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Saitta ET, Balaji L, Mitchell JS, Makovicky PJ. Feather evolution following flight loss in crown group birds: relaxed selection and developmental constraints. Evolution 2025; 79:737-751. [PMID: 39898432 DOI: 10.1093/evolut/qpaf020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 12/18/2024] [Accepted: 01/30/2025] [Indexed: 02/04/2025]
Abstract
Feathers are complex structures exhibiting structural/functional disparity across species and plumage. Flight was lost in >30 extant lineages from ~79.58 Ma-15 Ka. Effects of flight loss on senses, neuroanatomy, and skeletomusculature are known. To study how flightlessness affects feathers, we measured 11 feather metrics across the plumage of 30 flightless taxa and their phylogenetically closest volant taxa, with broader sampling of primaries across all orders of crown birds. Our sample includes 27 independent flight losses, representing nearly half of extant flightless species. Feather asymmetry measured by barb angle differences between trailing and leading vanes decreases in flightless lineages, most prominently in flight feathers and weakest in contour feathers. Greatest changes in feather anatomy occur in older flightless lineages (penguins, ratites). Comparative methods show that many microscopic feather traits are not dramatically modified after flightlessness compared to body mass increase and relative wing and tail fan reduction. Changes involved with greater vane symmetry show stronger shifts, however. Relaxing selection for flight does not rapidly modify feather flight adaptations, apart from asymmetry. Developmental constraints and relaxed selection for novel feather morphologies may explain some observed changes. Macroscopic changes to flight apparati (skeletomusculature, airfoil size) are more evident in recently flightless taxa and could more reliably detect flightlessness in fossils, with increased feather symmetry as a potential microscopic signal. We observed apical modification in later stages of feather development (asymmetric displacement of barb loci), while morphologies arising during early developmental stages are only altered after millions of years of flightlessness.
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Affiliation(s)
- Evan T Saitta
- Life Sciences Section, Field Museum of Natural History, Negaunee Integrative Research Center, Chicago, IL, United States
| | - Lilja Balaji
- Department of Geosciences, University of Cincinnati, Cincinnati, OH, United States
| | | | - Peter J Makovicky
- Life Sciences Section, Field Museum of Natural History, Negaunee Integrative Research Center, Chicago, IL, United States
- Department of Earth & Environmental Sciences, University of Minnesota, Minneapolis, MN, United States
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2
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Chen D, Zhuang Z, Huang M, Huang Y, Yan Y, Zhang Y, Lin Y, Jin X, Wang Y, Huang J, Xu W, Pan J, Wang H, Huang F, Liao K, Cheng M, Zhu Z, Bai Y, Niu Z, Zhang Z, Xiang Y, Wei X, Yang T, Zeng T, Dong Y, Lei Y, Sun Y, Wang J, Yang H, Sun Y, Cao G, Poo M, Liu L, Naumann RK, Xu C, Wang Z, Xu X, Liu S. Genomic evolution reshapes cell-type diversification in the amniote brain. Dev Cell 2025:S1534-5807(25)00252-7. [PMID: 40367951 DOI: 10.1016/j.devcel.2025.04.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Revised: 03/05/2025] [Accepted: 04/18/2025] [Indexed: 05/16/2025]
Abstract
Over 320 million years of evolution, amniotes have developed complex brains and cognition through largely unexplored genetic and gene expression mechanisms. We created a comprehensive single-cell atlas of over 1.3 million cells from the telencephalon and cerebellum of turtles, zebra finches, pigeons, mice, and macaques, employing single-cell resolution spatial transcriptomics to validate gene expression patterns across species. Our study identifies significant species-specific variations in cell types, highlighting their conservation and diversification in evolution. We found pronounced differences in telencephalon excitatory neurons (EXs) and cerebellar cell types between birds and mammals. Birds predominantly express SLC17A6 in EX, whereas mammals express SLC17A7 in the neocortex and SLC17A6 elsewhere, possibly due to loss of function of SLC17A7 in birds. Additionally, we identified a bird-specific Purkinje cell subtype (SVIL+), implicating the lysine-specific demethylase 11 (LSD1)/KDM1A pathway in learning and circadian rhythms and containing numerous positively selected genes, which suggests an evolutionary optimization of cerebellar functions for ecological and behavioral adaptation. Our findings elucidate the complex interplay between genetic evolution and environmental adaptation, underscoring the role of genetic diversification in the development of specialized cell types across amniotes.
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Affiliation(s)
- Duoyuan Chen
- BGI Research, Hangzhou 310030, China; BGI Research, Shenzhen 518083, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China; State Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Hangzhou 310030, China
| | - Zhenkun Zhuang
- BGI Research, Hangzhou 310030, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China; BGI Research, Shenzhen 518083, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China; State Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Hangzhou 310030, China
| | - Maolin Huang
- School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China
| | | | - Yuting Yan
- BGI Research, Hangzhou 310030, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China
| | - Yanru Zhang
- BGI Research, Hangzhou 310030, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China
| | - Youning Lin
- BGI Research, Hangzhou 310030, China; BGI Research, Shenzhen 518083, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Xiaoying Jin
- BGI Research, Hangzhou 310030, China; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Yuanmei Wang
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; BGI Research, Shenzhen 518083, China; HIM-BGI Omics Center, Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou 310018, China
| | - Jinfeng Huang
- The Institute of Biomedical and Health Engineering, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 1068 Xueyuan Avenue, Shenzhen University Town, Nanshan District, Shenzhen 518055, China
| | - Wenbo Xu
- School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China
| | | | - Hong Wang
- The Institute of Biomedical and Health Engineering, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 1068 Xueyuan Avenue, Shenzhen University Town, Nanshan District, Shenzhen 518055, China
| | - Fubaoqian Huang
- BGI Research, Hangzhou 310030, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Kuo Liao
- BGI Research, Hangzhou 310030, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China
| | - Mengnan Cheng
- BGI Research, Hangzhou 310030, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Zhiyong Zhu
- BGI Research, Hangzhou 310030, China; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Yinqi Bai
- BGI Research, Hangzhou 310030, China
| | - Zhiwei Niu
- BGI Research, Hangzhou 310030, China; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Ze Zhang
- BGI Research, Hangzhou 310030, China; Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China
| | - Ya Xiang
- BGI Research, Hangzhou 310030, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China; College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Xiaofeng Wei
- China National GeneBank, BGI Research, Shenzhen 518120, China; Guangdong Genomics Data Center, BGl research, Shenzhen 518120, China
| | - Tao Yang
- China National GeneBank, BGI Research, Shenzhen 518120, China; Guangdong Genomics Data Center, BGl research, Shenzhen 518120, China
| | - Tao Zeng
- BGI Research, Hangzhou 310030, China; BGI Research, Shenzhen 518083, China
| | - Yuliang Dong
- BGI Research, Hangzhou 310030, China; BGI Research, Shenzhen 518083, China
| | - Ying Lei
- BGI Research, Hangzhou 310030, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China; Shanxi Medical University, BGI Collaborative Center for Future Medicine, Shanxi Medical University, Taiyuan 030001, China
| | - Yangang Sun
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Jian Wang
- BGI Research, Hangzhou 310030, China
| | - Huanming Yang
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; BGI Research, Shenzhen 518083, China; HIM-BGI Omics Center, Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou 310018, China; James D. Watson Institute of Genome Sciences, Hangzhou 310029, China
| | - Yidi Sun
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Gang Cao
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Muming Poo
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China
| | - Longqi Liu
- BGI Research, Hangzhou 310030, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China; Shanxi Medical University, BGI Collaborative Center for Future Medicine, Shanxi Medical University, Taiyuan 030001, China
| | - Robert K Naumann
- The Institute of Biomedical and Health Engineering, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 1068 Xueyuan Avenue, Shenzhen University Town, Nanshan District, Shenzhen 518055, China.
| | - Chun Xu
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
| | - Zhenlong Wang
- School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China.
| | - Xun Xu
- BGI Research, Hangzhou 310030, China; BGI Research, Shenzhen 518083, China; Shanxi Medical University, BGI Collaborative Center for Future Medicine, Shanxi Medical University, Taiyuan 030001, China.
| | - Shiping Liu
- BGI Research, Hangzhou 310030, China; BGI Research, Shenzhen 518083, China; Key Laboratory of Spatial Omics of Zhejiang Province, BGI Research, Hangzhou 310030, China; State Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Hangzhou 310030, China.
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3
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Manley GA, Köppl C. When dinosaurs hear like barn owls: pitfalls and caveats in assessing hearing in dinosaurs. Biol Lett 2025; 21:20240680. [PMID: 40328310 PMCID: PMC12055281 DOI: 10.1098/rsbl.2024.0680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 01/23/2025] [Accepted: 04/03/2025] [Indexed: 05/08/2025] Open
Abstract
Computer tomographic scanning is now a standard technique for studying the internal features of fossil structures. This enables comparisons with related modern species and speculation concerning function and even behaviour. We express here a concern that inferences about dinosaur hearing and further implications about, e.g. communication or hunting skills, are sometimes stretched beyond what can reasonably be gleaned from fossil data. We summarize current knowledge about structure-function relationships in the avian auditory inner ear and provide guidance for evidence-based inference of hearing capabilities from bony features. In particular, we point out limitations and caveats regarding inferences that are based on one isolated feature alone, typically cochlear length. As an example illustrating some of these pitfalls, we use a recent analysis (Choiniere et al. 2021 Science 372, 610-613 (doi:10.1126/science.abe7941)) that concluded that Shuvuuia deserti, a theropod dinosaur, showed pronounced sensory specializations, including 'specialized hearing acuity, rivalling that of today's barn owl'. We re-analysed the skeletal features of Shuvuuia's inner ear and argue that the analogy between hearing in Shuvuuia and the extant barn owl was based on an ill-chosen metric in assessing the relative length of the cochlear duct and a questionable assumption concerning inner-ear structure.
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Affiliation(s)
- Geoffrey A. Manley
- Department of Neuroscience, and Cluster of Excellence "Hearing4all", and Research Centre Neurosensory Science, Carl von Ossietzky Universität Oldenburg, Oldenburg, Niedersachsen, Germany
| | - Christine Köppl
- Department of Neuroscience, and Cluster of Excellence "Hearing4all", and Research Centre Neurosensory Science, Carl von Ossietzky Universität Oldenburg, Oldenburg, Niedersachsen, Germany
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4
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Voris JT, Therrien F, Ridgely RC, Witmer LM, Zelenitsky DK. Ontogenetic Changes in Endocranial Anatomy in Gorgosaurus libratus (Theropoda: Tyrannosauridae) Provide Insight Into the Evolution of the Tyrannosauroid Endocranium. J Comp Neurol 2025; 533:e70056. [PMID: 40293427 PMCID: PMC12036647 DOI: 10.1002/cne.70056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Revised: 03/11/2025] [Accepted: 04/07/2025] [Indexed: 04/30/2025]
Abstract
Over the past two decades, increased accessibility to computed tomography (CT) scanners has greatly facilitated documentation of the endocranium in numerous extinct theropod taxa. However, most of these studies have focused on the morphology of mature individuals, thus changes or variation through ontogeny of the endocranium in theropods remains largely unknown. The current study sheds light on the endocranial anatomy of the eutyrannosaurian tyrannosauroid, Gorgosaurus libratus, in both an ontogenetic and evolutionary context. Based on CT scans of six Gorgosaurus braincases, including those of two recently discovered juvenile individuals, we virtually reconstruct and describe the endocranial morphology for a growth series of G. libratus. Despite considerable changes in skull architecture, relatively few ontogenetic changes occurred in the endocranium of Gorgosaurus. These changes include a subtle increase in the length of the hindbrain region of the endocast and increased inflation of the tympanic sinus diverticula in adults relative to juveniles. Among the most significant ontogenetic changes is a decrease in the distinctiveness of the brain morphology in endocasts as Gorgosaurus mature. The endocasts of juvenile Gorgosaurus exhibit better defined cerebral hemispheres, optic lobes, and cerebella than those of larger and more mature individuals. This suggests a closer correspondence between the endocast and the brain in juvenile tyrannosaurids, indicating the endocast of juvenile individuals provides a more accurate representation of the structure of the brain and its regions relative to the endocast of more mature individuals. The brain of Gorgosaurus displays a mix of basal archosaurian traits and more derived coelurosaurian traits. More primitive archosaurian features of the Gorgosaurus brain include large olfactory bulbs and tracts, a posteroventrally oriented long axis of the cerebrum, and posteriorly positioned optic lobes, whereas derived features include prominent hindbrain flexure, a somewhat enlarged cerebrum, and a cerebellum that at least partially separates the left and right optic lobes. An understanding of the evolutionary acquisition of such derived features leading to the avian brain may be further elucidated via the study of the endocasts of juvenile individuals (more reflective of the structure/organization of various brain regions) of earlier-diverging theropods (e.g., Allosauroidea, Megalosauroidea, and Coelophysoidea).
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Affiliation(s)
- Jared T. Voris
- Department of Earth, Energy, and EnvironmentUniversity of CalgaryCalgaryAlbertaCanada
| | - François Therrien
- Department of Earth, Energy, and EnvironmentUniversity of CalgaryCalgaryAlbertaCanada
- Royal Tyrrell Museum of PalaeontologyDrumhellerAlbertaCanada
| | - Ryan C. Ridgely
- Department of Biomedical Sciences, College of Osteopathic MedicineOhio UniversityAthensOhioUSA
| | - Lawrence M. Witmer
- Department of Biomedical Sciences, College of Osteopathic MedicineOhio UniversityAthensOhioUSA
| | - Darla K. Zelenitsky
- Department of Earth, Energy, and EnvironmentUniversity of CalgaryCalgaryAlbertaCanada
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5
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Gutiérrez-Ibáñez C, Němec P, Paré M, Wylie DR, Lefebvre L. How do big brains evolve? Trends Ecol Evol 2025:S0169-5347(25)00063-1. [PMID: 40251059 DOI: 10.1016/j.tree.2025.03.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2024] [Revised: 03/17/2025] [Accepted: 03/21/2025] [Indexed: 04/20/2025]
Abstract
In both birds and mammals, variation in brain size predominantly reflects variation in mass or volume of the pallium (neocortex) and, to a lesser extent, of the cerebellum, suggesting convergent coevolution of brains and cognition. When brain measures are based on neuron counts, however, a surprisingly different picture emerges: The number of neurons in the cerebellum surpasses those in the pallium of all mammals (including humans and other primates) and in many but not all birds studied to date. In particular, parrots and corvids, clades known for cognitive abilities that match those of primates, have brains that contain more pallial than cerebellar neurons. Birds and mammals may thus have followed different evolutionary routes of pallial-cerebellar coordination behind enhanced cognitive complexity.
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Affiliation(s)
| | - Pavel Němec
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Martin Paré
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada
| | - Douglas R Wylie
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada
| | - Louis Lefebvre
- Department of Biology, McGill University, Montréal, QC, Canada; CREAF, Autonomous University of Barcelona, Catalonia, Spain.
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6
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Wilken AT, Sellers KC, Cost IN, Davis J, Middleton KM, Witmer LM, Holliday CM. Avian cranial kinesis is the result of increased encephalization during the origin of birds. Proc Natl Acad Sci U S A 2025; 122:e2411138122. [PMID: 40096621 PMCID: PMC12002250 DOI: 10.1073/pnas.2411138122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 01/13/2025] [Indexed: 03/19/2025] Open
Abstract
The origin of birds represents a pivotal transition in vertebrate evolution, marked by significant changes in both brain size and feeding biomechanics. The evolution of the avian skull involved dramatic modifications, such as a segmented palate and the development of powered cranial kinesis in neognath birds. Powered kinesis, the ability to move parts of the skull independently, is considered a key innovation behind the dietary diversity and evolutionary success of birds. However, the processes driving the emergence of avian kinesis have remained unclear until recently. By analyzing data from Mesozoic birds, including reinterpretations of palate homology, 3D jaw muscle biomechanics, and linkage analysis, researchers have quantified changes in muscle forces and their effects on palate mechanics during the transition from theropods to birds. As the neurocranium expanded in non-avian theropods, temporal muscles shifted to more rostrocaudal positions in birds, aiding in the segmentation of the pterygoid. This musculoskeletal transformation increased fore-aft muscle force in neognaths, enabling powered cranial kinesis. A critical change was the separation of the epipterygoid ossification from the braincase, leading to the breakdown of primitive kinematic linkages and the development of a new basicranial joint, which allowed for greater cranial flexibility. These findings shed light on how the neurosensory and feeding systems coevolved during bird origins and offer new methods for identifying cranial kinesis in extinct vertebrates.
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Affiliation(s)
- Alec T. Wilken
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL60637
| | - Kaleb C. Sellers
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL60637
| | - Ian N. Cost
- Department of Biology, Albright College, Reading, PA19612
| | - Julian Davis
- Department of Engineering, University of Southern Indiana, Evansville, IN47712
| | - Kevin M. Middleton
- Division of Biological Sciences, University of Missouri, Columbia, MO65211
| | - Lawrence M. Witmer
- Department of Biomedical Sciences, Heritage College of Osteopathic Medicine, Ohio Center for Ecology and Evolutionary Studies, Ohio University, Athens, OH45701
| | - Casey M. Holliday
- Department of Pathology and Anatomical Sciences, University of Missouri, Columbia, MO65212
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7
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Duchêne DA, Chowdhury AA, Yang J, Iglesias-Carrasco M, Stiller J, Feng S, Bhatt S, Gilbert MTP, Zhang G, Tobias JA, Ho SYW. Drivers of avian genomic change revealed by evolutionary rate decomposition. Nature 2025:10.1038/s41586-025-08777-7. [PMID: 40108459 DOI: 10.1038/s41586-025-08777-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 02/12/2025] [Indexed: 03/22/2025]
Abstract
Modern birds have diversified into a striking array of forms, behaviours and ecological roles. Analyses of molecular evolutionary rates can reveal the links between genomic and phenotypic change1-4, but disentangling the drivers of rate variation at the whole-genome scale has been difficult. Using comprehensive estimates of traits and evolutionary rates across a family-level phylogeny of birds5,6, we find that genome-wide mutation rates across lineages are predominantly explained by clutch size and generation length, whereas rate variation across genes is driven by the content of guanine and cytosine. Here, to find the subsets of genes and lineages that dominate evolutionary rate variation in birds, we estimated the influence of individual lineages on decomposed axes of gene-specific evolutionary rates. We find that most of the rate variation occurs along recent branches of the tree, associated with present-day families of birds. Additional tests on axes of rate variation show rapid changes in microchromosomes immediately after the Cretaceous-Palaeogene transition. These apparent pulses of evolution are consistent with major changes in the genetic machineries for meiosis, heart performance, and RNA splicing, surveillance and translation, and correlate with the ecological diversity reflected in increased tarsus length. Collectively, our analyses paint a nuanced picture of avian evolution, revealing that the ancestors of the most diverse lineages of birds underwent major genomic changes related to mutation, gene usage and niche expansion in the early Palaeogene period.
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Affiliation(s)
- David A Duchêne
- Section of Health Data Science and AI, Department of Public Health, University of Copenhagen, Copenhagen, Denmark.
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark.
| | - Al-Aabid Chowdhury
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia
| | - Jingyi Yang
- Department of Life Sciences, Imperial College London, Ascot, UK
| | - Maider Iglesias-Carrasco
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Doñana Biological Station-Spanish Research Council CSIC, Seville, Spain
| | - Josefin Stiller
- Centre for Biodiversity Genomics, University of Copenhagen, Copenhagen, Denmark
| | - Shaohong Feng
- Center for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, Hangzhou, China
- Department of General Surgery of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China
- Innovation Center of Yangtze River Delta, Zhejiang University, Hangzhou, China
| | - Samir Bhatt
- Section of Health Data Science and AI, Department of Public Health, University of Copenhagen, Copenhagen, Denmark
- MRC Centre for Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, London, UK
| | - M Thomas P Gilbert
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Department of Natural History, University Museum, Norwegian University of Science and Technology, Trondheim, Norway
| | - Guojie Zhang
- Center for Evolutionary and Organismal Biology, Liangzhu Laboratory, Zhejiang University School of Medicine, Hangzhou, China
- Innovation Center of Yangtze River Delta, Zhejiang University, Hangzhou, China
- Villum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Joseph A Tobias
- Department of Life Sciences, Imperial College London, Ascot, UK
| | - Simon Y W Ho
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia
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8
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Jin L, Jiang Y, Han L, Luan X, Liu X, Liao W. Big-brained alien birds tend to occur climatic niche shifts through enhanced behavioral innovation. Integr Zool 2025; 20:407-418. [PMID: 38872346 DOI: 10.1111/1749-4877.12861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2024]
Abstract
Identifying climatic niche shift and its influencing factors is of great significance in predicting the risk of alien species invasions accurately. Previous studies have attempted to identify the factors related to the niche shift of alien species in their invaded ranges, including changes in introduction history, selection of exact climate predictors, and anthropogenic factors. However, the effect of species-level traits on niche shift remains largely unexplored, especially those reflecting the species' adaptation ability to new environments. Based on the occurrence data of 117 successful alien bird invaders at a global scale, their native and invaded climatic niches were compared, and the potential influencing factors were identified. Our results show the niche overlap was low, with more than 75% of the non-native birds representing climatic niche shift (i.e. >10% niche expansion). In addition, 85% of the species showed a large proportion (mean ± SD, 39% ± 21%) of niche unfilling. Relative brain size (RBS) after accounting for body size had no direct effect on niche shift, but path analysis showed that RBS had an indirect effect on niche shift by acting on behavioral innovation primarily on technical innovation rather than consumer innovation. These findings suggested the incorporation of species' important behavioral adaptation traits may be promising to develop future prediction frameworks of biological invasion risk in response to the continued global change.
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Affiliation(s)
- Long Jin
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
- Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal University, Nanchong, Sichuan, China
- Key Laboratory of Artificial Propagation and Utilization in Anurans of Nanchong City, China West Normal University, Nanchong, Sichuan, China
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Ying Jiang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
- Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal University, Nanchong, Sichuan, China
- Key Laboratory of Artificial Propagation and Utilization in Anurans of Nanchong City, China West Normal University, Nanchong, Sichuan, China
| | - Lixia Han
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Xiaofeng Luan
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
| | - Xuan Liu
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Wenbo Liao
- Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal University, Nanchong, Sichuan, China
- Key Laboratory of Artificial Propagation and Utilization in Anurans of Nanchong City, China West Normal University, Nanchong, Sichuan, China
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9
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Clark FE, Burdass J, Kavanagh A, King A. Palaeognath birds innovate to solve a novel foraging problem. Sci Rep 2025; 15:4512. [PMID: 39979404 PMCID: PMC11842627 DOI: 10.1038/s41598-025-88217-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Accepted: 01/24/2025] [Indexed: 02/22/2025] Open
Abstract
The ability to innovate implies flexible cognition, and is used as a broad metric of intelligence. Innovation in birds has been intensively studied in the larger and more taxonomically diverse Neognathae clade (particularly crows and parrots) and overlooked in the smaller and more ancestral Palaeognathae clade. The current study provides the first known evidence of technical innovation in palaeognath birds. We tested the ability of nine individuals of three species to move a hole towards a chamber to access a food reward. This problem was different to traditional innovation puzzle-boxes where an obstacle is moved away from a food chamber. Three emus and one rhea produced a wheel-turning innovation, moving the hole in the most efficient direction (closer to the nearest food item) in 90% of cases. One rhea dismantled the task twice by removing the central bolt, which we suggest is a second type of innovation, and it did not persist once they innovated the wheel turning solution. Ostriches did not innovate. We classify innovation in palaeognaths as low level/simplistic, relying on general exploration and asocial trial and error learning. Our research suggests that technical innovation may have evolved far earlier in birds than previously thought, and palaeognath birds are a compelling taxonomic group for further cognitive research.
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Affiliation(s)
- Fay E Clark
- School of Psychological Science, University of Bristol, Bristol, BS8 1TU, UK.
| | - Jasmine Burdass
- School of Psychological Science, University of Bristol, Bristol, BS8 1TU, UK
| | - Annalise Kavanagh
- School of Psychological Science, University of Bristol, Bristol, BS8 1TU, UK
| | - Annabel King
- School of Psychological Science, University of Bristol, Bristol, BS8 1TU, UK
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10
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Keirnan AR, Cunha F, Citron S, Prideaux G, Iwaniuk AN, Weisbecker V. Avian telencephalon and cerebellum volumes can be accurately estimated from digital brain endocasts. Biol Lett 2025; 21:20240596. [PMID: 39837487 PMCID: PMC11750377 DOI: 10.1098/rsbl.2024.0596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Revised: 11/29/2024] [Accepted: 12/15/2024] [Indexed: 01/23/2025] Open
Abstract
For studies of the evolution of vertebrate brain anatomy and potentially associated behaviours, reconstructions of digital brain endocasts from computed tomography scans have revolutionized our capacity to collect neuroanatomical data. However, measurements from digital endocasts must be validated as reflecting actual brain anatomy, which is difficult because the collection of soft tissue information through histology is laborious and time-consuming. In birds, the reliability of digital endocast measurements as volume proxies for the two largest brain regions-the telencephalon and cerebellum-remains to be validated despite their use as proxies, e.g. of cognitive performance or flight ability. We here use the largest dataset of histology and digital endocasts to date, including 136 species from 25 avian orders, to compare digital endocast surface area measurements with actual brain volumes of the telencephalon, cerebellum and whole-brain endocast. Using linear and phylogenetically informed regression analyses, we demonstrate that endocast surfaces are strongly correlated with their brain volume counterparts for both absolute and relative size. This provides empirical support for using endocast-derived cerebellar and telencephalic surface areas in existing and future studies of living and extinct birds, with potential to expand to the dinosaur-bird transition in the future.
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Affiliation(s)
- Aubrey R. Keirnan
- College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia
| | - Felipe Cunha
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Sara Citron
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Gavin Prideaux
- College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia
| | - Andrew N. Iwaniuk
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Vera Weisbecker
- College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia
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11
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Lobón-Rovira J, Marugán-Lobón J, Nebreda SM, Buckley D, Stanley EL, Köhnk S, Glaw F, Conradie W, Bauer AM. Adaptive or non-adaptive? Cranial evolution in a radiation of miniaturized day geckos. BMC Ecol Evol 2024; 24:150. [PMID: 39730989 DOI: 10.1186/s12862-024-02344-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Accepted: 12/20/2024] [Indexed: 12/29/2024] Open
Abstract
Lygodactylus geckos represent a well-documented radiation of miniaturized lizards with diverse life-history traits that are widely distributed in Africa, Madagascar, and South America. The group has diversified into numerous species with high levels of morphological similarity. The evolutionary processes underlying such diversification remain enigmatic, because species live in different ecological biomes, ecoregions and microhabitats, while suggesting strikingly high levels of homoplasy. To underscore this evolutionary pattern, here we explore the shape variation of skull elements (i.e., cranium, jaw and inner ear) using 3D geometric morphometrics and phylogenetic comparative methods on computed tomography scans (CT-scan) of a sample encompassing almost all recognized taxa within Lygodactylus. The results of this work show that skull and inner ear shape variation is low (i.e., there is high overlapping on the morphospace) across geographic regions, macrohabitats and lifestyles, implying extensive homoplasy. Furthermore, we also found a strong influence of allometry shaping cranial variation both at intra and interspecific levels, suggesting a major constraint underlying skull architecture, probably as a consequence of its miniaturization. The remaining variation that is not allometric is independent of phylogeny and ecological adaptation and can probably be interpreted as the result of intrinsic developmental plasticity. This, in turn, supports the interpretation that speciation in this group is largely concordant with a non-adaptive hypothesis, which results mainly from vicariant processes.
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Affiliation(s)
- Javier Lobón-Rovira
- CIBIO Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Rua Padre Armando Quintas, Campus de Vairão, Vairão, 4485-661, Portugal.
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Vairão, 4485-661, Portugal.
| | - Jesus Marugán-Lobón
- Departamento de Biología, Unidad de Paleontología, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), c/Darwin 2, Madrid, 28049, Spain
- Centro para la Integración en Paleobiología, Universidad Autónoma de Madrid (UAM), Madrid, 28049, Spain
| | - Sergio M Nebreda
- Departamento de Biología, Unidad de Paleontología, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), c/Darwin 2, Madrid, 28049, Spain
- Centro para la Integración en Paleobiología, Universidad Autónoma de Madrid (UAM), Madrid, 28049, Spain
| | - David Buckley
- Departamento de Biología, Unidad de Genética, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), c/Darwin 2, Madrid, 28049, Spain
- Centro de Investigación en Biodiversidad y Cambio Global CIBC-UAM, Facultad de Ciencias, Universidad Autónoma de Madrid, c/Darwin 2, Madrid, 28049, Spain
| | - Edward L Stanley
- Division of Digital Imaging, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
| | - Stephanie Köhnk
- Morphology Lab, LIB - Leibniz Institute for the Analysis of Biodiversity Change, Martin-Luther-King-Platz 3, 20146, Hamburg, Germany
- Olive Ridley Project, 91 Padiham Road, Sabden, Clitheroe, Lancashire, BB7 9EX, UK
| | - Frank Glaw
- Zoologische Staatssammlung München (ZSM-SNSB), Münchhausenstraße 21, 81247, München, Germany
| | - Werner Conradie
- Port Elizabeth Museum (Bayworld), P.O. Box 13147, Humewood, Gqeberha, 6013, South Africa
- Department of Nature Conservation Management, Natural Resource Science and Management Cluster, Faculty of Science, Nelson Mandela University, George Campus, George, South Africa
| | - Aaron M Bauer
- Department of Biology and Center for Biodiversity and Ecosystem Stewardship, Villanova University, 800 Lancaster Avenue, Villanova, PA, 19085, USA
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12
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Tsuboi M, Sztepanacz J, De Lisle S, Voje KL, Grabowski M, Hopkins MJ, Porto A, Balk M, Pontarp M, Rossoni D, Hildesheim LS, Horta-Lacueva QJB, Hohmann N, Holstad A, Lürig M, Milocco L, Nilén S, Passarotto A, Svensson EI, Villegas C, Winslott E, Liow LH, Hunt G, Love AC, Houle D. The paradox of predictability provides a bridge between micro- and macroevolution. J Evol Biol 2024; 37:1413-1432. [PMID: 39208440 DOI: 10.1093/jeb/voae103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Accepted: 08/22/2024] [Indexed: 09/04/2024]
Abstract
The relationship between the evolutionary dynamics observed in contemporary populations (microevolution) and evolution on timescales of millions of years (macroevolution) has been a topic of considerable debate. Historically, this debate centers on inconsistencies between microevolutionary processes and macroevolutionary patterns. Here, we characterize a striking exception: emerging evidence indicates that standing variation in contemporary populations and macroevolutionary rates of phenotypic divergence is often positively correlated. This apparent consistency between micro- and macroevolution is paradoxical because it contradicts our previous understanding of phenotypic evolution and is so far unexplained. Here, we explore the prospects for bridging evolutionary timescales through an examination of this "paradox of predictability." We begin by explaining why the divergence-variance correlation is a paradox, followed by data analysis to show that the correlation is a general phenomenon across a broad range of temporal scales, from a few generations to tens of millions of years. Then we review complementary approaches from quantitative genetics, comparative morphology, evo-devo, and paleontology to argue that they can help to address the paradox from the shared vantage point of recent work on evolvability. In conclusion, we recommend a methodological orientation that combines different kinds of short-term and long-term data using multiple analytical frameworks in an interdisciplinary research program. Such a program will increase our general understanding of how evolution works within and across timescales.
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Affiliation(s)
| | - Jacqueline Sztepanacz
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - Stephen De Lisle
- Department of Biology, Lund University, Lund, Sweden
- Department of Environmental and Life Sciences, Karlstad University, Karlstad, Sweden
| | - Kjetil L Voje
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Mark Grabowski
- Research Centre for Evolutionary Anthropology and Palaeoecology, School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, United Kingdom
| | - Melanie J Hopkins
- Division of Paleontology (Invertebrates), American Museum of Natural History, New York, United States
| | - Arthur Porto
- Florida Museum of Natural History, University of Florida, Gainesville, United States
| | - Meghan Balk
- Natural History Museum, University of Oslo, Oslo, Norway
| | | | - Daniela Rossoni
- Department of Biological Science, Florida State University, Tallahassee, United States
| | | | | | - Niklas Hohmann
- Department of Earth Sciences, Utrecht University, Utrecht, The Netherlands
- Faculty of Biology, Institute of Evolutionary Biology, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland
| | - Agnes Holstad
- Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Trondheim, Norway
| | - Moritz Lürig
- Department of Biology, Lund University, Lund, Sweden
| | | | - Sofie Nilén
- Department of Biology, Lund University, Lund, Sweden
| | - Arianna Passarotto
- Department of Biology, Lund University, Lund, Sweden
- Facultad de Biología, Universidad de Sevilla, Sevilla, Spain
| | | | - Cristina Villegas
- Centro de Filosofia das Ciências, Departamento de História e Filosofia Ciências, Universidade de Lisboa, Lisboa, Portugal
| | | | - Lee Hsiang Liow
- Natural History Museum, University of Oslo, Oslo, Norway
- Department of Geosciences, Centre for Planetary Habitability, University of Oslo, Oslo, Norway
| | - Gene Hunt
- Department of Paleobiology, Smithsonian Institution, National Museum of Natural History, Washington, United States
| | - Alan C Love
- Department of Philosophy, Minnesota Center for Philosophy of Science, University of Minnesota, Minneapolis, United States
| | - David Houle
- Department of Biological Science, Florida State University, Tallahassee, United States
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13
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Balanoff AM. Dinosaur palaeoneurology: an evolving science. Biol Lett 2024; 20:20240472. [PMID: 39689851 DOI: 10.1098/rsbl.2024.0472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2024] [Revised: 10/08/2024] [Accepted: 10/26/2024] [Indexed: 12/19/2024] Open
Abstract
Our fascination with dinosaur brains and their capabilities essentially began with the first dinosaur discovery. The history of this study is a useful reflection of palaeoneurology as a whole and its relationship to a more inclusive evolutionary neuroscience. I argue that this relationship is imbued with high heuristic potential, but one whose realization requires overcoming certain constraints. These constraints include the need for a stable phylogenetic framework, methods for efficient and precise endocast construction, and fossil researchers who are steeped in a neuroscience perspective. The progress that has already been made in these areas sets the stage for a more mature palaeoneurology-not only one capable of being informed by neuroscience discoveries but one that drives such discoveries. I draw from work on the size, shape, behavioural correlates and developmental role of the dinosaur brain to outline current advances in dinosaur palaeoneurology. My examples largely are taken from theropods and centre on questions related to the origin of birds and their unique locomotory capabilities. The hope, however, is that these exemplify the potential for study in other dinosaur groups, and for utilizing the dinosaur-bird lineage as a parallel model on a par with mammals for studying encephalization.
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Affiliation(s)
- Amy M Balanoff
- Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, MD, USA
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14
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Caspar KR, Gutiérrez-Ibáñez C, Bertrand OC, Carr T, Colbourne JAD, Erb A, George H, Holtz TR, Naish D, Wylie DR, Hurlburt GR. How smart was T. rex? Testing claims of exceptional cognition in dinosaurs and the application of neuron count estimates in palaeontological research. Anat Rec (Hoboken) 2024; 307:3685-3716. [PMID: 38668805 DOI: 10.1002/ar.25459] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 04/03/2024] [Accepted: 04/07/2024] [Indexed: 11/07/2024]
Abstract
Recent years have seen increasing scientific interest in whether neuron counts can act as correlates of diverse biological phenomena. Lately, Herculano-Houzel (2023) argued that fossil endocasts and comparative neurological data from extant sauropsids allow to reconstruct telencephalic neuron counts in Mesozoic dinosaurs and pterosaurs, which might act as proxies for behaviors and life history traits in these animals. According to this analysis, large theropods such as Tyrannosaurus rex were long-lived, exceptionally intelligent animals equipped with "macaque- or baboon-like cognition", whereas sauropods and most ornithischian dinosaurs would have displayed significantly smaller brains and an ectothermic physiology. Besides challenging established views on Mesozoic dinosaur biology, these claims raise questions on whether neuron count estimates could benefit research on fossil animals in general. Here, we address these findings by revisiting Herculano-Houzel's (2023) work, identifying several crucial shortcomings regarding analysis and interpretation. We present revised estimates of encephalization and telencephalic neuron counts in dinosaurs, which we derive from phylogenetically informed modeling and an amended dataset of endocranial measurements. For large-bodied theropods in particular, we recover significantly lower neuron counts than previously proposed. Furthermore, we review the suitability of neurological variables such as neuron numbers and relative brain size to predict cognitive complexity, metabolic rate and life history traits in dinosaurs, coming to the conclusion that they are flawed proxies for these biological phenomena. Instead of relying on such neurological estimates when reconstructing Mesozoic dinosaur biology, we argue that integrative studies are needed to approach this complex subject.
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Affiliation(s)
- Kai R Caspar
- Institute of Cell Biology, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
- Department of Game Management and Wildlife Biology, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Prague, Czech Republic
| | | | - Ornella C Bertrand
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain
- Section of Mammals, Carnegie Museum of Natural History, Pittsburgh, Pennsylvania, USA
| | - Thomas Carr
- Department of Biology, Carthage College, Kenosha, Wisconsin, USA
| | - Jennifer A D Colbourne
- Comparative Cognition Unit, Messerli Research Institute, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Arthur Erb
- School of GeoSciences, Grant Institute, University of Edinburgh, Edinburgh, UK
- Center for Science, Teaching, and Learning, Rockville Centre, New York, USA
| | - Hady George
- School of Earth Sciences, University of Bristol, Bristol, UK
| | - Thomas R Holtz
- Department of Geology, University of Maryland, College Park, Maryland, USA
- Department of Paleobiology, National Museum of Natural History, Washington, District of Columbia, USA
| | - Darren Naish
- School of Biological Sciences, Faculty of Environment and Life Sciences, University of Southampton, Southampton, UK
| | - Douglas R Wylie
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
| | - Grant R Hurlburt
- Department of Natural History, Royal Ontario Museum, Toronto, Ontario, Canada
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15
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Xiong Y, Fan L, Chang Y, Xiao H, Lei F. Warm Temperature is Associated With Reduced Body Mass and Diversification Rates While Increasing Extinction Risks in Cold-Adapted Seabirds. GLOBAL CHANGE BIOLOGY 2024; 30:e70000. [PMID: 39670339 DOI: 10.1111/gcb.70000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 11/10/2024] [Accepted: 11/26/2024] [Indexed: 12/14/2024]
Abstract
Anthropogenic rapid warming has caused decreases in richness and body mass of birds following the metabolic theory of ecology; yet, the pervasiveness of these shifts remains controversial among different taxa. Here, by combining phylogenetic methods and fossil data, we synthesized spatial patterns of richness and body mass for 328 seabird species belonging to two groups: Procellariimorphae (PM) and non-Procellariimorphae (NPM). We found that the relationship between body mass and richness, as well as diversification rate, exhibits distinct patterns in these two groups. Ancestral state reconstruction analyses indicate that smaller PM, as opposed to NPM seabirds, evolved in warmer waters from larger ancestors and exhibited a slower diversification rate. Different ancestral climatic origins explain the reduced influence of environmental factors on richness patterns among PM compared to NPM seabirds. Furthermore, whereas NPM seabirds in high latitudes face a high extinction risk, warmer sea temperatures positively correlate with a high extinction risk among PM seabirds. Our results indicate that PM seabirds, evolving from cold waters, have reduced body mass and diversification rate, making them more vulnerable to warmer temperature.
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Affiliation(s)
- Ying Xiong
- Department of Zoology, College of Life Science, Sichuan Agricultural University, Ya'an, China
| | - Liqing Fan
- Key Laboratory of Forest Ecology in Tibet Plateau, Ministry of Education, Tibet Agricultural & Animal Husbandry University, Nyingchi, China
| | - Yongbin Chang
- Henan Engineering Research Center of Bird Collisions, Zhengzhou Normal University, Zhengzhou, China
| | - Hongtao Xiao
- Department of Zoology, College of Life Science, Sichuan Agricultural University, Ya'an, China
| | - Fumin Lei
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
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16
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Chiappe LM, Navalón G, Martinelli AG, Carvalho IDS, Miloni Santucci R, Wu YH, Field DJ. Cretaceous bird from Brazil informs the evolution of the avian skull and brain. Nature 2024; 635:376-381. [PMID: 39537887 PMCID: PMC11560842 DOI: 10.1038/s41586-024-08114-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 09/25/2024] [Indexed: 11/16/2024]
Abstract
A dearth of Mesozoic-aged, three-dimensional fossils hinders understanding of the origin of the distinctive skull and brain of modern (crown) birds1. Here we report Navaornis hestiae gen. et sp. nov., an exquisitely preserved fossil species from the Late Cretaceous of Brazil. The skull of Navaornis is toothless and large-eyed, with a vaulted cranium closely resembling the condition in crown birds; however, phylogenetic analyses recover Navaornis in Enantiornithes, a highly diverse clade of Mesozoic stem birds. Despite an overall geometry quantitatively indistinguishable from crown birds, the skull of Navaornis retains numerous plesiomorphies including a maxilla-dominated rostrum, an akinetic palate, a diapsid temporal configuration, a small cerebellum and a weakly expanded telencephalon. These archaic neurocranial traits are combined with a crown bird-like degree of brain flexion and a bony labyrinth comparable in shape to those of many crown birds but substantially larger. Altogether, the emergent cranial geometry of Navaornis shows an unprecedented degree of similarity between crown birds and enantiornithines, groups last sharing a common ancestor more than 130 million years ago2. Navaornis provides long-sought insight into the detailed cranial and endocranial morphology of stem birds phylogenetically crownward of Archaeopteryx, clarifying the pattern and timing by which the distinctive neuroanatomy of living birds was assembled.
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Affiliation(s)
- Luis M Chiappe
- Dinosaur Institute, Natural History Museum of Los Angeles County, Los Angeles, CA, USA.
| | - Guillermo Navalón
- Department of Earth Sciences, University of Cambridge, Cambridge, UK.
| | - Agustín G Martinelli
- Sección Paleontología de Vertebrados, CONICET-Museo Argentino de Ciencias Naturales Bernardino Rivadavia, Buenos Aires, Argentina
| | - Ismar de Souza Carvalho
- Instituto de Geociências, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
- Centro de Geociências, Coimbra University, Coimbra, Portugal
| | | | - Yun-Hsin Wu
- Dinosaur Institute, Natural History Museum of Los Angeles County, Los Angeles, CA, USA
| | - Daniel J Field
- Department of Earth Sciences, University of Cambridge, Cambridge, UK.
- Museum of Zoology, University of Cambridge, Cambridge, UK.
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17
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Osvath M, Němec P, Brusatte SL, Witmer LM. Thought for food: the endothermic brain hypothesis. Trends Cogn Sci 2024; 28:998-1010. [PMID: 39242238 DOI: 10.1016/j.tics.2024.08.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 08/05/2024] [Accepted: 08/06/2024] [Indexed: 09/09/2024]
Abstract
The evolution of whole-body endothermy occurred independently in dinosaurs and mammals and was associated with some of the most significant neurocognitive shifts in life's history. These included a 20-fold increase in neurons and the evolution of new brain structures, supporting similar functions in both lineages. We propose the endothermic brain hypothesis, which holds that elaborations in endotherm brains were geared towards increasing caloric intake through efficient foraging. The hypothesis is grounded in the intrinsic coupling of cognition and organismic self-maintenance. We argue that coevolution of increased metabolism and new forms of cognition should be jointly investigated in comparative studies of behaviors and brain anatomy, along with studies of fossil species. We suggest avenues for such research and highlight critical open questions.
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Affiliation(s)
- Mathias Osvath
- Department of Philosophy, Division of Cognitive Science, The Cognitive Zoology Group, Lund University, Box 192, 221 00, Lund, Sweden.
| | - Pavel Němec
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Stephen L Brusatte
- School of GeoSciences, University of Edinburgh, Grant Institute, James Hutton Road, Edinburgh EH9 3FE, UK
| | - Lawrence M Witmer
- Department of Biomedical Sciences, Heritage College of Osteopathic Medicine, Ohio Center for Ecology and Evolutionary Studies, Ohio University, Athens, OH 45701, USA
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18
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Forcellati MR, Green TL, Watanabe A. Brain shapes of large-bodied, flightless ratites (Aves: Palaeognathae) emerge through distinct developmental allometries. ROYAL SOCIETY OPEN SCIENCE 2024; 11:240765. [PMID: 39263457 PMCID: PMC11387061 DOI: 10.1098/rsos.240765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 07/27/2024] [Accepted: 07/31/2024] [Indexed: 09/13/2024]
Abstract
Comparative neuroanatomical studies have long debated the role of development in the evolution of novel and disparate brain morphologies. Historically, these studies have emphasized whether evolutionary shifts along conserved or distinct developmental allometric trends cause changes in brain morphologies. However, the degree to which interspecific differences between variably sized taxa originate through modifying developmental allometry remains largely untested. Taxa with disparate brain shapes and sizes thus allow for investigation into how developmental trends contribute to neuroanatomical diversification. Here, we examine a developmental series of large-bodied ratite birds (approx. 60-140 kg). We use three-dimensional geometric morphometrics on cephalic endocasts of common ostriches, emus and southern cassowaries and compare their developmental trajectories with those of the more modestly sized domestic chicken, previously shown to be in the same allometric grade as ratites. The results suggest that ratites and chickens exhibit disparate endocranial shapes not simply accounted for by their size differences. When shape and age are examined, chickens partly exhibit more accelerated and mature brain shapes than ratites of similar size and age. Taken together, our study indicates that disparate brain shapes between these differently sized taxa have emerged from the evolution of distinct developmental allometries, rather than simply following conserved scaling trends.
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Affiliation(s)
- Meghan R Forcellati
- Department of Ecology, Evolution, and Environmental Biology, Columbia University, New York, NY 10027, USA
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY 10024, USA
| | - Todd L Green
- Biomedical and Anatomical Sciences, New York Institute of Technology, College of Osteopathic Medicine at Arkansas State University, Jonesboro, AR 72401, USA
- Department of Anatomy, New York Institute of Technology, College of Osteopathic Medicine, Old Westbury, NY 11568, USA
| | - Akinobu Watanabe
- Department of Anatomy, New York Institute of Technology, College of Osteopathic Medicine, Old Westbury, NY 11568, USA
- Division of Paleontology, American Museum of Natural History, New York, NY 10024, USA
- Life Sciences Department, Natural History Museum, London SW7 5BD, UK
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19
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King L, Zhao Q, Dufeau DL, Kawabe S, Witmer L, Zhou CF, Rayfield EJ, Benton MJ, Watanabe A. Endocranial development in non-avian dinosaurs reveals an ontogenetic brain trajectory distinct from extant archosaurs. Nat Commun 2024; 15:7415. [PMID: 39198439 PMCID: PMC11358377 DOI: 10.1038/s41467-024-51627-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 08/13/2024] [Indexed: 09/01/2024] Open
Abstract
Modern birds possess highly encephalized brains that evolved from non-avian dinosaurs. Evolutionary shifts in developmental timing, namely juvenilization of adult phenotypes, have been proposed as a driver of head evolution along the dinosaur-bird transition, including brain morphology. Testing this hypothesis requires a sufficient developmental sampling of brain morphology in non-avian dinosaurs. In this study, we harness brain endocasts of a postnatal growth series of the ornithischian dinosaur Psittacosaurus and several other immature and mature non-avian dinosaurs to investigate how evolutionary changes to brain development are implicated in the origin of the avian brain. Using three-dimensional characterization of neuroanatomical shape across archosaurian reptiles, we demonstrate that (i) the brain of non-avian dinosaurs underwent a distinct developmental trajectory compared to alligators and crown birds; (ii) ornithischian and non-avialan theropod dinosaurs shared a similar developmental trajectory, suggesting that their derived trajectory evolved in their common ancestor; and (iii) the evolutionary shift in developmental trajectories is partly consistent with paedomorphosis underlying overall brain shape evolution along the dinosaur-bird transition; however, the heterochronic signal is not uniform across time and neuroanatomical region suggesting a highly mosaic acquisition of the avian brain form.
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Affiliation(s)
- Logan King
- Institute of Vertebrate Paleontology & Paleoanthropology, Chinese Academy of Sciences, Beijing, China.
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, UK.
| | - Qi Zhao
- Institute of Vertebrate Paleontology & Paleoanthropology, Chinese Academy of Sciences, Beijing, China
| | - David L Dufeau
- Department of Anatomy and Pathology, Marian University College of Osteopathic Medicine, Indianapolis, IN, USA
| | - Soichiro Kawabe
- Institute of Dinosaur Research, Fukui Prefectural University, Eiheiji, Fukui, Japan
- Fukui Prefectural Dinosaur Museum, Katsuyama, Fukui, Japan
| | - Lawrence Witmer
- Department of Biomedical Sciences, Ohio University Heritage College of Osteopathic Medicine, Athens, OH, USA
- Ohio Center for Ecology and Evolutionary Studies, Ohio University, Athens, OH, USA
| | - Chang-Fu Zhou
- College of Earth Science and Engineering, Shandong University of Science and Technology, Qingdao, Shandong, China
| | - Emily J Rayfield
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, UK
| | - Michael J Benton
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, UK
| | - Akinobu Watanabe
- Department of Anatomy, New York Institute of Technology College of Osteopathic Medicine, Old Westbury, NY, USA.
- Division of Paleontology, American Museum of Natural History, New York, NY, USA.
- Life Sciences Department, Natural History Museum, London, UK.
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20
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Berv JS, Singhal S, Field DJ, Walker-Hale N, McHugh SW, Shipley JR, Miller ET, Kimball RT, Braun EL, Dornburg A, Parins-Fukuchi CT, Prum RO, Winger BM, Friedman M, Smith SA. Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction. SCIENCE ADVANCES 2024; 10:eadp0114. [PMID: 39083615 PMCID: PMC11290531 DOI: 10.1126/sciadv.adp0114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Accepted: 06/28/2024] [Indexed: 08/02/2024]
Abstract
Complex patterns of genome evolution associated with the end-Cretaceous [Cretaceous-Paleogene (K-Pg)] mass extinction limit our understanding of the early evolutionary history of modern birds. Here, we analyzed patterns of avian molecular evolution and identified distinct macroevolutionary regimes across exons, introns, untranslated regions, and mitochondrial genomes. Bird clades originating near the K-Pg boundary exhibited numerous shifts in the mode of molecular evolution, suggesting a burst of genomic heterogeneity at this point in Earth's history. These inferred shifts in substitution patterns were closely related to evolutionary shifts in developmental mode, adult body mass, and patterns of metabolic scaling. Our results suggest that the end-Cretaceous mass extinction triggered integrated patterns of evolution across avian genomes, physiology, and life history near the dawn of the modern bird radiation.
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Affiliation(s)
- Jacob S. Berv
- Department of Ecology and Evolutionary Biology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
- Museum of Paleontology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
- Museum of Zoology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
| | - Sonal Singhal
- Department of Biology, California State University, Dominguez Hills, Carson, CA 90747, USA
| | - Daniel J. Field
- Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EQ, UK
- Museum of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - Nathanael Walker-Hale
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK
| | - Sean W. McHugh
- Department of Evolution, Ecology, and Population Biology, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - J. Ryan Shipley
- Department of Forest Dynamics, Swiss Federal Institute for Forest, Snow, and Landscape Research WSL, Zürcherstrasse 111 8903, Birmensdorf, Switzerland
| | - Eliot T. Miller
- Center for Avian Population Studies, Cornell Lab of Ornithology, Cornell University, Ithaca, NY 14850, USA
| | - Rebecca T. Kimball
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - Edward L. Braun
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - Alex Dornburg
- Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA
| | - C. Tomomi Parins-Fukuchi
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario M5S 3B2, Canada
| | - Richard O. Prum
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
- Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA
| | - Benjamin M. Winger
- Department of Ecology and Evolutionary Biology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
- Museum of Zoology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
| | - Matt Friedman
- Museum of Paleontology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
- Department of Earth and Environmental Sciences, University of Michigan, 1100 North University Avenue, University of Michigan, Ann Arbor, MI 48109, USA
| | - Stephen A. Smith
- Department of Ecology and Evolutionary Biology, University of Michigan, 1105 North University Avenue, Biological Sciences Building, University of Michigan, Ann Arbor, MI 48109, USA
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21
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Venditti C, Baker J, Barton RA. Co-evolutionary dynamics of mammalian brain and body size. Nat Ecol Evol 2024; 8:1534-1542. [PMID: 38977833 PMCID: PMC11310075 DOI: 10.1038/s41559-024-02451-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 05/29/2024] [Indexed: 07/10/2024]
Abstract
Despite decades of comparative studies, puzzling aspects of the relationship between mammalian brain and body mass continue to defy satisfactory explanation. Here we show that several such aspects arise from routinely fitting log-linear models to the data: the correlated evolution of brain and body mass is in fact log-curvilinear. This simultaneously accounts for several phenomena for which diverse biological explanations have been proposed, notably variability in scaling coefficients across clades, low encephalization in larger species and the so-called taxon-level problem. Our model implies a need to revisit previous findings about relative brain mass. Accounting for the true scaling relationship, we document dramatically varying rates of relative brain mass evolution across the mammalian phylogeny, and we resolve the question of whether there is an overall trend for brain mass to increase through time. We find a trend in only three mammalian orders, which is by far the strongest in primates, setting the stage for the uniquely rapid directional increase ultimately producing the computational powers of the human brain.
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Affiliation(s)
- Chris Venditti
- School of Biological Sciences, University of Reading, Reading, UK.
| | - Joanna Baker
- School of Biological Sciences, University of Reading, Reading, UK
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22
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Valone TJ. Probabilistic inference and Bayesian-like estimation in animals: Empirical evidence. Ecol Evol 2024; 14:e11495. [PMID: 38994217 PMCID: PMC11237346 DOI: 10.1002/ece3.11495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 05/10/2024] [Accepted: 05/15/2024] [Indexed: 07/13/2024] Open
Abstract
Animals often make decisions without perfect knowledge of environmental parameters like the quality of an encountered food patch or a potential mate. Theoreticians often assume animals make such decisions using a Bayesian updating process that combines prior information about the frequency distribution of resources in the environment with sample information from an encountered resource; such a process leads to decisions that maximize fitness, given the available information. I examine three aspects of empirical work that shed light on the idea that animals can make such decisions in a Bayesian-like manner. First, many animals are sensitive to variance differences in behavioral options, one metric used to characterize frequency distributions. Second, several species use information about the relative frequency of preferred versus nonpreferred items in different populations to make probabilistic inferences about samples taken from populations in a manner that results in maximizing the likelihood of obtaining a preferred reward. Third, the predictions of Bayesian models often match the behavior of individuals in two main approaches. One approach compares behavior to models that make different assumptions about how individuals estimate the quality of an environmental parameter. The patch exploitation behavior of nine species of birds and mammals has matched the predictions of Bayesian models. The other approach compares the behavior of individuals who learn, through experience, different frequency distributions of resources in their environment. The behavior of three bird species and bumblebees exploiting food patches and fruit flies selecting mates is influenced by their experience learning different frequency distributions of food and mates, respectively, in ways consistent with Bayesian models. These studies lend support to the idea that animals may combine prior and sample information in a Bayesian-like manner to make decisions under uncertainty, but additional work on a greater diversity of species is required to better understand the generality of this ability.
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Affiliation(s)
- Thomas J Valone
- Department of Biology Saint Louis University Saint Louis Missouri USA
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23
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Widrig KE, Navalón G, Field DJ. Paleoneurology of stem palaeognaths clarifies the plesiomorphic condition of the crown bird central nervous system. J Morphol 2024; 285:e21710. [PMID: 38760949 DOI: 10.1002/jmor.21710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/29/2024] [Accepted: 05/03/2024] [Indexed: 05/20/2024]
Abstract
Lithornithidae, an assemblage of volant Palaeogene fossil birds, provide our clearest insights into the early evolutionary history of Palaeognathae, the clade that today includes the flightless ratites and volant tinamous. The neotype specimen of Lithornis vulturinus, from the early Eocene (approximately 53 million years ago) of Europe, includes a partial neurocranium that has never been thoroughly investigated. Here, we describe these cranial remains including the nearly complete digital endocasts of the brain and bony labyrinth. The telencephalon of Lithornis is expanded and its optic lobes are ventrally shifted, as is typical for crown birds. The foramen magnum is positioned caudally, rather than flexed ventrally as in some crown birds, with the optic lobes, cerebellum, and foramen magnum shifted further ventrally. The overall brain shape is similar to that of tinamous, the only extant clade of flying palaeognaths, suggesting that several aspects of tinamou neuroanatomy may have been evolutionarily conserved since at least the early Cenozoic. The estimated ratio of the optic lobe's surface area relative to the total brain suggests a diurnal ecology. Lithornis may provide the clearest insights to date into the neuroanatomy of the ancestral crown bird, combining an ancestrally unflexed brain with a caudally oriented connection with the spinal cord, a moderately enlarged telencephalon, and ventrally shifted, enlarged optic lobes.
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Affiliation(s)
- Klara E Widrig
- Department of Earth Sciences, University of Cambridge, Cambridge, UK
| | - Guillermo Navalón
- Department of Earth Sciences, University of Cambridge, Cambridge, UK
| | - Daniel J Field
- Department of Earth Sciences, University of Cambridge, Cambridge, UK
- Museum of Zoology, University of Cambridge, Cambridge, UK
- Fossil Reptiles, Amphibians and Birds Section, The Natural History Museum, London, UK
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24
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Stiller J, Feng S, Chowdhury AA, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, Cracraft J, Balaban M, Mai U, Chen G, Gao R, Zhou C, Xie Y, Huang Z, Cao Z, Yan Z, Ogilvie HA, Nakhleh L, Lindow B, Morel B, Fjeldså J, Hosner PA, da Fonseca RR, Petersen B, Tobias JA, Székely T, Kennedy JD, Reeve AH, Liker A, Stervander M, Antunes A, Tietze DT, Bertelsen MF, Lei F, Rahbek C, Graves GR, Schierup MH, Warnow T, Braun EL, Gilbert MTP, Jarvis ED, Mirarab S, Zhang G. Complexity of avian evolution revealed by family-level genomes. Nature 2024; 629:851-860. [PMID: 38560995 PMCID: PMC11111414 DOI: 10.1038/s41586-024-07323-1] [Citation(s) in RCA: 52] [Impact Index Per Article: 52.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 03/15/2024] [Indexed: 04/04/2024]
Abstract
Despite tremendous efforts in the past decades, relationships among main avian lineages remain heavily debated without a clear resolution. Discrepancies have been attributed to diversity of species sampled, phylogenetic method and the choice of genomic regions1-3. Here we address these issues by analysing the genomes of 363 bird species4 (218 taxonomic families, 92% of total). Using intergenic regions and coalescent methods, we present a well-supported tree but also a marked degree of discordance. The tree confirms that Neoaves experienced rapid radiation at or near the Cretaceous-Palaeogene boundary. Sufficient loci rather than extensive taxon sampling were more effective in resolving difficult nodes. Remaining recalcitrant nodes involve species that are a challenge to model due to either extreme DNA composition, variable substitution rates, incomplete lineage sorting or complex evolutionary events such as ancient hybridization. Assessment of the effects of different genomic partitions showed high heterogeneity across the genome. We discovered sharp increases in effective population size, substitution rates and relative brain size following the Cretaceous-Palaeogene extinction event, supporting the hypothesis that emerging ecological opportunities catalysed the diversification of modern birds. The resulting phylogenetic estimate offers fresh insights into the rapid radiation of modern birds and provides a taxon-rich backbone tree for future comparative studies.
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Affiliation(s)
- Josefin Stiller
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
| | - Shaohong Feng
- Center for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China
- Innovation Center of Yangtze River Delta, Zhejiang University, Jiashan, China
| | - Al-Aabid Chowdhury
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia
| | | | - David A Duchêne
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - Qi Fang
- BGI Research, Shenzhen, China
| | - Yuan Deng
- BGI Research, Shenzhen, China
- BGI Research, Wuhan, China
| | - Alexey Kozlov
- Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany
| | - Alexandros Stamatakis
- Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany
- Institute of Computer Science, Foundation for Research and Technology Hellas, Heraklion, Greece
- Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Santiago Claramunt
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada
- Department of Natural History, Royal Ontario Museum, Toronto, Ontario, Canada
| | - Jacqueline M T Nguyen
- College of Science and Engineering, Flinders University, Adelaide, South Australia, Australia
- Australian Museum Research Institute, Sydney, New South Wales, Australia
| | - Simon Y W Ho
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia
| | - Brant C Faircloth
- Department of Biological Sciences and Museum of Natural Science, Louisiana State University, Baton Rouge, LA, USA
| | - Julia Haag
- Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany
| | - Peter Houde
- Department of Biology, New Mexico State University, Las Cruces, NM, USA
| | - Joel Cracraft
- Department of Ornithology, American Museum of Natural History, New York, NY, USA
| | - Metin Balaban
- Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA
| | - Uyen Mai
- Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
| | - Guangji Chen
- BGI Research, Wuhan, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Rongsheng Gao
- BGI Research, Wuhan, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | | | - Yulong Xie
- Center for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China
| | - Zijian Huang
- Center for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China
| | - Zhen Cao
- Department of Computer Science, Rice University, Houston, TX, USA
| | - Zhi Yan
- Department of Computer Science, Rice University, Houston, TX, USA
| | - Huw A Ogilvie
- Department of Computer Science, Rice University, Houston, TX, USA
| | - Luay Nakhleh
- Department of Computer Science, Rice University, Houston, TX, USA
| | - Bent Lindow
- Natural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark
| | - Benoit Morel
- Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany
- Institute of Computer Science, Foundation for Research and Technology Hellas, Heraklion, Greece
| | - Jon Fjeldså
- Natural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark
| | - Peter A Hosner
- Natural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - Rute R da Fonseca
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - Bent Petersen
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Centre of Excellence for Omics-Driven Computational Biodiscovery, Faculty of Applied Sciences, AIMST University, Bedong, Malaysia
| | - Joseph A Tobias
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, UK
| | - Tamás Székely
- Milner Centre for Evolution, University of Bath, Bath, UK
- ELKH-DE Reproductive Strategies Research Group, University of Debrecen, Debrecen, Hungary
| | - Jonathan David Kennedy
- Center for Macroecology, Evolution, and Climate, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - Andrew Hart Reeve
- Natural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark
| | - Andras Liker
- HUN-REN-PE Evolutionary Ecology Research Group, University of Pannonia, Veszprém, Hungary
- Behavioural Ecology Research Group, Center for Natural Sciences, University of Pannonia, Veszprém, Hungary
| | | | - Agostinho Antunes
- CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal
- Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal
| | | | - Mads F Bertelsen
- Centre for Zoo and Wild Animal Health, Copenhagen Zoo, Frederiksberg, Denmark
| | - Fumin Lei
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
- College of Life Science, University of Chinese Academy of Sciences, Beijing, China
| | - Carsten Rahbek
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Center for Macroecology, Evolution, and Climate, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Institute of Ecology, Peking University, Beijing, China
- Danish Institute for Advanced Study, University of Southern Denmark, Odense, Denmark
| | - Gary R Graves
- Center for Macroecology, Evolution, and Climate, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | | | - Tandy Warnow
- University of Illinois Urbana-Champaign, Champaign, IL, USA
| | - Edward L Braun
- Department of Biology, University of Florida, Gainesville, FL, USA
| | - M Thomas P Gilbert
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark
- University Museum, NTNU, Trondheim, Norway
| | - Erich D Jarvis
- Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA
- Howard Hughes Medical Institute, Durham, NC, USA
| | | | - Guojie Zhang
- Center for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China.
- Innovation Center of Yangtze River Delta, Zhejiang University, Jiashan, China.
- BGI Research, Wuhan, China.
- Villum Center for Biodiversity Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
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25
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Demmel Ferreira MM, Degrange FJ, Tirao GA. Brain surface morphology and ecological and macroevolutionary inferences of avian New World suboscines (Aves, Passeriformes, Tyrannides). J Comp Neurol 2024; 532:e25617. [PMID: 38629472 DOI: 10.1002/cne.25617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 03/11/2024] [Accepted: 04/02/2024] [Indexed: 04/19/2024]
Abstract
The New World suboscines (Passeriformes and Tyrannides) are one of the biggest endemic vertebrate radiations in South America, including the families Furnariidae and Tyrannidae. Avian brain morphology is a reliable proxy to study their evolution. The aim of this work is to elucidate whether the brains of these families reflect the ecological differences (e.g., feeding behavior) and to clarify macroevolutionary aspects of their neuroanatomy. Our hypotheses are as follows: Brain size is similar between both families and with other Passeriformes; brain morphology in Tyrannides is the result of the pressure of ecological factors; and brain disparity is low since they share ecological traits. Skulls of Furnariidae and Tyrannidae were micro-computed tomography-scanned, and three-dimensional models of the endocast were generated. Regression analyses were performed between brain volume and body mass. Linear and surface measurements were used to build phylomorphospaces and to calculate the amount of phylogenetic signal. Tyrannidae showed a larger brain disparity than Furnariidae, although it is not shaped by phylogeny in the Tyrannides. Furnariidae present enlarged Wulsts (eminentiae sagittales) but smaller optic lobes, while in Tyrannidae, it is the opposite. This could indicate that in Tyrannides there is a trade-off between the size of these two visual-related brain structures.
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Affiliation(s)
- María Manuela Demmel Ferreira
- Centro de Investigaciones en Ciencias de la Tierra (CICTERRA), Facultad de Ciencias Exactas, Físicas y Naturales (FCEFyN), Universidad Nacional de Córdoba (UNC), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Córdoba, Argentina
| | - Federico Javier Degrange
- Centro de Investigaciones en Ciencias de la Tierra (CICTERRA), Facultad de Ciencias Exactas, Físicas y Naturales (FCEFyN), Universidad Nacional de Córdoba (UNC), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Córdoba, Argentina
| | - Germán Alfredo Tirao
- Instituto de Física Enrique Gaviola (IFEG), Facultad de Matemática, Astronomía y Física (FaMAF), Universidad Nacional de Córdoba (UNC), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Córdoba, Argentina
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26
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Knoll F, Ishikawa A, Kawabe S. A proxy for brain-to-endocranial cavity index in non-neornithean dinosaurs and other extinct archosaurs. J Comp Neurol 2024; 532:e25597. [PMID: 38588163 DOI: 10.1002/cne.25597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 10/30/2023] [Accepted: 02/09/2024] [Indexed: 04/10/2024]
Abstract
Although the brain fills nearly the entire cranial cavity in birds, it can occupy a small portion of it in crocodilians. The lack of data regarding the volumetric correspondence between the brain and the cranial cavity hampers thorough assessments of the degree of encephalization in non-neornithean dinosaurs and other extinct archosaurs and, consequently, informed inferences regarding their cognitive capacities. Existing data suggest that, across extant archosaurs, the degree of endocranial doming and the volume of intracranial nonneural components are inversely related. We build upon this information to develop an equation relating these two anatomical features in non-neornithean dinosaurs and other extinct archosaurs. We rely on measurements of the endocast doming and brain-to-endocranial cavity (BEC) index in extant relatives of non-neornithean dinosaurs, namely, the crurotarsans Caiman crocodilus, Crocodylus niloticus, and Crocodylus porosus; the paleognaths Struthio camelus and Apteryx mantelli; and the fowl Macrocephalon maleo, Gallus gallus, Meleagris gallopavo, Phasianus colchicus, and Anas platyrhynchos. Applying the equation to representative endocasts from major clades of dinosaurs, we found that BEC varies from about 0.6 in ceratopsians and thyreophorans to around 0.7 in ornithopods, pachycephalosaurians, sauropods, and theropods. We, therefore, warn against the use of a catch-all value, like 0.5, and instead encourage refinement in the adoption of BEC across archosaurs.
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Affiliation(s)
- Fabien Knoll
- Departamento de Paleobiología, Museo Nacional de Ciencias Naturales-CSIC, Madrid, Spain
| | - Asato Ishikawa
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Eiheiji, Japan
| | - Soichiro Kawabe
- Institute of Dinosaur Research, Fukui Prefectural University, Eiheiji, Japan
- Fukui Prefectural Dinosaur Museum, Katsuyama, Japan
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27
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Yu C, Watanabe A, Qin Z, Logan King J, Witmer LM, Ma Q, Xu X. Avialan-like brain morphology in Sinovenator (Troodontidae, Theropoda). Commun Biol 2024; 7:168. [PMID: 38341492 PMCID: PMC10858883 DOI: 10.1038/s42003-024-05832-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Accepted: 01/18/2024] [Indexed: 02/12/2024] Open
Abstract
Many modifications to the skull and brain anatomy occurred along the lineage encompassing non-avialan theropod dinosaurs and modern birds. Anatomical changes to the endocranium include an enlarged endocranial cavity, relatively larger optic lobes that imply elevated visual acuity, and proportionately smaller olfactory bulbs that suggest reduced olfactory capacity. Here, we use micro-computed tomographic (μCT) imaging to reconstruct the endocranium and its neuroanatomical features from an exceptionally well-preserved skull of Sinovenator changii (Troodontidae, Theropoda). While its overall morphology resembles the typical endocranium of other troodontids, Sinovenator also exhibits unique endocranial features that are similar to other paravian taxa and non-maniraptoran theropods. Landmark-based geometric morphometric analysis on endocranial shape of non-avialan and avialan dinosaurs points to the overall brain morphology of Sinovenator most closely resembling that of Archaeopteryx, thus indicating acquisition of avialan-grade brain morphology in troodontids and wide existence of such architecture in Maniraptora.
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Affiliation(s)
- Congyu Yu
- State Key Laboratory of Oil and Gas Reservoir Geology and Exploitation & Institute of Sedimentary Geology, Chengdu University of Technology, Chengdu, 610059, China
- Key Laboratory of Deep-time Geography and Environment Reconstruction and Applications of Ministry of Natural Resources, Chengdu University of Technology, Chengdu, 610059, China
- Division of Paleontology, American Museum of Natural History, New York, NY, 10024, USA
| | - Akinobu Watanabe
- Division of Paleontology, American Museum of Natural History, New York, NY, 10024, USA
- Department of Anatomy, New York Institute of Technology College of Osteopathic Medicine, Old Westbury, NY, 11568, USA
- Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK
| | - Zichuan Qin
- Palaeontology Research Group, School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, UK
| | - J Logan King
- Palaeontology Research Group, School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, UK
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China
| | - Lawrence M Witmer
- Department of Biomedical Sciences, Heritage College of Osteopathic Medicine, Ohio Center for Ecological and Evolutionary Studies, Ohio University, Athens, OH, 45701, USA
| | - Qingyu Ma
- Chongqing Laboratory of Geological Heritage Protection and Research, No. 208 Hydrogeological and Engineering Geological Team, Chongqing Bureau of Geology and Minerals Exploration, Chongqing, 401121, China
| | - Xing Xu
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China.
- Centre for Vertebrate Evolutionary Biology, Yunnan University, Kunming, 650091, China.
- Paleontological Museum of Liaoning, Shenyang Normal University, Liaoning Province, 253 North Huanghe Street, Shenyang, 110034, China.
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Jensen TR, Zeiträg C, Osvath M. The selfish preen: absence of allopreening in Palaeognathae and its socio-cognitive implications. Anim Cogn 2023; 26:1467-1476. [PMID: 37256500 PMCID: PMC10442270 DOI: 10.1007/s10071-023-01794-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 05/21/2023] [Accepted: 05/22/2023] [Indexed: 06/01/2023]
Abstract
Preening behaviours are widespread in extant birds. While most birds appear to autopreen (self-directed preening), allopreening (preening directed at conspecifics) seems to have emerged only in certain species, but across many families. Allopreening has been hypothesised to reinforce mutual relationships and cooperation between individuals, and to underpin various socio-cognitive abilities. Palaeognathae is a bird group exhibiting neurocognitively plesiomorphic traits compared to other birds. They share many features with non-avian paravian dinosaurs and are thus important for the study of cognitive evolution in birds. Despite this, and the important correlation of allopreening with many complicated social behaviours, allopreening has not been systematically studied in Palaeognathae. Therefore, we examined the preening behaviours in four species of palaeognaths: common ostriches (Struthio camelus), greater rheas (Rhea americana), emus (Dromaius novaehollandiae), and elegant crested tinamous (Eudromia elegans). We compared findings with common ravens (Corvus corax), a neognath species known for its allopreening and complex social cognition. We found autopreening, but no allopreening, in the palaeognath species, while both autopreening and allopreening was found in common ravens. The absence of allopreening in Palaeognathae suggests an emergence of this behaviour within Neognathae. We contextualise our results in relation to the socio-cognitive underpinnings of allopreening and its implications for the understanding of the evolution of socio-cognitive abilities in non-avian paravian dinosaurs and early birds.
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Affiliation(s)
- Thomas Rejsenhus Jensen
- Department of Philosophy, Cognitive Science, Cognitive Zoology Group, Lund University, Lund, Sweden.
| | - Claudia Zeiträg
- Department of Philosophy, Cognitive Science, Cognitive Zoology Group, Lund University, Lund, Sweden
| | - Mathias Osvath
- Department of Philosophy, Cognitive Science, Cognitive Zoology Group, Lund University, Lund, Sweden
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29
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Watanabe A, Marshall SS, Gignac PM. Dumbbell-shaped brains of Polish crested chickens as a model system for the evolution of novel brain morphologies. J Anat 2023; 243:421-430. [PMID: 37165612 PMCID: PMC10439378 DOI: 10.1111/joa.13883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 03/28/2023] [Accepted: 04/27/2023] [Indexed: 05/12/2023] Open
Abstract
The evolutionary history of vertebrates is replete with emergence of novel brain morphologies, including the origin of the human brain. Existing model organisms and toolkits for investigating drivers of neuroanatomical innovations have largely proceeded on mammals. As such, a compelling non-mammalian model system would facilitate our understanding of how unique brain morphologies evolve across vertebrates. Here, we present the domestic chicken breed, white crested Polish chickens, as an avian model for investigating how novel brain morphologies originate. Most notably, these crested chickens exhibit cerebral herniation from anterodorsal displacement of the telencephalon, which results in a prominent protuberance on the dorsal aspect of the skull. We use a high-density geometric morphometric approach on cephalic endocasts to characterize their brain morphology. Compared with standard white Leghorn chickens (WLCs) and modern avian diversity, the results demonstrate that crested chickens possess a highly variable and unique overall brain configuration. Proportional sizes of neuroanatomical regions are within the observed range of extant birds sampled in this study, but Polish chickens differ from WLCs in possessing a relatively larger cerebrum and smaller cerebellum and medulla. Given their accessibility, phylogenetic proximity, and unique neuroanatomy, we propose that crested breeds, combined with standard chickens, form a promising comparative system for investigating the emergence of novel brain morphologies.
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Affiliation(s)
- Akinobu Watanabe
- Department of AnatomyNew York Institute of Technology College of Osteopathic MedicineOld WestburyNew YorkUSA
- Division of PaleontologyAmerican Museum of Natural HistoryNew YorkNew YorkUSA
- Department of Life SciencesNatural History MuseumLondonUK
| | - Sylvia S. Marshall
- Department of AnatomyNew York Institute of Technology College of Osteopathic MedicineOld WestburyNew YorkUSA
| | - Paul M. Gignac
- Division of PaleontologyAmerican Museum of Natural HistoryNew YorkNew YorkUSA
- Department of Cellular and Molecular MedicineUniversity of Arizona College of MedicineTucsonArizonaUSA
- MicroCT Imaging Consortium for Research and OutreachUniversity of ArkansasFayettevilleArkansasUSA
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Cerio DG, Llera Martín CJ, Hogan AVC, Balanoff AM, Watanabe A, Bever GS. Differential growth of the adductor muscles, eyeball, and brain in the chick Gallus gallus with comments on the fossil record of stem-group birds. J Morphol 2023; 284:e21622. [PMID: 37585232 DOI: 10.1002/jmor.21622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 05/19/2023] [Accepted: 06/01/2023] [Indexed: 08/17/2023]
Abstract
The avian head is unique among living reptiles in its combination of relatively large brain and eyes, coupled with relatively small adductor jaw muscles. These derived proportions lend themselves to a trade-off hypothesis, wherein adductor size was reduced over evolutionary time as a means (or as a consequence) of neurosensory expansion. In this study, we examine this evolutionary hypothesis through the lens of development by describing the jaw-adductor anatomy of developing chickens, Gallus gallus, and comparing the volumetric expansion of these developing muscles with growth trajectories of the brain and eye. Under the trade-off hypothesis, we predicted that the jaw muscles would grow with negative allometry relative to brain and eyes, and that osteological signatures of a relatively large adductor system, as found in most nonavian dinosaurs, would be differentially expressed in younger chicks. Results did not meet these expectations, at least not generally, with muscle growth exhibiting positive allometry relative to that of brain and eye. We propose three, nonmutually exclusive explanations: (1) these systems do not compete for space, (2) these systems competed for space in the evolutionary past, and growth of the jaw muscles was truncated early in development (paedomorphosis), and (3) trade-offs in developmental investment in these systems are limited temporally to the perinatal period. These explanations are considered in light of the fossil record, and most notably the skull of the stem bird Ichthyornis, which exhibits an interesting combination of plesiomorphically large adductor chamber and apomorphically large brain.
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Affiliation(s)
- Donald G Cerio
- Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA
| | - Catherine J Llera Martín
- Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA
| | - Aneila V C Hogan
- Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA
| | - Amy M Balanoff
- Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA
- Department of Psychological and Brain Sciences, Johns Hopkins University, Baltimore, Maryland, USA
| | - Akinobu Watanabe
- Department of Anatomy, New York Institute of Technology College of Osteopathic Medicine, Old Westbury, New York, USA
- Division of Paleontology, American Museum of Natural History, New York City, New York, USA
- Life Sciences Department, Natural History Museum, London, UK
| | - Gabriel S Bever
- Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA
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Dickinson E, Young MW, Tanis D, Granatosky MC. Patterns and Factors Influencing Parrot (Order: Psittaciformes) Success in Establishing Thriving Naturalized Populations within the Contiguous United States. Animals (Basel) 2023; 13:2101. [PMID: 37443899 DOI: 10.3390/ani13132101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 06/20/2023] [Accepted: 06/21/2023] [Indexed: 07/15/2023] Open
Abstract
Parrots (Order: Psittaciformes) represent one of the most striking and ecomorphologically diverse avian clades, spanning more than two orders of magnitude in body size with populations occupying six continents. The worldwide diaspora of parrots is largely due to the pet trade, driven by human desire for bright, colorful, and intelligent animals as companions. Some introduced species have aptly inserted themselves into the local ecosystem and established successful breeding colonies all around the globe. Notably, the United States is home to several thriving populations of introduced species including red-masked parakeets (Psittacara erythrogenys), monk parakeets (Myiopsitta monachus), nanday conures (Aratinga nenday), and red-crowned amazons (Amazona viridigenalis). Their incredible success globally begs the question as to how these birds adapt so readily to novel environments. In this commentary, we trace parrots through evolutionary history, contextualize existent naturalized parrot populations within the contiguous United States, and provide a phylogenetic regression analysis of body mass and brain size based on success in establishing breeding populations. The propensity for a parrot species to become established appears to be phylogenetically driven. Notably, parrots in the family Cacatuidae and Neotropical Pyrrhua appear to be poor at establishing themselves in the United States once released. Although brain size among Psittaciformes did not show a significant impact on successful breeding in the continental United States, we propose that the success of parrots can be attributed to their charismatic nature, significant intelligence relative to other avian lineages, and behavioral flexibility.
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Affiliation(s)
- Edwin Dickinson
- Department of Anatomy, College of Osteopathic Medicine, New York Institute of Technology, Old Westbury, NY 11568, USA
| | - Melody W Young
- Department of Anatomy, College of Osteopathic Medicine, New York Institute of Technology, Old Westbury, NY 11568, USA
| | - Daniel Tanis
- Department of Anatomy, College of Osteopathic Medicine, New York Institute of Technology, Old Westbury, NY 11568, USA
| | - Michael C Granatosky
- Department of Anatomy, College of Osteopathic Medicine, New York Institute of Technology, Old Westbury, NY 11568, USA
- Center for Biomedical Innovation, College of Osteopathic Medicine, New York Institute of Technology, Old Westbury, NY 11568, USA
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Reiner A. Could theropod dinosaurs have evolved to a human level of intelligence? J Comp Neurol 2023; 531:975-1006. [PMID: 37029483 PMCID: PMC10106414 DOI: 10.1002/cne.25458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 01/05/2023] [Accepted: 01/11/2023] [Indexed: 04/09/2023]
Abstract
Noting that some theropod dinosaurs had large brains, large grasping hands, and likely binocular vision, paleontologist Dale Russell suggested that a branch of these dinosaurs might have evolved to a human intelligence level, had dinosaurs not become extinct. I offer reasons why the likely pallial organization in dinosaurs would have made this improbable, based on four assumptions. First, it is assumed that achieving human intelligence requires evolving an equivalent of the about 200 functionally specialized cortical areas characteristic of humans. Second, it is assumed that dinosaurs had an avian nuclear type of pallial organization, in contrast to the mammalian cortical organization. Third, it is assumed that the interactions between the different neuron types making up an information processing unit within pallium are critical to its role in analyzing information. Finally, it is assumed that increasing axonal length between the neuron sets carrying out this operation impairs its efficacy. Based on these assumptions, I present two main reasons why dinosaur pallium might have been unable to add the equivalent of 200 efficiently functioning cortical areas. First, a nuclear pattern of pallial organization would require increasing distances between the neuron groups corresponding to the separate layers of any given mammalian cortical area, as more sets of nuclei equivalent to a cortical area are interposed between the existing sets, increasing axon length and thereby impairing processing efficiency. Second, because of its nuclear organization, dinosaur pallium could not reduce axon length by folding to bring adjacent areas closer together, as occurs in cerebral cortex.
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Affiliation(s)
- Anton Reiner
- Department of Anatomy and Neurobiology, University of Tennessee Health Science Center, Memphis, Tennessee, USA
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33
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Zeiträg C, Reber SA, Osvath M. Gaze following in Archosauria-Alligators and palaeognath birds suggest dinosaur origin of visual perspective taking. SCIENCE ADVANCES 2023; 9:eadf0405. [PMID: 37205749 DOI: 10.1126/sciadv.adf0405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 04/17/2023] [Indexed: 05/21/2023]
Abstract
Taking someone else's visual perspective marks an evolutionary shift in the formation of advanced social cognition. It enables using others' attention to discover otherwise hidden aspects of the surroundings and is foundational for human communication and understanding of others. Visual perspective taking has also been found in some other primates, a few songbirds, and some canids. However, despite its essential role for social cognition, visual perspective taking has only been fragmentedly studied in animals, leaving its evolution and origins uncharted. To begin to narrow this knowledge gap, we investigated extant archosaurs by comparing the neurocognitively least derived extant birds-palaeognaths-with the closest living relatives of birds, the crocodylians. In a gaze following paradigm, we showed that palaeognaths engage in visual perspective taking and grasp the referentiality of gazes, while crocodylians do not. This suggests that visual perspective taking originated in early birds or nonavian dinosaurs-likely earlier than in mammals.
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Affiliation(s)
- Claudia Zeiträg
- Department of Philosophy and Cognitive Science, Lund University, Lund, Sweden
| | - Stephan A Reber
- Department of Philosophy and Cognitive Science, Lund University, Lund, Sweden
| | - Mathias Osvath
- Department of Philosophy and Cognitive Science, Lund University, Lund, Sweden
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Liu Y, Jiang Y, Xu J, Liao W. Evolution of Avian Eye Size Is Associated with Habitat Openness, Food Type and Brain Size. Animals (Basel) 2023; 13:ani13101675. [PMID: 37238105 DOI: 10.3390/ani13101675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 05/14/2023] [Accepted: 05/16/2023] [Indexed: 05/28/2023] Open
Abstract
The eye is the primary sensory organ that obtains information from the ecological environments and specifically bridges the brain with the extra environment. However, the coevolutionary relationships between eye size and ecological factors, behaviours and brain size in birds remain poorly understood. Here, we investigate whether eye size evolution is associated with ecological factors (e.g., habitat openness, food type and foraging habitat), behaviours (e.g., migration and activity pattern) and brain size among 1274 avian species using phylogenetically controlled comparative analyses. Our results indicate that avian eye size is significantly associated with habitat openness, food type and brain size. Species living in dense habitats and consuming animals exhibit larger eye sizes compared to species living in open habitats and consuming plants, respectively. Large-brained birds tend to possess larger eyes. However, migration, foraging habitat and activity pattern were not found to be significantly associated with eye size in birds, except for nocturnal birds having longer axial lengths than diurnal ones. Collectively, our results suggest that avian eye size is primarily influenced by light availability, food need and cognitive ability.
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Affiliation(s)
- Yating Liu
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Ying Jiang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Jiliang Xu
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Wenbo Liao
- Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal University, Nanchong 637009, China
- Key Laboratory of Artificial Propagation and Utilization in Anurans of Nanchong City, China West Normal University, Nanchong 637009, China
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35
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Pourmasumi S, Kounis NG, Naderi M, Hosseinisadat R, Khoradmehr A, Fagheirelahee N, Kouni SN, de Gregorio C, Dousdampanis P, Mplani V, Michalaki MA, Plotas P, Assimakopoulos S, Gogos C, Aidonidis G, Roditis P, Matsas N, Velissaris D, Calogiuri G, Hung MY, Koniari I. Effects of COVID-19 Infection and Vaccination on the Female Reproductive System: A Narrative Review. Balkan Med J 2023; 40:153-164. [PMID: 37114907 PMCID: PMC10175880 DOI: 10.4274/balkanmedj.galenos.2023.2023-3-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 04/06/2023] [Indexed: 04/29/2023] Open
Abstract
Several studies and research papers have been published to elucidate and understand the mechanism of the coronavirus disease 2019 (COVID-19) pandemic and its long-term effects on the human body. COVID-19 affects a number of organs, including the female reproductive system. However, less attention has been given to the effects of COVID-19 on the female reproductive system due to their low morbidity. The results of studies investigating the relationship between COVID-19 infection and ovarian function in women of reproductive age have shown the harmless involvement of COVID-19 infection. Several studies have reported the involvement of COVID-19 infection in oocyte quality, ovarian function, and dysfunctions in the uterine endometrium and the menstrual cycle. The findings of these studies indicate that COVID-19 infection negatively affects the follicular microenvironment and dysregulate ovarian function. Although the COVID-19 pandemic and female reproductive health have been studied in humans and animals, very few studies have examined how COVID-19 affects the female reproductive system. The objective of this review is to summarize the current literature and categorize the effects of COVID-19 on the female reproductive system, including the ovaries, uterus, and hormonal profiles. The effects on oocyte maturation, oxidative stress, which causes chromosomal instability and apoptosis in ovaries, in vitro fertilization cycle, high-quality embryos, premature ovarian insufficiency, ovarian vein thrombosis, hypercoagulable state, women’s menstrual cycle, the hypothalamus-pituitary-ovary axis, and sex hormones, including estrogen, progesterone, and the anti-Müllerian hormone, are discussed in particular.
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Affiliation(s)
- Soheila Pourmasumi
- Social Determinants of Health Research Center, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
- Clinical Research Development Unit, Ali-Ibn Abi-Talib Hospital, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - Nicholas G. Kounis
- Department of Internal Medicine, Division of Cardiology, University of Patras Medical School, Patras, Greece
| | - Monavar Naderi
- Knowledge and Information Science, Vice Chancellor for Science and Technology, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - Robabe Hosseinisadat
- Department of Obstetrics and Gynecology, Faculty of Medicine, Kerman University of Medical Sciences, Kerman, Iran
| | - Arezoo Khoradmehr
- The Persian Gulf Marine Biotechnology Research Center, The Persian Gulf Biomedical Sciences Research Institute, Bushehr University of Medical Sciences, Bushehr, Iran
| | - Niloofar Fagheirelahee
- Department of Anatomy, Faculty of Medicine, Kurdistan University of Medical Sciences, Sanandaj, Iran
| | | | - Cesare de Gregorio
- Department of Clinical and Experimental Medicine, University of Messina Medical School, Messina, Italy
| | | | - Virginia Mplani
- Intensive Care Unit, Patras University Hospital, Patras, Greece
| | - Marina A. Michalaki
- Department of Internal Medicine, Division of Endocrinology, Fculty of Health Sciences, University of Patras, Patras, Greece
| | | | - Stelios Assimakopoulos
- Department of Internal Medicine, Division of Infectious Diseases, University of Patras Medical School, Patras, Greece
| | - Christos Gogos
- COVID-19 Unit, Papageorgiou General Hospital, Thessaloniki, Greece
| | | | - Pavlos Roditis
- Department of Cardiology, Mamatsio Kozanis General Hospital, Kozani, Greece
| | | | | | - Gianfranco Calogiuri
- Pneumonology Department, Civil Hospital “Ninetto Melli”, Pietro Vernoti, Brindisi, Italy
- Department of Internal Medicine, Immunology and Infectious Diseases, Section of Allergology and Clinical Immunology, University of Bari Medical School, Bari, Italy
| | - Ming-Yow Hung
- Division of Cardiology, Department of Internal Medicine, Shuang Ho Hospital, Taipei Medical University, New Taipei City, Taiwan
- Division of Cardiology, Department of Internal Medicine, School of Medicine, College of Medicine, Taipei Medical University, Taipei, Taiwan
- Taipei Heart Institute, Taipei Medical University, Taipei, Taiwan
| | - Ioanna Koniari
- Departmentof Cardiology, Liverpool Heart and Chest Hospital, Liverpool, UK
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36
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Extractive foraging behaviour in woodpeckers evolves in species that retain a large ancestral brain. Anim Behav 2023. [DOI: 10.1016/j.anbehav.2023.02.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
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37
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Akeda T, Fujiwara SI. Coracoid strength as an indicator of wing-beat propulsion in birds. J Anat 2023; 242:436-446. [PMID: 36380603 PMCID: PMC9919476 DOI: 10.1111/joa.13788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 10/15/2022] [Accepted: 10/16/2022] [Indexed: 11/17/2022] Open
Abstract
Birds generate a propulsive force by flapping their wings. They use this propulsive force for various locomotion styles, such as aerodynamic flight, wing-paddle swimming and wing-assisted incline running. It is therefore important to reveal the origin of flapping ability in the evolution from theropod dinosaurs to birds. However, there are no quantitative indices to reconstruct the flapping abilities of extinct forms based on their skeletal morphology. This study compares the section modulus of the coracoid relative to body mass among various extant birds to test whether the index is correlated with flapping ability. According to a survey of 220 historical bird specimens representing 209 species, 180 genera, 83 families and 30 orders, the section modulus of the coracoid relative to body mass in non-flapping birds was significantly smaller than that of flapping birds. This indicates that coracoid strength in non-flapping birds is deemphasised, whereas in flapping birds the strength is emphasised to withstand the contractile force produced by powerful flapping muscles, such as the m. pectoralis and m. supracoracoideus. Therefore, the section modulus of the coracoid is expected to be a powerful tool to reveal the origin of powered flight in birds.
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Affiliation(s)
- Takumi Akeda
- Department of Earth and Planetary Sciences, Nagoya University, Nagoya, Japan
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38
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Pan SK, Wang DP, Zhang XH, Zhan XJ, Zhang XH, Zhan XJ, 中国科学院中英生物复杂性研究联合实验室, 北京 100101, 中国, 中国科学院大学, 北京 100149, 中国, 中国科学院动物进化和遗传卓越中心, 云南 昆明 650223, 中国, Cardiff University - Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing 100101, China, University of the Chinese Academy of Sciences, Beijing 100049, China, Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan 650223, China. Smarter birds, smaller eggs, and less parental care time. Zool Res 2023; 44:98-100. [PMID: 36419376 PMCID: PMC9841185 DOI: 10.24272/j.issn.2095-8137.2022.283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Affiliation(s)
- Sheng-Kai Pan
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China,Cardiff University - Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Dai-Ping Wang
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China,University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Xiao-Hang Zhang
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China,University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Xiang-Jiang Zhan
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China,Cardiff University - Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing 100101, China,University of the Chinese Academy of Sciences, Beijing 100049, China,Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan 650223, China,E-mail:
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Herculano-Houzel S. Theropod dinosaurs had primate-like numbers of telencephalic neurons. J Comp Neurol 2023; 531:962-974. [PMID: 36603059 DOI: 10.1002/cne.25453] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 12/05/2022] [Accepted: 12/15/2022] [Indexed: 01/07/2023]
Abstract
Understanding the neuronal composition of the brains of dinosaurs and other fossil amniotes would offer fundamental insight into their behavioral and cognitive capabilities, but brain tissue is only rarely fossilized. However, when the bony brain case is preserved, the volume and therefore mass of the brain can be estimated with computer tomography; and if the scaling relationship between brain mass and numbers of neurons for the clade is known, that relationship can be applied to estimate the neuronal composition of the brain. Using a recently published database of numbers of neurons in the telencephalon of extant sauropsids (birds, squamates, and testudines), here I show that the neuronal scaling rules that apply to these animals can be used to infer the numbers of neurons that composed the telencephalon of dinosaur, pterosaur, and other fossil sauropsid species. The key to inferring numbers of telencephalic neurons in these species is first using the relationship between their estimated brain and body mass to determine whether bird-like (endothermic) or squamate-like (ectothermic) rules apply to each fossil sauropsid species. This procedure shows that the notion of "mesothermy" in dinosaurs is an artifact due to the mixing of animals with bird-like and squamate-like scaling, and indicates that theropods such as Tyrannosaurus and Allosaurus were endotherms with baboon- and monkey-like numbers of telencephalic neurons, respectively, which would make these animals not only giant but also long-lived and endowed with flexible cognition, and thus even more magnificent predators than previously thought.
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Affiliation(s)
- Suzana Herculano-Houzel
- Department of Psychology, Vanderbilt University, Nashville, Tennessee, USA.,Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA.,Vanderbilt Brain Institute, Vanderbilt University, Nashville, Tennessee, USA
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Hardie JL, Cooney CR. Sociality, ecology and developmental constraints predict variation in brain size across birds. J Evol Biol 2023; 36:144-155. [PMID: 36357968 PMCID: PMC10100238 DOI: 10.1111/jeb.14117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 09/06/2022] [Accepted: 09/23/2022] [Indexed: 11/12/2022]
Abstract
Conflicting theories have been proposed to explain variation in relative brain size across the animal kingdom. Ecological theories argue that the cognitive demands of seasonal or unpredictable environments have selected for increases in relative brain size, whereas the 'social brain hypothesis' argues that social complexity is the primary driver of brain size evolution. Here, we use a comparative approach to test the relative importance of ecology (diet, foraging niche and migration), sociality (social bond, cooperative breeding and territoriality) and developmental mode in shaping brain size across 1886 bird species. Across all birds, we find a highly significant effect of developmental mode and foraging niche on brain size, suggesting that developmental constraints and selection for complex motor skills whilst foraging generally imposes important selection on brain size in birds. We also find effects of social bonding and territoriality on brain size, but the direction of these effects do not support the social brain hypothesis. At the same time, we find extensive heterogeneity among major avian clades in the relative importance of different variables, implying that the significance of particular ecological and social factors for driving brain size evolution is often clade- and context-specific. Overall, our results reveal the important and complex ways in which ecological and social selection pressures and developmental constraints shape brain size evolution across birds.
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Affiliation(s)
- Jasmine L Hardie
- Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield, UK
| | - Christopher R Cooney
- Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield, UK
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41
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Rössler T, Auersperg AM. Recent developments in parrot cognition: a quadrennial update. Anim Cogn 2023; 26:199-228. [PMID: 36547738 PMCID: PMC9877086 DOI: 10.1007/s10071-022-01733-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 12/02/2022] [Accepted: 12/06/2022] [Indexed: 12/24/2022]
Abstract
Psittacines, along with corvids, are commonly referred to as 'feathered apes' due to their advanced cognitive abilities. Until rather recently, the research effort on parrot cognition was lagging behind that on corvids, however current developments show that the number of parrot studies is steadily increasing. In 2018, M. L. Lambert et al. provided a comprehensive review on the status of the most important work done so far in parrot and corvid cognition. Nevertheless, only a little more than 4 years after this publication, more than 50 new parrot studies have been published, some of them chartering completely new territory. On the 25th anniversary of Animal Cognition we think this warrants a detailed review of parrot cognition research over the last 4 years. We aim to capture recent developments and current trends in this rapidly expanding and diversifying field.
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Affiliation(s)
- Theresa Rössler
- Messerli Research Institute, University of Veterinary Medicine Vienna, Medical University Vienna, University of Vienna, Vienna, Austria ,grid.10420.370000 0001 2286 1424Department of Cognitive Biology, University of Vienna, Vienna, Austria
| | - Alice M. Auersperg
- Messerli Research Institute, University of Veterinary Medicine Vienna, Medical University Vienna, University of Vienna, Vienna, Austria
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42
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The endocast of the insular and extinct Sylviornis neocaledoniae (Aves, Galliformes), reveals insights into its sensory specializations and its twilight ecology. Sci Rep 2022; 12:21185. [PMID: 36477415 PMCID: PMC9729198 DOI: 10.1038/s41598-022-14829-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 06/13/2022] [Indexed: 12/12/2022] Open
Abstract
Sylviornis neocaledoniae (Galliformes, Sylviornithidae), a recently extinct bird of New-Caledonia (Galliformes, Sylviornithidae) is the largest galliform that ever lived and one of the most enigmatic birds in the world. Herein, for the first time, we analyze its neuroanatomy that sheds light on its lifestyle, its brain shape and patterns being correlated to neurological functions. Using morphometric methods, we quantified the endocranial morphology of S. neocaledoniae and compared it with extinct and extant birds in order to obtain ecological and behavioral information about fossil birds. Sylviornis neocaledoniae exhibited reduced optic lobes, a condition also observed in nocturnal taxa endemic to predator-depauperate islands, such as Elephant birds. Functional interpretations suggest that S. neocaledoniae possessed a well-developed somatosensorial system and a good sense of smell in addition to its specialized visual ability for low light conditions, presumably for locating its food. We interpret these results as evidence for a crepuscular lifestyle in S. neocaledoniae.
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Zeiträg C, Jensen TR, Osvath M. Gaze following: A socio-cognitive skill rooted in deep time. Front Psychol 2022; 13:950935. [PMID: 36533020 PMCID: PMC9756811 DOI: 10.3389/fpsyg.2022.950935] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 10/07/2022] [Indexed: 11/07/2023] Open
Abstract
Social gaze has received much attention in social cognition research in both human and non-human animals. Gaze following appears to be a central skill for acquiring social information, such as the location of food and predators, but can also draw attention to important social interactions, which in turn promotes the evolution of more complex socio-cognitive processes such as theory of mind and social learning. In the past decades, a large number of studies has been conducted in this field introducing differing methodologies. Thereby, various factors influencing the results of gaze following experiments have been identified. This review provides an overview of the advances in the study of gaze following, but also highlights some limitations within the research area. The majority of gaze following studies on animals have focused on primates and canids, which limits evolutionary interpretations to only a few and closely related evolutionary lineages. This review incorporates new insights gained from previously understudied taxa, such as fishes, reptiles, and birds, but it will also provide a brief outline of mammal studies. We propose that the foundations of gaze following emerged early in evolutionary history. Basic, reflexive co-orienting responses might have already evolved in fishes, which would explain the ubiquity of gaze following seen in the amniotes. More complex skills, such as geometrical gaze following and the ability to form social predictions based on gaze, seem to have evolved separately at least two times and appear to be correlated with growing complexity in brain anatomy such as increased numbers of brain neurons. However, more studies on different taxa in key phylogenetic positions are needed to better understand the evolutionary history of this fundamental socio-cognitive skill.
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Affiliation(s)
- Claudia Zeiträg
- Department of Philosophy and Cognitive Science, Lund University, Lund, Sweden
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44
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Shilovsky GA, Putyatina TS, Markov AV. Evolution of Longevity as a Species-Specific Trait in Mammals. BIOCHEMISTRY. BIOKHIMIIA 2022; 87:1579-1599. [PMID: 36717448 DOI: 10.1134/s0006297922120148] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
From the evolutionary point of view, the priority problem for an individual is not longevity, but adaptation to the environment associated with the need for survival, food supply, and reproduction. We see two main vectors in the evolution of mammals. One is a short lifespan and numerous offspring ensuring reproductive success (r-strategy). The other one is development of valuable skills in order compete successfully (K-strategy). Species with the K-strategy should develop and enhance specific systems (anti-aging programs) aimed at increasing the reliability and adaptability, including lifespan. These systems are signaling cascades that provide cell repair and antioxidant defense. Hence, any arbitrarily selected long-living species should be characterized by manifestation to a different extent of the longevity-favoring traits (e.g., body size, brain development, sociality, activity of body repair and antioxidant defense systems, resistance to xenobiotics and tumor formation, presence of neotenic traits). Hereafter, we will call a set of such traits as the gerontological success of a species. Longevity is not equivalent to the evolutionary or reproductive success. This difference between these phenomena reaches its peak in mammals due to the development of endothermy and cephalization associated with the cerebral cortex expansion, which leads to the upregulated production of oxidative radicals by the mitochondria (and, consequently, accelerated aging), increase in the number of non-dividing differentiated cells, accumulation of the age-related damage in these cells, and development of neurodegenerative diseases. The article presents mathematical indicators used to assess the predisposition to longevity in different species (including the standard mortality rate and basal metabolic rate, as well as their derivatives). The properties of the evolution of mammals (including the differences between modern mammals and their ancestral forms) are also discussed.
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Affiliation(s)
- Gregory A Shilovsky
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119234, Russia. .,Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, 127051, Russia
| | - Tatyana S Putyatina
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119234, Russia
| | - Alexander V Markov
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119234, Russia
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45
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Schmitt CJ, Edwards SV. Passerine birds. Curr Biol 2022; 32:R1149-R1154. [DOI: 10.1016/j.cub.2022.08.061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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46
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Navalón G, Chiappe LM, Martinelli AG, Nava W, Field DJ. Fossil basicranium clarifies the origin of the avian central nervous system and inner ear. Proc Biol Sci 2022; 289:20221398. [PMID: 36168759 PMCID: PMC9515635 DOI: 10.1098/rspb.2022.1398] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Among terrestrial vertebrates, only crown birds (Neornithes) rival mammals in terms of relative brain size and behavioural complexity. Relatedly, the anatomy of the avian central nervous system and associated sensory structures, such as the vestibular system of the inner ear, are highly modified with respect to those of other extant reptile lineages. However, a dearth of three-dimensional Mesozoic fossils has limited our knowledge of the origins of the distinctive endocranial structures of crown birds. Traits such as an expanded, flexed brain, a ventral connection between the brain and spinal column, and a modified vestibular system have been regarded as exclusive to Neornithes. Here, we demonstrate all of these ‘advanced’ traits in an undistorted braincase from an Upper Cretaceous enantiornithine bonebed in southeastern Brazil. Our discovery suggests that these crown bird-like endocranial traits may have originated prior to the split between Enantiornithes and the more crownward portion of avian phylogeny over 140 Ma, while coexisting with a remarkably plesiomorphic cranial base and posterior palate region. Altogether, our results support the interpretation that the distinctive endocranial morphologies of crown birds and their Mesozoic relatives are affected by complex trade-offs between spatial constraints during development.
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Affiliation(s)
- Guillermo Navalón
- Unidad de Paleontología, Departamento de Biología, Universidad Autónoma de Madrid, Madrid, Spain.,Department of Earth Sciences, University of Cambridge, Cambridge, UK
| | - Luis M Chiappe
- Dinosaur Institute, Natural History Museum of Los Angeles, 900 Exposition Boulevard, Los Angeles, CA 90007, USA
| | - Agustín G Martinelli
- Sección Paleontología de Vertebrados, CONICET-Museo Argentino de Ciencias Naturales 'Bernardino Rivadavia', Buenos Aires, Argentina
| | - William Nava
- Museu de Paleontologia de Marília, Marília, São Paulo, Brazil
| | - Daniel J Field
- Department of Earth Sciences, University of Cambridge, Cambridge, UK.,Museum of Zoology, University of Cambridge, Cambridge, UK
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The impact of environmental factors on the evolution of brain size in carnivorans. Commun Biol 2022; 5:998. [PMID: 36130990 PMCID: PMC9492690 DOI: 10.1038/s42003-022-03748-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 07/20/2022] [Indexed: 11/28/2022] Open
Abstract
The reasons why some animals have developed larger brains has long been a subject of debate. Yet, it remains unclear which selective pressures may favour the encephalization and how it may act during evolution at different taxonomic scales. Here we studied the patterns and tempo of brain evolution within the order Carnivora and present large-scale comparative analysis of the effect of ecological, environmental, social, and physiological variables on relative brain size in a sample of 174 extant carnivoran species. We found a complex pattern of brain size change between carnivoran families with differences in both the rate and diversity of encephalization. Our findings suggest that during carnivorans’ evolution, a trade-off have occurred between the cognitive advantages of acquiring a relatively large brain allowing to adapt to specific environments, and the metabolic costs of the brain which may constitute a disadvantage when facing the need to colonize new environments. The brain size of carnivores has evolved to balance a trade-off between increased cognitive function and increased metabolic cost.
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48
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Abstract
The reasons why some animals have developed larger brains has long been a subject of debate. Yet, it remains unclear which selective pressures may favour the encephalization and how it may act during evolution at different taxonomic scales. Here we studied the patterns and tempo of brain evolution within the order Carnivora and present large-scale comparative analysis of the effect of ecological, environmental, social, and physiological variables on relative brain size in a sample of 174 extant carnivoran species. We found a complex pattern of brain size change between carnivoran families with differences in both the rate and diversity of encephalization. Our findings suggest that during carnivorans' evolution, a trade-off have occurred between the cognitive advantages of acquiring a relatively large brain allowing to adapt to specific environments, and the metabolic costs of the brain which may constitute a disadvantage when facing the need to colonize new environments.
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49
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Nakao T, Yamasaki T, Ogihara N, Shimada M. Relationship between flightlessness and brain morphology among Rallidae. J Anat 2022; 241:776-788. [PMID: 35608388 PMCID: PMC9358762 DOI: 10.1111/joa.13690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 05/02/2022] [Accepted: 05/03/2022] [Indexed: 11/30/2022] Open
Abstract
Studies have suggested that the brain morphology and flight ability of Aves are interrelated; however, such a relationship has not been thoroughly investigated. This study aimed to examine whether flight ability, volant or flightless, affects brain morphology (size and shape) in the Rallidae, which has independently evolved to adapt secondary flightlessness multiple times within a single taxonomic group. Brain endocasts were extracted from computed tomography images of the crania, measured by 3D geometric morphometrics, and were analyzed using principal component analysis. The results of phylogenetic ANCOVA showed that flightless rails have brain sizes and shapes that are significantly larger than and different from those of volant rails, even after considering the effects of body mass and brain size respectively. Flightless rails tended to have a wider telencephalon and more inferiorly positioned foramen magnum than volant rails. Although the brain is an organ that requires a large amount of metabolic energy, reduced selective pressure for a lower body weight may have allowed flightless rails to have larger brains. The evolution of flightlessness may have changed the position of the foramen magnum downward, which would have allowed the support of the heavier cranium. The larger brain may have facilitated the acquisition of cognitively advanced behavior, such as tool-using behavior, among rails.
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Affiliation(s)
- Tatsuro Nakao
- Graduate School of Science and EngineeringTeikyo University of ScienceUenoharaJapan
| | | | | | - Masaki Shimada
- Department of Animal SciencesTeikyo University of ScienceUenoharaJapan
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50
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Percival CJ, Devine J, Hassan CR, Vidal‐Garcia M, O'Connor‐Coates CJ, Zaffarini E, Roseman C, Katz D, Hallgrimsson B. The genetic basis of neurocranial size and shape across varied lab mouse populations. J Anat 2022; 241:211-229. [PMID: 35357006 PMCID: PMC9296060 DOI: 10.1111/joa.13657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 02/11/2022] [Accepted: 03/08/2022] [Indexed: 11/26/2022] Open
Abstract
Brain and skull tissues interact through molecular signalling and mechanical forces during head development, leading to a strong correlation between the neurocranium and the external brain surface. Therefore, when brain tissue is unavailable, neurocranial endocasts are often used to approximate brain size and shape. Evolutionary changes in brain morphology may have resulted in secondary changes to neurocranial morphology, but the developmental and genetic processes underlying this relationship are not well understood. Using automated phenotyping methods, we quantified the genetic basis of endocast variation across large genetically varied populations of laboratory mice in two ways: (1) to determine the contributions of various genetic factors to neurocranial form and (2) to help clarify whether a neurocranial variation is based on genetic variation that primarily impacts bone development or on genetic variation that primarily impacts brain development, leading to secondary changes in bone morphology. Our results indicate that endocast size is highly heritable and is primarily determined by additive genetic factors. In addition, a non-additive inbreeding effect led to founder strains with lower neurocranial size, but relatively large brains compared to skull size; suggesting stronger canalization of brain size and/or a general allometric effect. Within an outbred sample of mice, we identified a locus on mouse chromosome 1 that is significantly associated with variation in several positively correlated endocast size measures. Because the protein-coding genes at this locus have been previously associated with brain development and not with bone development, we propose that genetic variation at this locus leads primarily to variation in brain volume that secondarily leads to changes in neurocranial globularity. We identify a strain-specific missense mutation within Akt3 that is a strong causal candidate for this genetic effect. Whilst it is not appropriate to generalize our hypothesis for this single locus to all other loci that also contribute to the complex trait of neurocranial skull morphology, our results further reveal the genetic basis of neurocranial variation and highlight the importance of the mechanical influence of brain growth in determining skull morphology.
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Affiliation(s)
| | - Jay Devine
- Cell Biology and AnatomyUniversity of Calgary Cumming School of MedicineCalgaryCanada
| | | | - Marta Vidal‐Garcia
- Cell Biology and AnatomyUniversity of Calgary Cumming School of MedicineCalgaryCanada
| | | | - Eva Zaffarini
- Cell Biology and AnatomyUniversity of Calgary Cumming School of MedicineCalgaryCanada
| | - Charles Roseman
- Department of Evolution, Ecology, and BehaviorUniversity of IllinoisUrbanaIllinoisUSA
| | - David Katz
- Cell Biology and AnatomyUniversity of Calgary Cumming School of MedicineCalgaryCanada
| | - Benedikt Hallgrimsson
- Cell Biology and Anatomy, Alberta Children's Hospital Research Institute, Cumming School of MedicineUniversity of CalgaryCalgaryCanada
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