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Li XM, Chen X, Zhao DG. Overexpression of the Eucommia ulmoides chitinase EuCHIT73.88 gene improves tobacco disease resistance. Gene 2024:148619. [PMID: 38821325 DOI: 10.1016/j.gene.2024.148619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/17/2024] [Accepted: 05/28/2024] [Indexed: 06/02/2024]
Abstract
Black shank disease is the main disease affecting tobacco crops worldwide, and the main impacted by the disease are the stem base and root. At present, transgenic technology is an effective method to improve plant disease resistance through transgenic technology. In this study, the EuCHIT73.88 gene was cloned from Eucommia ulmoides Oliver (E. ulmoides) by using RT-PCR. The full length of the gene was 897 bp, encoding 298 amino acid residues. An overexpression vector of from the EuCHIT73.88 gene driven by the 35S promoter was constructed and transferred into tobacco plants via transgenic technology. After inoculation with the black shank pathogen, the number of visible lesions on the stems and leaves of the transgenic tobacco variety EuCHIT73.88 was significantly shorter than that on the stems and leaves of the of wild type (WT) and empty vector (EV) plants, and the lesion area was significantly smaller than on the stems and leaves of the WT and EV plants. With increasing inoculation time, introduction of the WT and EV vectors was obviously lethal, whereas transgenic tobacco only exhibited wilted characteristics, and the stems were black, which indicated that the EuCHIT73.88 gene could improve the resistance of tobacco to black shank disease. Furthermore, the activity of protective enzymes and the gene expression of resistance-related proteins were measured. The results showed that compared with those of the WT and EV plants, the CAT and POD activities of the TP tobacco plants were greater, peaking at 72 h at concentrations of 446.87 U/g and 4562.24 U/g, which were 1.63 and 1.61 times greater than those of the WT and EV plants, respectively. This indicated that CAT and POD may be involved in the process of disease resistance of in the transgenic plants. The MDA content of the transgenic tobacco plants was significantly lower than that of the WT and EV plants with increasing EuCHIT73.88 expression, thus indicating that the overexpression of the transgenic EuCHIT73.88 gene could alleviate the levels of lipid peroxidation and reduce the damage to plant cell membranes. The expression of disease-related protein genes (PR2, PR5, PR1a, PDF1.2 and MLP423) was significantly greater in the EuCHIT73.88 ransgenic tobacco than in the WT and EV-transgenic tobacco. and these findings consistently showed that EuCHIT73.88 could improve the resistance to black shank.
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Affiliation(s)
- Xiao-Man Li
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, College of Life Sciences/Institute of Agro-bioengineering, Guiyang 550025, China
| | - Xi Chen
- Plant Conservation Technology Center, Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China
| | - De-Gang Zhao
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, College of Life Sciences/Institute of Agro-bioengineering, Guiyang 550025, China; Plant Conservation Technology Center, Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China.
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2
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Liu X, Cao X, Chen M, Li D, Zhang Z. Two transcription factors, RhERF005 and RhCCCH12, regulate rose resistance to Botrytis cinerea by modulating cytokinin levels. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:2584-2597. [PMID: 38314882 DOI: 10.1093/jxb/erae040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 01/31/2024] [Indexed: 02/07/2024]
Abstract
Gray mold caused by the necrotrophic fungal pathogen Botrytis cinerea is one of the most destructive diseases in rose (Rosa spp.). Rose infection by B. cinerea leads to severe economic losses due to necrosis, tissue collapse, and rot. In rose, cytokinins (CKs) positively regulate a defense response to B. cinerea, but little is known about the underlying molecular mechanisms. Here, we characterized two ethylene/jasmonic acid-regulated transcription factors, RhEFR005 and RhCCCH12, that bind to the promoter region of PATHOGENESIS-RELATED 10.1 (RhPR10.1) and promote its transcription, leading to decreased susceptibility to B. cinerea. The RhEFR005/RhCCCH12-RhPR10.1 module regulated cytokinin content in rose, and the susceptibility of RhEFR005-, RhCCCH12-, and RhPR10.1-silenced rose petals can be rescued by exogenous CK. In summary, our results reveal that the RhERF005/RhCCCH12-RhPR10.1 module regulates the CK-induced defense response of rose to B. cinerea.
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Affiliation(s)
- Xintong Liu
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
| | - Xiaoqian Cao
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
| | - Meng Chen
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
| | - Dandan Li
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
| | - Zhao Zhang
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
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3
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Wang D, Chen L, Liu C, Wang H, Liu Z, Ji X, He N, Xin Y. Mno-miR164a and MnNAC100 regulate the resistance of mulberry to Botrytis cinerea. PHYSIOLOGIA PLANTARUM 2024; 176:e14309. [PMID: 38659152 DOI: 10.1111/ppl.14309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/01/2024] [Accepted: 04/05/2024] [Indexed: 04/26/2024]
Abstract
Although microRNAs (miRNAs) regulate the defense response of a variety of plant species against a variety of pathogenic fungi, the involvement of miRNAs in mulberry's defense against Botrytis cinerea has not yet been documented. In this study, we identified responsive B. cinerea miRNA mno-miR164a in mulberry trees. After infection with B. cinerea, the expression of mno-miR164a was reduced, which was fully correlated with the upregulation of its target gene, MnNAC100, responsible for encoding a transcription factor. By using transient infiltration/VIGS mulberry that overexpressed mno-miR164a or knocked-down MnNAC100, our study revealed a substantial enhancement in mulberry's resistance to B. cinerea when mno-miR164a was overexpressed or MnNAC100 expression was suppressed. This enhancement was accompanied by increased catalase (CAT) activity and reduced malondialdehyde (MDA) content. In addition, mno-miR164a-mediated inhibition of MnNAC100 enhanced the expression of a cluster of defense-related genes in transgenic plants upon exposure to B. cinerea. Meanwhile, MnNAC100 acts as a transcriptional repressor, directly suppressing the expression of MnPDF1.2. Our study indicated that the mno-miR164a-MnNAC100 regulatory module manipulates the defense response of mulberry to B. cinerea infection. This discovery has great potential in breeding of resistant varieties and disease control.
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Affiliation(s)
- Donghao Wang
- College of Forestry, Shandong Agricultural University, Tai'an, China
| | - Lin Chen
- State Key Laboratory of Resource Insects, Southwest University, Chongqing, China
| | - Chaorui Liu
- College of Forestry, Shandong Agricultural University, Tai'an, China
| | - Hairui Wang
- College of Forestry, Shandong Agricultural University, Tai'an, China
| | - Zixuan Liu
- College of Forestry, Shandong Agricultural University, Tai'an, China
| | - Xianling Ji
- College of Forestry, Shandong Agricultural University, Tai'an, China
| | - Ningjia He
- State Key Laboratory of Resource Insects, Southwest University, Chongqing, China
| | - Youchao Xin
- College of Forestry, Shandong Agricultural University, Tai'an, China
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4
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Lu C, Liu X, Tang Y, Fu Y, Zhang J, Yang L, Li P, Zhu Z, Dong P. A comprehensive review of TGA transcription factors in plant growth, stress responses, and beyond. Int J Biol Macromol 2024; 258:128880. [PMID: 38141713 DOI: 10.1016/j.ijbiomac.2023.128880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2023] [Revised: 11/17/2023] [Accepted: 12/17/2023] [Indexed: 12/25/2023]
Abstract
TGA transcription factors (TFs), belonging to the D clade of the basic region leucine zipper (bZIP) family, exhibit a specific ability to recognize and bind to regulatory elements with TGACG as the core recognition sequence, enabling the regulation of target gene expression and participation in various biological regulatory processes. In plant growth and development, TGA TFs influence organ traits and phenotypes, including initial root length and flowering time. They also play a vital role in responding to abiotic stresses like salt, drought, and cadmium exposure. Additionally, TGA TFs are involved in defending against potential biological stresses, such as fungal bacterial diseases and nematodes. Notably, TGA TFs are sensitive to the oxidative-reductive state within plants and participate in pathways that aid in the elimination of reactive oxygen species (ROS) generated during stressful conditions. TGA TFs also participate in multiple phytohormonal signaling pathways (ABA, SA, etc.). This review thoroughly examines the roles of TGA TFs in plant growth, development, and stress response. It also provides detailed insights into the mechanisms underlying their involvement in physiological and pathological processes, and their participation in plant hormone signaling. This multifaceted exploration distinguishes this review from others, offering a comprehensive understanding of TGA TFs.
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Affiliation(s)
- Chenfei Lu
- School of Life Sciences, Chongqing University, Chongqing 401331, China; College of Bioengineering, Chongqing University, Chongqing 400030, China
| | - Xingyu Liu
- School of Life Sciences, Chongqing University, Chongqing 401331, China
| | - Yuqin Tang
- College of Bioengineering, Chongqing University, Chongqing 400030, China
| | - Yingqi Fu
- School of Life Sciences, Chongqing University, Chongqing 401331, China
| | - Jiaomei Zhang
- School of Life Sciences, Chongqing University, Chongqing 401331, China
| | - Liting Yang
- School of Life Sciences, Chongqing University, Chongqing 401331, China
| | - Peihua Li
- College of Agronomy, Xichang University, Xichang, Sichuan 615013, China
| | - Zhenglin Zhu
- School of Life Sciences, Chongqing University, Chongqing 401331, China.
| | - Pan Dong
- School of Life Sciences, Chongqing University, Chongqing 401331, China; Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing 400716, China.
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Ma N, Sun P, Li ZY, Zhang FJ, Wang XF, You CX, Zhang CL, Zhang Z. Plant disease resistance outputs regulated by AP2/ERF transcription factor family. STRESS BIOLOGY 2024; 4:2. [PMID: 38163824 PMCID: PMC10758382 DOI: 10.1007/s44154-023-00140-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 11/21/2023] [Indexed: 01/03/2024]
Abstract
Plants have evolved a complex and elaborate signaling network to respond appropriately to the pathogen invasion by regulating expression of defensive genes through certain transcription factors. The APETALA2/ethylene response factor (AP2/ERF) family members have been determined as key regulators in growth, development, and stress responses in plants. Moreover, a growing body of evidence has demonstrated the critical roles of AP2/ERFs in plant disease resistance. In this review, we describe recent advances for the function of AP2/ERFs in defense responses against microbial pathogens. We summarize that AP2/ERFs are involved in plant disease resistance by acting downstream of mitogen activated protein kinase (MAPK) cascades, and regulating expression of genes associated with hormonal signaling pathways, biosynthesis of secondary metabolites, and formation of physical barriers in an MAPK-dependent or -independent manner. The present review provides a multidimensional perspective on the functions of AP2/ERFs in plant disease resistance, which will facilitate the understanding and future investigation on the roles of AP2/ERFs in plant immunity.
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Affiliation(s)
- Ning Ma
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China
| | - Ping Sun
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China
| | - Zhao-Yang Li
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China
| | - Fu-Jun Zhang
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China
- Department of Horticulture, College of Agriculture, Shihezi University, Shihezi, 832003, Xinjiang, China
| | - Xiao-Fei Wang
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China
| | - Chun-Xiang You
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China
| | - Chun-Ling Zhang
- College of Agricultural Science and Technology, Shandong Agriculture and Engineering University, Jinan, 250100, Shandong, China.
| | - Zhenlu Zhang
- College of Horticulture Science and Engineering, Apple Technology Innovation Center of Shandong Province, National Key Laboratory of Wheat Improvement, Shandong Agricultural University, Tai'an, 271000, Shandong, China.
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6
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Xie W, Cao W, Lu S, Zhao J, Shi X, Yue X, Wang G, Feng Z, Hu K, Chen Z, Zuo S. Knockout of transcription factor OsERF65 enhances ROS scavenging ability and confers resistance to rice sheath blight. MOLECULAR PLANT PATHOLOGY 2023; 24:1535-1551. [PMID: 37776021 PMCID: PMC10632786 DOI: 10.1111/mpp.13391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 09/07/2023] [Accepted: 09/09/2023] [Indexed: 10/01/2023]
Abstract
Rice sheath blight (ShB) is a devastating disease that severely threatens rice production worldwide. Induction of cell death represents a key step during infection by the ShB pathogen Rhizoctonia solani. Nonetheless, the underlying mechanisms remain largely unclear. In the present study, we identified a rice transcription factor, OsERF65, that negatively regulates resistance to ShB by suppressing cell death. OsERF65 was significantly upregulated by R. solani infection in susceptible cultivar Lemont and was highly expressed in the leaf sheath. Overexpression of OsERF65 (OsERF65OE) decreased rice resistance, while the knockout mutant (oserf65) exhibited significantly increased resistance against ShB. The transcriptome assay revealed that OsERF65 repressed the expression of peroxidase genes after R. solani infection. The antioxidative enzyme activity was significantly increased in oserf65 plants but reduced in OsERF65OE plants. Consistently, hydrogen peroxide content was apparently reduced in oserf65 plants but accumulated in OsERF65OE plants. OsERF65 directly bound to the GCC box in the promoter regions of four peroxidase genes and suppressed their transcription, reducing the ability to scavenge reactive oxygen species (ROS). The oserf65 mutant exhibited a slight decrease in plant height but increased grain yield. Overall, our results revealed an undocumented role of OsERF65 that acts as a crucial regulator of rice resistance to R. solani and a potential target for improving both ShB resistance and rice yield.
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Affiliation(s)
- Wenya Xie
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
- Co‐Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province/Key Laboratory of Crop Genetics and Physiology of Jiangsu ProvinceYangzhou UniversityYangzhouChina
| | - Wenlei Cao
- College of Tourism and Cuisine, Yangzhou UniversityYangzhouChina
| | - Shuaibing Lu
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
| | - Jianhua Zhao
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
| | - Xiaopin Shi
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
| | - Xuanyu Yue
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
| | - Guangda Wang
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
| | - Zhiming Feng
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
- Co‐Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province/Key Laboratory of Crop Genetics and Physiology of Jiangsu ProvinceYangzhou UniversityYangzhouChina
| | - Keming Hu
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
- Co‐Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province/Key Laboratory of Crop Genetics and Physiology of Jiangsu ProvinceYangzhou UniversityYangzhouChina
| | - Zongxiang Chen
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
- Co‐Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province/Key Laboratory of Crop Genetics and Physiology of Jiangsu ProvinceYangzhou UniversityYangzhouChina
| | - Shimin Zuo
- Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular BreedingAgricultural College of Yangzhou UniversityYangzhouChina
- Co‐Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province/Key Laboratory of Crop Genetics and Physiology of Jiangsu ProvinceYangzhou UniversityYangzhouChina
- Joint International Research Laboratory of Agriculture and Agri‐Product Safety, the Ministry of Education of ChinaInstitutes of Agricultural Science and Technology Development, Yangzhou UniversityYangzhouChina
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Han F, Yuan K, Sun W, Zhang X, Liu X, Zhao X, Yang L, Wang Y, Ji J, Liu Y, Li Z, Zhang J, Zhang C, Huang S, Zhang Y, Fang Z, Lv H. A natural mutation in the promoter of Ms-cd1 causes dominant male sterility in Brassica oleracea. Nat Commun 2023; 14:6212. [PMID: 37798291 PMCID: PMC10556095 DOI: 10.1038/s41467-023-41916-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Accepted: 09/24/2023] [Indexed: 10/07/2023] Open
Abstract
Male sterility has been used for crop hybrid breeding for a long time. It has contributed greatly to crop yield increase. However, the genetic basis of male sterility has not been fully elucidated. Here, we report map-based cloning of the cabbage (Brassica oleracea) dominant male-sterile gene Ms-cd1 and reveal that it encodes a PHD-finger motif transcription factor. A natural allele Ms-cd1PΔ-597, resulting from a 1-bp deletion in the promoter, confers dominant genic male sterility (DGMS), whereas loss-of-function ms-cd1 mutant shows recessive male sterility. We also show that the ethylene response factor BoERF1L represses the expression of Ms-cd1 by directly binding to its promoter; however, the 1-bp deletion in Ms-cd1PΔ-597 affects the binding. Furthermore, ectopic expression of Ms-cd1PΔ-597 confers DGMS in both dicotyledonous and monocotyledonous plant species. We thus propose that the DGMS system could be useful for breeding hybrids of multiple crop species.
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Affiliation(s)
- Fengqing Han
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Kaiwen Yuan
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Wenru Sun
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- Key Laboratory for Vegetable Biology of Hunan Province, Engineering Research Center for Horticultural Crop Germplasm Creation and New Variety Breeding, Ministry of Education, Hunan Agricultural University, Changsha, 410128, China
| | - Xiaoli Zhang
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, 300192, Tianjin, China
| | - Xing Liu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xinyu Zhao
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Limei Yang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yong Wang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jialei Ji
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yumei Liu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Zhansheng Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jinzhe Zhang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Chunzhi Zhang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China
| | - Sanwen Huang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China
- Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China
| | - Yangyong Zhang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Zhiyuan Fang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Honghao Lv
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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Johnson LY, Major IT, Chen Y, Yang C, Vanegas-Cano LJ, Howe GA. Diversification of JAZ-MYC signaling function in immune metabolism. THE NEW PHYTOLOGIST 2023; 239:2277-2291. [PMID: 37403524 PMCID: PMC10528271 DOI: 10.1111/nph.19114] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 06/11/2023] [Indexed: 07/06/2023]
Abstract
Jasmonate (JA) re-programs metabolism to confer resistance to diverse environmental threats. Jasmonate stimulates the degradation of JASMONATE ZIM-DOMAIN (JAZ) proteins that repress the activity of MYC transcription factors. In Arabidopsis thaliana, MYC and JAZ are encoded by 4 and 13 genes, respectively. The extent to which expansion of the MYC and JAZ families has contributed to functional diversification of JA responses is not well understood. Here, we investigated the role of MYC and JAZ paralogs in controlling the production of defense compounds derived from aromatic amino acids (AAAs). Analysis of loss-of-function and dominant myc mutations identified MYC3 and MYC4 as the major regulators of JA-induced tryptophan metabolism. We developed a JAZ family-based, forward genetics approach to screen randomized jaz polymutants for allelic combinations that enhance tryptophan biosynthetic capacity. We found that mutants defective in all members (JAZ1/2/5/6) of JAZ group I over-accumulate AAA-derived defense compounds, constitutively express marker genes for the JA-ethylene branch of immunity and are more resistant to necrotrophic pathogens but not insect herbivores. In defining JAZ and MYC paralogs that regulate the production of amino-acid-derived defense compounds, our results provide insight into the specificity of JA signaling in immunity.
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Affiliation(s)
- Leah Y.D. Johnson
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Cell and Molecular Biology Program, Michigan State University, East Lansing, MI 48824, USA
- Molecular Plant Sciences Program, Michigan State University, East Lansing, MI 48824, USA
| | - Ian T. Major
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
| | - Yani Chen
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
| | - Changxian Yang
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
| | - Leidy J. Vanegas-Cano
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Gregg A. Howe
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Cell and Molecular Biology Program, Michigan State University, East Lansing, MI 48824, USA
- Molecular Plant Sciences Program, Michigan State University, East Lansing, MI 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA
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9
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Jiang Y, Zhang S, Chen K, Xia X, Tao B, Kong W. Impacts of DNA methylases and demethylases on the methylation and expression of Arabidopsis ethylene signal pathway genes. Funct Integr Genomics 2023; 23:143. [PMID: 37127698 DOI: 10.1007/s10142-023-01069-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Revised: 04/21/2023] [Accepted: 04/24/2023] [Indexed: 05/03/2023]
Abstract
Arabidopsis ethylene (ET) signal pathway plays important roles in various aspects. Cytosine DNA methylation is significant in controlling gene expression in plants. Here, we analyzed the bisulfite sequencing and mRNA sequencing data from Arabidopsis (de)methylase mutants met1, cmt3, drm1/2, ddm1, ros1-4, and rdd to investigate how DNA (de)methylases influence the DNA methylation and expression of Arabidopsis ET pathway genes. At least 32 genes are found to involved in Arabidopsis ET pathway by text mining. Among them, 14 genes are unmethylated or methylated with very low levels. ACS6 and ACS9 are conspicuously methylated within their upstream regions. The other 16 genes are predominantly methylated at the CG sites within gene body regions in wild-type plants, and mutation of MET1 resulted in almost entire elimination of the CG methylations. In addition, CG methylations within some genes are jointly maintained by MET1 and other (de)methylases. Analyses of mRNA-seq data indicated that some ET pathway genes were differentially expressed between wild-type and diverse mutants. PDF1.2, the marker gene of ET signal pathway, was found being regulated indirectly by the methylases. Eighty-two transposable elements (TEs) were identified to be associated to 15 ET pathway genes. ACS11 is found located in a heterochromatin region that contains 57 TEs, indicating its specific expression and regulation. Together, our results suggest that DNA (de)methylases are implicated in the regulation of CG methylation within gene body regions and transcriptional activity of some ET pathway genes and that maintenance of normal CG methylation is essential for ET pathway in Arabidopsis.
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Affiliation(s)
- Yan Jiang
- School of Plant Protection, Yangzhou University, Yangzhou, 225009, Jiangsu, China
| | - Shengwei Zhang
- School of Plant Protection, Yangzhou University, Yangzhou, 225009, Jiangsu, China
| | - Kun Chen
- School of Plant Protection, Yangzhou University, Yangzhou, 225009, Jiangsu, China
| | - Xue Xia
- School of Plant Protection, Yangzhou University, Yangzhou, 225009, Jiangsu, China
| | - Bingqing Tao
- School of Plant Protection, Yangzhou University, Yangzhou, 225009, Jiangsu, China
| | - Weiwen Kong
- School of Plant Protection, Yangzhou University, Yangzhou, 225009, Jiangsu, China.
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, Jiangsu, China.
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Macioszek VK, Jęcz T, Ciereszko I, Kononowicz AK. Jasmonic Acid as a Mediator in Plant Response to Necrotrophic Fungi. Cells 2023; 12:cells12071027. [PMID: 37048100 PMCID: PMC10093439 DOI: 10.3390/cells12071027] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 03/22/2023] [Accepted: 03/24/2023] [Indexed: 03/30/2023] Open
Abstract
Jasmonic acid (JA) and its derivatives, all named jasmonates, are the simplest phytohormones which regulate multifarious plant physiological processes including development, growth and defense responses to various abiotic and biotic stress factors. Moreover, jasmonate plays an important mediator’s role during plant interactions with necrotrophic oomycetes and fungi. Over the last 20 years of research on physiology and genetics of plant JA-dependent responses to pathogens and herbivorous insects, beginning from the discovery of the JA co-receptor CORONATINE INSENSITIVE1 (COI1), research has speeded up in gathering new knowledge on the complexity of plant innate immunity signaling. It has been observed that biosynthesis and accumulation of jasmonates are induced specifically in plants resistant to necrotrophic fungi (and also hemibiotrophs) such as mostly investigated model ones, i.e., Botrytis cinerea, Alternaria brassicicola or Sclerotinia sclerotiorum. However, it has to be emphasized that the activation of JA-dependent responses takes place also during susceptible interactions of plants with necrotrophic fungi. Nevertheless, many steps of JA function and signaling in plant resistance and susceptibility to necrotrophs still remain obscure. The purpose of this review is to highlight and summarize the main findings on selected steps of JA biosynthesis, perception and regulation in the context of plant defense responses to necrotrophic fungal pathogens.
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11
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Yadav M, Divyanshu K, Dubey MK, Rai A, Kumar S, Tripathi YN, Shukla V, Upadhyay RS. Plant growth promotion and differential expression of defense genes in chilli pepper against Colletotrichum truncatum induced by Trichoderma asperellum and T. harzianum. BMC Microbiol 2023; 23:54. [PMID: 36864373 PMCID: PMC9983198 DOI: 10.1186/s12866-023-02789-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 02/08/2023] [Indexed: 03/04/2023] Open
Abstract
BACKGROUND Trichoderma asperellum and T. harzianum were assessed in this study as a potential biological control against Colletotrichum truncatum. C. truncatum is a hemibiotrophic fungus that causes anthracnose disease in chilli thereby affecting plant growth and fruit yield. Scanning electron microscope (SEM) technique showed the beneficial interaction between chilli root-Trichoderma spp. inducing the plant growth promotion, mechanical barrier, and defense network under C. truncatum challenged conditions. METHODS Seeds bio-primed with T. asperellum, T. harzianum, and T. asperellum + T. harzianum promoted the plant growth parameters and strengthening of physical barrier via lignification on the wall of vascular tissues. Seed primed with bioagents were used for exploring the molecular mechanism of defense response in pepper against anthracnose to assess the temporal expression of six defense genes in the Surajmukhi variety of Capsicum annuum. QRT-PCR demonstrated induction of defense responsive genes in chilli pepper bioprimed with Trichoderma spp. such as plant defensin 1.2 (CaPDF1.2), superoxide dismutase (SOD), ascorbate peroxidase (APx), guaiacol peroxidase (GPx), pathogenesis related proteins PR-2 and PR-5. RESULTS The results showed that bioprimed seeds were assessed for T. asperellum, T. harzianum, and T. asperellum + T. harzianum-chilli root colonization interaction under in vivo conditions. The results of the scanning electron microscope revealed that T. asperellum, T. harzianum and T. asperellum + T. harzianum interact with chilli roots directly via the development of plant-Trichoderma interaction system. Seeds bio-primed with bioagents promoted the plant growth parameters, fresh and dry weight of shoot and root, plant height, leaf area index, number of leaves, stem diameter and strengthening of physical barrier via lignification on the wall of vascular tissues and expression of six defense related genes in pepper against anthracnose. CONCLUSIONS Application of T. asperellum and T. harzianum and in combination of treatments enhanced the plant growth. Further, as seeds bioprimed with T. asperellum, T. harzianum and in combination with treatment of T. asperellum + T. harzianum induced the strengthening of the cell wall by lignification and expression of six defense related genes CaPDF1.2, SOD, APx, GPx, PR-2 and PR-5 in pepper against C. truncatum. Our study contributed for better disease management through biopriming with T. asperellum, T. harzianum and T. asperellum + T. harzianum. The biopriming possess enormous potential to promote plant growth, modulate the physical barrier, and induced the defense related genes in chilli pepper against anthracnose.
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Affiliation(s)
- Mukesh Yadav
- Laboratory of Mycopathology and Microbial Technology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India. .,Kutir Post Graduate College Chakkey, Jaunpur, 222146, Uttar Pradesh, India.
| | - Kumari Divyanshu
- Laboratory of Mycopathology and Microbial Technology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Manish Kumar Dubey
- Department of Biosciences, School of Basic & Applied Sciences, Galgotias University, Greater Noida, 203201, Uttar Pradesh, India
| | - Ashutosh Rai
- Department of Biochemistry, College of Horticulture, Banda University of Agriculture and Technology, Banda, 210001, Uttar Pradesh, India
| | - Sunil Kumar
- Laboratory of Mycopathology and Microbial Technology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Yashoda Nandan Tripathi
- Laboratory of Mycopathology and Microbial Technology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Vaishali Shukla
- Laboratory of Mycopathology and Microbial Technology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India.,Government Post Graduate College, Obra, Sonbhadra, Uttar Pradesh, 231219, India
| | - Ram Sanmukh Upadhyay
- Laboratory of Mycopathology and Microbial Technology, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
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12
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Kajla M, Roy A, Singh IK, Singh A. Regulation of the regulators: Transcription factors controlling biosynthesis of plant secondary metabolites during biotic stresses and their regulation by miRNAs. FRONTIERS IN PLANT SCIENCE 2023; 14:1126567. [PMID: 36938003 PMCID: PMC10017880 DOI: 10.3389/fpls.2023.1126567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
Biotic stresses threaten to destabilize global food security and cause major losses to crop yield worldwide. In response to pest and pathogen attacks, plants trigger many adaptive cellular, morphological, physiological, and metabolic changes. One of the crucial stress-induced adaptive responses is the synthesis and accumulation of plant secondary metabolites (PSMs). PSMs mitigate the adverse effects of stress by maintaining the normal physiological and metabolic functioning of the plants, thereby providing stress tolerance. This differential production of PSMs is tightly orchestrated by master regulatory elements, Transcription factors (TFs) express differentially or undergo transcriptional and translational modifications during stress conditions and influence the production of PSMs. Amongst others, microRNAs, a class of small, non-coding RNA molecules that regulate gene expression post-transcriptionally, also play a vital role in controlling the expression of many such TFs. The present review summarizes the role of stress-inducible TFs in synthesizing and accumulating secondary metabolites and also highlights how miRNAs fine-tune the differential expression of various stress-responsive transcription factors during biotic stress.
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Affiliation(s)
- Mohini Kajla
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
| | - Amit Roy
- Excellent Team for Mitigation (ETM), Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Prague, Czechia
| | - Indrakant K. Singh
- Department of Zoology, Deshbandhu College, University of Delhi, New Delhi, India
| | - Archana Singh
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
- Jagdish Chandra Bose Center for Plant Genomics, Hansraj College, University of Delhi, Delhi, India
- Delhi School of Climate Change and Sustainability, Institution of Eminence, Maharishi Karnad Bhawan, University of Delhi, Delhi, India
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13
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Su K, Zhao W, Lin H, Jiang C, Zhao Y, Guo Y. Candidate gene discovery of Botrytis cinerea resistance in grapevine based on QTL mapping and RNA-seq. FRONTIERS IN PLANT SCIENCE 2023; 14:1127206. [PMID: 36824203 PMCID: PMC9941706 DOI: 10.3389/fpls.2023.1127206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 01/17/2023] [Indexed: 06/18/2023]
Abstract
Grape gray mold disease (Botrytis cinerea) is widespread during grape production especially in Vitis vinifera and causes enormous losses to the grape industry. In nature, the grapevine cultivar 'Beta ' (Vitis riparia × Vitis labrusca) showed high resistance to grape gray mold. Until now, the candidate genes and their mechanism of gray mold resistance were poorly understood. In this study, we firstly conducted quantitative trait locus (QTL) mapping for grape gray mold resistance based on two hybrid offspring populations that showed wide separation in gray mold resistance. Notably, two stable QTL related to gray mold resistance were detected and located on linkage groups LG2 and LG7. The phenotypic variance ranged from 6.86% to 13.70% on LG2 and 4.40% to 11.40% on LG7. Combined with RNA sequencing (RNA-seq), one structural gene VlEDR2 (Vitvi02g00982) and three transcription factors VlERF039 (Vitvi00g00859), VlNAC047 (Vitvi08g01843), and VlWRKY51 (Vitvi07g01847) that may be involved in VlEDR2 expression and grape gray mold resistance were selected. This discovery of candidate gray mold resistance genes will provide an important theoretical reference for grape gray mold resistance mechanisms, research, and gray mold-resistant grape cultivar breeding in the future.
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Affiliation(s)
- Kai Su
- College of Horticulture, Shenyang Agricultural University, Shenyang, China
- College of Horticulture Science and Technology, Hebei Normal University of Science and Technology, Qinhuangdao, China
- Hebei Key Laboratory of Horticultural Germplasm Excavation and Innovative Utilization, Qinhuangdao, China
| | - Wei Zhao
- College of Horticulture, Shenyang Agricultural University, Shenyang, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design and Application Technology (Liaoning), Shenyang, China
| | - Hong Lin
- College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Changyue Jiang
- College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Yuhui Zhao
- College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Yinshan Guo
- College of Horticulture, Shenyang Agricultural University, Shenyang, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design and Application Technology (Liaoning), Shenyang, China
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14
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Huh SU. Functional analysis of hot pepper ethylene responsive factor 1A in plant defense. PLANT SIGNALING & BEHAVIOR 2022; 17:2027137. [PMID: 35192782 PMCID: PMC9176226 DOI: 10.1080/15592324.2022.2027137] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Ethylene-responsive factors play important roles in the biotic and abiotic stresses. Only some ERF genes from Capsicum annuum have been characterized. In the study, the CaERF1A gene is characterized in response to biotic stress. CaERF1A transcripts were induced by various plant defense-related hormone treatments. Knockdown of CaERF1A in hot pepper plants are negatively affected Tobacco mosaic virus-P0-mediated hypersensitive response cell death, resulting in reduced gene expression of pathogenesis-related genes and ethylene and jasmonic acid synthesis-related gene. Overexpressing CaERF1A transgenic plants show enhanced resistance to fungal pathogen via regulating ethylene and jasmonic acid synthesis-related gene expression. Thus, CaERF1A is a positive regulator of plant defense by modulating ethylene and jasmonic acid synthesis-related gene expressions.
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Affiliation(s)
- Sung Un Huh
- Department of Biology, Kunsan National University, Gunsan, Republic of Korea
- CONTACT Sung Un Huh Department of Biology, Kunsan National University, Gunsan54150, Republic of Korea
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15
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Huang LJ, Zhang J, Lin Z, Yu P, Lu M, Li N. The AP2/ERF transcription factor ORA59 regulates ethylene-induced phytoalexin synthesis through modulation of an acyltransferase gene expression. J Cell Physiol 2022. [PMID: 36538653 DOI: 10.1002/jcp.30935] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/07/2022] [Accepted: 12/09/2022] [Indexed: 06/17/2023]
Abstract
The gaseous ethylene (ET) and the oxylipin-derived jasmonic acid (JA) in plants jointly regulate an arsenal of pathogen responsive genes involved in defending against necrotrophic pathogens. The APETALA2 (AP2)/ETHYLENE RESPONSE FACTOR (ERF) transcription factor ORA59 is a major positive regulator of the ET/JA-mediated defense pathway in Arabidopsis thaliana. The Arabidopsis agmatine coumaroyltransferase (AtACT) catalyzes the formation of hydroxycinnamic acid amides (HCAAs) which are effective toxic antimicrobial substances known as phytoalexins and play an important role in plant defense response. However, induction and regulation of AtACT gene expression and HCAAs synthesis in plants remain less understood. Through gene coexpression network analysis, we identified a list of GCC-box cis-element containing genes that were coexpressed with ORA59 under diverse biotic stress conditions and might be potential downstream targets of this AP2/ERF-domain transcription factor. Particularly, ORA59 directly binds to AtACT gene promoter via the GCC-boxes and activates AtACT gene expression. The ET precursor 1-aminocyclopropane-1-carboxylic acid (ACC)-treatment significantly induces AtACT gene expression. Both ORA59 and members of the class II TGA transcription factors are indispensable for ACC-induced AtACT expression. Interestingly, the expression of AtACT is also subject to the signaling crosstalk of the salicylic acid- and ET/JA-mediated defense response pathways. In addition, we found that genes of the phenylpropanoid metabolism pathway were specifically induced by Botrytis cinerea. Taking together, these evidence suggest that the ET/JA signaling pathway activate the expression of AtACT to increase antimicrobial HCAAs production through the transcription factor ORA59 in response to the infection of necrotrophic plant pathogens.
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Affiliation(s)
- Li-Jun Huang
- Laboratory of Forest Genetics and Plant Breeding, College of Forestry, Central South University of Forestry and Technology, Hunan, China
| | - Jiayi Zhang
- Laboratory of Forest Genetics and Plant Breeding, College of Forestry, Central South University of Forestry and Technology, Hunan, China
| | - Zeng Lin
- State Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees, College of Forestry, Central South University of Forestry and Technology, Hunan, China
| | - Peiyao Yu
- State Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees, College of Forestry, Central South University of Forestry and Technology, Hunan, China
| | - Mengzhu Lu
- Laboratory of Forest Genetics and Plant Breeding, College of Forestry, Central South University of Forestry and Technology, Hunan, China
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A and F University, Zhejiang, China
| | - Ning Li
- State Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees, College of Forestry, Central South University of Forestry and Technology, Hunan, China
- Key Laboratory of Forest Bio-resources and Integrated Pest Management for Higher Education in Hunan Province, Central South University of Forestry and Technology, Hunan, China
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16
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Ding LN, Li YT, Wu YZ, Li T, Geng R, Cao J, Zhang W, Tan XL. Plant Disease Resistance-Related Signaling Pathways: Recent Progress and Future Prospects. Int J Mol Sci 2022; 23:ijms232416200. [PMID: 36555841 PMCID: PMC9785534 DOI: 10.3390/ijms232416200] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 12/02/2022] [Accepted: 12/12/2022] [Indexed: 12/23/2022] Open
Abstract
Plant-pathogen interactions induce a signal transmission series that stimulates the plant's host defense system against pathogens and this, in turn, leads to disease resistance responses. Plant innate immunity mainly includes two lines of the defense system, called pathogen-associated molecular pattern-triggered immunity (PTI) and effector-triggered immunity (ETI). There is extensive signal exchange and recognition in the process of triggering the plant immune signaling network. Plant messenger signaling molecules, such as calcium ions, reactive oxygen species, and nitric oxide, and plant hormone signaling molecules, such as salicylic acid, jasmonic acid, and ethylene, play key roles in inducing plant defense responses. In addition, heterotrimeric G proteins, the mitogen-activated protein kinase cascade, and non-coding RNAs (ncRNAs) play important roles in regulating disease resistance and the defense signal transduction network. This paper summarizes the status and progress in plant disease resistance and disease resistance signal transduction pathway research in recent years; discusses the complexities of, and interactions among, defense signal pathways; and forecasts future research prospects to provide new ideas for the prevention and control of plant diseases.
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17
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Wu Y, Li X, Zhang J, Zhao H, Tan S, Xu W, Pan J, Yang F, Pi E. ERF subfamily transcription factors and their function in plant responses to abiotic stresses. FRONTIERS IN PLANT SCIENCE 2022; 13:1042084. [PMID: 36531407 PMCID: PMC9748296 DOI: 10.3389/fpls.2022.1042084] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Accepted: 11/09/2022] [Indexed: 06/09/2023]
Abstract
Ethylene Responsive Factor (ERF) subfamily comprise the largest number of proteins in the plant AP2/ERF superfamily, and have been most extensively studied on the biological functions. Members of this subfamily have been proven to regulate plant resistances to various abiotic stresses, such as drought, salinity, chilling and some other adversities. Under these stresses, ERFs are usually activated by mitogen-activated protein kinase induced phosphorylation or escape from ubiquitin-ligase enzymes, and then form complex with nucleic proteins before binding to cis-element in promoter regions of stress responsive genes. In this review, we will discuss the phylogenetic relationships among the ERF subfamily proteins, summarize molecular mechanism how the transcriptional activity of ERFs been regulated and how ERFs of different subgroup regulate the transcription of stress responsive genes, such as high-affinity K+ transporter gene PalHKT1;2, reactive oxygen species related genes LcLTP, LcPrx, and LcRP, flavonoids synthesis related genes FtF3H and LhMYBSPLATTER, etc. Though increasing researches demonstrate that ERFs are involved in various abiotic stresses, very few interact proteins and target genes of them have been comprehensively annotated. Hence, future research prospects are described on the mechanisms of how stress signals been transited to ERFs and how ERFs regulate the transcriptional expression of stress responsive genes.
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18
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Xu Y, Wang R, Ma P, Cao J, Cao Y, Zhou Z, Li T, Wu J, Zhang H. A novel maize microRNA negatively regulates resistance to Fusarium verticillioides. MOLECULAR PLANT PATHOLOGY 2022; 23:1446-1460. [PMID: 35700097 PMCID: PMC9452762 DOI: 10.1111/mpp.13240] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 05/02/2022] [Accepted: 05/25/2022] [Indexed: 05/21/2023]
Abstract
Although microRNAs (miRNAs) regulate the defence response against multiple pathogenic fungi in diverse plant species, few efforts have been devoted to deciphering the involvement of miRNA in resistance to Fusarium verticillioides, a major pathogenic fungus affecting maize production. In this study, we discovered a novel F. verticillioides-responsive miRNA designated zma-unmiR4 in maize kernels. The expression of zma-unmiR4 was significantly repressed in the resistant maize line but induced in the susceptible lines upon exposure to F. verticillioides exposure, whereas its target gene ZmGA2ox4 exhibited the opposite pattern of expression. Heterologous overexpression of zma-unmiR4 in Arabidopsis resulted in enhanced growth and compromised resistance to F. verticillioides. By contrast, transgenic plants overexpressing ZmGA2ox4 or the homologue AtGA2ox7 showed impaired growth and enhanced resistance to F. verticillioides. Moreover, zma-unmiR4-mediated suppression of AtGA2ox7 disturbed the accumulation of bioactive gibberellin (GA) in transgenic plants and perturbed the expression of a set of defence-related genes in response to F. verticillioides. Exogenous application of GA or a GA biosynthesis inhibitor modulated F. verticillioides resistance in different plants. Taken together, our results suggest that the zma-unmiR4-ZmGA2ox4 module might act as a major player in balancing growth and resistance to F. verticillioides in maize.
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Affiliation(s)
- Yufang Xu
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Renjie Wang
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Peipei Ma
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Jiansheng Cao
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Yan Cao
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Zijian Zhou
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Tao Li
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
| | - Jianyu Wu
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain CropsHenan Agricultural UniversityZhengzhouChina
| | - Huiyong Zhang
- College of Life SciencesHenan Agricultural UniversityZhengzhouChina
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain CropsHenan Agricultural UniversityZhengzhouChina
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19
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Gonin M, Jeong K, Coudert Y, Lavarenne J, Hoang GT, Bes M, To HTM, Thiaw MN, Do TV, Moukouanga D, Guyomarc'h S, Bellande K, Brossier J, Parizot B, Nguyen HT, Beeckman T, Bergougnoux V, Rouster J, Sallaud C, Laplaze L, Champion A, Gantet P. CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:546-566. [PMID: 35596715 PMCID: PMC9542200 DOI: 10.1111/tpj.15838] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 04/14/2022] [Accepted: 05/01/2022] [Indexed: 06/15/2023]
Abstract
In cereals, the root system is mainly composed of post-embryonic shoot-borne roots, named crown roots. The CROWN ROOTLESS1 (CRL1) transcription factor, belonging to the ASYMMETRIC LEAVES2-LIKE/LATERAL ORGAN BOUNDARIES DOMAIN (ASL/LBD) family, is a key regulator of crown root initiation in rice (Oryza sativa). Here, we show that CRL1 can bind, both in vitro and in vivo, not only the LBD-box, a DNA sequence recognized by several ASL/LBD transcription factors, but also another not previously identified DNA motif that was named CRL1-box. Using rice protoplast transient transactivation assays and a set of previously identified CRL1-regulated genes, we confirm that CRL1 transactivates these genes if they possess at least a CRL1-box or an LBD-box in their promoters. In planta, ChIP-qPCR experiments targeting two of these genes that include both a CRL1- and an LBD-box in their promoter show that CRL1 binds preferentially to the LBD-box in these promoter contexts. CRISPR/Cas9-targeted mutation of these two CRL1-regulated genes, which encode a plant Rho GTPase (OsROP) and a basic helix-loop-helix transcription factor (OsbHLH044), show that both promote crown root development. Finally, we show that OsbHLH044 represses a regulatory module, uncovering how CRL1 regulates specific processes during crown root formation.
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Affiliation(s)
- Mathieu Gonin
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Kwanho Jeong
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Yoan Coudert
- Laboratoire Reproduction et Développement des PlantesUniversité de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, INRIALyon69007France
| | - Jeremy Lavarenne
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Giang Thi Hoang
- National Key Laboratory for Plant Cell Biotechnology, LMI RICE2Agricultural Genetic Institute11300HanoiVietnam
| | - Martine Bes
- CIRAD, UMR AGAPF‐34398MontpellierFrance
- UMR AGAPUniversité de Montpellier, CIRAD, INRA, Montpellier SupAgroMontpellierFrance
| | - Huong Thi Mai To
- University of Science and Technology of Hanoi, LMIRICE2Vietnam Academy of Science and Technology11300HanoiVietnam
| | - Marie‐Rose Ndella Thiaw
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Toan Van Do
- National Key Laboratory for Plant Cell Biotechnology, LMI RICE2Agricultural Genetic Institute11300HanoiVietnam
| | - Daniel Moukouanga
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Soazig Guyomarc'h
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Kevin Bellande
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Jean‐Rémy Brossier
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Boris Parizot
- Department of Plant Biotechnology and BioinformaticsGhent UniversityB‐9052GhentBelgium
- VIB Center for Plant Systems Biology9052GhentBelgium
| | - Hieu Trang Nguyen
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Tom Beeckman
- Department of Plant Biotechnology and BioinformaticsGhent UniversityB‐9052GhentBelgium
- VIB Center for Plant Systems Biology9052GhentBelgium
| | - Véronique Bergougnoux
- Czech Advanced Technology and Research Institute, Centre of Region Haná for Biotechnological and Agricultural ResearchPalacký University OlomoucOlomoucCzech Republic
| | - Jacques Rouster
- Limagrain Field Seeds, Traits and Technologies, Groupe Limagrain—Centre de RechercheRoute d'EnnezatChappesFrance
| | - Christophe Sallaud
- Limagrain Field Seeds, Traits and Technologies, Groupe Limagrain—Centre de RechercheRoute d'EnnezatChappesFrance
| | - Laurent Laplaze
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Antony Champion
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
| | - Pascal Gantet
- UMR DIADEUniversité de Montpellier, IRD, CIRAD911 Avenue Agropolis34394Montpellier cedex 5France
- Czech Advanced Technology and Research Institute, Centre of Region Haná for Biotechnological and Agricultural ResearchPalacký University OlomoucOlomoucCzech Republic
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20
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Genome-Wide Analysis of Type-III Polyketide Synthases in Wheat and Possible Roles in Wheat Sheath-Blight Resistance. Int J Mol Sci 2022; 23:ijms23137187. [PMID: 35806194 PMCID: PMC9266324 DOI: 10.3390/ijms23137187] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 06/17/2022] [Accepted: 06/23/2022] [Indexed: 02/04/2023] Open
Abstract
The enzymes in the chalcone synthase family, also known as type-III polyketide synthases (PKSs), play important roles in the biosynthesis of various plant secondary metabolites and plant adaptation to environmental stresses. There have been few detailed reports regarding the gene and tissue expression profiles of the PKS (TaPKS) family members in wheat (Triticum aestivum L.). In this study, 81 candidate TaPKS genes were identified in the wheat genome, which were designated as TaPKS1–81. Phylogenetic analysis divided the TaPKS genes into two groups. TaPKS gene family expansion mainly occurred via tandem duplication and fragment duplication. In addition, we analyzed the physical and chemical properties, gene structures, and cis-acting elements of TaPKS gene family members. RNA-seq analysis showed that the expression of TaPKS genes was tissue-specific, and their expression levels differed before and after infection with Rhizoctonia cerealis. The expression levels of four TaPKS genes were also analyzed via qRT-PCR after treatment with methyl jasmonate, salicylic acid, abscisic acid, and ethylene. In the present study, we systematically identified and analyzed TaPKS gene family members in wheat, and our findings may facilitate the cloning of candidate genes associated with resistance to sheath blight in wheat.
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21
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Guzha A, McGee R, Scholz P, Hartken D, Lüdke D, Bauer K, Wenig M, Zienkiewicz K, Herrfurth C, Feussner I, Vlot AC, Wiermer M, Haughn G, Ischebeck T. Cell wall-localized BETA-XYLOSIDASE4 contributes to immunity of Arabidopsis against Botrytis cinerea. PLANT PHYSIOLOGY 2022; 189:1794-1813. [PMID: 35485198 PMCID: PMC9237713 DOI: 10.1093/plphys/kiac165] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 03/14/2022] [Indexed: 05/15/2023]
Abstract
Plant cell walls constitute physical barriers that restrict access of microbial pathogens to the contents of plant cells. The primary cell wall of multicellular plants predominantly consists of cellulose, hemicellulose, and pectin, and its composition can change upon stress. BETA-XYLOSIDASE4 (BXL4) belongs to a seven-member gene family in Arabidopsis (Arabidopsis thaliana), one of which encodes a protein (BXL1) involved in cell wall remodeling. We assayed the influence of BXL4 on plant immunity and investigated the subcellular localization and enzymatic activity of BXL4, making use of mutant and overexpression lines. BXL4 localized to the apoplast and was induced upon infection with the necrotrophic fungal pathogen Botrytis cinerea in a jasmonoyl isoleucine-dependent manner. The bxl4 mutants showed a reduced resistance to B. cinerea, while resistance was increased in conditional overexpression lines. Ectopic expression of BXL4 in Arabidopsis seed coat epidermal cells rescued a bxl1 mutant phenotype, suggesting that, like BXL1, BXL4 has both xylosidase and arabinosidase activity. We conclude that BXL4 is a xylosidase/arabinosidase that is secreted to the apoplast and its expression is upregulated under pathogen attack, contributing to immunity against B. cinerea, possibly by removal of arabinose and xylose side-chains of polysaccharides in the primary cell wall.
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Affiliation(s)
| | - Robert McGee
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
| | - Patricia Scholz
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, D-37077 Goettingen, Germany
| | - Denise Hartken
- Molecular Biology of Plant-Microbe Interactions Research Group, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, D-37077 Goettingen Germany
| | | | - Kornelia Bauer
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
| | - Marion Wenig
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
| | - Krzysztof Zienkiewicz
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, D-37077 Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
- UMK Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, 87-100 Toruń, Poland
| | - Cornelia Herrfurth
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, D-37077 Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, D-37077 Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
| | - A Corina Vlot
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
| | - Marcel Wiermer
- Molecular Biology of Plant-Microbe Interactions Research Group, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, D-37077 Goettingen Germany
- Freie Universität Berlin, Institute of Biology, Dahlem Centre of Plant Sciences, Biochemistry of Plant-Microbe Interactions, Königin-Luise-Str. 12-16, 14195 Berlin, Germany
| | - George Haughn
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
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22
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One AP2/ERF Transcription Factor Positively Regulates Pi Uptake and Drought Tolerance in Poplar. Int J Mol Sci 2022; 23:ijms23095241. [PMID: 35563632 PMCID: PMC9099566 DOI: 10.3390/ijms23095241] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 04/30/2022] [Accepted: 05/03/2022] [Indexed: 11/17/2022] Open
Abstract
Drought decreases the inorganic phosphate (Pi) supply of soil, resulting in Pi starvation of plants, but the molecular mechanism of how plants, especially the perennial trees, are tolerant to drought stress and Pi starvation, is still elusive. In this study, we identified an AP2/ERF transcription factor gene, PalERF2, from Populus alba var. pyramidalis, and it was induced by both mannitol treatment and Pi starvation. Overexpressing and knocking-down of PalERF2 both enhanced and attenuated tolerance to drought stress and Pi deficiency compared to WT, respectively. Moreover, the overexpression of PalERF2 up-regulated the expression levels of Pi starvation-induced (PSI) genes and increased Pi uptake under drought conditions; however, its RNAi poplar showed the opposite phenotypes. Subsequent analysis indicated that PalERF2 directly modulated expressions of drought-responsive genes PalRD20 and PalSAG113, as well as PSI genes PalPHL2 and PalPHT1;4, through binding to the DRE motifs on their promoters. These results clearly indicate that poplars can recruit PalERF2 to increase the tolerance to drought and also elevate Pi uptake under drought stress.
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23
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Han W, Xu J, Wan H, Zhou L, Wu B, Gao J, Guo X, Sui C, Wei J. Overexpression of
BcERF3
increases biosynthesis of saikosaponins in
Bupleurum chinense. FEBS Open Bio 2022; 12:1344-1352. [PMID: 35429231 PMCID: PMC9249337 DOI: 10.1002/2211-5463.13412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Revised: 03/03/2022] [Accepted: 04/14/2022] [Indexed: 11/10/2022] Open
Affiliation(s)
- Wenjing Han
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Jiao Xu
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Hefang Wan
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Lei Zhou
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Bin Wu
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Jianping Gao
- Department of Pharmacognosy Shanxi Medicine University Taiyuan 030001 China
| | - Xinwei Guo
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Chun Sui
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
| | - Jianhe Wei
- Institute of Medicinal Plant Development (IMPLAD) Chinese Academy of Medical Sciences & Peking Union Medical College (Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials) Beijing 100193 China
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24
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Imano S, Fushimi M, Camagna M, Tsuyama-Koike A, Mori H, Ashida A, Tanaka A, Sato I, Chiba S, Kawakita K, Ojika M, Takemoto D. AP2/ERF Transcription Factor NbERF-IX-33 Is Involved in the Regulation of Phytoalexin Production for the Resistance of Nicotiana benthamiana to Phytophthora infestans. FRONTIERS IN PLANT SCIENCE 2022; 12:821574. [PMID: 35154216 PMCID: PMC8830488 DOI: 10.3389/fpls.2021.821574] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 12/23/2021] [Indexed: 06/14/2023]
Abstract
Plants recognize molecular patterns unique to a certain group of microbes to induce effective resistance mechanisms. Elicitins are secretory proteins produced by plant pathogenic oomycete genera including Phytophthora and Pythium. Treatment of INF1 (an elicitin produced by P. infestans) induces a series of defense responses in Nicotiana species, including reactive oxygen species (ROS) production, transient induction of ethylene production, hypersensitive cell death and accumulation of the sesquiterpenoid phytoalexin capsidiol. In this study, we analyzed the expression profiles of N. benthamiana genes after INF1 treatment by RNAseq analysis. Based on their expression patterns, N. benthamiana genes were categorized into 20 clusters and 4,761 (8.3%) out of 57,140 genes were assigned to the clusters for INF1-induced genes. All genes encoding enzymes dedicated to capsidiol production, 5-epi-aristolochene (EA) synthase (NbEAS, 10 copies) and EA dehydrogenase (NbEAH, 6 copies), and some genes for ethylene production, such as 1-aminocyclopropane 1-carboxylate (ACC) synthase (NbACS) and ACC oxidase (NbACO), were significantly upregulated by INF1 treatment. Analysis of NbEAS1 and NbEAS4 promoters revealed that AGACGCC (GCC box-like motif) is the essential cis-element required for INF1-induced expression of NbEAS genes. Given that the GCC box is known to be targeted by ERF (ethylene-responsive factor) transcription factors, we created a complete list of N. benthamiana genes encoding AP2/ERF family transcription factors, and identified 45 out of 337 AP2/ERF genes in the clusters for INF1-induced genes. Among INF1-induced NbERF genes, silencing of NbERF-IX-33 compromised resistance against P. infestans and INF1-induced production of capsidiol. Recombinant NbERF-IX-33 protein can bind to the promoter sequence of NbEAS4, suggesting that NbERF-IX-33 is a transcription factor directly regulating the expression of genes for phytoalexin production.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | - Daigo Takemoto
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
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25
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McInturf SA, Khan MA, Gokul A, Castro-Guerrero NA, Höhner R, Li J, Marjault HB, Fichman Y, Kunz HH, Goggin FL, Keyster M, Nechushtai R, Mittler R, Mendoza-Cózatl DG. Cadmium interference with iron sensing reveals transcriptional programs sensitive and insensitive to reactive oxygen species. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:324-338. [PMID: 34499172 DOI: 10.1093/jxb/erab393] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
Abstract
Iron (Fe) is an essential micronutrient whose uptake is tightly regulated to prevent either deficiency or toxicity. Cadmium (Cd) is a non-essential element that induces both Fe deficiency and toxicity; however, the mechanisms behind these Fe/Cd-induced responses are still elusive. Here we explored Cd- and Fe-associated responses in wild-type Arabidopsis and in a mutant that overaccumulates Fe (opt3-2). Gene expression profiling revealed a large overlap between transcripts induced by Fe deficiency and Cd exposure. Interestingly, the use of opt3-2 allowed us to identify additional gene clusters originally induced by Cd in the wild type but repressed in the opt3-2 background. Based on the high levels of H2O2 found in opt3-2, we propose a model where reactive oxygen species prevent the induction of genes that are induced in the wild type by either Fe deficiency or Cd. Interestingly, a defined cluster of Fe-responsive genes was found to be insensitive to this negative feedback, suggesting that their induction by Cd is more likely to be the result of an impaired Fe sensing. Overall, our data suggest that Fe deficiency responses are governed by multiple inputs and that a hierarchical regulation of Fe homeostasis prevents the induction of specific networks when Fe and H2O2 levels are elevated.
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Affiliation(s)
- Samuel A McInturf
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Mather A Khan
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Arun Gokul
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa
| | - Norma A Castro-Guerrero
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Ricarda Höhner
- School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
| | - Jiamei Li
- Department of Entomology and Plant Pathology, 217 Plant Sciences Building, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | | | - Yosef Fichman
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Hans-Henning Kunz
- School of Biological Sciences, Washington State University, PO Box 644236, Pullman, WA 99164-4236, USA
- Biozentrum der LMU München, Germany
| | - Fiona L Goggin
- Department of Entomology and Plant Pathology, 217 Plant Sciences Building, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | - Marshall Keyster
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa
| | - Rachel Nechushtai
- Institute of Life Science, The Hebrew University of Jerusalem, Jerusalem, 91904Israel
| | - Ron Mittler
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - David G Mendoza-Cózatl
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa
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26
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Bacillus amyloliquefaciens SN16-1-Induced Resistance System of the Tomato against Rhizoctonia solani. Pathogens 2021; 11:pathogens11010035. [PMID: 35055983 PMCID: PMC8780726 DOI: 10.3390/pathogens11010035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 12/24/2021] [Accepted: 12/27/2021] [Indexed: 11/17/2022] Open
Abstract
Tomato (Solanum lycopersicum), as an important economical vegetable, is often infected with Rhizoctonia solani, which results in a substantial reduction in production. Therefore, the molecular mechanism of biocontrol microorganisms assisting tomato to resist pathogens is worth exploring. Here, we use Bacillus amyloliquefaciens SN16-1 as biocontrol bacteria, and employed RNA-Seq technology to study tomato gene and defense-signaling pathways expression. Gene Ontology (GO) analyses showed that an oxidation-reduction process, peptidase regulator activity, and oxidoreductase activity were predominant. Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses showed that phenylpropanoid biosynthesis, biosynthesis of unsaturated fatty acids, aldosterone synthesis and secretion, and phototransduction were significantly enriched. SN16-1 activated defenses in the tomato via systemic-acquired resistance (which depends on the salicylic acid signaling pathway), rather than classic induction of systemic resistance. The genes induced by SN16-1 included transcription factors, plant hormones (ethylene, auxin, abscisic acid, and gibberellin), receptor-like kinases, heat shock proteins, and defense proteins. SN16-1 rarely activated pathogenesis-related proteins, but most pathogenesis-related proteins were induced in the presence of the pathogens. In addition, the molecular mechanisms of the response of tomatoes to SN16-1 and R. solani RS520 were significantly different.
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27
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Yang YN, Kim Y, Kim H, Kim SJ, Cho KM, Kim Y, Lee DS, Lee MH, Kim SY, Hong JC, Kwon SJ, Choi J, Park OK. The transcription factor ORA59 exhibits dual DNA binding specificity that differentially regulates ethylene- and jasmonic acid-induced genes in plant immunity. PLANT PHYSIOLOGY 2021; 187:2763-2784. [PMID: 34890461 PMCID: PMC8644270 DOI: 10.1093/plphys/kiab437] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/19/2021] [Indexed: 06/13/2023]
Abstract
Jasmonic acid (JA) and ethylene (ET) signaling modulate plant defense against necrotrophic pathogens in a synergistic and interdependent manner, while JA and ET also have independent roles in certain processes, e.g. in responses to wounding and flooding, respectively. These hormone pathways lead to transcriptional reprogramming, which is a major part of plant immunity and requires the roles of transcription factors. ET response factors are responsible for the transcriptional regulation of JA/ET-responsive defense genes, of which ORA59 functions as a key regulator of this process and has been implicated in the JA-ET crosstalk. We previously demonstrated that Arabidopsis (Arabidopsis thaliana) GDSL LIPASE 1 (GLIP1) depends on ET for gene expression and pathogen resistance. Here, promoter analysis of GLIP1 revealed ERELEE4 as the critical cis-element for ET-responsive GLIP1 expression. In a yeast one-hybrid screening, ORA59 was isolated as a specific transcription factor that binds to the ERELEE4 element, in addition to the well-characterized GCC box. We found that ORA59 regulates JA/ET-responsive genes through direct binding to these elements in gene promoters. Notably, ORA59 exhibited a differential preference for GCC box and ERELEE4, depending on whether ORA59 activation is achieved by JA and ET, respectively. JA and ET induced ORA59 phosphorylation, which was required for both activity and specificity of ORA59. Furthermore, RNA-seq and virus-induced gene silencing analyses led to the identification of ORA59 target genes of distinct functional categories in JA and ET pathways. Our results provide insights into how ORA59 can generate specific patterns of gene expression dynamics through JA and ET hormone pathways.
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Affiliation(s)
- Young Nam Yang
- Department of Life Sciences, Korea University, Seoul 02841, Korea
| | - Youngsung Kim
- Department of Life Sciences, Korea University, Seoul 02841, Korea
| | - Hyeri Kim
- Department of Life Sciences, Korea University, Seoul 02841, Korea
| | - Su Jin Kim
- Department of Life Sciences, Korea University, Seoul 02841, Korea
| | - Kwang-Moon Cho
- Molecular Diagnosis Division, AccuGene, Incheon 22006, Korea
| | - Yerin Kim
- Department of Biomedical Sciences, Korea University College of Medicine, Seoul 02841, Korea
| | - Dong Sook Lee
- Department of Life Sciences, Korea University, Seoul 02841, Korea
| | - Myoung-Hoon Lee
- Department of Life Sciences, Korea University, Seoul 02841, Korea
| | - Soo Young Kim
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Korea
| | - Jong Chan Hong
- Division of Life Science, Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 52828, Korea
| | - Sun Jae Kwon
- Molecular Diagnosis Division, AccuGene, Incheon 22006, Korea
| | - Jungmin Choi
- Department of Biomedical Sciences, Korea University College of Medicine, Seoul 02841, Korea
| | - Ohkmae K Park
- Department of Life Sciences, Korea University, Seoul 02841, Korea
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28
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Agre PA, Norman PE, Asiedu R, Asfaw A. Identification of quantitative trait nucleotides and candidate genes for tuber yield and mosaic virus tolerance in an elite population of white guinea yam (Dioscorea rotundata) using genome-wide association scan. BMC PLANT BIOLOGY 2021; 21:552. [PMID: 34809560 PMCID: PMC8607609 DOI: 10.1186/s12870-021-03314-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 11/02/2021] [Indexed: 05/12/2023]
Abstract
BACKGROUND Improvement of tuber yield and tolerance to viruses are priority objectives in white Guinea yam breeding programs. However, phenotypic selection for these traits is quite challenging due to phenotypic plasticity and cumbersome screening of phenotypic-induced variations. This study assessed quantitative trait nucleotides (QTNs) and the underlying candidate genes related to tuber yield per plant (TYP) and yam mosaic virus (YMV) tolerance in a panel of 406 white Guinea yam (Dioscorea rotundata) breeding lines using a genome-wide association study (GWAS). RESULTS Population structure analysis using 5,581 SNPs differentiated the 406 genotypes into seven distinct sub-groups based delta K. Marker-trait association (MTA) analysis using the multi-locus linear model (mrMLM) identified seventeen QTN regions significant for TYP and five for YMV with various effects. The seveteen QTNs were detected on nine chromosomes, while the five QTNs were identified on five chromosomes. We identified variants responsible for predicting higher yield and low virus severity scores in the breeding panel through the marker-effect prediction. Gene annotation for the significant SNP loci identified several essential putative genes associated with the growth and development of tuber yield and those that code for tolerance to mosaic virus. CONCLUSION Application of different multi-locus models of GWAS identified 22 QTNs. Our results provide valuable insight for marker validation and deployment for tuber yield and mosaic virus tolerance in white yam breeding. The information on SNP variants and genes from the present study would fast-track the application of genomics-informed selection decisions in breeding white Guinea yam for rapid introgression of the targeted traits through markers validation.
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Affiliation(s)
- Paterne A Agre
- International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Oyo State, 200001, Nigeria.
| | - Prince E Norman
- Sierra Leone Agricultural Research Institute, PMB 1313, Tower Hill, Freetown, Sierra Leone
| | - Robert Asiedu
- International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Oyo State, 200001, Nigeria
| | - Asrat Asfaw
- International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Oyo State, 200001, Nigeria
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29
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Zong Y, Hao Z, Tu Z, Shen Y, Zhang C, Wen S, Yang L, Ma J, Li H. Genome-wide survey and identification of AP2/ERF genes involved in shoot and leaf development in Liriodendron chinense. BMC Genomics 2021; 22:807. [PMID: 34749659 PMCID: PMC8576965 DOI: 10.1186/s12864-021-08119-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 10/23/2021] [Indexed: 11/23/2022] Open
Abstract
BACKGROUND Liriodendron chinense is a distinctive ornamental tree species due to its unique leaves and tulip-like flowers. The discovery of genes involved in leaf development and morphogenesis is critical for uncovering the underlying genetic basis of these traits. Genes in the AP2/ERF family are recognized as plant-specific transcription factors that contribute to plant growth, hormone-induced development, ethylene response factors, and stress responses. RESULTS In this study, we identified 104 putative AP2/ERF genes in the recently released L. chinense genome and transcriptome database. In addition, all 104 genes were grouped into four subfamilies, the AP2, ERF, RAV, and Soloist subfamilies. This classification was further supported by the results of gene structure and conserved motif analyses. Intriguingly, after application of a series test of cluster analysis, three AP2 genes, LcERF 94, LcERF 96, and LcERF 98, were identified as tissue-specific in buds based on the expression profiles of various tissues. These results were further validated via RT-qPCR assays and were highly consistent with the STC analysis. We further investigated the dynamic changes of immature leaves by dissecting fresh shoots into seven discontinuous periods, which were empirically identified as shoot apical meristem (SAM), leaf primordia and tender leaf developmental stages according to the anatomic structure. Subsequently, these three candidates were highly expressed in SAM and leaf primordia but rarely in tender leaves, indicating that they were mainly involved in early leaf development and morphogenesis. Moreover, these three genes displayed nuclear subcellular localizations through the transient transformation of tobacco epidermal cells. CONCLUSIONS Overall, we identified 104 AP2/ERF family members at the genome-wide level and discerned three candidate genes that might participate in the development and morphogenesis of the leaf primordium in L. chinense.
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Affiliation(s)
- Yaxian Zong
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Ziyuan Hao
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Zhonghua Tu
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Yufang Shen
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Chengge Zhang
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Shaoying Wen
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Lichun Yang
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Jikai Ma
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China
| | - Huogen Li
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing, 210037, China.
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Sun Y, Liu C, Liu Z, Zhao T, Jiang J, Li J, Xu X, Yang H. Genome-Wide Identification, Characterization and Expression Analysis of the JAZ Gene Family in Resistance to Gray Leaf Spots in Tomato. Int J Mol Sci 2021; 22:ijms22189974. [PMID: 34576142 PMCID: PMC8469637 DOI: 10.3390/ijms22189974] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 09/07/2021] [Accepted: 09/14/2021] [Indexed: 12/27/2022] Open
Abstract
The plant disease resistance system involves a very complex regulatory network in which jasmonates play a key role in response to external biotic or abiotic stresses. As inhibitors of the jasmonic acid (JA) signaling pathway, JASMONATE ZIM domain (JAZ) proteins have been identified in many plant species, and their functions are gradually being clarified. In this study, 26 JAZ genes were identified in tomato. The physical and chemical properties, predicted subcellular localization, gene structure, cis-acting elements, and interspecies collinearity of 26 SlJAZ genes were subsequently analyzed. RNA-seq data combined with qRT-PCR analysis data showed that the expression of most SlJAZ genes were induced in response to Stemphylium lycopersici, methyl jasmonate (MeJA) and salicylic acid (SA). Tobacco rattle virus RNA2-based VIGS vector (TRV2)-SlJAZ25 plants were more resistant to tomato gray leaf spots than TRV2-00 plants. Therefore, we speculated that SlJAZ25 played a negative regulatory role in tomato resistance to gray leaf spots. Based on combining the results of previous studies and those of our experiments, we speculated that SlJAZ25 might be closely related to JA and SA hormone regulation. SlJAZ25 interacted with SlJAR1, SlCOI1, SlMYC2, and other resistance-related genes to form a regulatory network, and these genes played an important role in the regulation of tomato gray leaf spots. The subcellular localization results showed that the SlJAZ25 gene was located in the nucleus. Overall, this study is the first to identify and analyze JAZ family genes in tomato via bioinformatics approaches, clarifying the regulatory role of SlJAZ25 genes in tomato resistance to gray leaf spots and providing new ideas for improving plant disease resistance.
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Affiliation(s)
| | | | | | | | | | | | - Xiangyang Xu
- Correspondence: (X.X.); (H.Y.); Tel.: +86-0451-55190748 (H.Y.)
| | - Huanhuan Yang
- Correspondence: (X.X.); (H.Y.); Tel.: +86-0451-55190748 (H.Y.)
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Yuan Z, Ni X, Arif M, Dong Z, Zhang L, Tan X, Li J, Li C. Transcriptomic Analysis of the Photosynthetic, Respiration, and Aerenchyma Adaptation Strategies in Bermudagrass ( Cynodon dactylon) under Different Submergence Stress. Int J Mol Sci 2021; 22:ijms22157905. [PMID: 34360668 PMCID: PMC8347729 DOI: 10.3390/ijms22157905] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 07/19/2021] [Accepted: 07/20/2021] [Indexed: 12/20/2022] Open
Abstract
Submergence impedes photosynthesis and respiration but facilitates aerenchyma formation in bermudagrass. Still, the regulatory genes underlying these physiological responses are unclear in the literature. To identify differentially expressed genes (DEGs) related to these physiological mechanisms, we studied the expression of DEGs in aboveground and underground tissues of bermudagrass after a 7 d treatment under control (CK), shallow submergence (SS), and deep submergence (DS). Results show that compared with CK, 12276 and 12559 DEGs were identified under SS and DS, respectively. Among them, the DEGs closely related to the metabolism of chlorophyll biosynthesis, light-harvesting, protein complex, and carbon fixation were down-regulated in SS and DS. Meanwhile, a large number of DEGs involved in starch and sucrose hydrolase activities, glycolysis/gluconeogenesis, tricarboxylic acid (TCA) cycle, and oxidative phosphorylation were down-regulated in aboveground tissues of bermudagrass in SS and DS. Whereas in underground tissues of bermudagrass these DEGs were all up-regulated under SS, only beta-fructofuranosidase and α-amylase related genes were up-regulated under DS. In addition, we found that DEGs associated with ethylene signaling, Ca2+-ROS signaling, and cell wall modification were also up-regulated during aerenchyma formation in underground tissues of bermudagrass under SS and DS. These results provide the basis for further exploration of the regulatory and functional genes related to the adaptability of bermudagrass to submergence.
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Affiliation(s)
- Zhongxun Yuan
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
| | - Xilu Ni
- Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of North-Western China, Key Lab for Restoration and Reconstruction of Degraded Ecosystem in North-Western China (Ministry of Education), Ningxia University, Yinchuan 750021, China;
| | - Muhammad Arif
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
| | - Zhi Dong
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
| | - Limiao Zhang
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
| | - Xue Tan
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
| | - Jiajia Li
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
| | - Changxiao Li
- Key Laboratory of Eco-Environments in the Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, College of Life Sciences, Southwest University, Chongqing 400715, China; (Z.Y.); (M.A.); (Z.D.); (L.Z.); (X.T.); (J.L.)
- Correspondence:
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Chen Y, Zhang M, Wang L, Yu X, Li X, Jin D, Zeng J, Ren H, Wang F, Song S, Yan X, Zhao J, Pei Y. GhKWL1 Upregulates GhERF105 but Its Function Is Impaired by Binding with VdISC1, a Pathogenic Effector of Verticillium dahliae. Int J Mol Sci 2021; 22:7328. [PMID: 34298948 PMCID: PMC8306359 DOI: 10.3390/ijms22147328] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 06/27/2021] [Accepted: 07/02/2021] [Indexed: 01/08/2023] Open
Abstract
Verticillium wilt, caused by Verticillium dahliae, is a devastating disease for many important crops, including cotton. Kiwellins (KWLs), a group of cysteine-rich proteins synthesized in many plants, have been shown to be involved in response to various phytopathogens. To evaluate genes for their function in resistance to Verticillium wilt, we investigated KWL homologs in cotton. Thirty-five KWL genes (GhKWLs) were identified from the genome of upland cotton (Gossypium hirsutum). Among them, GhKWL1 was shown to be localized in nucleus and cytosol, and its gene expression is induced by the infection of V. dahliae. We revealed that GhKWL1 was a positive regulator of GhERF105. Silencing of GhKWL1 resulted in a decrease, whereas overexpression led to an increase in resistance of transgenic plants to Verticillium wilt. Interestingly, through binding to GhKWL1, the pathogenic effector protein VdISC1 produced by V. dahliae could impair the defense response mediated by GhKWL1. Therefore, our study suggests there is a GhKWL1-mediated defense response in cotton, which can be hijacked by V. dahliae through the interaction of VdISC1 with GhKWL1.
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Affiliation(s)
- Yang Chen
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Mi Zhang
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Lei Wang
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Xiaohan Yu
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Xianbi Li
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Dan Jin
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Jianyan Zeng
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Hui Ren
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Fanlong Wang
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Shuiqing Song
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Xingying Yan
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Juan Zhao
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
| | - Yan Pei
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400716, China
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Long Non-Coding RNA and Its Regulatory Network Response to Cold Stress in Eucalyptus urophylla S.T.Blake. FORESTS 2021. [DOI: 10.3390/f12070836] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Long non-coding RNA (lncRNA) plays an important regulatory role in plant growth and development, but its systematic identification and analysis in Eucalyptus has not yet been reported. Cold stress has a huge impact on the survival and yield of Eucalyptus seedlings, but the regulatory mechanism of lncRNA in Eucalyptus in response to cold stress is still unclear. In this study, the transcriptomes of young leaves of Eucalyptus urophylla S.T.Blake under low-temperature treatment and restoration were analyzed by RNA-seq. A total of 11,394 lncRNAs and 46,276 mRNAs were identified, of which 300 were differentially expressed lncRNAs (DE_lncRNAs) and 5606 were differentially expressed target genes of lncRNAs under cold stress, with the total number of target genes of DE_lncRNAs being 1681. A total of 677 differentially expressed transcription factors (TFs) were also identified, mainly including ERF, MYB and the NAC transcription factor family. Gene ontology (GO) analysis of the differentially expressed genes (DEGs) and target genes of DE_lncRNAs was mostly related to the response to cold stress and external stimuli. Furthermore, lncRNA–miRNA–mRNA regulatory networks were constructed, and 22 DE_lncRNAs were predicted to be targets or targeting mimics of 20 miRNAs. A qRT-PCR was used to verify the relative expression of genes in the regulatory EuGBF3-EUC_00002677-MSTRG.7690 network, and it matched the transcriptome data, indicating that it may play an important role in the response to cold stress in E. urophylla. This study provides a new insight into lncRNA and its regulatory network under abiotic stress, especially cold stress in E. urophylla.
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Sun X, Huang N, Li X, Zhu J, Bian X, Li H, Wang L, Hu Q, Luo H. A chloroplast heat shock protein modulates growth and abiotic stress response in creeping bentgrass. PLANT, CELL & ENVIRONMENT 2021; 44:1769-1787. [PMID: 33583055 DOI: 10.1111/pce.14031] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 02/09/2021] [Accepted: 02/10/2021] [Indexed: 06/12/2023]
Abstract
Small heat shock proteins (sHSPs), a family of the ubiquitous stress proteins in plants acting as molecular chaperones to protect other proteins from stress-induced damage, have been implicated in plant growth and development as well as plant response to environmental stress, especially heat stress. In this study, a chloroplast-localized sHSP, AsHSP26.8, was overexpressed in creeping bentgrass (Agrostis stolonifera L.) to study its role in regulating plant growth and stress response. Transgenic (TG) creeping bentgrass plants displayed arrested root development, slow growth rate, twisted leaf blades and are more susceptible to heat and salt but less sensitive to drought stress compared to wild-type (WT) controls. RNA-seq analysis revealed that AsHSP26.8 modulated the expression of genes in auxin signalling and stress-related genes such as those encoding HSPs, heat shock factors and other transcription factors. Our results provide new evidence demonstrating that AsHSP26.8 negatively regulates plant growth and development and plays differential roles in plant response to a plethora of diverse abiotic stresses.
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Affiliation(s)
- Xinbo Sun
- College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, China
| | - Ning Huang
- Human Resource Department, Hebei Agricultural University, Baoding, China
| | - Xin Li
- College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, China
| | - Junfei Zhu
- College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, China
| | - Xiuju Bian
- College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, China
| | - Huibin Li
- College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, China
| | - Lihong Wang
- College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, China
| | - Qian Hu
- Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, USA
| | - Hong Luo
- Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, USA
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Lin P, Zhang M, Wang M, Li Y, Liu J, Chen Y. Inoculation with arbuscular mycorrhizal fungus modulates defense-related genes expression in banana seedlings susceptible to wilt disease. PLANT SIGNALING & BEHAVIOR 2021; 16:1884782. [PMID: 33793381 PMCID: PMC8078516 DOI: 10.1080/15592324.2021.1884782] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Banana as an important economic crop worldwide, often suffers from serious damage caused by Fusarium oxysporum f. sp. Cubense. Arbuscular mycorrhizal (AM) fungi have been considered as one of the promising plant biocontrol agents in preventing from root pathogens. This study examined the effect of AM fungal inoculation on plant growth and differential expressions of growth- and defense-related genes in banana seedlings. Tissue-cultured seedlings of Brazilian banana (Musa acuminate Cavendish cv. Brail) were inoculated with AM fungus (Rhizophagus irregularis, Ri), and developed good mycorrhizal symbiosis from 4 to 11 weeks after inoculation with an infection rate up to 71.7% of the roots system. Microbial abundance revealed that Ri abundance in banana roots was 1.85×106 copies/ml at 11 weeks after inoculaiton. Inoculation improved plant dry weights by 47.5, 124, and 129% for stem, leaf, and the whole plant, respectively, during phosphate depletion. Among a total of 1411 differentially expressed genes (DEGs) obtained from the transcriptome data analysis, genes related to plant resistance (e.g. POD, PAL, PYR, and HBP-1b) and those related to plant growth (e.g. IAA, GH3, SAUR, and ARR8) were up-regulated in AM plants. This study demonstrates that AM fungus effectively promoted the growth of banana plants and induced defense-related genes which could help suppress wilt disease. The outcomes of this study form a basis for further study on the mechanism of banana disease resistance induced by AM fungi.
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Affiliation(s)
- Ping Lin
- Institute of Horticulture Science and Engineering, Huaqiao University, Xiamen, China
- Yinglong Chen The UWA Institute of Agriculture, and School of Agriculture and Environment, the University of Western Australia, Perth, WA Australia
| | - Minyu Zhang
- Institute of Horticulture Science and Engineering, Huaqiao University, Xiamen, China
- College of Life Science, Zhaoqing University, Zhaoqing, China
| | - Mingyuan Wang
- Institute of Horticulture Science and Engineering, Huaqiao University, Xiamen, China
- CONTACT Mingyuan Wang Institute of Horticulture Science and Engineering, Huaqiao University, Xiamen, China
| | - Yuqing Li
- Institute of Horticulture Science and Engineering, Huaqiao University, Xiamen, China
| | - Jianfu Liu
- Institute of Horticulture Science and Engineering, Huaqiao University, Xiamen, China
| | - Yinglong Chen
- The UWA Institute of Agriculture, and School of Agriculture and Environment, the University of Western Australia, Perth, Australia
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Frerigmann H, Piotrowski M, Lemke R, Bednarek P, Schulze-Lefert P. A Network of Phosphate Starvation and Immune-Related Signaling and Metabolic Pathways Controls the Interaction between Arabidopsis thaliana and the Beneficial Fungus Colletotrichum tofieldiae. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021; 34:560-570. [PMID: 33226310 DOI: 10.1094/mpmi-08-20-0233-r] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The beneficial root-colonizing fungus Colletotrichum tofieldiae mediates plant growth promotion (PGP) upon phosphate (Pi) starvation in Arabidopsis thaliana. This activity is dependent on the Trp metabolism of the host, including indole glucosinolate (IG) hydrolysis. Here, we show that C. tofieldiae resolves several Pi starvation-induced molecular processes in the host, one of which is the downregulation of auxin signaling in germ-free plants, which is restored in the presence of the fungus. Using CRISPR/Cas9 genome editing, we generated an Arabidopsis triple mutant lacking three homologous nitrilases (NIT1 to NIT3) that are thought to link IG-hydrolysis products with auxin biosynthesis. Retained C. tofieldiae-induced PGP in nit1/2/3 mutant plants demonstrated that this metabolic connection is dispensable for the beneficial activity of the fungus. This suggests that either there is an alternative metabolic link between IG-hydrolysis products and auxin biosynthesis, or C. tofieldiae restores auxin signaling independently of IG metabolism. We show that C. tofieldiae, similar to pathogenic microorganisms, triggers Arabidopsis immune pathways that rely on IG metabolism as well as salicylic acid and ethylene signaling. Analysis of IG-deficient myb mutants revealed that these metabolites are, indeed, important for control of in planta C. tofieldiae growth: however, enhanced C. tofieldiae biomass does not necessarily negatively correlate with PGP. We show that Pi deficiency enables more efficient colonization of Arabidopsis by C. tofieldiae, possibly due to the MYC2-mediated repression of ethylene signaling and changes in the constitutive IG composition in roots.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Henning Frerigmann
- Max Planck Institute for Plant Breeding Research, Department of Plant Microbe Interactions and Cluster of Excellence on Plant Sciences (CEPLAS), D-50829 Cologne, Germany
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland
| | - Markus Piotrowski
- Lehrstuhl für Molekulargenetik und Physiologie der Pflanzen, Ruhr-Universität Bochum, D-44801 Bochum, Germany
| | - René Lemke
- Lehrstuhl für Molekulargenetik und Physiologie der Pflanzen, Ruhr-Universität Bochum, D-44801 Bochum, Germany
| | - Paweł Bednarek
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland
| | - Paul Schulze-Lefert
- Max Planck Institute for Plant Breeding Research, Department of Plant Microbe Interactions and Cluster of Excellence on Plant Sciences (CEPLAS), D-50829 Cologne, Germany
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Li J, Meng Y, Zhang K, Li Q, Li S, Xu B, Georgiev MI, Zhou M. Jasmonic acid-responsive RRTF1 transcription factor controls DTX18 gene expression in hydroxycinnamic acid amide secretion. PLANT PHYSIOLOGY 2021; 185:369-384. [PMID: 33721896 PMCID: PMC8133619 DOI: 10.1093/plphys/kiaa043] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 10/23/2020] [Indexed: 05/18/2023]
Abstract
Jasmonates (JAs) are plant hormones that regulate the biosynthesis of many secondary metabolites, such as hydroxycinnamic acid amides (HCAAs), through jasmonic acid (JA)-responsive transcription factors (TFs). HCAAs are renowned for their role in plant defense against pathogens. The multidrug and toxic compound extrusion transporter DETOXIFICATION18 (DTX18) has been shown to mediate the extracellular accumulation of HCAAs p-coumaroylagmatine (CouAgm) at the plant surface for defense response. However, little is known about the regulatory mechanism of DTX18 gene expression by TFs. Yeast one-hybrid screening using the DTX18 promoter as bait isolated the key positive regulator redox-responsive TF 1 (RRTF1), which is a member of the AP2/ethylene-response factor family of proteins. RRTF1 is a JA-responsive factor that is required for the transcription of the DTX18 gene, and it thus promotes CouAgm secretion at the plant surface. As a result, overexpression of RRTF1 caused increased resistance against the fungus Botrytis cinerea, whereas rrtf1 mutant plants were more susceptible. Using yeast two-hybrid screening, we identified the BTB/POZ-MATH (BPM) protein BPM1 as an interacting partner of RRTF1. The BPM family of proteins acts as substrate adaptors of CUL3-based E3 ubiquitin ligases, and we found that only BPM1 and BPM3 were able to interact with RRTF1. In addition, we demonstrated that RRTF1 was subjected to degradation through the 26S proteasome pathway and that JA stabilized RRTF1. Knockout of BPM1 and BPM3 in bpm1/3 double mutants enhanced RRTF1 accumulation and DTX18 gene expression, thus increasing resistance to the fungus B. cinerea. Our results provide a better understanding of the fine-tuned regulation of JA-induced TFs in HCAA accumulation.
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Affiliation(s)
- Jinbo Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- Life Science College, Luoyang Normal University, Luoyang 471934, China
| | - Yu Meng
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- College of Landscape and Travel, Hebei Agricultural University, Baoding 071001, China
| | - Kaixuan Zhang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Qiong Li
- School of Nursing, Hunan University of Chinese Medicine, Changsha 410208, China
| | - Shijuan Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- College of Plant Pathology, Gansu Agricultural University, Lanzhou 730070, China
| | - Bingliang Xu
- College of Plant Pathology, Gansu Agricultural University, Lanzhou 730070, China
| | - Milen I Georgiev
- Laboratory of Metabolomics, The Stephan Angeloff Institute of Microbiology, Bulgarian Academy of Sciences, Plovdiv, Bulgaria
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria
| | - Meiliang Zhou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- Author for communication: (M.Z.)
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TaAP2-15, An AP2/ERF Transcription Factor, Is Positively Involved in Wheat Resistance to Puccinia striiformis f. sp. tritici. Int J Mol Sci 2021; 22:ijms22042080. [PMID: 33669850 PMCID: PMC7923241 DOI: 10.3390/ijms22042080] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 02/17/2021] [Accepted: 02/18/2021] [Indexed: 12/25/2022] Open
Abstract
AP2 transcription factors play a crucial role in plant development and reproductive growth, as well as response to biotic and abiotic stress. However, the role of TaAP2-15, in the interaction between wheat and the stripe fungus, Puccinia striiformis f. sp. tritici (Pst), remains elusive. In this study, we isolated TaAP2-15 and characterized its function during the interaction. TaAP2-15 was localized in the nucleus of wheat and N. benthamiana. Silencing of TaAP2-15 by barley stripe mosaic virus (BSMV)-mediated VIGS (virus-induced gene silencing) increased the susceptibility of wheat to Pst accompanied by enhanced growth of the pathogen (number of haustoria, haustorial mother cells and hyphal length). We confirmed by quantitative real-time PCR that the transcript levels of pathogenesis-related genes (TaPR1 and TaPR2) were down-regulated, while reactive oxygen species (ROS)-scavenging genes (TaCAT3 and TaFSOD3D) were induced accompanied by reduced accumulation of H2O2. Furthermore, we found that TaAP2-15 interacted with a zinc finger protein (TaRZFP34) that is a homolog of OsRZFP34 in rice. Together our findings demonstrate that TaAP2-15 is positively involved in resistance of wheat to the stripe rust fungus and provides new insights into the roles of AP2 in the host-pathogen interaction.
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Zhang H, Pan X, Liu S, Lin W, Li Y, Zhang X. Genome-wide analysis of AP2/ERF transcription factors in pineapple reveals functional divergence during flowering induction mediated by ethylene and floral organ development. Genomics 2021; 113:474-489. [PMID: 33359830 DOI: 10.1016/j.ygeno.2020.10.040] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 10/03/2020] [Accepted: 10/20/2020] [Indexed: 02/06/2023]
Abstract
The APETALA2/ethylene-responsive factor (AP2/ERF) has important roles in regulating developmental processes and hormone signaling transduction in plants. Pineapple demonstrates a special sensitivity to ethylene, and AP2/ERFs may contribute to this distinct sensitivity of pineapples to ethylene. However, little information is available on the AP2/ERF of pineapple. In this study, 97 AP2/ERF family members were identified from the pineapple genome. The AcAP2/ERF superfamily could be further divided into five subfamilies, and different subfamily existed functional divergence in multifarious biological processes. ERF and RAV subfamily genes might play important roles in the process of ethylene response of pineapple; ERF and DREB subfamily genes had particular functions in the floral organ development. This study is the first to provide detailed information on the features of AP2/ERFs in pineapple, provide new insights into the potential functional roles of the AP2/ERF superfamily members, and will facilitate a better understanding of the molecular mechanism of flower in pineapple.
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Affiliation(s)
- Hongna Zhang
- Key Laboratory of Ministry of Agriculture for Tropical Fruit Biology, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, PR China; Hainan University, Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, Tropical Crop New Variety Breeding Education Engineering Center, Haikou 570102, PR China
| | - Xiaolu Pan
- Key Laboratory of Ministry of Agriculture for Tropical Fruit Biology, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, PR China; Hainan University, Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, Tropical Crop New Variety Breeding Education Engineering Center, Haikou 570102, PR China
| | - Shenghui Liu
- Key Laboratory of Ministry of Agriculture for Tropical Fruit Biology, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, PR China
| | - Wenqiu Lin
- Key Laboratory of Ministry of Agriculture for Tropical Fruit Biology, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, PR China
| | - Yunhe Li
- Key Laboratory of Ministry of Agriculture for Tropical Fruit Biology, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, PR China
| | - Xiumei Zhang
- Key Laboratory of Ministry of Agriculture for Tropical Fruit Biology, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, PR China.
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Das D, Baruah IK, Panda D, Paswan RR, Acharjee S, Sarmah BK. Bruchid beetle ovipositioning mediated defense responses in black gram pods. BMC PLANT BIOLOGY 2021; 21:38. [PMID: 33430784 PMCID: PMC7802178 DOI: 10.1186/s12870-020-02796-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 12/14/2020] [Indexed: 05/20/2023]
Abstract
BACKGROUND Black gram [Vigna mungo (L)] seeds are a rich source of digestible protein and dietary fibre, both for human and animal consumption. However, the quality and quantity of the Vigna seeds are severely affected by bruchid beetles during storage. Therefore, analyses of the expression of the bruchid induced transcript dynamics in black gram pods would be helpful to understand the underlying defense mechanism against bruchid oviposition. RESULTS We used the RNAseq approach to survey the changes in transcript profile in the developing seeds of a moderately resistant cultivar IC-8219 against bruchid oviposition using a susceptible cultivar T-9 as a control. A total of 96,084,600 and 99,532,488 clean reads were generated from eight (4 each) samples of IC-8219 and T-9 cultivar, respectively. Based on the BLASTX search against the NR database, 32,584 CDSs were generated of which 31,817 CDSs were significantly similar to Vigna radiata, a close relative of Vigna mungo. The IC-8219 cultivar had 630 significantly differentially expressed genes (DEGs) of which 304 and 326 genes up and down-regulated, respectively. However, in the T-9 cultivar, only 168 DEGs were identified of which 142 and 26 genes up and down-regulated, respectively. The expression analyses of 10 DEGs by qPCR confirmed the accuracy of the RNA-Seq data. Gene Ontology and KEGG pathway analyses helped us to better understand the role of these DEGs in oviposition mediated defense response of black gram. In both the cultivars, the most significant transcriptomic changes in response to the oviposition were related to the induction of defense response genes, transcription factors, secondary metabolites, enzyme inhibitors, and signal transduction pathways. It appears that the bruchid ovipositioning mediated defense response in black gram is induced by SA signaling pathways and defense genes such as defensin, genes for secondary metabolites, and enzyme inhibitors could be potential candidates for resistance to bruchids. CONCLUSION We generated a transcript profile of immature black gram pods upon bruchid ovipositioning by de novo assembly and studied the underlying defense mechanism of a moderately resistant cultivar.
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Affiliation(s)
- Debajit Das
- Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
| | - Indrani K Baruah
- Office of the ICAR-National Professor (Norman Borlaug Chair) and DBT-AAU Centre, Assam Agricultural University, Jorhat, 785013, India
| | - Debashis Panda
- Distributed Information Centre, Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
| | - Ricky Raj Paswan
- Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
| | - Sumita Acharjee
- Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India.
- Office of the ICAR-National Professor (Norman Borlaug Chair) and DBT-AAU Centre, Assam Agricultural University, Jorhat, 785013, India.
| | - Bidyut Kumar Sarmah
- Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India.
- Office of the ICAR-National Professor (Norman Borlaug Chair) and DBT-AAU Centre, Assam Agricultural University, Jorhat, 785013, India.
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Zang Z, Wang Z, Zhao F, Yang W, Ci J, Ren X, Jiang L, Yang W. Maize Ethylene Response Factor ZmERF061 Is Required for Resistance to Exserohilum turcicum. FRONTIERS IN PLANT SCIENCE 2021; 12:630413. [PMID: 33767717 PMCID: PMC7985547 DOI: 10.3389/fpls.2021.630413] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 01/14/2021] [Indexed: 05/09/2023]
Abstract
Plants have evolved a series of sophisticated defense mechanisms to help them from harm. Ethylene Response Factor (ERF) plays pivotal roles in plant immune reactions, however, its underlying mechanism in maize with a defensive function to Exserohilum turcicum (E. turcicum) remains poorly understood. Here, we isolated and characterized a novel ERF transcription factor, designated ZmERF061, from maize. Phylogenetic analysis revealed that ZmERF061 is a member of B3 group in the ERF family. qRT-PCR assays showed that the expression of ZmERF061 is significantly induced by E. turcicum inoculation and hormone treatments with salicylic acid (SA) and methyl jasmonate (MeJA). ZmERF061 was proved to function as a nucleus-localized transcription activator and specifically bind to the GCC-box element. zmerf061 mutant lines resulted in enhanced susceptibility to E. turcicum via decreasing the expression of ZmPR10.1 and ZmPR10.2 and the activity of antioxidant defense system. zmerf061 mutant lines increased the expression of the SA signaling-related gene ZmPR1a and decreased the expression of the jasmonic acid (JA) signaling-related gene ZmLox1 after infection with E. turcicum. In addition, ZmERF061 could interact with ZmMPK6-1. These results suggested that ZmERF061 plays an important role in response to E. turcicum and may be useful in genetic engineering breeding.
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Affiliation(s)
- Zhenyuan Zang
- College of Agriculture, Jilin Agricultural University, Changchun, China
| | - Zhen Wang
- College of Agriculture, Jilin Agricultural University, Changchun, China
| | - Fuxing Zhao
- College of Agriculture, Jilin Agricultural University, Changchun, China
| | - Wei Yang
- College of Agriculture, Jilin Agricultural University, Changchun, China
| | - Jiabin Ci
- College of Agriculture, Jilin Agricultural University, Changchun, China
| | - Xuejiao Ren
- College of Agriculture, Jilin Agricultural University, Changchun, China
| | - Liangyu Jiang
- College of Agriculture, Jilin Agricultural University, Changchun, China
- Crop Science Post-doctoral Station, Jilin Agricultural University, Changchun, China
- *Correspondence: Liangyu Jiang,
| | - Weiguang Yang
- College of Agriculture, Jilin Agricultural University, Changchun, China
- Weiguang Yang,
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Xie M, Zhang J, Yao T, Bryan AC, Pu Y, Labbé J, Pelletier DA, Engle N, Morrell‐Falvey JL, Schmutz J, Ragauskas AJ, Tschaplinski TJ, Chen F, Tuskan GA, Muchero W, Chen J. Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33. THE NEW PHYTOLOGIST 2020; 228:1627-1639. [PMID: 32706429 PMCID: PMC7692920 DOI: 10.1111/nph.16826] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Accepted: 06/26/2020] [Indexed: 05/04/2023]
Abstract
The apparent antagonism between salicylic acid (SA) and jasmonic acid (JA)/ethylene (ET) signalling resulting in trade-offs between defence against (hemi)biotrophic and necrotrophic pathogens has been widely described across multiple plant species. However, the underlying mechanism remains to be fully established. The molecular and cellular functions of ANGUSTIFOLIA (AN) were characterised, and its role in regulating the pathogenic response was studied in Arabidopsis. We demonstrated that AN, a plant homologue of mammalian C-TERMINAL BINDING PROTEIN (CtBP), antagonistically regulates plant resistance to the hemibiotrophic pathogen Pseudomonas syringae and the necrotrophic pathogen Botrytis cinerea. Consistent with phenotypic observations, transcription of genes involved in SA and JA/ET pathways was antagonistically regulated by AN. By interacting with another nuclear protein TYROSYL-DNA PHOSPHODIESTERASE1 (TDP1), AN imposes transcriptional repression on MYB46, encoding a transcriptional activator of PHENYLALANINE AMMONIA-LYASE (PAL) genes which are required for SA biosynthesis, while releasing TDP1-imposed transcriptional repression on WRKY33, a master regulator of the JA/ET signalling pathway. These findings demonstrate that transcriptional co-regulation of MYB46 and WRKY33 by AN mediates the coordination of SA and JA/ET pathways to optimise defences against (hemi)biotrophic and necrotrophic pathogens.
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Affiliation(s)
- Meng Xie
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
- Department of Plant SciencesUniversity of TennesseeKnoxvilleTN37996USA
- Biology DepartmentBrookhaven National LaboratoryUptonNY11973USA
| | - Jin Zhang
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Tao Yao
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Anthony C. Bryan
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Yunqiao Pu
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Jessy Labbé
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Dale A. Pelletier
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Nancy Engle
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | | | - Jeremy Schmutz
- US Department of Energy Joint Genome InstituteBerkeleyCA94720USA
- HudsonAlpha Institute for BiotechnologyHuntsvilleAL35806USA
| | - Arthur J. Ragauskas
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
- UT‐ORNL Joint Institute for Biological ScienceOak Ridge National LaboratoryOak RidgeTN37831USA
- Department of Chemical and Biomolecular Engineering & Department of Forestry, Wildlife, and FisheriesUniversity of TennesseeKnoxvilleTN37996USA
| | - Timothy J. Tschaplinski
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Feng Chen
- Department of Plant SciencesUniversity of TennesseeKnoxvilleTN37996USA
| | - Gerald A. Tuskan
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Wellington Muchero
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Jin‐Gui Chen
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
- BioEnergy Science CenterOak Ridge National LaboratoryOak RidgeTN37831USA
- Center for Bioenergy InnovationOak Ridge National LaboratoryOak RidgeTN37831USA
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Kosaka A, Suemoto H, Singkaravanit-Ogawa S, Takano Y. Plant defensin expression triggered by fungal pathogen invasion depends on EDR1 protein kinase and ORA59 transcription factor in Arabidopsis thaliana. PLANT SIGNALING & BEHAVIOR 2020; 15:1823120. [PMID: 32985920 PMCID: PMC7671030 DOI: 10.1080/15592324.2020.1823120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Revised: 09/08/2020] [Accepted: 09/09/2020] [Indexed: 06/11/2023]
Abstract
Arabidopsis thaliana exhibits durable 'non-host' resistance against the hemibiotrophic fungal pathogen Colletotrichum tropicale that infects mulberry plants. Arabidopsis non-host resistance comprises two layers of defense: preinvasive and postinvasive resistance. The EDR1 protein kinase contributes to Arabidopsis preinvasive resistance against C. tropicale by inducing the expression of plant defensin (PDF) genes. Here we report that the expressions of multiple PDF genes were strongly induced in Arabidopsis upon invasion by C. tropicale. Invasion by a necrotrophic pathogen, Alternaria brassicicola, also induced PDF expression. Importantly, PDF expression triggered upon invasion by both pathogens was inhibited in edr1 mutants, indicating the requirement of EDR1 for PDF expression in postinvasive resistance by Arabidopsis. Analysis of ora59 mutants also revealed that this gene is critical for induced PDF expression following pathogen invasion. Furthermore, inoculation assays of A. brassicicola indicated that ORA59 is involved in postinvasive resistance against the pathogen, suggesting invasion-triggered PDF expression contributes to postinvasive resistance in Arabidopsis.
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Affiliation(s)
- Ayumi Kosaka
- Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Haruka Suemoto
- Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | | | - Yoshitaka Takano
- Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
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Liu M, Zhang Q, Wang C, Meng T, Wang L, Chen C, Ren Z. CsWRKY10 mediates defence responses to Botrytis cinerea infection in Cucumis sativus. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 300:110640. [PMID: 33180717 DOI: 10.1016/j.plantsci.2020.110640] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 08/16/2020] [Accepted: 08/17/2020] [Indexed: 06/11/2023]
Abstract
Cucumber (Cucumis sativus) is one of the most widely cultivated vegetable crops in the world, and its yield is often reduced due to the infection of Botrytis cinerea (B. cinerea), which causes a serious disease. However, few genes involved in the response to B. cinerea have been identified in cucumber. In this study, we identified that CsWRKY10 plays a key role in the cucumber resistance to B. cinerea because that the overexpression of CsWRKY10 significantly increased the susceptibility to B. cinerea in cucumber. After the pathogen infection, the enzyme activities of catalase, superoxide dismutase and peroxidase in transgenic plants were affected, resulting in the decrease in reactive oxygen species (ROS) contents. In addition, the light microscopic images showed that overexpression of CsWRKY10 promoted the spore germination and mycelia elongation of B. cinerea in cucumber. Importantly, after B. cinerea infection, the contents of jasmonic acid (JA) are decreased, and the expression levels of JA- and salicylic acid- related defence genes significantly changed in transgenic plants. In contrast, overexpression of CsWRKY10 enhanced resistance to Corynespora cassiicola in cucumber. Collectively, this study indicated that CsWRKY10 negatively regulates the resistance of cucumber to B. cinerea by reducing the ROS contents and inhibiting the JA-mediated resistance signalling pathway, but strengthens resistance to Corynespora cassiicola.
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Affiliation(s)
- Mengyu Liu
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
| | - Qingxia Zhang
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
| | - Can Wang
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
| | - Tianqi Meng
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
| | - Lina Wang
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
| | - Chunhua Chen
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
| | - Zhonghai Ren
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, Ministry of Agriculture, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, China.
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Gupta A, Bhardwaj M, Tran LSP. Jasmonic Acid at the Crossroads of Plant Immunity and Pseudomonas syringae Virulence. Int J Mol Sci 2020; 21:E7482. [PMID: 33050569 PMCID: PMC7589129 DOI: 10.3390/ijms21207482] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 10/06/2020] [Accepted: 10/07/2020] [Indexed: 12/19/2022] Open
Abstract
Sensing of pathogen infection by plants elicits early signals that are transduced to affect defense mechanisms, such as effective blockage of pathogen entry by regulation of stomatal closure, cuticle, or callose deposition, change in water potential, and resource acquisition among many others. Pathogens, on the other hand, interfere with plant physiology and protein functioning to counteract plant defense responses. In plants, hormonal homeostasis and signaling are tightly regulated; thus, the phytohormones are qualified as a major group of signaling molecules controlling the most widely tinkered regulatory networks of defense and counter-defense strategies. Notably, the phytohormone jasmonic acid mediates plant defense responses to a wide array of pathogens. In this review, we present the synopsis on the jasmonic acid metabolism and signaling, and the regulatory roles of this hormone in plant defense against the hemibiotrophic bacterial pathogen Pseudomonas syringae. We also elaborate on how this pathogen releases virulence factors and effectors to gain control over plant jasmonic acid signaling to effectively cause disease. The findings discussed in this review may lead to ideas for the development of crop cultivars with enhanced disease resistance by genetic manipulation.
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Affiliation(s)
- Aarti Gupta
- Department of Life Sciences, POSTECH Biotech Center, Pohang University of Science and Technology, Pohang 37673, Korea;
| | - Mamta Bhardwaj
- Department of Botany, Hindu Girls College, Maharshi Dayanand University, Sonipat 131001, India;
| | - Lam-Son Phan Tran
- Institute of Research and Development, Duy Tan University, 03 Quang Trung, Da Nang 550000, Vietnam
- Stress Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, 1-7-19 22, Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan
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Wang Q, Liu H, Zhang M, Liu S, Hao Y, Zhang Y. MdMYC2 and MdERF3 Positively Co-Regulate α-Farnesene Biosynthesis in Apple. FRONTIERS IN PLANT SCIENCE 2020; 11:512844. [PMID: 32983209 PMCID: PMC7492718 DOI: 10.3389/fpls.2020.512844] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 08/18/2020] [Indexed: 05/09/2023]
Abstract
α-Farnesene, a sesquiterpene volatile compound plays an important role in plant defense and is known to be associated with insect attraction and with superficial scald of apple and pear fruits during cold storage. But the mechanism whereby transcription factors regulate apple α-farnesene biosynthesis has not been clarified. Here, we report that two transcription factors, MdMYC2 and MdERF3 regulated α-farnesene biosynthesis in apple fruit. Dual-luciferase assays and Y1H assays indicated that MdMYC2 and MdERF3 effectively trans-activated the MdAFS promoter. EMSAs showed that MdERF3 directly binds the DRE motif in the MdAFS promoter. Subsequently, overexpression of MdMYC2 and MdERF3 in apple calli markedly activated the transcript levels of MdHMGR2 and MdAFS. Furthermore, transient overexpression of MdMYC2 and MdERF3 in apple fruit significantly increased MdAFS expression and hence, α-farnesene production. These results indicate that MdMYC2 and MdERF3 are positive regulators of α-farnesene biosynthesis and have important value in genetic engineering of α-farnesene production.
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Affiliation(s)
- Qing Wang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an, China
| | - Heng Liu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an, China
| | - Min Zhang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an, China
| | - Shaohua Liu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an, China
| | - Yujin Hao
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
| | - Yuanhu Zhang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an, China
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Yao L, Yang B, Ma X, Wang S, Guan Z, Wang B, Jiang Y. A Genome-Wide View of Transcriptional Responses during Aphis glycines Infestation in Soybean. Int J Mol Sci 2020; 21:E5191. [PMID: 32707968 PMCID: PMC7432633 DOI: 10.3390/ijms21155191] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 07/19/2020] [Accepted: 07/20/2020] [Indexed: 11/16/2022] Open
Abstract
Soybean aphid (Aphis glycines Matsumura) is one of the major limiting factors in soybean production. The mechanism of aphid resistance in soybean remains enigmatic as little information is available about the different mechanisms of antibiosis and antixenosis. Here, we used genome-wide gene expression profiling of aphid susceptible, antibiotic, and antixenotic genotypes to investigate the underlying aphid-plant interaction mechanisms. The high expression correlation between infested and non-infested genotypes indicated that the response to aphid was controlled by a small subset of genes. Plant response to aphid infestation was faster in antibiotic genotype and the interaction in antixenotic genotype was moderation. The expression patterns of transcription factor genes in susceptible and antixenotic genotypes clustered together and were distant from those of antibiotic genotypes. Among them APETALA 2/ethylene response factors (AP2/ERF), v-myb avian myeloblastosis viral oncogene homolog (MYB), and the transcription factor contained conserved WRKYGQK domain (WRKY) were proposed to play dominant roles. The jasmonic acid-responsive pathway was dominant in aphid-soybean interaction, and salicylic acid pathway played an important role in antibiotic genotype. Callose deposition was more rapid and efficient in antibiotic genotype, while reactive oxygen species were not involved in the response to aphid attack in resistant genotypes. Our study helps to uncover important genes associated with aphid-attack response in soybean genotypes expressing antibiosis and antixenosis.
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Affiliation(s)
- Luming Yao
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; (L.Y.); (X.M.)
| | - Biyun Yang
- School of Life Sciences, East China Normal University, Shanghai 200241, China; (B.Y.); (S.W.); (Z.G.)
| | - Xiaohong Ma
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; (L.Y.); (X.M.)
| | - Shuangshuang Wang
- School of Life Sciences, East China Normal University, Shanghai 200241, China; (B.Y.); (S.W.); (Z.G.)
| | - Zhe Guan
- School of Life Sciences, East China Normal University, Shanghai 200241, China; (B.Y.); (S.W.); (Z.G.)
| | - Biao Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; (L.Y.); (X.M.)
| | - Yina Jiang
- School of Life Sciences, East China Normal University, Shanghai 200241, China; (B.Y.); (S.W.); (Z.G.)
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Xiong J, Liu L, Ma X, Li F, Tang C, Li Z, Lü B, Zhou T, Lian X, Chang Y, Tang M, Xie S, Lu X. Characterization of PtAOS1 Promoter and Three Novel Interacting Proteins Responding to Drought in Poncirus trifoliata. Int J Mol Sci 2020; 21:ijms21134705. [PMID: 32630273 PMCID: PMC7370134 DOI: 10.3390/ijms21134705] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 06/27/2020] [Accepted: 06/29/2020] [Indexed: 11/16/2022] Open
Abstract
Jasmonic acid (JA) plays a crucial role in various biological processes including development, signal transduction and stress response. Allene oxide synthase (AOS) catalyzing (13S)-hydroperoxyoctadecatrienoic acid (13-HPOT) to an unstable allene oxide is involved in the first step of JA biosynthesis. Here, we isolated the PtAOS1 gene and its promoter from trifoliate orange (Poncirus trifoliata). PtAOS1 contains a putative chloroplast targeting sequence in N-terminal and shows relative to pistachio (Pistacia vera) AOS. A number of stress-, light- and hormone-related cis-elements were found in the PtAOS1 promoter which may be responsible for the up-regulation of PtAOS1 under drought and JA treatments. Transient expression in tobacco (Nicotiana benthamiana) demonstrated that the P-532 (-532 to +1) fragment conferring drive activity was a core region in the PtAOS1 promoter. Using yeast one-hybrid, three novel proteins, PtDUF886, PtDUF1685 and PtRAP2.4, binding to P-532 were identified. The dual luciferase assay in tobacco illustrated that all three transcription factors could enhance PtAOS1 promoter activity. Genes PtDUF1685 and PtRAP2.4 shared an expression pattern which was induced significantly by drought stress. These findings should be available evidence for trifoliate orange responding to drought through JA modulation.
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Affiliation(s)
- Jiang Xiong
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Lian Liu
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Xiaochuan Ma
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Feifei Li
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
- Institute of Horticulture, Hunan Academy of Agricultural Science, Changsha 410125, China
| | - Chaolan Tang
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Zehang Li
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Biwen Lü
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Tie Zhou
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Xuefei Lian
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Yuanyuan Chang
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Mengjing Tang
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Shenxi Xie
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Xiaopeng Lu
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
- Correspondence: ; Tel./Fax: +86-0731-84618171
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Sun X, Zhu J, Li X, Li Z, Han L, Luo H. AsHSP26.8a, a creeping bentgrass small heat shock protein integrates different signaling pathways to modulate plant abiotic stress response. BMC PLANT BIOLOGY 2020; 20:184. [PMID: 32345221 PMCID: PMC7189581 DOI: 10.1186/s12870-020-02369-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 03/29/2020] [Indexed: 05/24/2023]
Abstract
BACKGROUND Small heat shock proteins (sHSPs) are critical for plant response to biotic and abiotic stresses, especially heat stress. They have also been implicated in various aspects of plant development. However, the acting mechanisms of the sHSPs in plants, especially in perennial grass species, remain largely elusive. RESULTS In this study, AsHSP26.8a, a novel chloroplast-localized sHSP gene from creeping bentgrass (Agrostis stolonifera L.) was cloned and its role in plant response to environmental stress was studied. AsHSP26.8a encodes a protein of 26.8 kDa. Its expression was strongly induced in both leaf and root tissues by heat stress. Transgenic Arabidopsis plants overexpressing AsHSP26.8a displayed reduced tolerance to heat stress. Furthermore, overexpression of AsHSP26.8a resulted in hypersensitivity to hormone ABA and salinity stress. Global gene expression analysis revealed AsHSP26.8a-modulated expression of heat-shock transcription factor gene, and the involvement of AsHSP26.8a in ABA-dependent and -independent as well as other stress signaling pathways. CONCLUSIONS Our results suggest that AsHSP26.8a may negatively regulate plant response to various abiotic stresses through modulating ABA and other stress signaling pathways.
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Affiliation(s)
- Xinbo Sun
- Key Laboratory of Crop Growth Regulation of Hebei Province, College of Agronomy, Hebei Agricultural University, Baoding, Hebei, 071001, People's Republic of China
- Department of Genetics and Biochemistry, Clemson University, 110 Biosystems Research Complex, Clemson, SC, 29634, USA
| | - Junfei Zhu
- Key Laboratory of Crop Growth Regulation of Hebei Province, College of Agronomy, Hebei Agricultural University, Baoding, Hebei, 071001, People's Republic of China
| | - Xin Li
- Key Laboratory of Crop Growth Regulation of Hebei Province, College of Agronomy, Hebei Agricultural University, Baoding, Hebei, 071001, People's Republic of China
| | - Zhigang Li
- Department of Genetics and Biochemistry, Clemson University, 110 Biosystems Research Complex, Clemson, SC, 29634, USA
| | - Liebao Han
- Turfgrass Research Institute, Beijing Forestry University, Beijing, 100083, People's Republic of China.
| | - Hong Luo
- Department of Genetics and Biochemistry, Clemson University, 110 Biosystems Research Complex, Clemson, SC, 29634, USA.
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Structural variation, functional differentiation and expression characteristics of the AP2/ERF gene family and its response to cold stress and methyl jasmonate in Panax ginseng C.A. Meyer. PLoS One 2020; 15:e0226055. [PMID: 32176699 PMCID: PMC7075567 DOI: 10.1371/journal.pone.0226055] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2019] [Accepted: 02/27/2020] [Indexed: 11/25/2022] Open
Abstract
The APETALA2/Ethylene Responsive Factor (AP2/ERF) gene family has been shown to play a crucial role in plant growth and development, stress responses and secondary metabolite biosynthesis. Nevertheless, little is known about the gene family in ginseng (Panax ginseng C.A. Meyer), an important medicinal herb in Asia and North America. Here, we report the systematic analysis of the gene family in ginseng using several transcriptomic databases. A total of 189 putative AP2/ERF genes, defined as PgERF001 through PgERF189, were identified and these PgERF genes were spliced into 397 transcripts. The 93 PgERF genes that have complete AP2 domains in open reading frame were classified into five subfamilies, DREB, ERF, AP2, RAV and Soloist. The DREB subfamily and ERF subfamily were further clustered into four and six groups, respectively, compared to the 12 groups of these subfamilies found in Arabidopsis thaliana. Gene ontology categorized these 397 transcripts of the 189 PgERF genes into eight functional subcategories, suggesting their functional differentiation, and they have been especially enriched for the subcategory of nucleic acid binding transcription factor activity. The expression activity and networks of the 397 PgERF transcripts have substantially diversified across tissues, developmental stages and genotypes. The expressions of the PgERF genes also significantly varied, when ginseng was subjected to cold stress, as tested using six PgERF genes, PgERF073, PgERF079, PgERF110, PgERF115, PgERF120 and PgERF128, randomly selected from the DREB subfamily. This result suggests that the DREB subfamily genes play an important role in plant response to cold stress. Finally, we studied the responses of the PgERF genes to methyl jasmonate (MeJA). We found that 288 (72.5%) of the 397 PgERF gene transcripts responded to the MeJA treatment, with 136 up-regulated and 152 down-regulated, indicating that most members of the PgERF gene family are responsive to MeJA. These results, therefore, provide new resources and knowledge necessary for family-wide functional analysis of the PgERF genes in ginseng and related species.
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