangs N, Vink JM, Wenzlaff A, Wheeler W, Yang BZ, Aggen SH, Balmforth AJ, Baumeister SE, Beaty TH, Benjamin DJ, Bergen AW, Broms U, Cesarini D, Chatterjee N, Chen J, Cheng YC, Cichon S, Couper D, Cucca F, Dick D, Foroud T, Furberg H, Giegling I, Gillespie NA, Gu F, Hall AS, Hällfors J, Han S, Hartmann AM, Heikkilä K, Hickie IB, Hottenga JJ, Jousilahti P, Kaakinen M, Kähönen M, Koellinger PD, Kittner S, Konte B, Landi MT, Laatikainen T, Leppert M, Levy SM, Mathias RA, McNeil DW, Medland SE, Montgomery GW, Murray T, Nauck M, North KE, Paré PD, Pergadia M, Ruczinski I, Salomaa V, Viikari J, Willemsen G, Barnes KC, Boerwinkle E, Boomsma DI, Caporaso N, Edenberg HJ, Francks C, Gelernter J, Grabe HJ, Hops H, Jarvelin MR, Johannesson M, Kendler KS, Lehtimäki T, Magnusson PK, Marazita ML, Marchini J, Mitchell BD, Nöthen MM, Penninx BW, Raitakari O, Rietschel M, Rujescu D, Samani NJ, Schwartz AG, Shete S, Spitz M, Swan GE, Völzke H, Veijola J, Wei Q, Amos C, Cannon DS, Grucza R, Hatsukami D, Heath A, Johnson EO, Kaprio J, Madden P, Martin NG, Stevens VL, Weiss RB, Kraft P, Bierut LJ, Ehringer MA. Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking. Genet Epidemiol 2013; 37:846-59. [PMID: 24186853 PMCID: PMC3947535 DOI: 10.1002/gepi.21760] [Show More Authors] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Revised: 06/21/2013] [Accepted: 08/14/2013] [Indexed: 12/21/2022]
Abstract
Neuronal nicotinic acetylcholine receptor (nAChR) genes (CHRNA5/CHRNA3/CHRNB4) have been reproducibly associated with nicotine dependence, smoking behaviors, and lung cancer risk. Of the few reports that have focused on early smoking behaviors, association results have been mixed. This meta-analysis examines early smoking phenotypes and SNPs in the gene cluster to determine: (1) whether the most robust association signal in this region (rs16969968) for other smoking behaviors is also associated with early behaviors, and/or (2) if additional statistically independent signals are important in early smoking. We focused on two phenotypes: age of tobacco initiation (AOI) and age of first regular tobacco use (AOS). This study included 56,034 subjects (41 groups) spanning nine countries and evaluated five SNPs including rs1948, rs16969968, rs578776, rs588765, and rs684513. Each dataset was analyzed using a centrally generated script. Meta-analyses were conducted from summary statistics. AOS yielded significant associations with SNPs rs578776 (beta = 0.02, P = 0.004), rs1948 (beta = 0.023, P = 0.018), and rs684513 (beta = 0.032, P = 0.017), indicating protective effects. There were no significant associations for the AOI phenotype. Importantly, rs16969968, the most replicated signal in this region for nicotine dependence, cigarettes per day, and cotinine levels, was not associated with AOI (P = 0.59) or AOS (P = 0.92). These results provide important insight into the complexity of smoking behavior phenotypes, and suggest that association signals in the CHRNA5/A3/B4 gene cluster affecting early smoking behaviors may be different from those affecting the mature nicotine dependence phenotype.
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Affiliation(s)
- Sarah H. Stephens
- Department of Epidemiology and Public Health, University of Maryland, Baltimore, Maryland, United States of America
| | - Sarah M. Hartz
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Nicole R. Hoft
- Institute for Behavioral Genetics, University of Colorado, Boulder, Colorado, United States of America
| | - Nancy L. Saccone
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Robin C. Corley
- Institute for Behavioral Genetics, University of Colorado, Boulder, Colorado, United States of America
| | - John K. Hewitt
- Institute for Behavioral Genetics, University of Colorado, Boulder, Colorado, United States of America
| | - Christian J. Hopfer
- Institute for Behavioral Genetics, University of Colorado, Boulder, Colorado, United States of America
| | - Naomi Breslau
- Department of Epidemiology, Michigan State University, East Lansing, Michigan, United States of America
| | - Hilary Coon
- Department of Psychiatry, University of Utah School of Medicine, Salt Lake City, Utah, United States of America
| | - Xiangning Chen
- Department of Psychiatry, Virginia Commonwealth University, Richmond, Virginia, United States of America
| | - Francesca Ducci
- Institute of Psychiatry, King’s College London and Department of Mental Health, St George’s University, London, United Kingdom
- Department of Psychiatry, Neurobiology, Pharmacology, and Biotechnology, University of Pisa, Pisa, Italy
| | - Nicole Dueker
- Department of Epidemiology and Public Health, University of Maryland, Baltimore, Maryland, United States of America
| | - Nora Franceschini
- Department of Epidemiology, University of North Carolina, Chapel Hill, North Carolina, United States of America
| | - Josef Frank
- Department of Genetic Epidemiology in Psychiatry, Central Institute of Mental Health, Clinical Faculty Mannheim / Heidelberg University, Mannheim, Germany
| | - Younghun Han
- Department of Epidemiology, MD Anderson, Houston, Texas, United States of America
| | - Nadia N. Hansel
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Chenhui Jiang
- Departments of Psychiatry, Yale University School of Medicine, New Haven, Connecticut, United States of America
| | - Tellervo Korhonen
- Department of Public Health, Hjelt Institute, University of Helsinki, Helsinki, Finland
| | - Penelope A. Lind
- Department of Epidemiology, Queensland Institute of Medical Research, Brisbane, Queensland, Australia
| | - Jason Liu
- Department of Statistics, University of Oxford, Oxford, United Kingdom
| | - Leo-Pekka Lyytikäinen
- Department of Clinical Chemistry, Fimlab Laboratories, Tampere University Hospital and University of Tampere School of Medicine, Tampere, Finland
| | - Martha Michel
- Center for Health Sciences, SRI International, Menlo Park, California, United States of America
| | - John R. Shaffer
- Department of Human Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
| | - Susan E. Short
- Department of Sociology, Brown University, Providence, Rhode Island, United States of America
| | - Juzhong Sun
- Department of Epidemiology Research, American Cancer Society, Atlanta, Georgia, United States of America
| | - Alexander Teumer
- University Medicine Greifswald, University of Greifswald, Greifswald, Germany
| | - John R. Thompson
- Department of Health Sciences, University of Leicester, Leicester, United Kingdom
| | - Nicole Vogelzangs
- Department of Psychiatry, VU University Medical Center, Amsterdam, The Netherlands
| | - Jacqueline M. Vink
- Department of Biological Psychology, VU University, Amsterdam, Amsterdam, The Netherlands
| | - Angela Wenzlaff
- Karmanos Cancer Institute, Wayne State University, Detroit, Michigan, United States of America
| | - William Wheeler
- Division of Cancer Epidemiology and Genetics, National Institute of Health, Bethesda, Maryland, United States of America
| | - Bao-Zhu Yang
- Departments of Psychiatry, Yale University School of Medicine, New Haven, Connecticut, United States of America
| | - Steven H. Aggen
- Department of Psychiatry, Virginia Commonwealth University, Richmond, Virginia, United States of America
| | - Anthony J. Balmforth
- LIGHT Research Institute, Faculty of Medicine and Health, University of Leeds, Leeds, United Kingdom
| | | | - Terri H. Beaty
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Daniel J. Benjamin
- Department of Economics, Cornell University, Ithaca, New York, United States of America
| | - Andrew W. Bergen
- Center for Health Sciences, SRI International, Menlo Park, California, United States of America
| | - Ulla Broms
- Department of Public Health, Hjelt Institute, University of Helsinki, Helsinki, Finland
| | - David Cesarini
- Department of Economics, New York University, New York, New York, United States of America
| | - Nilanjan Chatterjee
- Division of Cancer Epidemiology and Genetics, National Institutes of Health, Bethesda, Maryland, United States of America
| | - Jingchun Chen
- Department of Psychiatry, Virginia Commonwealth University, Richmond, Virginia, United States of America
| | - Yu-Ching Cheng
- Department of Epidemiology and Public Health, University of Maryland, Baltimore, Maryland, United States of America
| | - Sven Cichon
- Institute of Neuroscience and Medicine (INM-1); Structural and Functional Organization of the Brain Genomic Imaging; Department of Genomics, Life and Brain Center; Research Center Juelich, Juelich, Germany; Life and Brain Center and Institute of Human Genetics, University of Bonn, Bonn, Germany
| | - David Couper
- Department of Psychiatry, Neurobiology, Pharmacology, and Biotechnology, University of Pisa, Pisa, Italy
| | - Francesco Cucca
- Istituto di Ricerca Genetica e Biomedica, CNR, Cittadella Universitaria di Monserrato, Monserrato, Cagliari, Italy
| | - Danielle Dick
- Department of Psychiatry, Virginia Commonwealth University, Richmond, Virginia, United States of America
| | - Tatiana Foroud
- Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, United States of America
| | - Helena Furberg
- Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America
| | - Ina Giegling
- Department of Psychiatry, University of Munich (LMU), Munich, Germany
| | - Nathan A. Gillespie
- Department of Psychiatry, Virginia Commonwealth University, Richmond, Virginia, United States of America
| | - Fangyi Gu
- Division of Cancer Epidemiology and Genetics, National Institutes of Health, Bethesda, Maryland, United States of America
| | - Alistair S. Hall
- LIGHT Research Institute, Faculty of Medicine and Health, University of Leeds, Leeds, United Kingdom
| | - Jenni Hällfors
- Department of Public Health, Hjelt Institute, University of Helsinki, Helsinki, Finland
| | - Shizhong Han
- Departments of Psychiatry, Yale University School of Medicine, New Haven, Connecticut, United States of America
| | | | - Kauko Heikkilä
- Department of Public Health, Hjelt Institute, University of Helsinki, Helsinki, Finland
| | - Ian B. Hickie
- Brain and Mind Research Institute, University of Sydney, Sydney, Australia
| | - Jouke Jan Hottenga
- Department of Biological Psychology, VU University, Amsterdam, Amsterdam, The Netherlands
| | - Pekka Jousilahti
- Department of Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki, Finland
| | - Marika Kaakinen
- Institute of Health Sciences and Biocenter Oulu, University of Oulu, Finland
| | - Mika Kähönen
- Department of Clinical Physiology, Tampere University Hospital and University of Tampere School of Medicine, Tampere, Finland
| | - Philipp D. Koellinger
- Department of Applied Economics, Erasmus Universiteit Rotterdam, Rotterdam, Netherlands
| | - Stephen Kittner
- Department of Neurology, Baltimore Veterans Affairs Medical Center, University of Maryland School of Medicine, Baltimore, Maryland, United States of America
| | - Bettina Konte
- Department of Psychiatry, University of Munich (LMU), Munich, Germany
| | - Maria-Teresa Landi
- Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, United States of America
| | - Tiina Laatikainen
- Department of Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki, Finland
| | - Mark Leppert
- Department of Psychiatry, University of Utah School of Medicine, Salt Lake City, Utah, United States of America
| | - Steven M. Levy
- Department of Preventive and Community Dentistry and Department of Epidemiology, University of Iowa, Iowa City, Iowa, United States of America
| | - Rasika A. Mathias
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Daniel W. McNeil
- Department of Psychology and Dental Practice and Rural Health, West Virginia University, Morgantown, West Virginia, United States of America
| | - Sarah E. Medland
- Department of Epidemiology, Queensland Institute of Medical Research, Brisbane, Queensland, Australia
| | - Grant W. Montgomery
- Department of Epidemiology, Queensland Institute of Medical Research, Brisbane, Queensland, Australia
| | - Tanda Murray
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Matthias Nauck
- University Medicine Greifswald, University of Greifswald, Greifswald, Germany
| | - Kari E. North
- Department of Epidemiology, University of North Carolina, Chapel Hill, North Carolina, United States of America
| | - Peter D. Paré
- Department of Medicine, University of British Columbia, Vancouver, Canada
| | - Michele Pergadia
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Ingo Ruczinski
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Veikko Salomaa
- Department of Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki, Finland
| | - Jorma Viikari
- Department of Medicine, Turku University Hospital, Turku, Finland
| | - Gonneke Willemsen
- Department of Biological Psychology, VU University, Amsterdam, Amsterdam, The Netherlands
| | - Kathleen C. Barnes
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Eric Boerwinkle
- Human Genetics Center, The University of Texas Health Science Center at Houston, Houston, Texas, United States of America
| | - Dorret I. Boomsma
- Department of Biological Psychology, VU University, Amsterdam, Amsterdam, The Netherlands
| | - Neil Caporaso
- Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, United States of America
| | - Howard J. Edenberg
- Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, United States of America
| | - Clyde Francks
- Department of the MPI Psycholinguistics, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands
| | - Joel Gelernter
- Departments of Psychiatry, Yale University School of Medicine, New Haven, Connecticut, United States of America
| | - Hans Jörgen Grabe
- University Medicine Greifswald, University of Greifswald, Greifswald, Germany
| | - Hyman Hops
- Oregon Research Institute, Eugene, Oregon, United States of America
| | - Marjo-Riitta Jarvelin
- Department of Epidemiology and Biostatistics, MRC Health Protection Agency (HPA) Centre for Environment and Health School of Public Health, Imperial College London, United Kingdom; Institute of Health Sciences and Biocenter Oulu, University of Oulu, Finland; Unit of Primary Care, Oulu University Hospital, Oulu, Finland; Department of Children and Young People and Families, National Institute for Health and Welfare, Oulu, Finland
| | - Magnus Johannesson
- Department of Economics, Stockholm School of Economics, Stockholm, Sweden
| | - Kenneth S. Kendler
- Department of Psychiatry, Virginia Commonwealth University, Richmond, Virginia, United States of America
| | - Terho Lehtimäki
- Department of Clinical Chemistry, Fimlab Laboratories, Tampere University Hospital and University of Tampere School of Medicine, Tampere, Finland
| | - Patrik K.E. Magnusson
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Mary L. Marazita
- Department of Human Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
| | - Jonathan Marchini
- Department of Statistics, University of Oxford, Oxford, United Kingdom
| | - Braxton D. Mitchell
- Department of Epidemiology and Public Health, University of Maryland, Baltimore, Maryland, United States of America
| | - Markus M. Nöthen
- Department of Genomics, Life and Brain Center, Life and Brain Center, Institute of Human Genetics, University of Bonn, Bonn, Germany
| | - Brenda W. Penninx
- Department of Psychiatry, VU University Medical Center, Amsterdam, The Netherlands
| | - Olli Raitakari
- Department of Clinical Physiology and Nuclear Medicine, Turku University Hospital; Research Centre of Applied and Preventive Cardiovascular Medicine, University of Turku, Turku, Finland
| | - Marcella Rietschel
- Department of Genetic Epidemiology in Psychiatry, Central Institute of Mental Health, Clinical Faculty Mannheim / Heidelberg University, Mannheim, Germany
| | - Dan Rujescu
- Department of Psychiatry, University of Munich (LMU), Munich, Germany
| | - Nilesh J. Samani
- Leicester NIHR Biomedical Research Unit in Cardiovascular Disease, Department of Cardiovascular Sciences, University of Leicester, Leicester, United Kingdom
| | - Ann G. Schwartz
- Karmanos Cancer Institute, Wayne State University, Detroit, Michigan, United States of America
| | - Sanjay Shete
- Department of Epidemiology, MD Anderson, Houston, Texas, United States of America
| | - Margaret Spitz
- Department of Epidemiology, MD Anderson, Houston, Texas, United States of America
| | - Gary E. Swan
- Center for Health Sciences, SRI International, Menlo Park, California, United States of America
| | - Henry Völzke
- University Medicine Greifswald, University of Greifswald, Greifswald, Germany
| | - Juha Veijola
- Institute of Health Sciences and Biocenter Oulu, University of Oulu, Finland
| | - Qingyi Wei
- Department of Epidemiology, MD Anderson, Houston, Texas, United States of America
| | - Chris Amos
- Department of Epidemiology, MD Anderson, Houston, Texas, United States of America
| | - Dale S. Cannon
- Department of Psychiatry, University of Utah School of Medicine, Salt Lake City, Utah, United States of America
| | - Richard Grucza
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Dorothy Hatsukami
- Department of Psychiatry, University of Minnesota, Minneapolis, Minnesota, United States of America
| | - Andrew Heath
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Eric O. Johnson
- Department of Behavioral Health Epidemiology, RTI International, Research Triangle Park, North Carolina, United States of America
| | - Jaakko Kaprio
- Department of Public Health, Hjelt Institute, University of Helsinki, Helsinki, Finland
| | - Pamela Madden
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Nicholas G. Martin
- Department of Epidemiology, Queensland Institute of Medical Research, Brisbane, Queensland, Australia
| | - Victoria L. Stevens
- Department of Epidemiology Research, American Cancer Society, Atlanta, Georgia, United States of America
| | - Robert B. Weiss
- Department of Psychiatry, University of Utah School of Medicine, Salt Lake City, Utah, United States of America
| | - Peter Kraft
- Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, United States of America
| | - Laura J. Bierut
- Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, United States of America
| | - Marissa A. Ehringer
- Institute for Behavioral Genetics, University of Colorado, Boulder, Colorado, United States of America
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