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For: Otzen M, Palacio C, Janssen DB. Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics. Appl Microbiol Biotechnol 2018;102:6699-6711. [PMID: 29850960 PMCID: PMC6061476 DOI: 10.1007/s00253-018-9073-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 03/21/2018] [Accepted: 03/23/2018] [Indexed: 01/04/2023]
Number Cited by Other Article(s)
1
Liu X, Park H, Ackermann YS, Avérous L, Ballerstedt H, Besenmatter W, Blázquez B, Bornscheuer UT, Branson Y, Casey W, de Lorenzo V, Dong W, Floehr T, Godoy MS, Ji Y, Jupke A, Klankermayer J, León DS, Liu L, Liu X, Liu Y, Manoli MT, Martínez-García E, Narancic T, Nogales J, O'Connor K, Osterthun O, Perrin R, Prieto MA, Pollet E, Sarbu A, Schwaneberg U, Su H, Tang Z, Tiso T, Wang Z, Wei R, Welsing G, Wierckx N, Wolter B, Xiao G, Xing J, Zhao Y, Zhou J, Tan T, Blank LM, Jiang M, Chen GQ. Exploring biotechnology for plastic recycling, degradation and upcycling for a sustainable future. Biotechnol Adv 2025;81:108544. [PMID: 40024585 DOI: 10.1016/j.biotechadv.2025.108544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Revised: 02/19/2025] [Accepted: 02/23/2025] [Indexed: 03/04/2025]
2
Chavez‐Linares P, Hoppe S, Chevalot I. Recycling and Degradation Pathways of Synthetic Textile Fibers such as Polyamide and Elastane. GLOBAL CHALLENGES (HOBOKEN, NJ) 2025;9:2400163. [PMID: 40255241 PMCID: PMC12003217 DOI: 10.1002/gch2.202400163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2025] [Revised: 01/17/2025] [Indexed: 04/22/2025]
3
de Witt J, Luthe T, Wiechert J, Jensen K, Polen T, Wirtz A, Thies S, Frunzke J, Wynands B, Wierckx N. Upcycling of polyamides through chemical hydrolysis and engineered Pseudomonas putida. Nat Microbiol 2025;10:667-680. [PMID: 39929973 PMCID: PMC11879879 DOI: 10.1038/s41564-025-01929-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Accepted: 01/08/2025] [Indexed: 03/06/2025]
4
Jahanshahi DA, Barzani MRR, Bahram M, Ariaeenejad S, Kavousi K. Metagenomic exploration and computational prediction of novel enzymes for polyethylene terephthalate degradation. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2025;289:117640. [PMID: 39793291 DOI: 10.1016/j.ecoenv.2024.117640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 12/13/2024] [Accepted: 12/29/2024] [Indexed: 01/13/2025]
5
Zhang Q, Song J, Wu H, Wang L, Zhuo G, Li H, He S, Pan Y, Liu G. Intratumoral microbiota associates with systemic immune inflammation state in nasopharyngeal carcinoma. Int Immunopharmacol 2024;141:112984. [PMID: 39173404 DOI: 10.1016/j.intimp.2024.112984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 07/07/2024] [Accepted: 08/16/2024] [Indexed: 08/24/2024]
6
Guo W, Li D, Zhai Y, Xu X, Qiu H, Miao A, Cao X, Zhao L. Differential interaction modes of As(III)/As(V) with microbial cell membrane induces opposite effects on organic contaminant biodegradation in groundwater. ENVIRONMENT INTERNATIONAL 2024;193:109074. [PMID: 39426033 DOI: 10.1016/j.envint.2024.109074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Revised: 09/09/2024] [Accepted: 10/10/2024] [Indexed: 10/21/2024]
7
Roth S, Gandomkar S, Rossi F, Hall M. Mild hydrolysis of chemically stable valerolactams by a biocatalytic ATP-dependent system fueled by metaphosphate. GREEN CHEMISTRY : AN INTERNATIONAL JOURNAL AND GREEN CHEMISTRY RESOURCE : GC 2024;26:4498-4505. [PMID: 38654979 PMCID: PMC11033972 DOI: 10.1039/d3gc04434c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 12/07/2023] [Indexed: 04/26/2024]
8
Jahanshahi DA, Ariaeenejad S, Kavousi K. A metagenomic catalog for exploring the plastizymes landscape covering taxa, genes, and proteins. Sci Rep 2023;13:16029. [PMID: 37749380 PMCID: PMC10519993 DOI: 10.1038/s41598-023-43042-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 09/18/2023] [Indexed: 09/27/2023]  Open
9
Cui D, Cox J, Mejias E, Ng B, Gardinali P, Bagner DM, Quinete N. Evaluating non-targeted analysis methods for chemical characterization of organic contaminants in different matrices to estimate children's exposure. JOURNAL OF EXPOSURE SCIENCE & ENVIRONMENTAL EPIDEMIOLOGY 2023:10.1038/s41370-023-00547-9. [PMID: 37120701 PMCID: PMC10148696 DOI: 10.1038/s41370-023-00547-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 03/30/2023] [Accepted: 03/31/2023] [Indexed: 05/03/2023]
10
Esikova TZ, Anokhina TO, Suzina NE, Shushkova TV, Wu Y, Solyanikova IP. Characterization of a New Pseudomonas Putida Strain Ch2, a Degrader of Toxic Anthropogenic Compounds Epsilon-Caprolactam and Glyphosate. Microorganisms 2023;11:microorganisms11030650. [PMID: 36985223 PMCID: PMC10053300 DOI: 10.3390/microorganisms11030650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 02/24/2023] [Accepted: 03/01/2023] [Indexed: 03/06/2023]  Open
11
Epsilon-Caprolactam- and Nylon Oligomer-Degrading Bacterium Brevibacterium epidermidis BS3: Characterization and Potential Use in Bioremediation. Microorganisms 2023;11:microorganisms11020373. [PMID: 36838338 PMCID: PMC9966071 DOI: 10.3390/microorganisms11020373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2022] [Revised: 01/16/2023] [Accepted: 01/29/2023] [Indexed: 02/05/2023]  Open
12
Ali SS, Elsamahy T, Abdelkarim EA, Al-Tohamy R, Kornaros M, Ruiz HA, Zhao T, Li F, Sun J. Biowastes for biodegradable bioplastics production and end-of-life scenarios in circular bioeconomy and biorefinery concept. BIORESOURCE TECHNOLOGY 2022;363:127869. [PMID: 36064080 DOI: 10.1016/j.biortech.2022.127869] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Revised: 08/23/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
13
Zhao S, Pan C, Zhao J, Du H, Li M, Yu H, Chen X. Quantitative proteomic analysis of the microbial degradation of 3-aminobenzoic acid by Comamonas sp. QT12. Sci Rep 2022;12:17609. [PMID: 36266292 PMCID: PMC9584955 DOI: 10.1038/s41598-022-17570-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 07/27/2022] [Indexed: 01/13/2023]  Open
14
Lopes AR, Bunin E, Viana AT, Froufe H, Muñoz-Merida A, Pinho D, Figueiredo J, Barroso C, Vaz-Moreira I, Bellanger X, Egas C, Nunes OC. In silico prediction of the enzymes involved in the degradation of the herbicide molinate by Gulosibacter molinativorax ON4T. Sci Rep 2022;12:15502. [PMID: 36109598 PMCID: PMC9477822 DOI: 10.1038/s41598-022-18732-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 08/18/2022] [Indexed: 12/01/2022]  Open
15
Tiso T, Winter B, Wei R, Hee J, de Witt J, Wierckx N, Quicker P, Bornscheuer UT, Bardow A, Nogales J, Blank LM. The metabolic potential of plastics as biotechnological carbon sources - Review and targets for the future. Metab Eng 2021;71:77-98. [PMID: 34952231 DOI: 10.1016/j.ymben.2021.12.006] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 12/15/2021] [Accepted: 12/15/2021] [Indexed: 12/19/2022]
16
Marjanovic A, Rozeboom HJ, de Vries MS, Mayer C, Otzen M, Wijma HJ, Janssen DB. Catalytic and structural properties of ATP-dependent caprolactamase from Pseudomonas jessenii. Proteins 2021;89:1079-1098. [PMID: 33826169 PMCID: PMC8453981 DOI: 10.1002/prot.26082] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 03/04/2021] [Accepted: 03/22/2021] [Indexed: 12/14/2022]
17
Zhao S, Chen X, Sun Q, Wang F, Hu C, Guo L, Bai J, Yu H. Label-Free Quantitative Proteomic Analysis of the Global Response to Indole-3-Acetic Acid in Newly Isolated Pseudomonas sp. Strain LY1. Front Microbiol 2021;12:694874. [PMID: 34447357 PMCID: PMC8383072 DOI: 10.3389/fmicb.2021.694874] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Accepted: 06/25/2021] [Indexed: 11/13/2022]  Open
18
Mindubaev AZ, Babynin EV, Bedeeva EK, Minzanova ST, Mironova LG, Akosah YA. Biological Degradation of Yellow (White) Phosphorus, a Compound of First Class Hazard. RUSS J INORG CHEM+ 2021. [DOI: 10.1134/s0036023621080155] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
19
García-Depraect O, Bordel S, Lebrero R, Santos-Beneit F, Börner RA, Börner T, Muñoz R. Inspired by nature: Microbial production, degradation and valorization of biodegradable bioplastics for life-cycle-engineered products. Biotechnol Adv 2021;53:107772. [PMID: 34015389 DOI: 10.1016/j.biotechadv.2021.107772] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 04/01/2021] [Accepted: 05/13/2021] [Indexed: 10/21/2022]
20
Asymmetric Synthesis of Optically Pure Aliphatic Amines with an Engineered Robust ω-Transaminase. Catalysts 2020. [DOI: 10.3390/catal10111310] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
21
Thompson MG, Pearson AN, Barajas JF, Cruz-Morales P, Sedaghatian N, Costello Z, Garber ME, Incha MR, Valencia LE, Baidoo EEK, Martin HG, Mukhopadhyay A, Keasling JD. Identification, Characterization, and Application of a Highly Sensitive Lactam Biosensor from Pseudomonas putida. ACS Synth Biol 2020;9:53-62. [PMID: 31841635 DOI: 10.1021/acssynbio.9b00292] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
22
Thompson MG, Valencia LE, Blake-Hedges JM, Cruz-Morales P, Velasquez AE, Pearson AN, Sermeno LN, Sharpless WA, Benites VT, Chen Y, Baidoo EE, Petzold CJ, Deutschbauer AM, Keasling JD. Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer. Metab Eng Commun 2019;9:e00098. [PMID: 31720214 PMCID: PMC6838509 DOI: 10.1016/j.mec.2019.e00098] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 07/13/2019] [Accepted: 08/08/2019] [Indexed: 12/25/2022]  Open
23
Baxi NN, Patel S, Hansoti D. An Arthrobacter citreus strain suitable for degrading ε-caprolactam in polyamide waste and accumulation of glutamic acid. AMB Express 2019;9:161. [PMID: 31605246 PMCID: PMC6789059 DOI: 10.1186/s13568-019-0887-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2019] [Accepted: 09/27/2019] [Indexed: 11/16/2022]  Open
24
Samson R, Shah M, Yadav R, Sarode P, Rajput V, Dastager SG, Dharne MS, Khairnar K. Metagenomic insights to understand transient influence of Yamuna River on taxonomic and functional aspects of bacterial and archaeal communities of River Ganges. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019;674:288-299. [PMID: 31005831 DOI: 10.1016/j.scitotenv.2019.04.166] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 04/11/2019] [Accepted: 04/11/2019] [Indexed: 06/09/2023]
25
Palacio CM, Rozeboom HJ, Lanfranchi E, Meng Q, Otzen M, Janssen DB. Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism. FEBS J 2019;286:4086-4102. [PMID: 31162815 DOI: 10.1111/febs.14950] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 04/29/2019] [Accepted: 06/01/2019] [Indexed: 01/31/2023]
26
Zhang D, Ji X, Meng Z, Qi W, Qiao K. Effects of fumigation with 1,3-dichloropropene on soil enzyme activities and microbial communities in continuous-cropping soil. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019;169:730-736. [PMID: 30502523 DOI: 10.1016/j.ecoenv.2018.11.071] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 11/16/2018] [Accepted: 11/16/2018] [Indexed: 06/09/2023]
27
Detheridge AP, Griffith GW, Hopper DJ. Genome Sequence Analysis of Two Pseudomonas putida Strains to Identify a 17-Hydroxylase Putatively Involved in Sparteine Degradation. Curr Microbiol 2018;75:1649-1654. [PMID: 30267141 PMCID: PMC6208669 DOI: 10.1007/s00284-018-1573-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 08/29/2018] [Indexed: 11/28/2022]
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