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For: Liu B, Ertesvåg H, Aasen IM, Vadstein O, Brautaset T, Heggeset TM. Draft genome sequence of the docosahexaenoic acid producing thraustochytrid Aurantiochytrium sp. T66. Genom Data 2016;8:115-6. [PMID: 27222814 DOI: 10.1016/j.gdata.2016.04.013] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 04/23/2016] [Indexed: 11/20/2022]
Number Cited by Other Article(s)
1
Contreras P, Fica-León V, Navarrete J, Oviedo C. De novo transcriptome assembly and functional annotation supports potential biotechnological applications for the non-model thraustochytrid Ulkenia visurgensis Lng2. Gene 2025;958:149492. [PMID: 40228758 DOI: 10.1016/j.gene.2025.149492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2025] [Revised: 03/19/2025] [Accepted: 04/10/2025] [Indexed: 04/16/2025]
2
Lee Chang KJ, Gorron Gomez E, Ebrahimie E, Dehcheshmeh MM, Frampton DMF, Zhou XR. Transcriptomic Signature of Lipid Production in Australian Aurantiochytrium sp. TC20. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2025;27:43. [PMID: 39912956 PMCID: PMC11802676 DOI: 10.1007/s10126-025-10415-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Accepted: 01/15/2025] [Indexed: 02/07/2025]
3
Suenaga T, Mitarai Y, Anh TN, Gotoh T, Nishijima W, Nakai S. Draft genome sequence of Aurantiochytrium spp. strains L3W, 9LR, 8W, 10W, and 10LW, a fatty acid-producing thraustochytrids from food wastes. Microbiol Resour Announc 2024;13:e0065324. [PMID: 39535196 PMCID: PMC11636214 DOI: 10.1128/mra.00653-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 10/15/2024] [Indexed: 11/16/2024]  Open
4
Menzorov AG, Iukhtanov DA, Naumenko LG, Bobrovskikh AV, Zubairova US, Morozova KN, Doroshkov AV. Thraustochytrids: Evolution, Ultrastructure, Biotechnology, and Modeling. Int J Mol Sci 2024;25:13172. [PMID: 39684882 DOI: 10.3390/ijms252313172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2024] [Revised: 12/04/2024] [Accepted: 12/05/2024] [Indexed: 12/18/2024]  Open
5
Song Y, Yang X, Li S, Luo Y, Chang JS, Hu Z. Thraustochytrids as a promising source of fatty acids, carotenoids, and sterols: bioactive compound biosynthesis, and modern biotechnology. Crit Rev Biotechnol 2024;44:618-640. [PMID: 37158096 DOI: 10.1080/07388551.2023.2196373] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 02/20/2023] [Indexed: 05/10/2023]
6
Prabhakaran P, Nazir MYM, Thananusak R, Hamid AA, Vongsangnak W, Song Y. Uncovering global lipid accumulation routes towards docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1 using integrative proteomic analysis. Biochim Biophys Acta Mol Cell Biol Lipids 2023;1868:159381. [PMID: 37625782 DOI: 10.1016/j.bbalip.2023.159381] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/15/2023] [Accepted: 08/22/2023] [Indexed: 08/27/2023]
7
Fracchia-Durán AG, Ramos-Zambrano E, Márquez-Rocha FJ, Martínez-Ayala AL. Bioprocess conditions and regulation factors to optimize squalene production in thraustochytrids. World J Microbiol Biotechnol 2023;39:251. [PMID: 37442840 DOI: 10.1007/s11274-023-03689-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2023] [Accepted: 06/26/2023] [Indexed: 07/15/2023]
8
Prabhakaran P, Raethong N, Thananusak R, Nazir MYM, Sapkaew C, Soommat P, Kingkaw A, Hamid AA, Vongsangnak W, Song Y. Revealing holistic metabolic responses associated with lipid and docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1. Biochim Biophys Acta Mol Cell Biol Lipids 2023;1868:159306. [PMID: 36907245 DOI: 10.1016/j.bbalip.2023.159306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 02/02/2023] [Accepted: 02/25/2023] [Indexed: 03/12/2023]
9
Liu X, Lyu L, Li J, Sen B, Bai M, Stajich JE, Collier JL, Wang G. Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. Microbiol Spectr 2023;11:e0424722. [PMID: 36744882 PMCID: PMC10101102 DOI: 10.1128/spectrum.04247-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 01/11/2023] [Indexed: 02/07/2023]  Open
10
Vincent F, Gralka M, Schleyer G, Schatz D, Cabrera-Brufau M, Kuhlisch C, Sichert A, Vidal-Melgosa S, Mayers K, Barak-Gavish N, Flores JM, Masdeu-Navarro M, Egge JK, Larsen A, Hehemann JH, Marrasé C, Simó R, Cordero OX, Vardi A. Viral infection switches the balance between bacterial and eukaryotic recyclers of organic matter during coccolithophore blooms. Nat Commun 2023;14:510. [PMID: 36720878 PMCID: PMC9889395 DOI: 10.1038/s41467-023-36049-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 01/13/2023] [Indexed: 02/01/2023]  Open
11
Prabhakaran P, Raethong N, Nazir Y, Halim H, Yang W, Vongsangnak W, Abdul Hamid A, Song Y. Whole Genome Analysis and Elucidation of Docosahexaenoic Acid (DHA) Biosynthetic Pathway in Aurantiochytrium sp. SW1. Gene 2022;846:146850. [PMID: 36044942 DOI: 10.1016/j.gene.2022.146850] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 08/17/2022] [Accepted: 08/25/2022] [Indexed: 11/15/2022]
12
Patel A, Bettiga M, Rova U, Christakopoulos P, Matsakas L. Microbial genetic engineering approach to replace shark livering for squalene. Trends Biotechnol 2022;40:1261-1273. [PMID: 35450778 DOI: 10.1016/j.tibtech.2022.03.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 03/08/2022] [Accepted: 03/18/2022] [Indexed: 12/23/2022]
13
Chi G, Xu Y, Cao X, Li Z, Cao M, Chisti Y, He N. Production of polyunsaturated fatty acids by Schizochytrium (Aurantiochytrium) spp. Biotechnol Adv 2021;55:107897. [PMID: 34974158 DOI: 10.1016/j.biotechadv.2021.107897] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 12/05/2021] [Accepted: 12/20/2021] [Indexed: 12/28/2022]
14
Rau EM, Aasen IM, Ertesvåg H. A non-canonical Δ9-desaturase synthesizing palmitoleic acid identified in the thraustochytrid Aurantiochytrium sp. T66. Appl Microbiol Biotechnol 2021;105:5931-5941. [PMID: 34292356 PMCID: PMC8390409 DOI: 10.1007/s00253-021-11425-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 06/14/2021] [Accepted: 06/22/2021] [Indexed: 11/28/2022]
15
Antarctic Thraustochytrids as Sources of Carotenoids and High-Value Fatty Acids. Mar Drugs 2021;19:md19070386. [PMID: 34356811 PMCID: PMC8303828 DOI: 10.3390/md19070386] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Revised: 06/17/2021] [Accepted: 06/29/2021] [Indexed: 01/20/2023]  Open
16
Simensen V, Voigt A, Almaas E. High-quality genome-scale metabolic model of Aurantiochytrium sp. T66. Biotechnol Bioeng 2021;118:2105-2117. [PMID: 33624839 DOI: 10.1002/bit.27726] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 01/21/2021] [Accepted: 02/14/2021] [Indexed: 01/17/2023]
17
Bartosova Z, Ertesvåg H, Nyfløt EL, Kämpe K, Aasen IM, Bruheim P. Combined Metabolome and Lipidome Analyses for In-Depth Characterization of Lipid Accumulation in the DHA Producing Aurantiochytrium sp. T66. Metabolites 2021;11:metabo11030135. [PMID: 33669117 PMCID: PMC7996494 DOI: 10.3390/metabo11030135] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 02/17/2021] [Accepted: 02/18/2021] [Indexed: 12/19/2022]  Open
18
Chen X, He Y, Ye H, Xie Y, Sen B, Jiao N, Wang G. Different carbon and nitrogen sources regulated docosahexaenoic acid (DHA) production of Thraustochytriidae sp. PKU#SW8 through a fully functional polyunsaturated fatty acid (PUFA) synthase gene (pfaB). BIORESOURCE TECHNOLOGY 2020;318:124273. [PMID: 33099103 DOI: 10.1016/j.biortech.2020.124273] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 10/10/2020] [Accepted: 10/13/2020] [Indexed: 06/11/2023]
19
Hu F, Clevenger AL, Zheng P, Huang Q, Wang Z. Low-temperature effects on docosahexaenoic acid biosynthesis in Schizochytrium sp. TIO01 and its proposed underlying mechanism. BIOTECHNOLOGY FOR BIOFUELS 2020;13:172. [PMID: 33088342 PMCID: PMC7565746 DOI: 10.1186/s13068-020-01811-y] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 10/06/2020] [Indexed: 05/25/2023]
20
Xu X, Huang C, Xu Z, Xu H, Wang Z, Yu X. The strategies to reduce cost and improve productivity in DHA production by Aurantiochytrium sp.: from biochemical to genetic respects. Appl Microbiol Biotechnol 2020;104:9433-9447. [PMID: 32978687 DOI: 10.1007/s00253-020-10927-y] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 09/14/2020] [Accepted: 09/21/2020] [Indexed: 12/14/2022]
21
Morabito C, Aiese Cigliano R, Maréchal E, Rébeillé F, Amato A. Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1. Data Brief 2020;31:105729. [PMID: 32490088 PMCID: PMC7262427 DOI: 10.1016/j.dib.2020.105729] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 05/07/2020] [Accepted: 05/13/2020] [Indexed: 11/25/2022]  Open
22
Reshma R, Kumari S, Arumugam M. Structural elucidation of selenocysteine insertion machinery of microalgal selenoprotein T and its transcriptional analysis. Biotechnol Appl Biochem 2020;68:636-647. [PMID: 32579774 DOI: 10.1002/bab.1974] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 06/21/2020] [Indexed: 11/06/2022]
23
Liang L, Zheng X, Fan W, Chen D, Huang Z, Peng J, Zhu J, Tang W, Chen Y, Xue T. Genome and Transcriptome Analyses Provide Insight Into the Omega-3 Long-Chain Polyunsaturated Fatty Acids Biosynthesis of Schizochytrium limacinum SR21. Front Microbiol 2020;11:687. [PMID: 32373097 PMCID: PMC7179369 DOI: 10.3389/fmicb.2020.00687] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Accepted: 03/25/2020] [Indexed: 11/13/2022]  Open
24
Dellero Y, Maës C, Morabito C, Schuler M, Bournaud C, Aiese Cigliano R, Maréchal E, Amato A, Rébeillé F. The zoospores of the thraustochytridAurantiochytrium limacinum: Transcriptional reprogramming and lipid metabolism associated to their specific functions. Environ Microbiol 2020;22:1901-1916. [DOI: 10.1111/1462-2920.14978] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 03/04/2020] [Accepted: 03/05/2020] [Indexed: 12/26/2022]
25
Yang X, Li S, Li S, Liu L, Hu Z. De Novo Transcriptome Analysis of Polyunsaturated Fatty Acid Metabolism in Marine Protist Thraustochytriidae sp. PKU#Mn16. J AM OIL CHEM SOC 2020. [DOI: 10.1002/aocs.12287] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
26
Han X, Zhao Z, Wen Y, Chen Z. Enhancement of docosahexaenoic acid production by overexpression of ATP-citrate lyase and acetyl-CoA carboxylase in Schizochytrium sp. BIOTECHNOLOGY FOR BIOFUELS 2020;13:131. [PMID: 32699554 PMCID: PMC7372839 DOI: 10.1186/s13068-020-01767-z] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Accepted: 07/11/2020] [Indexed: 05/18/2023]
27
Lipid and DHA-production in Aurantiochytrium sp. - Responses to nitrogen starvation and oxygen limitation revealed by analyses of production kinetics and global transcriptomes. Sci Rep 2019;9:19470. [PMID: 31857635 PMCID: PMC6923395 DOI: 10.1038/s41598-019-55902-4] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 12/04/2019] [Indexed: 01/30/2023]  Open
28
Patel A, Rova U, Christakopoulos P, Matsakas L. Simultaneous production of DHA and squalene from Aurantiochytrium sp. grown on forest biomass hydrolysates. BIOTECHNOLOGY FOR BIOFUELS 2019;12:255. [PMID: 31687043 PMCID: PMC6820942 DOI: 10.1186/s13068-019-1593-6] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 10/16/2019] [Indexed: 05/12/2023]
29
Production of α-linolenic Acid by an Oleaginous Green Algae Acutodesmus obliquus Isolated from Malaysia. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2019. [DOI: 10.22207/jpam.13.3.01] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
30
Song Z, Stajich JE, Xie Y, Liu X, He Y, Chen J, Hicks GR, Wang G. Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis. BMC Genomics 2018;19:541. [PMID: 30016947 PMCID: PMC6050695 DOI: 10.1186/s12864-018-4904-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 06/28/2018] [Indexed: 12/16/2022]  Open
31
A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105. Genes (Basel) 2018;9:genes9040200. [PMID: 29642531 PMCID: PMC5924542 DOI: 10.3390/genes9040200] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 03/27/2018] [Accepted: 03/27/2018] [Indexed: 01/19/2023]  Open
32
Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3. GENOME ANNOUNCEMENTS 2018;6:6/11/e01335-17. [PMID: 29545303 PMCID: PMC5854782 DOI: 10.1128/genomea.01335-17] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
33
Watanabe T, Sakiyama R, Iimi Y, Sekine S, Abe E, Nomura KH, Nomura K, Ishibashi Y, Okino N, Hayashi M, Ito M. Regulation of TG accumulation and lipid droplet morphology by the novel TLDP1 in Aurantiochytrium limacinum F26-b. J Lipid Res 2017;58:2334-2347. [PMID: 29025869 DOI: 10.1194/jlr.m079897] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Revised: 10/03/2017] [Indexed: 11/20/2022]  Open
34
Ren L, Hu X, Zhao X, Chen S, Wu Y, Li D, Yu Y, Geng L, Ji X, Huang H. Transcriptomic Analysis of the Regulation of Lipid Fraction Migration and Fatty Acid Biosynthesis in Schizochytrium sp. Sci Rep 2017;7:3562. [PMID: 28620184 PMCID: PMC5472558 DOI: 10.1038/s41598-017-03382-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Accepted: 04/27/2017] [Indexed: 11/26/2022]  Open
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