Overview of integrative tools and methods in assessing ecological integrity in estuarine and coastal systems worldwide

Analysis of four heavy metal concentrations in sediments fromthe Jiaozhou Bay, China by visible and near infrared spectroscopy (225-975 nm)

As an important component ofbiogeochemical cyclein coastal ecosystems, sediments are the sink of heavy metals. Therefore, distribution and dynamics of heavy metals in sediments could assess ecological quality and predict ecological risks. In the new era, rapid and green technology are highly needed, especially that could determine multi-parameters simultaneously. Here, we explored a new method to rapidly determine concentrations of heavy metals in sediments by visible and near infrared reflectance spectroscopy (VIRS).We sampled sediments in the Jiaozhou Bay, China, collected their reflectance spectra, and measured concentrations of four heavy metals (As, Cr, Cu, and Zn). Heavy metal models were established and evaluated using substances highly correlated with heavy metals. This study provides an effective reference for rapid analysis of As, Cr, Cu, and Zn simultaneously in sediments, at least in the Jiaozhou Bay, and for ecological environment protection and resource development of the Jiaozhou Bay.

Mixing apples and oranges: Assessing ecological status and its confidence from multiple and diverse indicators

Ecosystem responses to increasing human pressures are complex and diverse, affecting organisms across all trophic levels. This has prompted the development of methods that integrate information across many indicators for environmental management. Legislative frameworks such as the European Water Framework Directive (WFD), specifically prescribe that integrated assessme nt (IA) of ecological status must consider indicators representing various biological and supporting quality elements. We present a general approach for an IA system based on a piece-wise linear transformation of indicator distributions to a standardized scale, allowing for integrating information from multiple and diverse indicators through a policy-dependent aggregation scheme. Uncertainties associated with monitoring data used for calculating indicators and their propagation throughout the integration scheme allow for confidence assessment at all levels of the hierarchical integration. Specific pressures leading to ecological impact can be identified through the most impaired indicators in the hierarchical and transparent aggregation scheme. The IA and its confidence are facilitated though the development of an online tool that accesses information from monitoring databases and presents the outcome at all levels of the assessment, ensuring consistency and transparency in the calculations for all potential stakeholders. We demonstrate the versality and applicability of the approach using indicators and aggregation principles from the Swedish national guidelines for assessing ecological status of rivers, lakes and coastal waters according to the WFD. Although the approach and the tool were developed specifically for the WFD ecological status assessment in Sweden, the generality of the approach implies that it can easily be adapted to the WFD assessment methods of other countries as well as other policies, where an integrated assessment is required.

Integrated assessment of eutrophication in the southern Black Sea waters, using the Nested Environmental Status Assessment Tool

This research deals with the land-based pressures on the southern Black Sea coast (Turkey), with the objective of assessing their eutrophication impacts. In this context, reference values of some of the eutrophication indicators were calculated, and eutrophication assessment was carried out for this area using the holistic approach NEAT (Nested Environmental Status Assessment Tool). In addition, correlations between NEAT results of coastal regions and pressure-impact analysis methods were investigated. In the determined Spatial Assessment Unit (SAU) areas, 9 indicators were evaluated according to the SAU surface, both with and without weighting by their size the overall assessment of the Turkish Black Sea coast is good (0.70) and moderate (0.57) environmental status, for non-weighting and weighting by SAUs, respectively, with a high confidence level. With this study, we concluded that the sensitivity of the assessment tool needs to be increased. Despite these results, an appropriate number of indicators to represent the water column should be added. It is important to include the phytoplankton variable in the evaluation in future studies. In addition, this study, which uses NEAT allows identifying problematic environmental areas that require attention and action from managers and policymakers.

Pollution status determination using trace metals and organic contaminants of the water column in coastal areas of the Red Sea and the Gulf of Aqaba: A baseline assessment

Herein, we aim to provide a baseline assessment of the pollution status of the water column in coastal areas of Saudi Arabia (Red Sea and the Gulf of Aqaba), using trace metals (Cd, Co, Cr, Cu, Ni, Pb and Zn), total petroleum hydrocarbons (TPHs) and polycyclic aromatic hydrocarbons (PAHs), in seawater samples obtained from 71 sampling stations in June-July 2021. Concerning trace metals, the maximum concentrations for Co, Cu and Ni were detected in Al-Shuqaiq, whereas the highest Pb and Zn concentrations were found in the Jeddah lagoon waters. Elevated concentrations of TPHs and the highest sum of PAHs were recorded in surface waters of Al Lith, Jeddah lagoon and Jeddah Mena. Overall, the concentrations of all trace metals, TPHs and individual PAHs for which environmental standards have been stipulated for the Kingdom of Saudi Arabia fall well below the threshold values.

Submarine outfall effect on subtidal macrobenthic communities in a southwestern Atlantic coastal city

Submarine outfalls are an effective alternative for the final discharge of wastewater. The aim was to evaluate the subtidal macrobenthic community's responses and the changes in bottom sedimentary dynamics due to submarine outfall (SO) location. Sampling stages were: before SO (B_SO), after SO (A_SO) and after treatment plant (A_EDAR). Sampling sites were determined at different distances from the coastline (coastal, oceanic, and reference) on both sides of the pipe (North and South). Species shifts (from tolerant to sensitive) were observed along with a decrease in organic matter in the A_EDAR Stage. There were changes in the sedimentary dynamic with sediment accumulation on the South side of the SO (finest sediments) and erosion on the North side (coarsest sediments) in the A_SO and A_EDAR Stages. Species turnover was higher than nesting in all stages. Functional trait analysis allowed the identification of temporal variations in benthic communities. The body size, development mode, feeding mode, habit, adult mobility and tolerance to pollution were useful functional traits to detect changes through Stages (B_SO, A_SO, and A_EDAR). Biotic indices classified the sites as slightly disturbed, indicating a slight improvement in the A_EDAR Stage.

Responses of biological traits of macrobenthic fauna to a eutrophication gradient in a semi-enclosed bay, China

The impacts of eutrophication on benthic ecological functions are of increasing concern in recent years. In order to assess the response of macrobenthic fauna to increasing eutrophication, two field sampling surveys were conducted during the summer (July-August 2020) and autumn (October-November 2020) from offshore, nearshore to estuarine sediments in Bohai Bay, northern China. Biological trait analysis was employed for the assessment of macrofaunal samples. The results indicated that there was an increase in the proportion of benthic burrowering or tube-dwelling sediment feeders and taxa with higher larval dispersal ability, but a decrease in the proportion of taxa showing high motility in areas with higher nutrient levels. Seasonal differences were also noted in the shift in biological traits, with a significantly lower similarity among the sampling areas in summer and a higher proportion of carnivorous taxa in autumn. The findings suggested that long-term disturbance can lead to the dominance of smaller body-sized benthic species and reduced sediment quality, impeding ecological recovery of benthic organisms under such harsh environment.

Hydropower development in the Himalaya: identifying critical river stretches

Two hydroelectric projects are operational in the upper and lower stretches of the river Alaknanda near Lambagarh and Srinagar that are respectively ~ 140 km apart. The health of the river ecosystem in the flowing stretches between and below these projects was bio-assessed, based on widely used diatom indices and van Dam ecologic values computed by OMNIDIA software. Samples were collected from Birahi (S3), the semi-natural stretch ~ 53 km downstream of the powerhouse, Narkota (S5), the impacted stretch ~ 27 km upstream Srinagar dam and Bagwan (S8), the highly regulated stretch ~ 22 km downstream Srinagar. IPS and IBD revealed mild pollution in the upper and lower stretch compared to relatively elevated pollution at S5. However, TDI indicates moderate organic pollution at S3 and S5, whereas the IDS/E indicates low degradation at all stations. The prevalence of tolerant N-autotroph, β-mesosprobe, mesotrophic, and aquatic to aerophilic categories of van Dam environmental variables indicate that a certain level of impact already persists due to organic-cum-nutrient load and perturbed flow regime. The prevalence of eutrophic and moderate O₂ categories shows that the ecosystem is in a critical state at S5, as also observed for species diversity. Based on the dominant categories, the river stretch was classified as "polyoxybiontic-cum-mesotrophic" at S3 and S8 while "moderate O₂-cum-eutrophic" at S5, implying higher organic and nutrient load in the river section at S5.

Quantitative assessment of the response of seawater environmental quality to marine protection policies under regional economic development --A case study of Xiamen Bay, China

Xiamen is the epitome of having steady economic growth and non-negligible environmental stress over decades. Several restoration programs have been applied to address the conflicts between heavy environmental pressures and human activities, but the response of current coastal protection policies to the marine environment remains to be assessed. Therefore, to assess the effectiveness and efficiency of marine conservation policies under regional economic growth in Xiamen, quantitative techniques including elasticity analysis and dummy variable regression models were applied. Here we show the potential relationship between seawater quality (pH, COD, DIN and DRP) and economic growth including Gross Domestic Product (GDP) and Gross Ocean Product (GOP), to evaluate the ongoing related policies by using over 10 years of data (2007-2018). According to our estimates, a GDP growth rate of 8.5% represents a stable economic climate that is favorable for the overall rehabilitation of the local coastal environment. The results of the quantitative research indicate a strong relationship between economic development and seawater quality, with marine protection regulations serving as the direct cause. As GDP growth and pH are significantly positively correlated (coef. = 0.8139, p = 0.012), ocean acidification has decreased over the last decade. With an inversely proportional correlation with GDP (coef. = 0.8456, p = 0.002) and GOP (coef. = 0.8046, p = 0.005), the trend in COD concentrations effectively meets the targets of current pollution control legislation. By using a dummy variable regression model, we found that legislation is the most effective way in seawater recovery in the GOP section, and positive externalities of marine protection frameworks are also estimated. Meanwhile, it is predicted that the negative effects from the non-GOP section will gradually affect the coastal environmental quality gradually. An overall framework for controlling marine pollutant discharges, giving equal attention to maritime and non-maritime anthropogenic activities should be promoted and updated.

Long-term variation of dissolved metals and metalloid in the waters of an Atlantic mesotidal estuary (Sado Estuary, Portugal)

Estuaries have long been preferred sites of human settlement due to the benefits regarding proximity to fresh water and the ocean. As such, these environments have been subject to increasing anthropogenic pressures, resulting in issues of pollution and contamination. However, since the second half of the 20th century an environmental concern has reflected in the development of legislation, monitoring programmes and measures to diminish and control those impacts. The study presented herein integrates metals and metalloid concentrations from surface water samples obtained in a long-term monitoring programme (1986-2020) conducted in the Sado Estuary. The results obtained show a decrease and stabilisation of the concentrations of elements (between 81 % for Pb and 11 % for As in the average concentrations, between 83 % for Pb and 11 % for Cd in the median concentrations, and an increase of 1 % in the As median values). Nevertheless, high concentrations were still observed in the stations closest to the industrial area and the main freshwater to confluence with the estuary. Despite the efforts in improving the environmental quality of the Sado Estuary, possible effects in native species such as cuttlefishes and oysters are still a possibility, particularly in the stations where higher concentrations were registered, as well as close to nurseries as a result of trace metal transport through currents and tides.

Inferring the ecological quality status based on living benthic foraminiferal indices in transitional areas of the Guanabara bay (SE Brazil)

Using benthic foraminifera, we evaluate the ecological quality status (EcoQS) of transitional waters of the Guanabara Bay (SE Brazil) by applying the diversity-based index exp (H'_bc) and the sensitivity-based Foram-AMBI for the first time in South America. The Guanabara Bay was selected for this study as it is one of the largest transitional ecosystems in the State of Rio de Janeiro and has been severely impacted by anthropogenic activities. Concentrations of potentially toxic elements (PTEs) were assessed by sequential chemical extraction in three phases (i.e., dissolved in water, adsorbed on organic matter, and Mn oxy-hydroxides). Total organic carbon, total nitrogen, and stable isotope (δ¹³C and δ¹⁵N) signatures of organic matter were analyzed to trace environmental stress. The Ammonia/Elphidium ratio suggests hypoxic conditions at most of the sampled sites. Principal component analysis identifies the first component as environmental stress underlying organic matter and PTE enrichment (in all three phases), which is positively related to Foram-AMBI and negatively to exp (H'_bc). The exp (H'_bc) and Foram-AMBI indices reveal that stations near the Governador Island and Niterói margin have the worst EcoQS, showing medium to extreme pollution. Additionally, Foram-AMBI and exp (H'_bc) provide a congruent EcoQS classification for ∼64% of the sites. Although these results are promising, they suggest that a significant effort should be made to obtain better knowledge of foraminiferal ecological requirements to employ benthic foraminifera as a biomonitoring and management method.

A review and critical assessment of sedimentary metal indices used in determining the magnitude of anthropogenic change in coastal environments

The current critical review examines the application of 11 frequently used sedimentary metal indices in their ability to accurately assess the magnitude of human-induced change (enrichment) in the highly vulnerable and intensely developed coastal environment. The plethora and rapidly increasing number of sedimentary metal indices should, if not derived for special purposes, produce a consistent assessment on the basis that they use the same suite of metals and concentrations. Inconsistent numerical results produced by different index formulations should, when combined with their associated classification scheme, produce a common assessment of environmental condition. However, such a consistent outcome is seldom observed. Significant differences in assessment results are partly due to the historical evolution of indices and to the extraordinary diversity of background and reference values and materials being applied to account for pre-anthropogenic metal levels and confounding due to variable sediment characteristics. Size-normalised sample and background metal data used in the mCd and MEQ indices do not require reference values to account for textural variability and provide a quasi-direct measurement of enrichment with minimal computation (simple division). These priority indices should be combined into a single index (Enrichment Quotient, EQ). Results produced by the EF index were strongly correlated to mCd and MEQ and provide a similar classification and is recommended if normalised data are unavailable. Other indices assessed (MPI, PI, mPI, SEF, Igeo, PLI and Cf, original and current) provided a range of results, which either over- or under-estimated enrichment. The confusion concerning the choice and application of background and reference values in the assessment process is reviewed and their use in local and global assessment is clarified. Single- and combined-metal evaluations are recommended to provide detailed, local and more comprehensive assessments, respectively.

Comprehensive Assessment of Eutrophication in Xiamen Bay and Its Implications for Management Strategy in Southeast China

The eutrophication of coastal water has been a critical environmental problem in China's offshore areas. How to effectively assess the status of coastal waters is key for pollution treatment and environmental protection. In recent years, eutrophication-symptom-based and multi-indicator methods, termed "phase II" methods, have been gradually adopted to assess the eutrophication status in some coastal waters in China and have achieved success. The cumulative quantile is typically selected to determine the characteristic value of an indicator in "phase II" methods. The influence of small-scale damaged water bodies on eutrophication assessment may be exaggerated, which often leads to the overassessment of the eutrophication status. In this study, the area ratio method was integrated into the assessment of the estuarine trophic status (ASSETS) method in order to assess the eutrophication status of Xiamen Bay in 2016. The results indicated that, in 2016, the eutrophication status of Xiamen Bay coastal waters was moderate and exhibited spatiotemporal variation. The area ratio method can effectively reduce the effect of small-scale coastal waters with extremely high eutrophication on the overassessment of eutrophication at the broader scale, allowing the eutrophication status to be better reflected, even with limited observation data. The centralized distribution of pollution sources and poor hydrodynamic conditions are the main reasons for the aforementioned phenomenon. Controlling the pollution discharge from the Jiulong River in flood seasons is key to reducing eutrophication in Xiamen coastal waters.

Assessing ecological health in areas with limited data by using biological traits

A multitude of biotic indices that represent environmental status have been developed over the past decades making status comparisons difficult. However, transferring an existing index to a new region can be problematic due to differing stressors, ecosystem components and lack of knowledge on regional species sensitivities. Here we assess whether calculating species sensitivities to specific stressors based on biological traits offers a solution. We use biological traits of macrofaunal species to assess sensitivity to suspended sediment concentrations and calculated the Benthic Quality Index (BQI) at 47 sites across a suspended sediment gradient. This trait-based modification of the BQI was well correlated (0.82) to suspended sediment. Problems previously highlighted, relating to trait plasticity and differential weightings of indifferent and beneficial species, were investigated but did not strongly affect results. A trait-based approach has the additional benefit that the data could be easily converted to evaluate ecosystem function.

Picocyanobacterial Synechococcus in marine ecosystem: Insights from genetic diversity, global distribution, and potential function

Marine Synechococcus, a main group of picocyanobacteria, has been ubiquitously observed across the global oceans. Synechococcus exhibits high phylogenetical and phenotypical diversity, and horizontal gene transfer makes its genetic evolution much more intricate. With the development of measurement technologies and analysis methods, the genomic information and niche partition of each Synechococcus lineage tend to be precisely described, but the global analysis is still lacking. Therefore, it is necessary to summarize existing studies and integrate published data to gain a comprehensive understanding of Synechococcus on genetic variation, niche division, and potential functions. In this review, the maximum likelihood trees are constructed based on existing sequence data, including both phylogenetic and pigmentary gene markers. The global distribution characteristics of abundance, lineages, and pigment types are concluded through pooled analysis of more than 700 samples obtained from approximately 50 scientific research cruises. The potential functions of Synechococcus are explored in element cycles and biological interactions. Future work on Synechococcus is suggested to focus on not only elucidating the nature of Synechococcus biodiversity but also demonstrating its interactions with the ecosystem by combining bioinformatics and macroscopic isotope-labeled environmental parameters.

Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for identification of whole communities within a targeted group) is revolutionizing the field of aquatic biomonitoring. To date, most metabarcoding studies aiming to assess the ecological status of aquatic ecosystems have focused on water eDNA and macroinvertebrate bulk samples. However, the eDNA metabarcoding has also been applied to soft sediment samples, mainly for assessing microbial or meiofaunal biota. Compared to classical methodologies based on manual sorting and morphological identification of benthic taxa, eDNA metabarcoding offers potentially important advantages for assessing the environmental quality of sediments. The methods and protocols utilized for sediment eDNA metabarcoding can vary considerably among studies, and standardization efforts are needed to improve their robustness, comparability and use within regulatory frameworks. Here, we review the available information on eDNA metabarcoding applied to sediment samples, with a focus on sampling, preservation, and DNA extraction steps. We discuss challenges specific to sediment eDNA analysis, including the variety of different sources and states of eDNA and its persistence in the sediment. This paper aims to identify good-practice strategies and facilitate method harmonization for routine use of sediment eDNA in future benthic monitoring.

Small- and large-scale processes including anthropogenic pressures as drivers of gastropod communities in the NE Atlantic coast: A citizen science based approach

Rocky-shores are among the most threatened coastal habitats, particularly under human pressures. While rocky-shore communities have been increasingly used to evaluate local anthropogenic perturbations such as water eutrophication for instance, large-scale variability in relation to both natural and anthropogenic pressures is still overlooked. Here, using citizen science-based data, we applied a Random Forest modelling approach to assess the relative impact of both small-and large-scale processes (including natural and some anthropogenic pressures) on intertidal gastropod communities as well as taxa-specific gastropod abundances over more than 1000 km of the North-East Atlantic coast. Our model results demonstrate that small-scale conditions (i.e. within shore) are determinant in shaping gastropod communities. However, community responses are mainly driven by taxon-specific effects. Among large-scale predictors, high concentrations of inorganic nutrients and total suspended matter, as found in large river plumes, are the main drivers impacting the gastropod communities by depleting both taxon abundances and richness. According to models, the decline in abundance of the yet most prevalent taxa (Steromphala umbilicalis, Patella spp., S. pennanti and Phorcus lineatus) is expected to be between 65% and 85%, while Littorina littorea was the only taxon which may be favoured by high concentrations of inorganic nutrients and total suspended matter. Such results provide relevant insights in the context of ever-increasing needs for bioindicators of coastal ecosystems. Finally, this work sheds light on the value of a citizen science program resulting from a consultation between professional and citizen volunteers as a useful and efficient tool to investigate large-scale processes.

A study on the marine ecological security assessment of Guangdong-Hong Kong-Macao Great Bay Area

The construction of world-class Bay makes the marine ecology in Guangdong-Hong Kong-Macao Great Bay Area in risk. Based on the DPSIR index framework, Lotka-Volterra symbiosis model is applied to calculate symbiosis degree between coastal socio-economic system and marine ecosystem in 9 coastal cities. It is found that the marine ecological pressure in this area have not been reversed in recent 20 years. Most cities are in the stage that socio-economic development and marine ecological damage coexist. In Shenzhen, Guangzhou, Dongguan and Zhongshan, the damaged marine ecology has begun to restrain the further expansion of economy and society. The massive population agglomeration in Hong Kong, Macao and other places has caused serious marine ecological stress. It is urgent to improve the marine ecological security by cultivating ecological industrial system and industrial clusters, establishing a land-sea ecological restoration, promoting joint-protection and co-governance across different administrative regions.

Effect of multiple stressors on the functional traits of sub-tidal macrobenthic fauna: A case study of the southeast coast of India

The use of functional information of taxa is a promising approach to uncover the underlying mechanism of ecosystem functioning. We used biological trait analysis (BTA) to assess the functional response of subtidal macrobenthos with multiple stressors. Seventeen environmental variables from 42 stations of five coastal districts were assessed along the southeast coast of India. Dominant fauna was assigned into 20 categories belonging to six functional traits. Additionally, we used five ecological groups (EG) of AMBI as a covariable trait to validate functional traits and EG relationship. The trait composition in the communities showed significant variation between undisturbed and disturbed areas. RLQ/Fourth corner combined approach illustrated the effects of stressors and isolated the corresponding species associated with different stressors. Smaller, short-lived, deposit-feeding, and discretely motile fauna occurred at the disturbed areas, whereas, larger, long-lived, and highly motile at the undisturbed area. Dissolved oxygen, organic enrichment, and metals concentration were the main environmental descriptors influencing the trait composition. The results highlight the importance of the BTA approach to uncover the response of the macrobenthic community to anthropogenic disturbances-driven impacts in multi-stressed near-shore coastal ecosystems.

Assessment of Aquatic Ecosystem Health with Indices of Biotic Integrity (IBIs) in the Ganjiang River System, China

Indices of biotic integrity (IBIs) are widely used to assess aquatic ecosystem health. However, there are few studies on their relationships. Based on fish, macroinvertebrate and plankton survey data collected in the Ganjiang River system from 2016 to 2017, redundancy analysis (RDA) and canonical correspondence analysis (CCA) were used to analyze how the community structures of these organisms respond to environmental variables. The fish IBI (F-IBI), benthic macroinvertebrate IBI (B-IBI), and phytoplankton IBI (P-IBI) were applied to evaluate the health status of the aquatic ecosystem. A Kruskal–Wallis test (p < 0.05) and Spearman’s correlation coefficient analysis were performed to evaluate the spatiotemporal heterogeneity of the results. Our results suggested that the F-IBI-, B-IBI-, and P-IBI-based assessments indicated good, fair, and healthy Ganjiang River system ecosystem health statuses, respectively, and significant differences existed among these indices (p < 0.05). The main environmental factors affecting F-IBI, B-IBI, and P-IBI were different. At the temporal scale, the F-IBI and B-IBI were stable, while the P-IBI fluctuated obviously. The consistency between the F-IBI and B-IBI results was better than that between each of these indices and the P-IBI results, and the consistency was better on a larger scale. These research results show that comprehensive assessments based on multiple groups rather than a single group can better characterize the impacts of environmental pressures on water ecosystems.

Revisited a sediment quality triad approach in the Korean coastal waters: Past research, current status, and future directions

We present a comprehensive review of the sediment quality triad (SQT) assessment studies in Korea. The bibliographic analysis was applied to evaluate how approaches in sediment assessment have evolved. A meta-analysis was performed, to evaluate potential risks of sedimentary persistent toxic substances (PTSs) reported in Korean coastal waters. Within the framework, we identified and discussed current status and spatiotemporal trends in contamination of both classic and emerging PTSs over the recent decadal period. Out of 26 target regions in Korea, five hotspots (Sihwa, Masan, Ulsan, Taean, and Gwangyang) of concern could be identified. Four of those regions have been designated as Specially-Managed Sea Area under the implementation of Total Pollution Load Management System in Korea, except for Taean coast (oil spill site). Meantime, we could identify three stepwise research phases based on a bibliographic analysis; Phase 1 (1995-2008), Phase 2 (2009-2015), and Phase 3 (2016-2020). It is noteworthy that a technical evolution of the SQT assessment by the phase was featured. It was also evidenced that in-depth studies adopting multiple lines of evidence (LOEs) became prevailed upon approaching Phase 3. In a quantitative manner, the toxicity explanatory power of target PTSs increased by about 10% in Phase 3 compared to the earlier phases. The meta-analysis using ratio-to-mean value method applied for the data set having all three LOEs indicated general improvement of sediment qualities in the hotspots. However, their associations quite varied across regions and years, reflecting a dynamicity in oceanographic settings and/or heterogeneity in toxicological effect or benthic community response. At present, SQT assessment adopting the increased LOEs generally supports better assessment. In conclusion, we suggest that future SQT studies globally should reaffirm the utility of the "multiple LOEs approach", focusing on the identification and management of causative toxicants that driving negative ecological impacts on marine ecosystems.

From an economic crisis to a pandemic crisis: The need for accurate marine monitoring data to take informed management decisions

It is axomatic that a system cannot be managed unless it is measured and that the measurements occur in a rigorous, defendable manner covering relevant spatial and temporal scales. Furthermore, it is not possible to predict the future direction of a system unless any predictive approach or model is supported by empirical evidence from monitoring. The marine system is no different from any other system in these regards. This review indicates the nature and topics of marine monitoring, its constraints in times of economic austerity, the sequence of topics subject to monitoring and the amount of monitoring of various topics carried out as indicated by the number of publications and researchers. We discuss the way in which the nature of monitoring is decided and we use examples to comment on the way monitoring leads to and responds to marine management and governance.

M-Triad: An improvement of the sediment quality triad

The traditional sediment quality triad generally uses three lines of evidence (LOE) in the assessment, integrating environmental chemistry, ecology and ecotoxicology. However the assessment is performed without considering the multivariate structure within LOE. In order to improve the sediment quality assessment, the M-Triad is proposed. Instead of averaging the values within a LOE, the new approach is based on the Euclidean distance between each sampling station and the reference station (s) for each LOE. These distances are then plotted in a radar-chart to obtain the area of the triangle and the quality assessment is subsequently obtained from the difference between the triangle areas of the impacted and the reference station. Three studies were selected to test the applicability of the M-Triad. In two cases, the M-Triad returned a more realistic ranking of the stations as observed in the principal component analysis (PCA) from each LOE By including the Euclidean distance, the use of M-Triad is advantageous when multiple variables with negative or uncorrelated patterns within a LOE are analyzed simultaneously. The combination of the M-Triad and the results of the PCA allows one to identify multiple contamination gradients and how biota and bioassays respond to each of these gradients. In comparison to the traditional method, the M-Triad reduces the uncertainty of the final analysis, permitting a more comprehensive ecological assessment.

A Framework for Developing Green Building Rating Tools Based on Pakistan’s Local Context

Most countries have developed green building rating tools that are based on social, environmental, and economic dimensions. Pakistan followed a similar approach and has developed a rating tool known as Sustainability in Energy and Environmental Development (SEED). However, SEED is built on developed western countries’ rating tool standards which do not address Pakistan’s unique local context, especially from the cultural and governmental perspectives. This research aims to fill this research gap by developing a holistic framework of building rating tools that incorporates cultural and governmental dimensions. Based on an extensive literature review, a hypothetical framework, incorporating Pakistan’s unique local contexts and adding cultural and governmental dimensions to the widely adopted social, environmental, and economic dimensions of sustainability, was proposed in this paper. This framework was further validated by in-depth interviews with multiple stakeholders in Pakistan. A qualitative analysis of the interview results was carried out, and the final framework was proposed with key indicators, reflecting all five dimensions of sustainability. The verified sustainability framework can be used to improve or develop green building rating tools for Pakistan, and it can also inform other developing countries’ rating tool development.

Evaluation of Multivariate Biomarker Indexes Application in Ecotoxicity Tests with Marine Diatoms Exposed to Emerging Contaminants

Worldwide anthropogenic activities result in the production and release of potentially damaging toxic pollutants into ecosystems, thereby jeopardizing their health and continuity. Research studies and biomonitoring programs attend to this emerging problematic by applying and developing statistically relevant indexes that integrate complex biomarker response data to provide a holistic approach, reflecting toxically induced alterations at the organism or population level. Ultimately, indexes allow simple result communications, enhancing policy makers understanding, and contributing to better resource and environmental managing policies. In this study three indexes, the integrated biomarker response index (IBR), the bioeffects assessment index (BAI) and principal components analysis (PCA), were evaluated for their sensitivity in revealing toxically induced stress patterns in cells of the diatom Phaeodactylum tricornutum under contaminant exposure. The set of biomarkers selected for index construction comprised the anti-oxidant enzymes APX, CAT and SOD, and the lipid peroxidation marker TBARS. Several significant correlations with the applied concentration gradients were noticed for all indexes, although IBR excelled for its reliability in delivering statistically significant dose-response patterns for four out of the five tested compounds.

Principles to develop a simplified multimetric index for the assessment of the ecological status of Armenian rivers on example of the Arpa River system

The Government of the Republic of Armenia (RA) strives to ensure the measures to achieve good ecological status for Armenian surface water bodies. However, the main goal remains unaccomplished, as the hydro-biological monitoring tools are not properly developed. Thus, the current work aims at contributing to the establishment of principles and a relevant and cost-effective biological monitoring tool for the RA aquatic ecosystems, through the development of a simplified multimetric index (MMI). Since the adoption of the decree N° 927-N from 11 Jun 2011, the baseline studies have been initiated in the six river basin management areas established in the RA. The current work is summing up the results for the Arpa River system in order to test the methodology. In particular, it is testing the possibility to develop MMI based on the use of Rapid Biological Assessment protocol accepted in our monitoring system. Also, the work represents the approach of bottom-up biotic validation of reference sites established in the recent hydro-biologic monitoring system. Due to the proposed validation procedure, further use of one of the established reference sites in the case study object has been rejected. Considering well-established approaches for MMI development in EU member states, four variations of MMI were developed for a particular river system, and the combination of N_taxa-%EPT-Abundance(ind/m²)-BMWP-ASPT-FBI-N_family metrics has been proposed as the main one. However, further development of a river typology and the establishment of joint reference conditions in the Caucasus region have concluded as a priority.

Cohabiting with litter: Fish and benthic assemblages in coastal habitats of a heavily urbanized area

Anthropogenic litter negatively impacts the marine environment and threatens biodiversity. At the same time, it represents a suitable substrate for the settlement of sessile species, thus potentially altering composition and structure of soft bottom benthic assemblages. By using a Remotely Operated Vehicle (ROV), we hereby investigated patterns of abundance, distribution, and origin of benthic litter in three subtidal habitats of a heavily urbanized area and tested whether litter distribution related to patterns of fish and mega- and macro-benthic diversity. Litter accumulation mostly occurred on soft bottoms, while rocky substrata were the least affected, albeit being particularly threatened by sea-based pollution. As expected, the highest biodiversity was observed on rocky bottoms, hosting notable biogenic formations (Cladocora caespitosa, Leptogorgia sarmentosa) despite the area is historically affected by anthropogenic activities. No correlation was found between biota and marine litter, suggesting that litter does not apparently influence biodiversity and distribution of the investigated assemblages.

Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life

DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, it is important to develop and follow best practices to ensure optimal quality and traceability of the metadata associated with the reference barcodes used for identification. Sufficient metadata, as well as vouchers, corresponding to each reference barcode must be available to ensure reliable barcode library curation and, thereby, provide trustworthy baselines for downstream molecular species identification. This document (1) specifies the data and metadata required to ensure the relevance, the accessibility and traceability of DNA barcodes and (2) specifies the recommendations for DNA harvesting and for the storage of both voucher specimens/samples and barcode data.

Climate Change Impacts on Salt Marsh Blue Carbon, Nitrogen and Phosphorous Stocks and Ecosystem Services

Salt marshes are valuable ecosystems, as they provide food, shelter, and important nursery areas for fish and macroinvertebrates, and a wide variety of ecosystem services for human populations. These ecosystem services heavily rely on the floristic composition of the salt marshes with different species conferring different service values and different adaptation and resilience capacities towards ecosystem stressors. Blue carbon, nitrogen, and phosphorous stocks are no exception to this, and rely on the interspecific differences in the primary production metabolism and physiological traits. Furthermore, these intrinsic physiological characteristics also modulate the species response to any environmental stressor, such as the ones derived from ongoing global changes. This will heavily shape transitional ecosystem services, with significant changes of the ecosystem value of the salt marshes in terms of cultural, provisioning, regulating, and supporting ecosystem services, with a special emphasis on the possible alterations of the blue carbon, nitrogen, and phosphorous stocks retained in these key environments. Thus, the need to integrate plant physiological characteristics and feedbacks towards the expected climate change-driven stressors becomes evident to accurately estimate the ecosystem services of the salt marsh community, and transfer these fundamental services into economic assets, for a fluid communication of the ecosystems value to stakeholders, decision and policy makers, and environmental management entities.

Adding DNA barcoding to stream monitoring protocols - What's the additional value and congruence between morphological and molecular identification approaches?

Although aquatic macroinvertebrates and freshwater fishes are important indicators for freshwater quality assessments, the morphological identification to species-level is often impossible and thus especially in many invertebrate taxa not mandatory during Water Framework Directive monitoring, a pragmatism that potentially leads to information loss. Here, we focus on the freshwater fauna of the River Sieg (Germany) to test congruence and additional value in taxa detection and taxonomic resolution of DNA barcoding vs. morphology-based identification in monitoring routines. Prior generated morphological identifications of juvenile fishes and aquatic macroinvertebrates were directly compared to species assignments using the identification engine of the Barcode of Life Data System. In 18% of the invertebrates morphology allowed only assignments to higher systematic entities, but DNA barcoding lead to species-level assignment. Dissimilarities between the two approaches occurred in 7% of the invertebrates and in 1% of the fishes. The 18 fish species were assigned to 20 molecular barcode index numbers, the 104 aquatic invertebrate taxa to 113 molecular entities. Although the cost-benefit analysis of both methods showed that DNA barcoding is still more expensive (5.30–8.60€ per sample) and time consuming (12.5h), the results emphasize the potential to increase taxonomic resolution and gain a more complete profile of biodiversity, especially in invertebrates. The provided reference DNA barcodes help building the foundation for metabarcoding approaches, which provide faster sample processing and more cost-efficient ecological status determination.

A novel systematic, risk based approach to support the designation of aquatic disposal sites

Humans rely fundamentally on the marine environment, which is at the same time subject to an increasingly broad range of anthropogenic pressures, leading to growing concerns and the need for effective management for marine protection. One activity is the dredging of ports and harbours which is necessary to maintain safe channels for commercial and recreational navigation. Regulatory authorities in developing countries have few resources to conduct full EIAs for determining dredged material disposal sites but are required to do so under international obligations. The Tool in this paper provides an effective, pragmatic, transparent, consistent, and robust approach to protect the environment whilst using limited technical and scientific resources through a risk based approach to defining need, characterising and designating disposal sites at sea for dredged material. Whilst this approach for dredged material disposal sites was developed for use in UK, this process is equally applicable to other waste types, worldwide.

A webGIS Application to Assess Seawater Quality: A Case Study in a Coastal Area in the Northern Aegean Sea

The assessment of seawater quality in coastal areas is an important issue as it is related to the welfare of coastal ecosystems, a prerequisite for the provision of the related ecosystem services. During the last decades, marine eutrophication has become an important problem in coastal waters as a result of nutrient inputs increase. Consequently, there is need for appropriate methods and tools to assess the eutrophication status of seawater which should be user-friendly to coastal managers and support the adoption of effective plans for the protection and sustainable development of the coastal environment. In this framework, a user-friendly webGIS application has been developed and the Strait of Mytilene at the southeastern part of the Island of Lesvos in the NE Aegean Sea, Greece, was used as a case study. The methodology includes, as a first step, the evaluation of the accuracy of spatial interpolators widely applied in oceanographic studies for assessing the spatial distribution of relevant variables. The most appropriate interpolator revealed for each variable is subsequently applied for the production of the representative thematic layer. The second step involves the integration of the information from the optimal thematic layers representing the spatial distributions of the variables under study; as a result, a new thematic layer illustrating the eutrophication status of the study area is produced. The webGIS application is fully available via a web browser and provides a number of geoprocessing modules developed in Python which implement the user interface, the application of the interpolation analytical tasks, the statistical evaluation toolset and the integration of the optimal interpolated layers. Suggestions for further improvement of the proposed webGIS application are discussed.

Environmental DNA metabarcoding reveals estuarine benthic community response to nutrient enrichment - Evidence from an in-situ experiment

Nutrient loading is a major threat to estuaries and coastal environments worldwide, therefore, it is critical that we have good monitoring tools to detect early signs of degradation in these ecologically important and vulnerable ecosystems. Traditionally, bottom-dwelling macroinvertebrates have been used for ecological health assessment but recent advances in environmental genomics mean we can now characterize less visible forms of biodiversity, offering a more holistic view of the ecosystem and potentially providing early warning signals of disturbance. We carried out a manipulative nutrient enrichment experiment (0, 150 and 600 g N fertilizer m^-2) in two estuaries in New Zealand to assess the effects of nutrient loading on benthic communities. After seven months of enrichment, environmental DNA (eDNA) metabarcoding was used to examine the response of eukaryotic (18S rRNA), diatom only (rbcL) and bacterial (16S rRNA) communities. Multivariate analyses demonstrated changes in eukaryotic, diatom and bacterial communities in response to nutrient enrichment at both sites, despite differing environmental conditions. These patterns aligned with changes in macrofaunal communities identified using traditional morphological techniques, confirming concordance between disturbance indicators detected by eDNA and current monitoring approaches. Clear shifts in eukaryotic and bacterial indicator taxa were seen in response to nutrient loading while changes in diatom only communities were more subtle. Community changes were discernible between 0 and 150 g N m^-2 treatments, suggesting that estuary health assessment tools could be developed to detect early signs of degradation. Increasing variation in community structure associated with nutrient loading could also be used as an indicator of stress or approaching tipping points. This work represents a first step towards the development of molecular-based estuary monitoring tools, which could provide a more holistic and standardized approach to ecosystem health assessment with faster turn-around times and lower costs.

European aquatic ecological assessment methods: A critical review of their sensitivity to key pressures

The European Union has embarked on a policy which aims to achieve good ecological status in all surface waters (i.e. rivers, lakes, transitional and coastal waters). In theory, ecological status assessment methods should address the effects of all relevant human pressures. In this study, we analyze the degree to which methods European countries use to assess ecological status tackle various pressures affecting European waters. Nutrient pollution is by far the best-covered pressure for all four water categories. Out of total of 423 assessment methods, 370 assess eutrophication and pressure-specific relationships have been demonstrated for 212 of these. "General degradation" is addressed by 238 methods, mostly validated by relationships to combined pressure indices. Other major pressures have received significantly less effort: hydromorphological degradation is assessed by 160 methods and pressure-specific relationships have been demonstrated for just 40 of these. Hydromorphological pressures are addressed (at least by one BQE) only by 25% countries for coastal waters and 70-80% for lakes and transitional waters. Specific diagnostic tools (i.e. single-pressure relationships) for hydromorphology have only been developed by a few countries: only 20% countries have such methods for lakes, coastal and transitional waters and less than half for rivers. Toxic contamination is addressed by 90 methods; however, pressure-specific relationships have been demonstrated for just eight of these. Only two countries have demonstrated pressure-specific acidification methods for rivers, and three for lakes. In summary, methods currently in use mostly address eutrophication and/or general degradation, but there is not much evidence that they reliably pick up the effects of other significant pressures such as hydromorphology or toxic contamination. Therefore, we recommend that countries re-examine: (1) those pressures which affect different water categories in the country; (2) relevant assessment methods to tackle those pressures; (3) whether pressure-response relationships have been developed for each of these.

Integration of ecosystem science into radioecology: A consensus perspective

In the Fall of 2016 a workshop was held which brought together over 50 scientists from the ecological and radiological fields to discuss feasibility and challenges of reintegrating ecosystem science into radioecology. There is a growing desire to incorporate attributes of ecosystem science into radiological risk assessment and radioecological research more generally, fueled by recent advances in quantification of emergent ecosystem attributes and the desire to accurately reflect impacts of radiological stressors upon ecosystem function. This paper is a synthesis of the discussions and consensus of the workshop participant's responses to three primary questions, which were: 1) How can ecosystem science support radiological risk assessment? 2) What ecosystem level endpoints potentially could be used for radiological risk assessment? and 3) What inference strategies and associated methods would be most appropriate to assess the effects of radionuclides on ecosystem structure and function? The consensus of the participants was that ecosystem science can and should support radiological risk assessment through the incorporation of quantitative metrics that reflect ecosystem functions which are sensitive to radiological contaminants. The participants also agreed that many such endpoints exit or are thought to exit and while many are used in ecological risk assessment currently, additional data need to be collected that link the causal mechanisms of radiological exposure to these endpoints. Finally, the participants agreed that radiological risk assessments must be designed and informed by rigorous statistical frameworks capable of revealing the causal inference tying radiological exposure to the endpoints selected for measurement.

Comparative analysis of trace metal levels in the crab Dotilla fenestrata, sediments and water in Durban Bay harbour, Richards Bay harbour and Mlalazi estuary, Kwazulu-Natal, South Africa

Durban Bay and Richards Bay Harbours are the largest and most economically active shipping harbours in South Africa supporting a diversity of ecosystems and biota of ecological importance. This study assessed and compared levels of metals in selected tissues of the sand bubbler crab (Dotilla fenestrata), water and sediments from anthropogenically impacted Durban and Richards Bay Harbours with those of Mlalazi estuary, a considered pristine site due to its sheltered catchments. Metal concentrations (Cd, Cu, Pb and Zn) were investigated using Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES). Metals concentrations in crab tissues were as follows; exoskeleton > gill > digestive gland, metal concentrations in tissues followed the order Cu > Zn > Pb > Cd. Metal levels in crabs from Durban Harbour (Cd 0.42, Cu 83.8, Pb 2.43and Zn 6.4 μg/g) were significantly higher than Richards Bay (Cd 0.22, Cu 27.7, Pb 1.23 and Zn 9.54 μg/g) and Mlalazi estuary (Cd 0.17, Cu 18.7, Pb 3.53 and Zn 6.91 μg/g). Metal levels in sediments followed the order Zn > Cu > Pb > Cd. Mlalazi had significantly elevated metal levels in sediment (Cd 6.83, Cu 35.63, Pb 33.43 and Zn 56.27 μg/g) compared to Durban Harbour (Cd 2.73, Cu 16.07, Pb 12.20 and Zn 38.70 μg/g) and Richards Bay (Cd 3.10, Cu 16.00, Pb 11.43 and Zn 26.07 μg/g). Metal concentrations in water were Cu > Zn > Pb > Cd save Mlalazi estuary with significantly higher Zn levels. Mlalazi estuary, the considered pristine site had significantly elevated metal levels in the sediments and water compared with the impacted sites; however, had significantly lower metal levels in the crabs’ tissues due to lower metal bioavailability. Factors such as high natural metal concentrations, metal speciation, sediment grain and organic matter content could possibly account for high metal concentrations without corresponding bioaccumulation and magnification in crabs from Mlalazi estuary.

Mazor R, Theroux S, J. Gillett D, Lane B, Gearheart G. The importance of open science for biological assessment of aquatic environments

Open science principles that seek to improve science can effectively bridge the gap between researchers and environmental managers. However, widespread adoption has yet to gain traction for the development and application of bioassessment products. At the core of this philosophy is the concept that research should be reproducible and transparent, in addition to having long-term value through effective data preservation and sharing. In this article, we review core open science concepts that have recently been adopted in the ecological sciences and emphasize how adoption can benefit the field of bioassessment for both prescriptive condition assessments and proactive applications that inform environmental management. An example from the state of California demonstrates effective adoption of open science principles through data stewardship, reproducible research, and engagement of stakeholders with multimedia applications. We also discuss technical, sociocultural, and institutional challenges for adopting open science, including practical approaches for overcoming these hurdles in bioassessment applications.

Geomorphological control of habitat distribution in an intermittent shallow saline lake, Gallocanta Lake, NE Spain

The aim of the present study consists on the establishment of any relationship or interaction between geomorphological processes and vegetation/habitat distribution in an area with strong environmental gradients: an active saline lake in NE Spain. The resulting maps of the major geoforms and CORINE habitats within the lacustrine area were overlain to determine any significant relationships, taking into account the elevation derived from Lidar data. Whereas the geoforms resulted to have a roughly concentric distribution, the habitats appeared to be spread across different areas, and flooding frequency seemed not to be a determining factor in their altitudinal distribution. The correspondence matrix for geoforms and habitats underlined the coincidence between presently active morphodynamic units, flooding/salinity, and habitats typical of saline environments. Geomorphological units associated with the presently active shoreline dynamics host the habitats more typically related to frequent flooding and high salinity levels. The delay between geomorphological dynamics and vegetation changes, together with the opportunistic character of vegetation, promote the coexistence of different geomorphological processes and a great variety of plant communities and habitats. As a major conclusion, the present study provides a method through which a standard procedure may be set up to further determine the interaction between geomorphological processes and vegetation distribution, very useful for understanding vegetation patterns and conservation biodiversity, and the planning and managing of Natura 2000 sites.

Ten Principles to Determine Environmental Flow Requirements for Temporarily Closed Estuaries

Temporarily closed estuaries require seasonal opening to tidal flows to maintain normalecological processes. Each estuary has specific environmental flow (EFlow) requirements basedon the relationship between freshwater inflow, coastal dynamics, rate of sandbar formation,and the open/closed state of the mouth. Key abiotic processes and ecosystem services linkedto mouth state were highlighted. We reviewed completed EFlow requirement studies for temporarilyclosed estuaries in South Africa and found that the formulation of these requirements shouldconsider the timing and magnitude of flows in relation to the morphology of an estuary, its mouthstructure, catchment size, and climate. We identified ten key principles that could be adapted tosimilar systems in equivalent climatic settings. Principle 1 recognizes that each estuary is unique interms of its EFlow requirements because size, scale, and sensitivity of core elements to freshwaterinflow are specific for each system; EFlows cannot be extrapolated from one estuary to another.Principle 2 highlights the importance of baseflows in keeping an estuary mouth open because a smallreduction in flow can cause the mouth to close and alter essential ecological processes. Principle 3outlines the role of floods in resetting natural processes by flushing out large volumes of sedimentand establishing the equilibrium between erosion and sedimentation. Principle 4 emphasizes the needfor open mouth conditions to allow regular tidal flushing that maintains water quality throughreducing retention times and preventing the onset of eutrophic conditions. Principle 5 advisesartificial breaching to be practiced with caution because execution at low water levels encouragessedimentation that reduces the scouring eect of flushing. Principle 6 holds that elevated inflowvolumes from wastewater treatment works or agricultural return flows can increase the frequency ofmouth opening and cause ecological instability. Principle 7 states that water released from dams tosupply the environmental flow cannot mimic the natural flow regime. Principle 8 specifies the needfor short- and long-term data to increase the confidence levels of EFlow assessments, with data tobe collected during the open and closed mouth states. Principle 9 advocates the implementation ofa monitoring program to track the achievement of EFlow objectives as part of a strategic adaptivemanagement cycle. Finally, Principle 10 recommends the adoption of a holistic catchment-to-coastmanagement approach underpinned by collaboration with regulatory authorities and stakeholdersacross a range of sectors. These principles can be used to guide the formulation and managementof EFlows, an essential strategy that links the maintenance of estuarine ecological integrity withsocial well-being.

Application of Open Source Electronics for Measurements of Surface Water Properties in an Estuary: A Case Study of River Jadro, Croatia

There are multiple factors affecting the behavior of water properties in an estuary, including the hydraulic properties of rivers and corresponding receiving water bodies, along with the potential solutes brought by rivers. Although there are various numerical models and analytical approaches to solving particular or holistic problems in estuaries, measurements are inevitably required. In this study, we developed an innovative low-cost probe based on the Arduino platform as an alternative to more expensive measuring systems. Our device is designed to measure position, temperature, and electrical conductivity in multiple realizations, and it consists of a floating container equipped with the following components: an Arduino Mega development board, a power management module, an SD card logging module, a Bluetooth module, a temperature measuring module, a global positioning satellite (GPS) position module, and a newly developed module for measuring electrical conductivity (EC). We emphasize that all used tools are open-source and greatly supported by the worldwide community. We tested our probe during a field campaign conducted at the estuary of River Jadro near Split (Croatia). Nine probes were released at the river mouth and their position, temperature, and EC were monitored and recorded during the experiment, which ended when the probes stopped, due to the river plume attenuation. The same experiment was repeated three times. All of the probes recorded consistent temperature data, while the EC data show more variable behavior, due to the higher sensitivity of the corresponding sensor. This was expected as a part of the natural process in the estuary. The measured data were additionally used to parameterize an analytical model for mean flow velocity and salinity as a proxy concentration. This showed a good match between the experimental results and the theoretical framework. This work, although focused on water surface applications in the near field zone of an estuary, should be considered as a promising step toward the development of innovative and affordable measurement devices.

The development of a national approach to monitoring estuarine health based on multivariate analysis

New Zealand has a complex coastal environment spanning a large latitudinal gradient and three water masses. Here we assess whether multivariate analyses of benthic macrofaunal community composition can be a sensitive approach to assessing relative estuarine health across the country, negating the need for regional indices and reducing reliance on reference sites. Community data were used in separate canonical analyses of principal coordinates to create multivariate models of community responses to gradients in mud content and heavy metal contamination. Both models performed well (R² = 0.81, 0.71), and were unaffected by regional and estuarine typology differences. The models demonstrate a sensitive and standardized approach to assessing estuarine health that allowed separation of the two stressors. This approach could be applied to other stressors, countries or regions.

Trophic Features, Benthic Recovery, and Dominance of the Invasive Mytilopsis Sallei in the Yundang Lagoon (Xiamen, China) Following Long-Term Restoration

A comprehensive set of physicochemical variables in near-bottom water and surface sediments, as well as the soft-bottom macrozoobenthic assemblages were investigated at six sites across the Yundang Lagoon (Southeast China) in November 2012. This lagoon was severely damaged in the 1970s due to domestic and industrial pollution and land reclamation and underwent a massive restoration effort over the past 30 years. Our objectives were to: (1) assess the current trophic and environmental condition of the lagoon; (2) investigate the pattern of spatial variation in the macrozoobenthic assemblages; and (3) assess the benthic recovery in relation to the main environmental gradients and the presence of invasive alien species. Nutrient, chlorophyll-a, biological oxygen demand (BOD5), chemical oxygen demand (CODMn), and total organic carbon (TOC) concentrations were lower than those reported in previous decades, yet organically-enriched conditions occurred at an inner site. From azoic conditions in the 1980s and a few benthic species reported prior to this study, we found a significant increase in benthic diversity with 43 species heterogeneously distributed across the lagoon. The invasive bivalve Mytilopsis sallei was the dominant species, which was associated with the richest benthic assemblage. However, M. sallei is a pest species, and its spatiotemporal distribution should be carefully monitored. These results highlight the central role of the macrozoobenthos in providing important ecological information on the current status of the Yundang Lagoon and as an effective biological tool to follow the recovery’s progress and the future evolution of this highly valued ecosystem.

Quantifying Ecological Integrity of Terrestrial Systems to Inform Management of Multiple-Use Public Lands in the United States

The concept of ecological integrity has been applied widely to management of aquatic systems, but still is considered by many to be too vague and difficult to quantify to be useful for managing terrestrial systems, particularly across broad areas. Extensive public lands in the western United States are managed for diverse uses such as timber harvest, livestock grazing, energy development, and wildlife conservation, some of which may degrade ecological integrity. We propose a method for assessing ecological integrity on multiple-use lands that identifies the components of integrity and levels in the ecological hierarchy where the assessment will focus, and considers existing policies and management objectives. Both natural reference and societally desired environmental conditions are relevant comparison points. We applied the method to evaluate the ecological integrity of shrublands in Nevada, yielding an assessment based on six indicators of ecosystem structure, function, and composition, including resource- and stressor-based indicators measured at multiple scales. Results varied spatially and among indicators. Invasive plant cover and surface development were highest in shrublands in northwest and southeast Nevada. Departure from reference conditions of shrubland area, composition, patch size, and connectivity was highest in central and northern Nevada. Results may inform efforts to control invasive species and restore shrublands on federal lands in Nevada. We suggest that ecological integrity assessments for multiple-use lands be grounded in existing policies and monitoring programs, incorporate resource- and stressor-based metrics, rely on publicly available data collected at multiple spatial scales, and quantify both natural reference and societally desired resource conditions.

Benthic quality assessment using M-AMBI in the Seto Inland Sea, Japan

Benthic invertebrates that inhabit the seafloor respond to anthropogenic and natural stresses, and are good indicators for assessing the benthic ecological status. We evaluated the ecosystem health of the Seto Inland Sea based on the multivariate AZTI Marine Biotic Index (M-AMBI), being its first application in a Japanese coastal sea with numerous endemic species. From the 415 locations studied, we were able to use M-AMBI in 384 sites (92.5% in all sites). The result revealed a statistically significant correlation among biotic indices including AMBI, M-AMBI, Richness, and H' (p < 0.01). Most of the physico-chemical parameters of the sediment (water content, total organic carbon (TOC) content, sulfide content, mud content, and oxidation-reduction potential (ORP)) were significantly correlated with each other excluding sediment temperature. The M-AMBI was significantly correlated with physico-chemical variables including water content, TOC content, sulfide content, and ORP. We found that the sites classified into the organically enriched cluster, and having high contents of TOC, mud, and sulfide and negative ORP, corresponded with sites that had significantly low M-AMBI values (bad-poor ecological status). Conversely, sites in the unpolluted sandy cluster were assigned high M-AMBI values (high-good ecological status). Therefore, M-AMBI would be a useful biotic index in Japanese coasts due to the representation of the comprehensive sediment quality.

A practical approach to improve the statistical performance of surface water monitoring networks

The representativeness of aquatic ecosystem monitoring and the precision of the assessment results are of high importance when implementing the EU's Water Framework Directive that aims to secure a good status of waterbodies in Europe. However, adapting monitoring designs to answer the objectives and allocating the sampling resources effectively are seldom practiced. Here, we present a practical solution how the sampling effort could be re-allocated without decreasing the precision and confidence of status class assignment. For demonstrating this, we used a large data set of 272 intensively monitored Finnish lake, coastal, and river waterbodies utilizing an existing framework for quantifying the uncertainties in the status class estimation. We estimated the temporal and spatial variance components, as well as the effect of sampling allocation to the precision and confidence of chlorophyll-a and total phosphorus. Our results suggest that almost 70% of the lake and coastal waterbodies, and 27% of the river waterbodies, were classified without sufficient confidence in these variables. On the other hand, many of the waterbodies produced unnecessary precise metric means. Thus, reallocation of sampling effort is needed. Our results show that, even though the studied variables are among the most monitored status metrics, the unexplained variation is still high. Combining multiple data sets and using fixed covariates would improve the modeling performance. Our study highlights that ongoing monitoring programs should be evaluated more systematically, and the information from the statistical uncertainty analysis should be brought concretely to the decision-making process.

Searching variables to assess recreational water quality: the presence of infectious human enterovirus and its correlation with the main variables of water pollution by multivariate statistical approach in Córdoba, Argentina

Surface waters are used by local populations for different purposes, such as recreational activities, water source for human and animal consumption, and irrigation among others, which lead to the need for management strategies on water health and associated risks. During this study, we investigated physicochemical parameters, fecal coliform bacteria, and infectious human enterovirus detection to determine the water quality in different beaches (categorized as an urban area, non-urban areas, and an intermediate position) from San Roque Dam, in Argentina. Multivariate techniques were applied. Principal component analysis allowed identification of subgroup of variables responsible for the water quality. A cluster analysis and multivariate analysis of variance showed the urban beach as the highest pollution area. The following variables (measured at the urban beach) would be enough to describe the quality of the aquatic body: nitrites, fecal coliforms, total phosphorous, and infectious human enterovirus. The infectious human enterovirus was an independent variable detected in 69.1% of the samples showing a steady frequency of detection during the whole period studied and could identify human fecal contaminations as a source of water pollution. The selected variables would contribute to water quality regarding the risk for human health using San Roque dam waters for recreational propose.

An ecological status indicator for all time: Are AMBI and M-AMBI effective indicators of change in deep time?

Increasingly environmental management seeks to limit the impacts of human activities on ecosystems relative to some 'reference' condition, which is often the presumed pre-impacted state, however such information is limited. We explore how marine ecosystems in deep time (Late Jurassic) are characterised by AZTI's Marine Biotic Index (AMBI), and how the indices responded to natural perturbations. AMBI is widely used to detect the impacts of human disturbance and to establish management targets, and this study is the first application of these indices to a fossil fauna. Our results show AMBI detected changes in past seafloor communities (well-preserved fossil deposits) that underwent regional deoxygenation in a manner analogous to those experiencing two decades of organic pollution. These findings highlight the potential for palaeoecological data to contribute to reconstructions of pre-human marine ecosystems, and hence provide information to policy makers and regulators with greater temporal context on the nature of 'pristine' marine ecosystems.

Putting on a bow-tie to sort out who does what and why in the complex arena of marine policy and management

Marine policy and management has to cope with a plethora of human activities that cause pressures leading to changes to the natural and human systems. Accordingly, it requires many policy and management responses to address traditional, cultural, social, ecological, technical, and economic policy objectives. Because of this, we advocate that a fully-structured approach using the IEC/ISO 31010 Bow-tie analysis will allow all elements to be integrated for a cost-effective system. This industry-standard system, described here with examples for the marine environment, will fulfil many of the demands by the users and uses of the marine system and the regulators of those users and uses. It allows for bridging several aspects: the management and environmental sciences, the management complexity and governance demands, the natural and social sciences and socio-economics and outcomes. Most importantly, the use of the Bow-tie approach bridges systems analysis and ecosystem complexity. At a time when scientific decisions in policy making and implementation are under question, we conclude that it provides a rigorous, transparent and defendable system of decision-making.

Translating Ecological Integrity terms into operational language to inform societies

It is crucial that societies are informed on the risks of impoverished ecosystem health for their well-being. For this purpose, Ecological Integrity (EI) is a useful concept that seeks to capture the complex nature of ecosystems and their interaction with social welfare. But the challenge remains to measure EI and translate scientific terminology into operational language to inform society. We propose an approach that simplifies marine ecosystem complexity by applying scientific knowledge to identify which components reflect the state or state change of ecosystems. It follows a bottom-up structure that identifies, based on expert knowledge, biological components related with past and present changing conditions. It is structured in 5 stages that interact in an adaptive way: stage 1, in situ observations suggest changes could be happening; stage 2 explores available data that represent EI; stage 3, experts' workshops target the identification of the minimum set of variables needed to define EI, or the risk of losing EI; an optative stage 4, where deviance from EI, or risk of deviance, is statistically assessed; stage 5, findings are communicated to society. We demonstrate the framework effectiveness in three case studies, including a data poor situation, an area where lack of reference sites hampers the identification of historical changes, and an area where diffuse sources of stress make it difficult to identify simple relationships with of ecological responses. The future challenge is to operationalise the approach and trigger desirable society actions to strengthen a social-nature link.