Resistance and resilience responses of a range of soil eukaryote and bacterial taxa to fungicide application

Effect of fungicides on soil respiration, microbial community, and enzyme activity: A global meta-analysis (1975-2024)

Fungicides effectively prevent and control crop diseases caused by microorganisms; however, they also unintentionally affect soil microorganisms and enzyme activity. This study conducted a meta-analysis of 73 published studies to investigate the effects of fungicide application concentration and duration on soil respiration, microbial diversity, and enzyme activity. Increasing the concentration of fungicide application significantly reduced soil basal respiration and microbial carbon, with inhibitory effects reaching 1.45 % and 7.37 %, respectively, at 5 times the recommended application rate. The application of fungicides significantly reduced the activities of alkaline phosphatase, neutral phosphatase, acid phosphatase, dehydrogenase, and urease, with the activities of alkaline phosphatase and urease decreasing by 15.43 % and 7.76 %, respectively. Additionally, the application of fungicides significantly reduced fungi, actinomycetes, Shannon index, Simpson index, and McIntosh index while not affecting bacterial diversity. When the fungicide concentration is at 0-1 times, 1-5 times, and > 5 times, the number of fungi decreases by 14.53 %, 19.91 %, and 33.81 %, respectively. Temporally, soil basal respiration and microbial carbon significantly declined in the first 0-21d after fungicide application, but no such inhibitory effect was observed after 21d. Even 56 days after using the fungicide, it inhibited the activities of alkaline phosphatase and catalase by 13.14 % and 7.13 %, respectively. As time after the application of fungicides increases, the number of fungi decreases significantly, while the number of actinomycetes gradually recovers. Overall, fungicides inhibit the abundance, diversity, and enzyme activity of soil microorganisms; however, precise control of fungicide dosage is essential to minimize their toxic effects on soil.

Temporal dynamics of total and bioavailable fungicide concentrations in soil and their effect upon nine soil microbial markers

Pesticides constitute an integral part of today's agriculture. Their widespread use leads to ubiquitous contamination of the environment, including soils. Soils are a precious resource providing vital functions to society - thus, it is of utmost importance to thoroughly assess the risk posed by widespread pesticide contamination. The exposure of non-target organisms to pesticides in soils is challenging to quantify since only a fraction of the total pesticide concentration is bioavailable. Here we measured and compared the bioavailable and total concentrations of three fungicides - boscalid, azoxystrobin, and epoxiconazole - and evaluated which concentration best predicts effects on nine microbial markers. The experiments were performed in three different soils at five time points over two months employing nearly 900 microcosms with a model plant. The total and bioavailable concentrations of azoxystrobin and boscalid decreased steadily during the trial to levels of 25 % and 8 % of the original concentration, respectively, while the concentration of epoxiconazole in soil nearly remained unchanged. The bioavailable fraction generally showed a slightly faster and more pronounced decline. The microbial markers varied in their sensitivity to the three fungicides. Specific microbial markers, such as arbuscular mycorrhizal fungi, and bacterial and archaeal ammonia oxidizers, were most sensitive to each of the fungicide treatments, making them suitable indicators for pesticide effects. Even though the responses were predominantly negative, they were also transient, and the impact was no longer evident after two months. Finally, the bioavailable fraction did not better predict the relationships between exposure and effect than the total concentration. This study demonstrates that key microbial groups are temporarily susceptible to a single fungicide application, pointing to the risk that repeated use of pesticides may disrupt vital soil functions such as nutrient cycling in agroecosystems.

The contributions of enchytraeids and earthworms to the soil mineralization process in soils with fungicide

Pesticides may harm soil organisms such as earthworms and enchytraeids, but knowledge is lacking on their relative sensitivity to these chemicals and the consequences on soil functions. The aim of this study was to assess the impact of exposure to a commercial fungicide formulation (Swing® Gold, containing dimoxystrobin and epoxiconazole) on the function of earthworms (Aporrectodea caliginosa) and enchytraeids (Enchytraeus buchholzi) in soil organic matter (SOM) mineralization. The soil organisms were incubated alone and together in a 26-day laboratory experiment. At the recommended field rate, the fungicide induced a decrease in the SOM mineralization and a delay in the maximum daily CO₂ emissions compared to the control soil without fungicide. Soil fauna also influenced SOM mineralization with a higher cumulated CO₂ release after 26 days in the control soil with earthworms (by 21%) than without fauna. When both earthworms and enchytraeids were present, SOM mineralization did not increase, and there was a negative effect on earthworm weight gain. Finally, an alteration of fauna influence with treatment was observed from day 19, meaning that the effect of fauna on SOM mineralization changed with fungicide treatment. Earthworms no longer promoted SOM mineralization when fungicide was present at three-fold the recommended field rate. The effects of enchytraeids on SOM mineralization were similar with and without fungicide exposure. This study underlines the importance of considering the relative sensitivity of soil organisms to environmental factors and interactions between them when assessing soil functioning.

Ecotoxicity evaluation of azoxystrobin on Eisenia fetida in different soils

Azoxystrobin, a widely used broad-spectrum strobilurin fungicide, may pose a potential threat in agricultural ecosystems. To assess the ecological risk of azoxystrobin in real soil environments, we performed a study on the toxic effects of azoxystrobin on earthworms (Eisenia fetida) in three different natural soils (fluvo-aquic soil, black soil and red clay soil) and an artificial soil. Acute toxicity of azoxystrobin was determined by filter paper test and soil test. Accordingly, exposure concentrations of chronic toxicity were set at 0, 0.1, 1.0 and 2.5 mg kg^-1. For chronic toxicity test, reactive oxygen species, activity of antioxidant enzymes (superoxide dismutase, catalase and peroxidase), detoxifying enzyme (glutathione transferase), level of lipid peroxidation (malondialdehyde) and level of oxygen damage of DNA (8-hydroxydeoxyguanosine) in earthworms were determined on the 7th, 14th, 21st, 28th, 42nd and 56th days after treatment. Both acute and chronic toxic results showed azoxystrobin exhibit higher toxicity in natural soil than in artificial soil, indicating that traditional artificial soil testing method underestimate ecotoxicity of azoxystrobin in a real agricultural environment on the earthworm population. Combining with the analysis of soil physicochemical properties, the present experiment provided scientific guidance for rational application of azoxystrobin in agricultural production systems.

Ecotoxicology of strobilurin fungicides

Strobilurin fungicides (SFs), a class of new fungicides, use strobilurin A as a lead compound. However, with excessive production and usage, the SF residues in soil and aquatic ecosystems may lead to environmental pollution. The mechanism of action (MOA) of SFs is respiratory inhibition of fungal mitochondria. Specifically, azoxystrobin (AZO), pyraclostrobin (PYR), trifloxystrobin (TRI), fluoxastrobin (FLUO), picoxystrobin (PICO), and kresoxim-methyl (KRE) are considered the most widely used SFs. The toxicities of those six fungicides in the environment are still unclear. The present review summarized the toxicities of the six SFs to terrestrial and aquatic biota, including mice, amphibians, aquatic organisms (fish, daphnia, algae, etc.), apoidea, soil animals (earthworms and Folsomia fimetaria), and soil microorganisms. We also review the residue, fate, and transportation of SFs. The results indicate that SFs are highly toxic to aquatic and soil organisms and pose potential risks to ecosystems. Current toxicology studies are more focused on acute or chronic toxicity, but the underlying mechanisms are still unclear and require further analysis. In addition, a simple and scientific analysis method is needed to compare the toxicity differences of different SFs to the same test organisms or differences in the same SFs to different test organisms.

Impact of foliar fungicides on target and non-target soil microbial communities in cucumber crops

The application of foliar fungicides to horticultural crops has raised public concerns worldwide. In fact, it has been demonstrated that such fungicides have an impact on non-target microorganisms in the rhizosphere. Fluopyram, triadimenol and penthiopyrad are three broad-spectrum fungicides recommended to control foliar diseases. In our experiment, these fungicides were applied to a cucumber crop to mainly control downy mildew caused by Pseudoperonospora cubensis and grey mold caused by Botrytis cinerea. At the same time, we found that these treatments also controlled other fungal pathogens affecting cucumber crops, particularly penthiopyrad, which was more effective. Once the fungicide application period was over, the effect decreased, although fungicide traces remained in the soil. Furthermore, microbial soil community analysis indicated that both fungicide treatments affect fungal communities to a greater extent than bacterial communities.

The extent and pathways of nitrogen loss in turfgrass systems: Age impacts

Nitrogen loss from fertilized turf has been a concern for decades, with most research focused on inorganic (NO₃^-) leaching. The present work examined both inorganic and organic N species in leachate and soil N₂O emissions from intact soil cores of a bermudagrass chronosequence (1, 15, 20, and 109 years old) collected in both winter and summer. Measurements of soil N₂O emissions were made daily for 3 weeks, while leachate was sampled once a week. Four treatments were established to examine the impacts of fertilization and temperature: no N, low N at 30 kg N ha^-1, and high N at 60 kg N ha^-1, plus a combination of high N and temperature (13 °C in winter or 33 °C in summer compared to the standard 23 °C). Total reactive N loss generally showed a "cup" pattern of turf age, being lowest for the 20 years old. Averaged across all intact soil cores sampled in winter and summer, organic N leaching accounted for 51% of total reactive N loss, followed by inorganic N leaching at 41% and N₂O-N efflux at 8%. Proportional loss among the fractions varied with grass age, season, and temperature and fertilization treatments. While high temperature enhanced total reactive N loss, it had little influence on the partitioning of loss among dissolved organic N, inorganic N and N₂O-N when C availability was expected to be high in summer due to rhizodeposition and root turnover. This effect of temperature was perhaps due to higher microbial turnover in response to increased C availability in summer. However when C availability was low in winter, warming might mainly affect microbial growth efficiency and therefore partitioning of N. This work provides a new insight into the interactive controls of warming and substrate availability on dissolved organic N loss from turfgrass systems.

Effects of hexaconazole application on soil microbes community and nitrogen transformations in paddy soils

The ecological risks of widely used hexaconazole on soil microbes remain obscure. Thus, a 3-month-long experiment using two typical paddy soils in China (red soil and black soil) was conducted to assess the effects of hexaconazole (0.6 (T1) and 6 (T10) mgkg^-1 soil) on the overall microbial biomass, respiratory activity, bacterial abundance and community structure, and nitrogen transformations. Soil was sampled after 7, 15, 30, 60, and 90days of incubation. The half-lives of the two doses of hexaconazole varied from 122 to 135d in the black soil and from 270 to 845d in the red soil. Both dosages of hexaconazole did not affect NH⁺₄-N content, N₂-fixing bacterial populations, total bacterial diversity, and community structure, but transitorily decreased the populations of total bacteria in both soil types. In the black soil, T10 negatively affected microbial biomass carbon (MBC) and soil basal respiration (R_B), but transitorily increased NO^-₃-N concentration and ammonia-oxidizing bacteria populations, while T1 had almost no effect on most of the indicators. As for red soil, both concentrations of fungicide significantly, but transitorily, inhibited MBC and R_B, while only T10 had a relatively long stimulatory effect on NO^-₃-N concentration and ammonia-oxidizing archaea populations. This study showed that over application of hexaconazole is indeed harmful to soil microorganisms and may reduce soil quality and increase the risk of nitrogen loss in paddy soils.

The depleted mineralization of the fungicide chlorothalonil derived from loss in soil microbial diversity

There are lack of studies regarding the effects of microbial diversity on specific soil functions, such as pesticides degradation. This study evaluated the role of bacterial community diversity and biochar on chlorothalonil (CTN) degradation, using 'dilution to extinction' approach, PCR-DGGE/16S rRNA gene technique, and radiorespirometry (14C-CTN). Biochar and microbial community dilution affected structure of the microbial community. In spite of that, CTN mineralization was slow, but dissipation was very fast (D50 < 1.0 d) due to immediate chemical degradation and formation of non-extractable (bound) residues. However, any depletion on soil microbial diversity strongly affected CTN mineralization, suggesting that this function is related to less abundant but specific microbial groups (CTN degraders) or to soil microbial diversity. The extent of these effects will strongly depend on the compound nature (recalcitrance) and soil matrix/substrate (bioavailability). It can be corroborated by the fact that biochar affected CTN sorption, its bioavailability, and subsequently its mineralization rate in the NS. These data indicate a strong relationship between soil microbial diversity and pesticide degradation, which is an acting form to mitigate xenobiotics accumulation in the environment.

Pesticide dissipation and microbial community changes in a biopurification system: influence of the rhizosphere

The dissipation of atrazine, chlorpyrifos and iprodione in a biopurification system and changes in the microbial and some biological parameters influenced by the rhizosphere of Lolium perenne were studied in a column system packed with an organic biomixture. Three column depths were analyzed for residual pesticides, peroxidase, fluorescein diacetate activity and microbial communities. Fungal colonization was analyzed by confocal laser scanning microscopy to assess the extent of its proliferation in wheat straw. The L. perenne rhizosphere enhanced pesticide dissipation and negligible pesticide residues were detected at 20-30 cm column depth. Atrazine, chlorpyrifos and iprodione removal was 82, 89 and 74% respectively in the first 10 cm depth for columns with vegetal cover. The presence of L. perenne in contaminated columns stimulated peroxidase activity in all three column depth sections. Fluorescein diacetate activity decreased over time in all column sections with the highest values in biomixtures with vegetal cover. Microbial communities, analyzed by PCR-DGGE, were not affected by the pesticide mixture application, presenting high values of similarity (>65%) with and without vegetal cover. Microbial abundance of Actinobacteria varied according to treatment and no clear link was observed. However, bacterial abundance increased over time and was similar with and without vegetal cover. On the other hand, fungal abundance decreased in all sections of columns after 40 days, but an increase was observed in response to pesticide application. Fungal colonization and straw degradation during pesticide dissipation were verified by monitoring the lignin autofluorescence loss.