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Silva IDOE, Boere V, de Sousa MBC. Fecal steroids of breeding and non-breeding free-ranging black-tufted marmoset females. Anim Reprod 2024; 21:e20240003. [PMID: 39629010 PMCID: PMC11614136 DOI: 10.1590/1984-3143-ar2024-0003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 07/25/2024] [Indexed: 12/06/2024] Open
Abstract
The relationships between members of the groups include behaviors related to affiliation, dispute for dominant positions, parental care, and facing disputes for food and territory. All these activities are under hormone modulation and those of a steroidal nature are heavily involved. Despite this, only few data are available on steroid hormones in free-ranging marmosets of the Callithrix genus, which limits the understanding of the physiological functioning and modulation of the socio-sexual behavior by steroid hormones of this taxon. In this study, we characterized fecal concentrations of progesterone, estrogens, and glucocorticoids of six breeding and non-breeding females from two groups of free-ranging Callithrix penicillata (É. Geoffroy, 1812). The concentration of progesterone was significantly higher in females which gave birth, compared to non-breeding females. The levels of fecal estrogens and glucocorticoids did not differ between breeding and non-breeding females. The data are in agreement with the few studies on steroid values of wild and captive marmosets. This study shows the concentrations of progesterone and glucocorticoids in free-ranging C. penicillata for the first time, and it is the only study reporting the concentration of fecal estrogens in wild marmosets. Overall, the high levels of progesterone associated with pregnancy in free-ranging C. penicillata as well as levels of estrogens and glucocorticoids close to those reported for other species, suggest a conserved pattern of hormonal secretion between Callithrix species that have been studied in captivity.
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Affiliation(s)
| | - Vanner Boere
- Universidade Federal do Sul da Bahia, Ilhéus, BA, Brasil
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2
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Malukiewicz J, Warren K, Boere V, Bandeira ILC, Curi NHA, das Dores FT, Fitorra LS, Furuya HR, Igayara CS, Milanelo L, Moreira SB, Molina CV, Nardi MS, Nicola PA, Passamani M, Pedro VS, Pereira LCM, Petri B, Pissinatti A, Quirino AA, Rogers J, Ruiz-Miranda CR, Silva DL, Silva IO, Silva MOM, Summa JL, Zwarg T, Ackermann RR. Pelage variation and morphometrics of closely related Callithrix marmoset species and their hybrids. BMC Ecol Evol 2024; 24:122. [PMID: 39304843 DOI: 10.1186/s12862-024-02305-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 08/29/2024] [Indexed: 09/22/2024] Open
Abstract
BACKGROUND Hybrids are expected to show greater phenotypic variation than their parental species, yet how hybrid phenotype expression varies with genetic distances in closely-related parental species remains surprisingly understudied. Here, we investigate pelage and morphometric trait variation in anthropogenic hybrids between four species of Brazilian Callithrix marmosets, a relatively recent primate radiation. Marmoset species are distinguishable by pelage phenotype and morphological specializations for eating tree exudates. In this work, we (1) describe qualitative phenotypic pelage differences between parental species and hybrids; (2) test whether significant quantitative differences exist between parental and hybrid morphometric phenotypes; and (3) determine which hybrid morphometic traits show heterosis, dysgenesis, trangression, or intermediacy relative to the parental trait. We investigated cranial and post-cranial morphometric traits, as most hybrid morphological studies focus on the former instead of the latter. Finally, we estimate mitogenomic distances between marmoset species from previously published data. RESULTS Marmoset hybrid facial and overall body pelage variation reflected novel combinations of coloration and patterns present in parental species. In morphometric traits, C. jacchus and C. penicillata were the most similar, while C. aurita was the most distinct, and C. geoffroyi trait measures fell between these species. Only three traits in C. jacchus x C. penicillata hybrids showed heterosis. We observed heterosis and dysgenesis in several traits of C. penicillata x C. geoffroyi hybrids. Transgressive segregation was observed in hybrids of C. aurita and the other species. These hybrids were also C. aurita-like for a number of traits, including body length. Genetic distance was closest between C. jacchus and C. penicillata and farthest between C. aurita and the other species. CONCLUSION We attributed significant morphometric differences between marmoset species to variable levels of morphological specialization for exudivory in these species. Our results suggest that intermediate or parental species-like hybrid traits relative to the parental trait values are more likely in crosses between species with relatively lesser genetic distance. More extreme phenotypic variation is more likely in parental species with greater genetic distance, with transgressive traits appearing in hybrids of the most genetically distant parental species. We further suggest that fewer developmental disturbances can be expected in hybrids of more recently diverged parental species, and that future studies of hybrid phenotypic variation should investigate selective pressures on Callithrix cranial and post-cranial morphological traits.
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Affiliation(s)
- Joanna Malukiewicz
- Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, Martin-Luther-King-Platz 3, Hamburg, Germany.
- Faculty of Medicine, University of São Paulo, Av. Dr. Arnaldo, 455 - Cerqueira César, Pacaembu, 01246-903, São Paulo, Brazil.
| | - Kerryn Warren
- Department of Archaeology, University of Cape Town, Rondebosch, 7701, Cape Town, South Africa
- Human Evolution Research Institute, University of Cape Town, Rondebosch, 7701, Cape Town, South Africa
| | - Vanner Boere
- Institute of Humanities, Arts, and Sciences at the Federal University of Southern Bahia, Rodovia de Acesso para Itabuna, km 39 - Ferradas, 45613-204, Itabuna, Brazil
| | - Illaira L C Bandeira
- Centro de Conservação e Manejo de Fauna da Caatinga, Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, BR 407, Km 12, lote 543, Projeto de Irrigação Nilo Coelho - S/N C1, 56300-000, Petrolina, Brazil
| | - Nelson H A Curi
- Curso de Medicina Veterinária, Centro Universitário de Lavras, Rua Padre José Poggel, 506 - Padre Dehon, 37203-593, Lavras, Brazil
| | - Fabio T das Dores
- Centro de Triagem e Recuperação de Animais Silvestres, Rodovia Parque, 8055 - Vila Santo Henrique, 03719-000, São Paulo, Brazil
| | - Lilian S Fitorra
- Centro de Triagem e Recuperação de Animais Silvestres, Rodovia Parque, 8055 - Vila Santo Henrique, 03719-000, São Paulo, Brazil
| | - Haroldo R Furuya
- Centro de Triagem e Recuperação de Animais Silvestres, Rodovia Parque, 8055 - Vila Santo Henrique, 03719-000, São Paulo, Brazil
| | - Claudia S Igayara
- Zoológico Municipal de Guarulhos, Av. Doná Glória Pagnonceli, 344 - Jardim Rosa de Franca, Guarulhos, 07081-120, Guarulhos, Brazil
| | - Liliane Milanelo
- Centro de Triagem e Recuperação de Animais Silvestres, Rodovia Parque, 8055 - Vila Santo Henrique, 03719-000, São Paulo, Brazil
| | - Silvia B Moreira
- Centro de Primatologia do Rio de Janeiro, Estr. do Paraíso, s/n - Paraíso, 25940-000, Guapimirim, Brazil
| | - Camila V Molina
- Programa de Interunidades em Biotecnologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, Av. Prof. Lineu Prestes , n° 1524 - Butantã, 05508-000, São Paulo, Brazil
| | - Marcello S Nardi
- Prefeitura Municipal de São Paulo, Secretaria Municipal do Verde e Meio Ambiente - DEPAVE, Avenida IV Centenario, portão 7A - Pq. Ibirapuera Jd. Luzitânia, 00000-000, São Paulo, Brazil
| | - Patricia A Nicola
- Programa de Pós-Graduação, Ciências da Saúde e Biológicas, Universidade Federal do Vale do São Francisco, Av. José de Sá Maniçoba, S/N - Centro, 56304-917 -, Petrolina, Brazil
| | - Marcelo Passamani
- Laboratório de Ecologia e Conservação de Mamíferos, Departamento de Ecologia e Conservação, Universidade Federal de Lavras, Av. Central s/n Campus Universitário, 37200-000, Lavras, Brazil
| | - Valeria S Pedro
- Centro de Triagem e Recuperação de Animais Silvestres, Rodovia Parque, 8055 - Vila Santo Henrique, 03719-000, São Paulo, Brazil
| | - Luiz C M Pereira
- Centro de Conservação e Manejo de Fauna da Caatinga, Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, BR 407, Km 12, lote 543, Projeto de Irrigação Nilo Coelho - S/N C1, 56300-000, Petrolina, Brazil
| | - Bruno Petri
- Centro de Triagem e Recuperação de Animais Silvestres, Rodovia Parque, 8055 - Vila Santo Henrique, 03719-000, São Paulo, Brazil
| | - Alcides Pissinatti
- Centro de Primatologia do Rio de Janeiro, Estr. do Paraíso, s/n - Paraíso, 25940-000, Guapimirim, Brazil
| | - Adriana Alves Quirino
- Centro de Conservação e Manejo de Fauna da Caatinga, Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, BR 407, Km 12, lote 543, Projeto de Irrigação Nilo Coelho - S/N C1, 56300-000, Petrolina, Brazil
| | - Jeffrey Rogers
- Human Genome Sequencing Center and Dept. of Molecular and Human Genetics, Baylor College of Medicine, 1 Baylor Plaza, Houston, 77030, Houston, USA
| | - Carlos R Ruiz-Miranda
- Laboratory of Environmental Sciences, Center for Biosciences and Biotechnology at Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego, 2000 - Parque Califórnia, 28013-602 , Campos dos Goytacazes, Brazil
| | - Daniel L Silva
- Núcleo de Pesquisas em Ciências Biológicas - NUPEB, Federal University of Ouro Preto, R. Três, 408-462, 35400-000, Ouro Preto, Brazil
| | - Ita O Silva
- Institute of Humanities, Arts, and Sciences at the Federal University of Southern Bahia, Rodovia de Acesso para Itabuna, km 39 - Ferradas, 45613-204, Itabuna, Brazil
| | - Monique O M Silva
- Instituto de Ciências Biológicas e da Saúde, Universidade Federal Rural do Rio de Janeiro, Rodovia BR 465, Km 07 - Zona Rural, 23890-000, Seropédica, Brazil
| | - Juliana L Summa
- Prefeitura Municipal de São Paulo, Secretaria Municipal do Verde e Meio Ambiente - DEPAVE, Avenida IV Centenario, portão 7A - Pq. Ibirapuera Jd. Luzitânia, 00000-000, São Paulo, Brazil
| | - Ticiana Zwarg
- Prefeitura Municipal de São Paulo, Secretaria Municipal do Verde e Meio Ambiente - DEPAVE, Avenida IV Centenario, portão 7A - Pq. Ibirapuera Jd. Luzitânia, 00000-000, São Paulo, Brazil
| | - Rebecca R Ackermann
- Department of Archaeology, University of Cape Town, Rondebosch, 7701, Cape Town, South Africa
- Human Evolution Research Institute, University of Cape Town, Rondebosch, 7701, Cape Town, South Africa
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3
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Bataillard L, Eriksen A, de Melo FR, Milagres AP, Devineau O, Vital OV. Using ecological niche modelling to prioritise areas for conservation of the critically endangered Buffy-Headed marmoset ( Callithrix flaviceps). Ecol Evol 2024; 14:e11203. [PMID: 38584769 PMCID: PMC10995821 DOI: 10.1002/ece3.11203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 03/13/2024] [Accepted: 03/18/2024] [Indexed: 04/09/2024] Open
Abstract
Endemic to the Atlantic Forest in Southeastern Brazil, the critically endangered Buffy-Headed marmoset (Callithrix flaviceps) is lacking the required attention for effective conservation. We modelled its ecological niche with the main objectives of (1) defining suitable habitat and (2) prioritising areas for conservation and/or restoration. The current geographical range of Callithrix flaviceps in the Atlantic Forest of Southeast Brazil. We used Ensemble Species Distribution Modelling to define current habitat suitability considering four climate and two landscape variables. To identify areas to prioritise for conservation and/or restoration, we predicted future habitat suitability considering the intermediate (RCP4.5) and extreme (RCP8.5) climate change scenarios for the years 2050 and 2070. Among the variables included to predict current species distribution, tree canopy cover, precipitation seasonality and temperature seasonality were the most important whereas digital elevation model and precipitation during the wettest month were the least important. Callithrix flaviceps was most likely to occur in areas with tree canopy cover >80%, high precipitation seasonality and temperature seasonality between 21 and 23°C. From the future suitability prediction maps, the Caparaó National Park stands out as a likely key area for the preservation of the species. Furthermore, high climatic suitability but low landscape suitability suggests that habitat restoration in 'Serra das Torres' (South of the current distribution area) might be a useful strategy. However, creating ecological corridors on the west side of Caparaó would be necessary to improve connectivity. More surveys within and beyond the current geographical range are required to define more precisely the distribution of the species. Our results support the notion that seasonality is important for Callithrix flaviceps and that as a montane species, it prefers colder environments and higher altitudes. Within both climate change scenarios, Caparaó National Park was predicted to be highly suitable, with a high probability of presence.
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Affiliation(s)
- Léa Bataillard
- Department of Forestry and Wildlife ManagementInland Norway University of Applied SciencesKoppangNorway
| | - Ane Eriksen
- Department of Forestry and Wildlife ManagementInland Norway University of Applied SciencesKoppangNorway
| | - Fabiano R. de Melo
- Department of Forestry EngineeringFederal University of ViçosaViçosaMinas GeraisBrazil
| | | | - Olivier Devineau
- Department of Forestry and Wildlife ManagementInland Norway University of Applied SciencesKoppangNorway
| | - Orlando Vítor Vital
- Department of Forestry EngineeringFederal University of ViçosaViçosaMinas GeraisBrazil
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Sales I, Vieira-da-Motta O, Tavares A, Ruiz-Miranda CR, de Lencastre H, Miragaia M. Impact of human created environments in the pathogenic potential and antimicrobial resistance of staphylococci from wild neotropical primates in Brazil. Comp Immunol Microbiol Infect Dis 2024; 104:102094. [PMID: 38035481 DOI: 10.1016/j.cimid.2023.102094] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 11/05/2023] [Accepted: 11/13/2023] [Indexed: 12/02/2023]
Abstract
The non-human primate (NHP) Leontopithecus rosalia is an endangered species native of Brazil and lives in forest fragments with different levels of contact with humans (natural, private and urban). Other NHPs - Callithrix spp. - were introduced by humans and co-exist and interact with the native species in these forests. To evaluate if living in or close to human-modified environments could constitute a risk for L. rosalia, we compared the prevalence, genetic background, antibiotic susceptibility and virulence gene content of staphylococci collected from the native and the introduced species from different forest fragments. We found that presence in human-dominated environments increased the colonization rate of L. rosalia with Mammaliicoccus sciuri (former Staphylococcus sciuri) from 18 % to 85 % (p = 0.0001) and of Callithrix spp with Staphylococcus aureus from 6 % to 100 % (p = 0.0001). According to molecular typing data obtained differences probably resulted from dissemination of these bacterial species from the invader NHP species and from humans. Changes in microbiota were paralleled by an increase in the prevalence of Panton-Valentine Leukocidin gene and in resistance to beta-lactams, macrolides and/or lincosamides as exposure to human environment increased. In particular, erythromycin resistance in S. aureus from Callithrix spp. increased from 0 % to 50 % and resistance rate to at least one antibiotic in coagulase-negative staphylococci species from L. rosalia increased from 13 % to 56 % (p = 0.0003). Our results showed that contact of native animal species with human-created environments increased the content of antimicrobial resistant and pathogenic bacteria on their commensal microbiota, which ultimately can impact on their health. IMPORTANCE: Endangered animal species are vulnerable to environmental alterations and human activities have been repeatedly identified as factors driving drastic changes in the natural landscape. It is extremely important to monitor changes in the environment surrounding protected species, because this could lead to early detection of any potential threats. In this study, we found that the contact of L. rosalia - a protected non-human primate from Brazil - with human environments is related to changes in their commensal microbiota. These included an increase in the number of pathogenic and antibiotic resistant bacteria, which have a higher potential to cause infections that are more difficult to treat. We provided evidence for the harmful impact human contact has on L. rosalia. Also, our results suggest that monitoring of commensal microbiota of protected animal species might be a useful way of sensing the risks of protected species to human exposure.
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Affiliation(s)
- Indiara Sales
- Laboratory of Bacterial Evolution and Molecular Epidemiology, Instituto de Tecnologia Química e Biológica António Xavier, NOVA University (ITQB-NOVA), Oeiras, Portugal; Universidade Estadual do Norte Fluminense Darcy Ribeiro-UENF, Centro de Ciências e Tecnologias Agropecuárias, Laboratório de Sanidade Animal-Setor Doenças Infecto-contagiosas, Rio de Janeiro, Brazil
| | - Olney Vieira-da-Motta
- Universidade Estadual do Norte Fluminense Darcy Ribeiro-UENF, Centro de Ciências e Tecnologias Agropecuárias, Laboratório de Sanidade Animal-Setor Doenças Infecto-contagiosas, Rio de Janeiro, Brazil
| | - Ana Tavares
- Laboratory of Molecular Genetics, Instituto de Tecnologia Química e Biológica António Xavier, NOVA University (ITQB-NOVA), Oeiras, Portugal
| | - Carlos Ramón Ruiz-Miranda
- Universidade Estadual do Norte Fluminense Darcy Ribeiro-UENF, Centro de Biociências e Biotecnologia, Laboratório de Ciências Ambientais, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Hermínia de Lencastre
- Laboratory of Molecular Genetics, Instituto de Tecnologia Química e Biológica António Xavier, NOVA University (ITQB-NOVA), Oeiras, Portugal; Laboratory of Microbiology & Infectious Diseases, The Rockefeller University, New York, USA
| | - Maria Miragaia
- Laboratory of Bacterial Evolution and Molecular Epidemiology, Instituto de Tecnologia Química e Biológica António Xavier, NOVA University (ITQB-NOVA), Oeiras, Portugal.
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Costa-Araújo R, Bergamasco G, Roos C, Farias IP, Hrbek T. Notes on the distribution and habitat use of marmosets (Callitrichidae: Mico) from south-central Amazonia. Primate Biol 2023; 10:7-11. [PMID: 37560614 PMCID: PMC10407307 DOI: 10.5194/pb-10-7-2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 06/13/2023] [Indexed: 08/11/2023] Open
Abstract
Currently, 15 species of Amazon marmosets (genus Mico) are known to science. The Amazon marmosets occur primarily in southern Brazilian Amazonia, the arc of deforestation, and are among the least studied primates of the neotropics. This is particularly the case for M. acariensis and M. chrysoleucos, both endemic to the Aripuanã-Sucundurí interfluve, south-central Amazonia. Mico acariensis was not studied beyond the species description, and the only information currently available is the pelage colouration of the holotype, inferred coordinates of the type locality, and a field report with two additional localities of occurrence. Regarding M. chrysoleucos, in addition to the species description, there are taxonomic reviews, the report of a second occurrence record, and a study on the species range. We provide here new occurrence records that extend the distribution of M. chrysoleucos; provide new records for and update the distribution of M. acariensis; and propose the existence of a hybrid zone in the Aripuanã-Sucundurí interfluve, i.e. around the known distribution boundaries of M. acariensis, M. chrysoleucos, and M. melanurus, and we also discuss habitat use patterns of Amazon marmosets.
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Affiliation(s)
- Rodrigo Costa-Araújo
- Primates Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, 37077 Göttingen, Germany
| | - Giovanna Bergamasco
- Graduate Program in Ecology, Evolution and Biodiversity, São Paulo State University, Rio Claro, 13506-900, Brazil
| | - Christian Roos
- Primates Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, 37077 Göttingen, Germany
- Gene Bank of Primates, German Primate Center, Leibniz Institute for Primate Research, 37077 Göttingen, Germany
| | - Izeni Pires Farias
- Evolution and Animal Genetics Laboratory, Federal University of Amazonas, Manaus, 69077-000, Brazil
| | - Tomas Hrbek
- Evolution and Animal Genetics Laboratory, Federal University of Amazonas, Manaus, 69077-000, Brazil
- Department of Biology, Trinity University, San Antonio, Texas 78212-7200, United States of America
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Gestich CC, Gonçalves JM, Saranholi BH, Freitas PD, Galetti PM. Population estimates of the endangered Callithrix aurita and Callithrix hybrids records in a large Atlantic Forest remnant. Folia Primatol (Basel) 2022. [DOI: 10.1163/14219980-20211206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Abstract
Forest-dependent species are among the most threatened species due to landscape changes, and this is the case of the buffy-tufted-ear marmoset (Callithrix aurita), an Atlantic Forest endemic primate. Besides its extensive habitat reduction across Atlantic Forest, the species suffers from the negative impact of the presence of non-native congeners that threatens its local populations due to competition and hybridization events. Knowing the population status of this endangered species is important to guide conservation efforts. Thus, we estimated the population density of C. aurita and recorded the presence of invasive Callithrix species and Callithrix hybrids in Serra do Japi, a large forest remnant with mountainous terrain within the most human-populated region of the State of São Paulo, Brazil. We surveyed a 14.8 km2 area with 387.2 km of survey effort. We estimated a sighting rate of 4.4 groups/10 km walked. The maximum number of individuals recorded per group ranged from 7 to 12. We identified 15 groups throughout the sampled area, totalling 1.01 groups/km2. Two individuals from two distinct groups presented body pelage characteristic of hybrids between C. aurita and other Callithrix species. No individuals of other Callithrix species were recorded within the surveyed area. Considering the total size of this remnant and the potential population size of C. aurita inhabiting this area, this local population may be an important source of individuals for helping the conservation and long-term persistence of the species. However, the presence of Callithrix hybrids in the area is worrying and may threaten the local native population. Our study reinforces the concern with C. aurita conservation and the need for studies focused on the management of hybrids and invasive Callithrix species. Mitigation measures should be directed to readily control hybridization to keep this large population of Serra do Japi safe.
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Affiliation(s)
- Carla C. Gestich
- Departamento de Genética e Evolução, Centro de Ciências Biológicas e da Saúde/Universidade Federal de São Carlos, São Carlos, (SP), 13565-905, Brazil
| | - João M. Gonçalves
- Departamento de Genética e Evolução, Centro de Ciências Biológicas e da Saúde/Universidade Federal de São Carlos, São Carlos, (SP), 13565-905, Brazil
- IJAPI – Instituto Japi de Pesquisa, Ações Ambientais e Desenvolvimento Humano, Cabreúva, (SP), Brazil
| | - Bruno H. Saranholi
- Departamento de Genética e Evolução, Centro de Ciências Biológicas e da Saúde/Universidade Federal de São Carlos, São Carlos, (SP), 13565-905, Brazil
- Department of Life Sciences, Imperial College London, Ascot, UK
| | - Patrícia D. Freitas
- Departamento de Genética e Evolução, Centro de Ciências Biológicas e da Saúde/Universidade Federal de São Carlos, São Carlos, (SP), 13565-905, Brazil
| | - Pedro M. Galetti
- Departamento de Genética e Evolução, Centro de Ciências Biológicas e da Saúde/Universidade Federal de São Carlos, São Carlos, (SP), 13565-905, Brazil
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7
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Nogueira DM, de Carvalho RS, de Oliveira AM, de Paula TS, Pereira DG, Pissinatti A, Loiola SDO, Carvalho EF, Silva DA, Bergallo HG, Ferreira AMDR. Uniparental genetic markers to investigate hybridization in wild-born marmosets with a mixed phenotype among Callithrix aurita and invasive species. Sci Rep 2022; 12:1487. [PMID: 35087079 PMCID: PMC8795268 DOI: 10.1038/s41598-021-04276-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 12/20/2021] [Indexed: 11/09/2022] Open
Abstract
The native marmoset of the Southeastern Atlantic Forest in Brazil is among the 25 most endangered primates of the world. Hybridization with alien species is one of its main threats registered since the early 2000s based on phenotype, so far, without genetic confirmation. Using uniparental molecular markers, we analyzed 18 putative hybrids, captured from 2004 to 2013 in different localities of the Atlantic Forest. A nine base pair deletion in the SRY gene of C. aurita was used to investigate paternal ancestry. Maternal ancestry was assessed by DNA sequencing of ca. 455 bp from the COX2 gene. Hybridization was confirmed for 16 out of the 18 marmosets since they inherited COX2 haplotypes of the alien C. penicillata or C. jacchus and the SRY deletion specific to C. aurita. Two individuals inherited both parental lineages of C. aurita, which is probably related to backcrossing or hybrid interbreeding. The direction of hybridization of females with the matrilineal lineage of invasive species with males descending from the native lineage was predominant in our sampling. This is the first time that hybridization between C. aurita and invasive species has been confirmed through genetic analysis.
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Affiliation(s)
- Denise Monnerat Nogueira
- Departamento de Genética, Instituto de Ciências Biológicas e da Saúde, Universidade Federal Rural do Rio de Janeiro, BR-465, Km 07, Seropédica, Rio de Janeiro, CEP 23897000, Brazil.
| | | | - Andréa Maria de Oliveira
- Departamento de Genética, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Thiago Silva de Paula
- Departamento de Genética, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | | | - Alcides Pissinatti
- Centro de Primatologia do Rio de Janeiro, INEA, Guapimirim, Rio de Janeiro, Brazil
| | - Silvia de Oliveira Loiola
- Laboratório de Diagnósticos por DNA, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Elizeu Fagundes Carvalho
- Laboratório de Diagnósticos por DNA, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Dayse Aparecida Silva
- Departamento de Ecologia, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Helena Godoy Bergallo
- Departamento de Ecologia, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil
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8
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Malukiewicz J, Boere V, de Oliveira MAB, D'arc M, Ferreira JVA, French J, Housman G, de Souza CI, Jerusalinsky L, R de Melo F, M Valença-Montenegro M, Moreira SB, de Oliveira E Silva I, Pacheco FS, Rogers J, Pissinatti A, Del Rosario RCH, Ross C, Ruiz-Miranda CR, Pereira LCM, Schiel N, de Fátima Rodrigues da Silva F, Souto A, Šlipogor V, Tardif S. An Introduction to the Callithrix Genus and Overview of Recent Advances in Marmoset Research. ILAR J 2021; 61:110-138. [PMID: 34933341 DOI: 10.1093/ilar/ilab027] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 02/12/2021] [Accepted: 06/23/2021] [Indexed: 12/12/2022] Open
Abstract
We provide here a current overview of marmoset (Callithrix) evolution, hybridization, species biology, basic/biomedical research, and conservation initiatives. Composed of 2 subgroups, the aurita group (C aurita and C flaviceps) and the jacchus group (C geoffroyi, C jacchus, C kuhlii, and C penicillata), this relatively young primate radiation is endemic to the Brazilian Cerrado, Caatinga, and Atlantic Forest biomes. Significant impacts on Callithrix within these biomes resulting from anthropogenic activity include (1) population declines, particularly for the aurita group; (2) widespread geographic displacement, biological invasions, and range expansions of C jacchus and C penicillata; (3) anthropogenic hybridization; and (4) epizootic Yellow Fever and Zika viral outbreaks. A number of Brazilian legal and conservation initiatives are now in place to protect the threatened aurita group and increase research about them. Due to their small size and rapid life history, marmosets are prized biomedical models. As a result, there are increasingly sophisticated genomic Callithrix resources available and burgeoning marmoset functional, immuno-, and epigenomic research. In both the laboratory and the wild, marmosets have given us insight into cognition, social group dynamics, human disease, and pregnancy. Callithrix jacchus and C penicillata are emerging neotropical primate models for arbovirus disease, including Dengue and Zika. Wild marmoset populations are helping us understand sylvatic transmission and human spillover of Zika and Yellow Fever viruses. All of these factors are positioning marmosets as preeminent models to facilitate understanding of facets of evolution, hybridization, conservation, human disease, and emerging infectious diseases.
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Affiliation(s)
- Joanna Malukiewicz
- Primate Genetics Laboratory, German Primate Centre, Leibniz Institute for Primate Research, Goettingen, Germany
| | - Vanner Boere
- Institute of Humanities, Arts, and Sciences, Federal University of Southern Bahia, Itabuna, Bahia, Brazil
| | | | - Mirela D'arc
- Department of Genetics, Federal University of Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Jéssica V A Ferreira
- Centro de Conservação e Manejo de Fauna da Caatinga, UNIVASF, Petrolina, Pernambuco, Brazil
| | - Jeffrey French
- Department of Psychology, University of Nebraska Omaha, Omaha, Nebraska, USA
| | | | | | - Leandro Jerusalinsky
- Instituto Chico Mendes de Conservação da Biodiversidade, Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros (ICMBio/CPB), Cabedelo, Paraíba, Brazil
| | - Fabiano R de Melo
- Department of Forest Engineering, Federal University of Viçosa, Viçosa, Minas Gerais, Brazil
- Centro de Conservação dos Saguis-da-Serra, Federal University of Viçosa, Viçosa, Minas Gerais, Brazil
| | - Mônica M Valença-Montenegro
- Instituto Chico Mendes de Conservação da Biodiversidade, Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros (ICMBio/CPB), Cabedelo, Paraíba, Brazil
| | | | - Ita de Oliveira E Silva
- Institute of Humanities, Arts, and Sciences, Federal University of Southern Bahia, Itabuna, Bahia, Brazil
| | - Felipe Santos Pacheco
- Centro de Conservação dos Saguis-da-Serra, Federal University of Viçosa, Viçosa, Minas Gerais, Brazil
- Post-Graduate Program in Animal Biology, Federal University of Viçosa, Viçosa, Minas Gerais, Brazil
| | - Jeffrey Rogers
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
| | - Alcides Pissinatti
- Centro de Primatologia do Rio de Janeiro, Guapimirim, Rio de Janeiro, Brazil
| | - Ricardo C H Del Rosario
- Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
| | - Corinna Ross
- Science and Mathematics, Texas A&M University San Antonio, San Antonio, Texas, USA
- Texas Biomedical Research Institute, Southwest National Primate Research Center, San Antonio, Texas, USA
| | - Carlos R Ruiz-Miranda
- Laboratory of Environmental Sciences, Center for Biosciences and Biotechnology, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Luiz C M Pereira
- Centro de Conservação e Manejo de Fauna da Caatinga, UNIVASF, Petrolina, Pernambuco, Brazil
| | - Nicola Schiel
- Department of Biology, Federal Rural University of Pernambuco, Recife, Brazil
| | | | - Antonio Souto
- Department of Zoology, Federal University of Pernambuco, Recife, Pernambuco, Brazil
| | - Vedrana Šlipogor
- Department of Behavioral and Cognitive Biology, University of Vienna, Vienna, Austria
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Suzette Tardif
- Texas Biomedical Research Institute, Southwest National Primate Research Center, San Antonio, Texas, USA
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Ottenburghs J. The genic view of hybridization in the Anthropocene. Evol Appl 2021; 14:2342-2360. [PMID: 34745330 PMCID: PMC8549621 DOI: 10.1111/eva.13223] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 03/10/2021] [Accepted: 03/10/2021] [Indexed: 12/24/2022] Open
Abstract
Human impact is noticeable around the globe, indicating that a new era might have begun: the Anthropocene. Continuing human activities, including land-use changes, introduction of non-native species and rapid climate change, are altering the distributions of countless species, often giving rise to human-mediated hybridization events. While the interbreeding of different populations or species can have detrimental effects, such as genetic extinction, it can be beneficial in terms of adaptive introgression or an increase in genetic diversity. In this paper, I first review the different mechanisms and outcomes of anthropogenic hybridization based on literature from the last five years (2016-2020). The most common mechanisms leading to the interbreeding of previously isolated taxa include habitat change (51% of the studies) and introduction of non-native species (34% intentional and 19% unintentional). These human-induced hybridization events most often result in introgression (80%). The high incidence of genetic exchange between the hybridizing taxa indicates that the application of a genic view of speciation (and introgression) can provide crucial insights on how to address hybridization events in the Anthropocene. This perspective considers the genome as a dynamic collection of genetic loci with distinct evolutionary histories, giving rise to a heterogenous genomic landscape in terms of genetic differentiation and introgression. First, understanding this genomic landscape can lead to a better selection of diagnostic genetic markers to characterize hybrid populations. Second, describing how introgression patterns vary across the genome can help to predict the likelihood of negative processes, such as demographic and genetic swamping, as well as positive outcomes, such as adaptive introgression. It is especially important to not only quantify how much genetic material introgressed, but also what has been exchanged. Third, comparing introgression patterns in pre-Anthropocene hybridization events with current human-induced cases might provide novel insights into the likelihood of genetic swamping or species collapse during an anthropogenic hybridization event. However, this comparative approach remains to be tested before it can be applied in practice. Finally, the genic view of introgression can be combined with conservation genomic studies to determine the legal status of hybrids and take appropriate measures to manage anthropogenic hybridization events. The interplay between evolutionary and conservation genomics will result in the constant exchange of ideas between these fields which will not only improve our knowledge on the origin of species, but also how to conserve and protect them.
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Affiliation(s)
- Jente Ottenburghs
- Wildlife Ecology and ConservationWageningen University & ResearchWageningenThe Netherlands
- Forest Ecology and Forest ManagementWageningen University & ResearchWageningenThe Netherlands
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10
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Guimarães-Lopes VDP, Gomes MRVS, Kagueyama M, Faria RDCV, Ribeiro Filho OP, Melo FRD, Sartori SSR. Histometric parameters of the large intestine of hybrid marmosets Callithrix sp. under the influence of seasonality. Anat Histol Embryol 2021; 50:888-896. [PMID: 34462952 DOI: 10.1111/ahe.12732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 08/18/2021] [Accepted: 08/19/2021] [Indexed: 12/01/2022]
Abstract
Morphofunctional characteristics of the large intestine are rarely explored to understand the physiology, behavior and ecology of neotropical primates. In this study, we analyzed the histometric parameters of the large intestine of hybrid marmosets (Callithrix sp.) captured in forest fragments of Viçosa-Brazil, under seasonal interference. These animals were predominantly insectivorous in the rainy season and gummivores in the dry season. Large intestine fragments were collected and processed according to histological methods and stained with toluidine blue for general analysis, periodic acid of Schiff (PAS) and Alcian blue (AB) for goblet cells, Grimelius and Masson Fontana for argyrophil and argentaffin endocrine cells. Several histometric parameters were more expressive in the large intestine of the rainy season marmosets: greater thickness of the parietal layers, greater number of argyrophil and argentaffin endocrine cells, and AB-positive goblet cells, characteristics favor secretomotor functions and reduce the passage time of the fecal bolus, which is consistent with an insectivorous diet. In contrast, parameters such as crypt width, height of the absorptive cells and striated border, and the number of PAS-positive cells were more expressive in the dry season marmosets, reflecting the need for longer passage time for digestion and absorption of food items from tree gum, which are more complex and demand the action of microorganisms present in the large intestine, as well as greater protection against the abrasive action of dietary fibers and against microorganisms. Thus, it can be said that the marmoset's large intestine has morphological adaptations to maximize energy intake from the diet, which alternates under the influence of seasonality.
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Affiliation(s)
- Vanessa de Paula Guimarães-Lopes
- Departamento de Biologia Animal, Universidade Federal de Viçosa, Viçosa, Brazil.,Departamento de Biologia Geral, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | | | - Mislene Kagueyama
- Departamento de Biologia Animal, Universidade Federal de Viçosa, Viçosa, Brazil
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11
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Malukiewicz J, Cartwright RA, Dergam JA, Igayara CS, Nicola PA, Pereira LMC, Ruiz-Miranda CR, Stone AC, Silva DL, Silva FDFRD, Varsani A, Walter L, Wilson MA, Zinner D, Roos C. Genomic skimming and nanopore sequencing uncover cryptic hybridization in one of world's most threatened primates. Sci Rep 2021; 11:17279. [PMID: 34446741 PMCID: PMC8390465 DOI: 10.1038/s41598-021-96404-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 08/10/2021] [Indexed: 12/28/2022] Open
Abstract
The Brazilian buffy-tufted-ear marmoset (Callithrix aurita), one of the world's most endangered primates, is threatened by anthropogenic hybridization with exotic, invasive marmoset species. As there are few genetic data available for C. aurita, we developed a PCR-free protocol with minimal technical requirements to rapidly generate genomic data with genomic skimming and portable nanopore sequencing. With this direct DNA sequencing approach, we successfully determined the complete mitogenome of a marmoset that we initially identified as C. aurita. The obtained nanopore-assembled sequence was highly concordant with a Sanger sequenced version of the same mitogenome. Phylogenetic analyses unexpectedly revealed that our specimen was a cryptic hybrid, with a C. aurita phenotype and C. penicillata mitogenome lineage. We also used publicly available mitogenome data to determine diversity estimates for C. aurita and three other marmoset species. Mitogenomics holds great potential to address deficiencies in genomic data for endangered, non-model species such as C. aurita. However, we discuss why mitogenomic approaches should be used in conjunction with other data for marmoset species identification. Finally, we discuss the utility and implications of our results and genomic skimming/nanopore approach for conservation and evolutionary studies of C. aurita and other marmosets.
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Affiliation(s)
- Joanna Malukiewicz
- German Primate Center, Leibniz Institute for Primate Research, Primate Genetics Laboratory, Göttingen, 37077, Germany.
- Universidade de São Paulo, Faculdade de Medicina, São Paulo, São Paulo, 05403-000, Brazil.
| | - Reed A Cartwright
- School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ, 85281, USA
| | - Jorge A Dergam
- Departamento de Biologia Animal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brazil
| | | | - Patricia A Nicola
- Centro de Conservação e Manejo de Fauna da Caatinga, Universidade Federal do Vale do São Francisco, Petrolina, PE, 56300-000, Brazil
| | - Luiz M C Pereira
- Centro de Conservação e Manejo de Fauna da Caatinga, Universidade Federal do Vale do São Francisco, Petrolina, PE, 56300-000, Brazil
| | - Carlos R Ruiz-Miranda
- Laboratório das Ciências Ambientais, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, RJ, 28013-602, Brazil
| | - Anne C Stone
- School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, 85281, USA
- Arizona State University, Institute of Human Origins, Tempe, AZ, 85281, USA
- Center for Evolution and Medicine, Arizona State University, Tempe, AZ, 85287, USA
| | - Daniel L Silva
- Núcleo de Pesquisas em Ciências Biológicas - NUPEB, Federal University of Ouro Preto, Ouro Preto, MG, 35400-000, Brazil
| | | | - Arvind Varsani
- The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA
- Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Rondebosch, Cape Town, 7700, South Africa
| | - Lutz Walter
- German Primate Center, Leibniz Institute for Primate Research, Primate Genetics Laboratory, Göttingen, 37077, Germany
| | - Melissa A Wilson
- Center for Evolution and Medicine, Arizona State University, Tempe, AZ, 85287, USA
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA
| | - Dietmar Zinner
- German Primate Center, Leibniz Institute for Primate Research, Cognitive Ethology Laboratory, Göttingen, 37077, Germany
- Leibniz ScienceCampus Primate Cognition, Göttingen, 37077, Germany
- Department of Primate Cognition, Georg-August-University, Göttingen, 37077, Germany
| | - Christian Roos
- German Primate Center, Leibniz Institute for Primate Research, Primate Genetics Laboratory, Göttingen, 37077, Germany
- German Primate Center, Leibniz Institute for Primate Research, Gene Bank of Primates, Göttingen, 37077, Germany
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12
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Palmer A, Sommer V, Msindai JN. Hybrid apes in the Anthropocene: Burden or asset for conservation? PEOPLE AND NATURE 2021; 3:573-586. [PMID: 34805779 PMCID: PMC8581989 DOI: 10.1002/pan3.10214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 04/01/2021] [Indexed: 11/08/2022] Open
Abstract
Conservationists often view hybrid animals as problematic, at least if anthropogenic influence caused the intermixing to occur. However, critics propose that humans should respect non-human autonomy, reject and accept the creatures they have helped to create.Based on two case studies of our own ethological, genetic and ethnographic research about chimpanzee and orangutan subspecies hybrids, we assess what, if anything, should be done about such animals. We consider problems posed by cross-bred apes relating to: (a) Breeding-Do hybrids really experience reduced reproductive success? How are population-level concerns and welfare of individual animals balanced in conservation breeding? (b) Essentialism-Are anti-hybrid arguments based on essentialist or purist thinking? Does essentialism vary by conservation context? (c) Pragmatism-How do socio-economic circumstances influence whether hybrids are embraced or ignored? Does the erosion of 'untouched nature' render hybrids more important?We show that answers to these questions are complex and context-specific, and that therefore decisions should be made on a case-by-case basis. For example, we find that anti-hybrid arguments are essentialist in some cases (e.g. ape management in zoos) but not in others (e.g. ape reintroduction). Thus, rather than present recommendations, we conclude by posing nine questions that conservationists should ask themselves when making decisions about taxonomic hybrids. A free Plain Language Summary can be found within the Supporting Information of this article.
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Affiliation(s)
- Alexandra Palmer
- School of Geography and the EnvironmentUniversity of OxfordOxfordUK
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13
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Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics 2021; 22:239. [PMID: 33823806 PMCID: PMC8025498 DOI: 10.1186/s12864-021-07533-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Accepted: 03/15/2021] [Indexed: 12/04/2022] Open
Abstract
Background Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results We report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion Our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07533-1.
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Ayoola AO, Zhang BL, Meisel RP, Nneji LM, Shao Y, Morenikeji OB, Adeola AC, Ng’ang’a SI, Ogunjemite BG, Okeyoyin AO, Roos C, Wu DD. Population Genomics Reveals Incipient Speciation, Introgression, and Adaptation in the African Mona Monkey (Cercopithecus mona). Mol Biol Evol 2021; 38:876-890. [PMID: 32986826 PMCID: PMC7947840 DOI: 10.1093/molbev/msaa248] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Guenons (tribe Cercopithecini) are the most widely distributed nonhuman primate in the tropical forest belt of Africa and show considerable phenotypic, taxonomic, and ecological diversity. However, genomic information for most species within this group is still lacking. Here, we present a high-quality de novo genome (total 2.90 Gb, contig N50 equal to 22.7 Mb) of the mona monkey (Cercopithecus mona), together with genome resequencing data of 13 individuals sampled across Nigeria. Our results showed differentiation between populations from East and West of the Niger River ∼84 ka and potential ancient introgression in the East population from other mona group species. The PTPRK, FRAS1, BNC2, and EDN3 genes related to pigmentation displayed signals of introgression in the East population. Genomic scans suggest that immunity genes such as AKT3 and IL13 (possibly involved in simian immunodeficiency virus defense), and G6PD, a gene involved in malaria resistance, are under positive natural selection. Our study gives insights into differentiation, natural selection, and introgression in guenons.
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Affiliation(s)
- Adeola Oluwakemi Ayoola
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
- Kunming College of Life Science, University of the Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Bao-Lin Zhang
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Richard P Meisel
- Department of Biology and Biochemistry, University of Houston, Houston, TX
| | - Lotanna M Nneji
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
- Sino-Africa Joint Research Center, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Yong Shao
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Olanrewaju B Morenikeji
- Department of Biomedical Sciences, Rochester Institute of Technology, Rochester, NY
- Department of Biology, Hamilton College, Clinton, NY
| | - Adeniyi C Adeola
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
- Sino-Africa Joint Research Center, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Said I Ng’ang’a
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
- Kunming College of Life Science, University of the Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Babafemi G Ogunjemite
- Department of Ecotourism and Wildlife Management, Federal University of Technology, Akure, Nigeria
| | - Agboola O Okeyoyin
- National Park Service Headquarters, Federal Capital Territory, Abuja, Nigeria
| | - Christian Roos
- Gene Bank of Primates and Primate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Göttingen, Germany
| | - Dong-Dong Wu
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
- National Resource Center for Non-Human Primates, Kunming Primate Research Center, and National Research Facility for Phenotypic & Genetic Analysis of Model Animals (Primate Facility), Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China
- Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China
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15
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Lu A, Sirimanna DGR, Wijayathunga L, Vandercone R, Salmi R. Mixed-species associations and attempted mating suggest hybridization between purple-faced and tufted gray langurs of Sri Lanka. Primates 2020; 62:11-17. [PMID: 32804328 PMCID: PMC7430210 DOI: 10.1007/s10329-020-00852-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 07/23/2020] [Indexed: 11/27/2022]
Abstract
Hybridization is increasingly recognized as an important mechanism of evolutionary change in the order Primates. Here, we present the first observational data supporting natural hybridization between the critically endangered purple-faced langur (Semnopithecus vetulus philbricki) and the threatened tufted gray langur (Semnopithecus priam thersites) in Kaludiyapokuna Forest Reserve in Sri Lanka. In one case study, we observed a long-term (> 1 year) mixed-species group consisting of one adult tufted gray langur male coexisting with seven adult purple-faced females. Although copulations were not observed, two infants were conceived during the male’s tenure, and the coat color of one of these infants transitioned into that intermediate between those of the two langur species. The tufted gray langur male was also aggressive toward extra-group males of both species, as well as towards purple-faced juveniles within his group. However, we never witnessed the male exhibiting aggression towards the infants conceived during his tenure. In a second case study, a female purple-faced langur visited and sexually solicited a tufted gray langur male in a known study group of this species over the course of 2 days, in what resembled a sexual consortship. Taken together, the observed mixed-species association and attempted interspecific mating suggest that hybridization is very likely in these sympatric species. Genetic data are needed to confirm and determine the extent of hybridization in the dry zone of Sri Lanka where purple-faced langurs live in sympatry with tufted gray langurs.
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Affiliation(s)
- Amy Lu
- Department of Anthropology, Stony Brook University, Stony Brook, NY, 11794-4364, USA.
- Interdepartmental Doctoral Program in Anthropological Sciences, Stony Brook University, Stony Brook, NY, USA.
- Kaludiyapokuna Primate Conservation and Research Project, Dambulla, Sri Lanka.
| | | | | | - Rajnish Vandercone
- Kaludiyapokuna Primate Conservation and Research Project, Dambulla, Sri Lanka
- Department of Biological Sciences, Rajarata University, Anuradhapura, Sri Lanka
| | - Roberta Salmi
- Kaludiyapokuna Primate Conservation and Research Project, Dambulla, Sri Lanka
- Department of Anthropology, University of Georgia, Athens, GA, USA
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16
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Species assignment in forensics and the challenge of hybrids. Forensic Sci Int Genet 2020; 48:102333. [PMID: 32615399 DOI: 10.1016/j.fsigen.2020.102333] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 06/01/2020] [Accepted: 06/04/2020] [Indexed: 01/04/2023]
Abstract
Forensic identification of species is in growing demand, particularly from law enforcement authorities in the areas of wildlife, fisheries and hunting as well as food authentication. Within the non-human forensic genetics expanding applications' field, the major current difficulties result from the lack of standards and genetic databases as well as the poor or absent taxonomic definition of several groups. Here we focus on a forensically important and overlooked problem in species identification: the exclusive use of uniparental markers, a common practice in current genetic barcoding methodologies, may lead to incorrect or impossible assignment whenever hybrids can occur (frequently, not only in domesticates, but also in the wild). For example, if one of these cases involves a mammal, and mitochondrial DNA alone is used (which in instances may be the only type of DNA sequence available in databases), the sample will be wrongfully assigned to the female parental species, completely missing the detection of a possible hybrid animal. The importance of this issue in the forensic contributions to food authentication, wildlife and conservation genetics is analyzed. We present a cautionary guidance on the forensic reporting of results avoiding this error.
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17
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Admixture in Mammals and How to Understand Its Functional Implications. Bioessays 2019; 41:e1900123. [DOI: 10.1002/bies.201900123] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 10/03/2019] [Indexed: 12/13/2022]
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Moraes AM, Vancine MH, Moraes AM, de Oliveira Cordeiro CL, Pinto MP, Lima AA, Culot L, Silva TSF, Collevatti RG, Ribeiro MC, Sobral-Souza T. Predicting the potential hybridization zones between native and invasive marmosets within Neotropical biodiversity hotspots. Glob Ecol Conserv 2019. [DOI: 10.1016/j.gecco.2019.e00706] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
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Ackermann RR, Arnold ML, Baiz MD, Cahill JA, Cortés-Ortiz L, Evans BJ, Grant BR, Grant PR, Hallgrimsson B, Humphreys RA, Jolly CJ, Malukiewicz J, Percival CJ, Ritzman TB, Roos C, Roseman CC, Schroeder L, Smith FH, Warren KA, Wayne RK, Zinner D. Hybridization in human evolution: Insights from other organisms. Evol Anthropol 2019; 28:189-209. [PMID: 31222847 PMCID: PMC6980311 DOI: 10.1002/evan.21787] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Revised: 01/30/2019] [Accepted: 04/30/2019] [Indexed: 12/14/2022]
Abstract
During the late Pleistocene, isolated lineages of hominins exchanged genes thus influencing genomic variation in humans in both the past and present. However, the dynamics of this genetic exchange and associated phenotypic consequences through time remain poorly understood. Gene exchange across divergent lineages can result in myriad outcomes arising from these dynamics and the environmental conditions under which it occurs. Here we draw from our collective research across various organisms, illustrating some of the ways in which gene exchange can structure genomic/phenotypic diversity within/among species. We present a range of examples relevant to questions about the evolution of hominins. These examples are not meant to be exhaustive, but rather illustrative of the diverse evolutionary causes/consequences of hybridization, highlighting potential drivers of human evolution in the context of hybridization including: influences on adaptive evolution, climate change, developmental systems, sex-differences in behavior, Haldane's rule and the large X-effect, and transgressive phenotypic variation.
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Affiliation(s)
- Rebecca R. Ackermann
- Department of Archaeology, University of Cape Town, Rondebosch, South Africa
- Human Evolution Research Institute, University of Cape Town, Rondebosch, South Africa
| | | | - Marcella D. Baiz
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan
| | - James A. Cahill
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California
| | - Liliana Cortés-Ortiz
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan
| | - Ben J. Evans
- Biology Department, Life Sciences Building, McMaster University, Hamilton, Canada
| | - B. Rosemary Grant
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey
| | - Peter R. Grant
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey
| | - Benedikt Hallgrimsson
- Department of Cell Biology and Anatomy and the Alberta Children’s Hospital Research Institute, University of Calgary, Calgary, Canada
| | - Robyn A. Humphreys
- Department of Archaeology, University of Cape Town, Rondebosch, South Africa
- Human Evolution Research Institute, University of Cape Town, Rondebosch, South Africa
| | - Clifford J. Jolly
- Center for the Study of Human Origins, Department of Anthropology, New York University, and NYCEP, New York, New York
| | - Joanna Malukiewicz
- Biodesign Institute, Arizona State University, Tempe, Arizona
- Federal University of Vicosa, Department of Animal Biology, Brazil
| | - Christopher J. Percival
- Department of Cell Biology and Anatomy and the Alberta Children’s Hospital Research Institute, University of Calgary, Calgary, Canada
- Department of Anthropology, Stony Brook University, New York
| | - Terrence B. Ritzman
- Department of Archaeology, University of Cape Town, Rondebosch, South Africa
- Human Evolution Research Institute, University of Cape Town, Rondebosch, South Africa
- Department of Neuroscience, Washington University School of Medicine, St. Louis, Missouri
- Department of Anthropology, Washington University, St. Louis, Missouri
| | - Christian Roos
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Göttingen, Germany
| | - Charles C. Roseman
- Department of Animal Biology, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois
| | - Lauren Schroeder
- Human Evolution Research Institute, University of Cape Town, Rondebosch, South Africa
- Department of Anthropology, University of Toronto Mississauga, Mississauga, Canada
| | - Fred H. Smith
- Department of Sociology and Anthropology, Illinois State University, Normal, Illinois
| | - Kerryn A. Warren
- Department of Archaeology, University of Cape Town, Rondebosch, South Africa
- Human Evolution Research Institute, University of Cape Town, Rondebosch, South Africa
| | | | - Dietmar Zinner
- Cognitive Ethology Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Göttingen, Germany
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Cortés-Ortiz L, Roos C, Zinner D. Introduction to Special Issue on Primate Hybridization and Hybrid Zones. INT J PRIMATOL 2019. [DOI: 10.1007/s10764-019-00076-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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