Waking State: Rapid Variations Modulate Neural and Behavioral Responses

Sleuthing subjectivity: a review of covert measures of consciousness

Consciousness is private. Although conscious beings directly access their own conscious experiences, the consciousness of others must be inferred through overt report: observable behaviours - such as overt facial expressions, vocalizations and body gestures - that suggest the level, state and content of consciousness. However, overt report is limited because it can be erroneous (for example, resulting from wilful deception or being subject to recall error), absent (for example, during sleep and paralysis) or conflict with research goals (for example, in no-report paradigms and resting-state studies). These limitations encourage the search for covert measures of consciousness: physiological signals that disclose consciousness without relying on overt behaviour. This Review highlights emerging covert measures of consciousness in humans, including eye, skin, respiratory and heart signals. We also address the challenge of distinguishing physiological signals linked to conscious versus unconscious neural processing. Finally, we consider the ethical implications of infringing on the innate privacy of consciousness.

Disentangling sources of variability in decision-making

Even the most highly-trained observers presented with identical choice-relevant stimuli will reliably exhibit substantial trial-to-trial variability in the timing and accuracy of their choices. Despite being a pervasive feature of choice behaviour and a prominent phenotype for numerous clinical disorders, the capability to disentangle the sources of such intra-individual variability (IIV) remains limited. In principle, computational models of decision-making offer a means of parsing and estimating these sources, but methodological limitations have prevented this potential from being fully realized in practice. In this Review, we first discuss current limitations of algorithmic models for understanding variability in decision-making behaviour. We then highlight recent advances in behavioural paradigm design, novel analyses of cross-trial behavioural and neural dynamics, and the development of neurally grounded computational models that are now making it possible to link distinct components of IIV to well-defined neural processes. Taken together, we demonstrate how these methods are opening up new avenues for systematically analysing the neural origins of IIV, paving the way for a more refined, holistic understanding of decision-making in health and disease.

Thalamic feedback shapes brain responses evoked by cortical stimulation in mice and humans

Cortical stimulation with single pulses is a common technique in clinical practice and research. However, we still do not understand the extent to which it engages subcortical circuits that may contribute to the associated evoked potentials (EPs). Here we show that cortical stimulation generates remarkably similar EPs in humans and mice, with a late component similarly modulated by the state of the targeted cortico-thalamic network. We then optogenetically dissect the underlying circuit in mice, demonstrating that the EPs late component is caused by a thalamic hyperpolarization and rebound. The magnitude of this late component correlates with bursting frequency and synchronicity of thalamic neurons, modulated by the subject's behavioral state. A simulation of the thalamo-cortical circuit highlights that both intrinsic thalamic currents as well as cortical and thalamic GABAergic neurons contribute to this response profile. We conclude that single pulse cortical stimulation engages cortico-thalamo-cortical circuits largely preserved across different species and stimulation modalities.

Neuromorphic algorithms for brain implants: a review

Neuromorphic computing technologies are about to change modern computing, yet most work thus far has emphasized hardware development. This review focuses on the latest progress in algorithmic advances specifically for potential use in brain implants. We discuss current algorithms and emerging neurocomputational models that, when implemented on neuromorphic hardware, could match or surpass traditional methods in efficiency. Our aim is to inspire the creation and deployment of models that not only enhance computational performance for implants but also serve broader fields like medical diagnostics and robotics inspiring next generations of neural implants.

The Medial Olivocochlear Efferent Pathway Potentiates Cochlear Amplification in Response to Hearing Loss

The mammalian cochlea receives efferent feedback from the brain. Many functions for this feedback have been hypothesized, including on short timescales, such as mediating attentional states, and long timescales, such as buffering acoustic trauma. Testing these hypotheses has been impeded by an inability to make direct measurements of efferent effects in awake animals. Here, we assessed the role of the medial olivocochlear (MOC) efferent nerve fibers on cochlear amplification by measuring organ of Corti vibratory responses to sound in both sexes of awake and anesthetized mice. We studied long-term effects by genetically ablating the efferents and/or afferents. Cochlear amplification increased with deafferentation using VGLUT3-/- mice, but only when the efferents were intact, associated with increased activity within OHCs and supporting cells. Removing both the afferents and the efferents using VGLUT3-/- Alpha9-/- mice did not cause this effect. To test for short-term effects, we recorded sound-evoked vibrations while using pupillometry to measure neuromodulatory brain state. We found no state dependence of cochlear amplification or of the auditory brainstem response. However, state dependence was apparent in the downstream inferior colliculus. Thus, MOC efferents upregulate cochlear amplification chronically with hearing loss, but not acutely with brain state fluctuations. This pathway may partially compensate for hearing loss while mediating associated symptoms, such as tinnitus and hyperacusis.

Preference-independent saliency map in the mouse superior colliculus

Detecting salient stimuli in a visual scene is crucial for animal survival, yet how the brain encodes visual saliency remains unclear. Here, using two-photon calcium imaging, we reveal a preference-independent saliency map in the superficial superior colliculus of awake mice. Salient stimuli evoke stronger responses than uniform stimuli in both excitatory and inhibitory neurons, with similar encoding patterns across both cell types. The strongest response occurs when a salient stimulus is centered within the receptive field, with contextual effects extending approximately 40°. Response amplitude scales with saliency strength but remains independent of neurons' orientation or motion direction preferences. Notably, saliency-encoding neurons exhibit weak orientation and direction selectivity, indicating a complementary relationship between saliency and feature maps. Importantly, this preference-independent saliency encoding does not require cortical inputs. These findings provide insights into the neural mechanisms underlying visual saliency detection.

Transcriptomic and spatial GABAergic neuron subtypes in zona incerta mediate distinct innate behaviors

Understanding the anatomical connection and behaviors of transcriptomic neuron subtypes is critical to delineating cell type-specific functions in the brain. Here we integrated single-nucleus transcriptomic sequencing, in vivo circuit mapping, optogenetic and chemogenetic approaches to dissect the molecular identity and function of heterogeneous GABAergic neuron populations in the zona incerta (ZI) in mice, a region involved in modulating various behaviors. By microdissecting ZI for transcriptomic and spatial gene expression analyses, our results revealed two non-overlapping Ecel1- and Pde11a-expressing GABAergic neurons with dominant expression in the rostral and medial zona incerta (ZIrEcel1 and ZImPde11a), respectively. The GABAergic projection from ZIrEcel1 to periaqueductal gray mediates self-grooming, while the GABAergic projection from ZImPde11a to the oral part of pontine reticular formation promotes transition from sleep to wakefulness. Together, our results revealed the molecular markers, spatial organization and specific neuronal circuits of two discrete GABAergic projection neuron populations in segregated subregions of the ZI that mediate distinct innate behaviors, advancing our understanding of the functional organization of the brain.

Sensory Encoding Alternates With Hippocampal Ripples across Cycles of Forebrain Spiking Cascades

The brain's response to external events depends on its internal arousal states, which are dynamically governed by neuromodulatory systems and have recently been linked to coordinated spike timing cascades in widespread brain networks. At rest, both arousal fluctuations and spiking cascades are evident throughout the forebrain and play out over multisecond time scales. Here, by analyzing large-scale neural recording data collected by the Allen Institute, it is demonstrated that these intrinsic processes persist across the mouse brain even during periods of continuous visual stimulation. In the stationary animal, each quasi-periodic cascade cycle systematically influenced 1) the efficacy of encoding in visually responsive brain areas and 2) the incidence of memory-related hippocampal ripples. During this cycle, the phase of high arousal is marked by high efficiency in visual encoding whereas the phase of low arousal is marked by the occurrence of hippocampal ripples. However, during bouts of active locomotion, this cycle is abolished and brain maintained a state of elevated visual coding efficiency, with ripples being nearly absent. It is hypothesized that the infra-slow cascade dynamics reflect an adaptive cycle of alternating exteroceptive sensory sampling and internal mnemonic function that persistently pervades the forebrain, only stopping during active exploration of the environment.

Dynamics of evoked responses in hippocampal pathways are encoded by the duration of vigilance states

Interactions among brain areas are essential to most cognitive functions. Neuronal interactions between these areas depend on the modulation of synaptic strength. However, this modulation remains poorly understood. We recorded evoked responses at four hippocampal pathways in freely moving male rats across 24 hours. We show that synaptic strength at these pathways oscillates with a very slow periodicity and correlates with the durations of vigilance states. A model based on hypnogram data and synaptic strength at one pathway was able to predict the evolution of synaptic strength at most pathways, except one. These results reveal that the temporal succession of vigilance states may contribute to memory processes through rapid modulation of synaptic strength at several pathways during the sleep-wakefulness cycle, suggesting that memory processes are not only dependent on sleep amount but also on sleep architecture.

Environmental context influences visual processing in thalamus

Behavioral state modulates neural activity throughout the visual system.1,2,3 This is largely due to changes in arousal that alter internal brain states.4,5,6,7,8,9,10 Much is known about how these internal factors influence visual processing,7,8,9,10,11 but comparatively less is known about the role of external environmental contexts.12 Environmental contexts can promote or prevent certain actions,13 and it remains unclear if and how this affects visual processing. Here, we addressed this question in the thalamus of awake, head-fixed mice while they viewed stimuli but remained stationary in two different environmental contexts: either a cylindrical tube or a circular running wheel that enabled locomotion. We made silicon probe recordings in the dorsal lateral geniculate nucleus (dLGN) while simultaneously measuring multiple metrics of arousal changes so that we could control for these across contexts. We found surprising differences in spatial and temporal processing in dLGN across contexts. The wheel context (versus tube) showed elevated baseline activity and faster but less spatially selective visual responses; however, these visual processing differences disappeared if the wheel no longer enabled locomotion. Our results reveal an unexpected influence of the physical environmental context on fundamental aspects of early visual processing, even in otherwise identical states of alertness and stillness.

Locomotion-dependent auditory gating to the parietal cortex guides multisensory decisions

Decision-making in mammals fundamentally relies on integrating multiple sensory inputs, with conflicting information resolved flexibly based on a dominant sensory modality. However, the neural mechanisms underlying state-dependent changes in sensory dominance remain poorly understood. Our study demonstrates that locomotion in mice shifts auditory-dominant decisions toward visual dominance during audiovisual conflicts. Using circuit-specific calcium imaging and optogenetic manipulations, we found that weakened visual representation in the posterior parietal cortex (PPC) leads to auditory-dominant decisions in stationary mice. Prolonged locomotion, however, promotes visual dominance by inhibiting auditory cortical neurons projecting to the PPC (ACPPC). This shift is mediated by secondary motor cortical neurons projecting to the auditory cortex (M2AC), which specifically inhibit ACPPC neurons without affecting auditory cortical projections to the striatum (ACSTR). Our findings reveal the neural circuit mechanisms underlying auditory gating to the association cortex depending on locomotion states, providing insights into the state-dependent changes in sensory dominance during multisensory decision-making.

Neural Correlates of Perceptual Plasticity in the Auditory Midbrain and Thalamus

Hearing is an active process in which listeners must detect and identify sounds, segregate and discriminate stimulus features, and extract their behavioral relevance. Adaptive changes in sound detection can emerge rapidly, during sudden shifts in acoustic or environmental context, or more slowly as a result of practice. Although we know that context- and learning-dependent changes in the sensitivity of auditory cortical (ACX) neurons support many aspects of perceptual plasticity, the contribution of subcortical auditory regions to this process is less understood. Here, we recorded single- and multiunit activity from the central nucleus of the inferior colliculus (ICC) and the ventral subdivision of the medial geniculate nucleus (MGV) of male and female Mongolian gerbils under two different behavioral contexts: as animals performed an amplitude modulation (AM) detection task and as they were passively exposed to AM sounds. Using a signal detection framework to estimate neurometric sensitivity, we found that neural thresholds in both regions improve during task performance, and this improvement is largely driven by changes in the firing rate rather than phase locking. We also found that ICC and MGV neurometric thresholds improve as animals learn to detect small AM depths during a multiday perceptual training paradigm. Finally, we revealed that in the MGV, but not the ICC, context-dependent enhancements in AM sensitivity grow stronger during perceptual training, mirroring prior observations in the ACX. Together, our results suggest that the auditory midbrain and thalamus contribute to changes in sound processing and perception over rapid and slow timescales.

Establishing In-vivo brain microdialysis for comparing concentrations of a variety of cortical neurotransmitters in the awake rhesus macaque between different cognitive states

BACKGROUND

Neuronal activity is modulated by behavior and cognitive processes. The combination of several neurotransmitter systems, acting directly or indirectly on specific populations of neurons, underlie such modulations. Most studies with non-human primates (NHPs) fail to capture this complexity, partly due to the lack of adequate methods for reliably and simultaneously measuring a broad spectrum of neurotransmitters while the animal engages in behavioral tasks.

NEW METHOD

To address this gap, we introduce a novel implementation of brain microdialysis (MD), employing semi-chronically implanted guides and probes in awake, behaving NHPs facilitated by removable insets within a standard recording chamber over extrastriate visual cortex (here, the visual middle temporal area (MT)). This approach allows flexible access to diverse brain regions, including areas deep within the sulcus.

RESULTS

Reliable concentration measurements of GABA, glutamate, norepinephrine, epinephrine, dopamine, serotonin, and choline were achieved from small sample volumes (<20 µl) using ultra-performance liquid chromatography with electrospray ionization-mass spectrometry (UPLC-ESI-MS). Comparing two behavioral states - 'active' and 'inactive', we observe subtle concentration variations between the two behavioral states and a greater variability of concentrations in the active state. Additionally, we find positively and negatively correlated concentration changes for neurotransmitter pairs between the behavioral states.

CONCLUSIONS

Therefore, this MD setup allows insights into the neurochemical dynamics in awake primates, facilitating comprehensive investigations into the roles and the complex interplay of neurotransmitters in cognitive and behavioral functions.

The brain's action-mode network

The brain is always intrinsically active, using energy at high rates while cycling through global functional modes. Awake brain modes are tied to corresponding behavioural states. During goal-directed behaviour, the brain enters an action-mode of function. In the action-mode, arousal is heightened, attention is focused externally and action plans are created, converted to goal-directed movements and continuously updated on the basis of relevant feedback, such as pain. Here, we synthesize classical and recent human and animal evidence that the action-mode of the brain is created and maintained by an action-mode network (AMN), which we had previously identified and named the cingulo-opercular network on the basis of its anatomy. We discuss how rather than continuing to name this network anatomically, annotating it functionally as controlling the action-mode of the brain increases its distinctiveness from spatially adjacent networks and accounts for the large variety of the associated functions of an AMN, such as increasing arousal, processing of instructional cues, task general initiation transients, sustained goal maintenance, action planning, sympathetic drive for controlling physiology and internal organs (connectivity to adrenal medulla), and action-relevant bottom-up signals such as physical pain, errors and viscerosensation. In the functional mode continuum of the awake brain, the AMN-generated action-mode sits opposite the default-mode for self-referential, emotional and memory processing, with the default-mode network and AMN counterbalancing each other as yin and yang.

Physically activated modes of attentional control

As we navigate through the day, our attentional control processes are constantly challenged by changing sensory information, goals, expectations, and motivations. At the same time, our bodies and brains are impacted by changes in global physiological state that can influence attentional processes. Based on converging lines of evidence from brain recordings in physically active humans and nonhumans, we propose a new framework incorporating at least two physically activated modes of attentional control in humans: altered gain control and differential neuromodulation of control networks. We discuss the implications of this framework for understanding a broader range of states and cognitive functions studied both in the laboratory and in the wild.

Pupil size reveals arousal level fluctuations in human sleep

Recent animal research has revealed the intricate dynamics of arousal levels that are important for maintaining proper sleep resilience and memory consolidation. In humans, changes in arousal level are believed to be a determining characteristic of healthy and pathological sleep but tracking arousal level fluctuations has been methodologically challenging. Here we measured pupil size, an established indicator of arousal levels, by safely taping the right eye open during overnight sleep and tested whether pupil size affects cortical response to auditory stimulation. We show that pupil size dynamics change as a function of important sleep events across different temporal scales. In particular, our results show pupil size to be inversely related to the occurrence of sleep spindle clusters, a marker of sleep resilience. Additionally, we found pupil size prior to auditory stimulation to influence the evoked response, most notably in delta power, a marker of several restorative and regenerative functions of sleep. Recording pupil size dynamics provides insights into the interplay between arousal levels and sleep oscillations.

Testing the role of spontaneous activity in visuospatial perception with patterned optogenetics

A major debate in the field of consciousness pertains to whether neuronal activity or rather the causal structure of neural circuits underlie the generation of conscious experience. The former position is held by theoretical accounts of consciousness based on the predictive processing framework (such as neurorepresentationalism and active inference), while the latter is posited by the integrated information theory. This protocol describes an experiment, part of a larger adversarial collaboration, that was designed to address this question through a combination of behavioral tests in mice, functional imaging, patterned optogenetics and electrophysiology. The experiment will directly test if optogenetic inactivation of a portion of the visual cortex not responding to behaviorally relevant stimuli will affect the perception of the spatial distribution of these stimuli, even when the neurons being inactivated display no or very low spiking activity, so low that it does not induce a significant effect on other cortical areas. The results of the experiment will be compared against theoretical predictions, and will provide a major contribution towards understanding what the neuronal substrate of consciousness is.

Impact of hearing loss on brain signal variability in older adults under different auditory load conditions

Introduction

The moment-by-moment variability in brain signals, a newly recognized indicator, demonstrates both the adaptability of an individual's brain as a unique trait and the distribution of neural resources within that individual in response to constantly shifting task requirements. This study aimed to explore brain signal variability in older adults using oxyhemoglobin (HbO) variability derived from fNIRS during tasks with increasing signal-to-noise ratio (SNR) loads and to assess the effects of varying degrees of hearing loss on speech recognition performance and related brain signal variability patterns.

Methods

Eighty-one participants were categorized into three groups: healthy controls (n = 30, aged 65.5 ± 3.4), mild hearing loss (n = 25, aged 66.0 ± 3.7), and moderate to severe hearing loss (n = 26, aged 67.5 ± 3.7). Speech perception was tested under quiet, 5 dB SNR, and 0 dB SNR conditions.

Results

Results revealed that the brain signal variability increased with higher SNR loads in healthy older adults, indicating enhanced neural resource allocation with the SNR load. In contrast, we found that hearing loss reduced brain signal variability during speech recognition tasks, especially in noisy conditions, in the mild hearing loss and moderate to severe hearing loss groups, possibly indicating decreased neural processing efficiency. Additionally, a positive correlation between brain signal variability and speech recognition performance was observed in healthy control participants across all SNR conditions, suggesting that brain signal variability could dynamically respond to the precise level of auditory environment demands. However, this relationship was only significant at the 5 dB SNR condition in hearing loss groups.

Discussion

Taken together, this study underscores the significant impact of hearing loss on brain signal variability modulation in auditory cognitive tasks and highlights the need for further research to understand the underlying neural mechanisms.

Higher-order thalamic input to cortex selectively conveys state information

Communication among neocortical areas is largely thought to be mediated by long-range synaptic interactions between cortical neurons, with the thalamus providing only an initial relay of information from the sensory periphery. Higher-order thalamic nuclei receive strong synaptic inputs from the cortex and send robust projections back to other cortical areas, providing a distinct and potentially critical route for corticocortical communication. However, the relative contributions of corticocortical and thalamocortical inputs to higher-order cortical function remain unclear. Using imaging of neurons and axon terminals in combination with optogenetic manipulations, we find that the higher-order visual thalamus of mice has a unique impact on the posterior medial visual cortex (PM). Whereas corticocortical projections from lower cortical areas convey robust visual information to PM, higher-order thalamocortical projections convey information about global arousal state. Together, these findings suggest a key role for the higher-order thalamus in providing contextual signals that may flexibly modulate cortical sensory processing.

Hierarchical behavioral analysis framework as a platform for standardized quantitative identification of behaviors

Behavior is composed of modules that operate based on inherent logic. Understanding behavior and its neural mechanisms is facilitated by clear structural behavioral analysis. Here, we developed a hierarchical behavioral analysis framework (HBAF) that efficiently reveals the organizational logic of these modules by analyzing high-dimensional behavioral data. By creating a spontaneous behavior atlas for male and female mice, we discovered that spontaneous behavior patterns are hardwired, with sniffing serving as the hub node for movement transitions. The sniffing-to-grooming ratio accurately distinguished the spontaneous behavioral states in a high-throughput manner. These states are influenced by emotional status, circadian rhythms, and lighting conditions, leading to unique behavioral characteristics, spatiotemporal features, and dynamic patterns. By implementing the straightforward and achievable spontaneous behavior paradigm, HBAF enables swift and accurate assessment of animal behavioral states and bridges the gap between a theoretical understanding of the behavioral structure and practical analysis using comprehensive multidimensional behavioral information.

Arousal as a universal embedding for spatiotemporal brain dynamics

Neural activity in awake organisms shows widespread and spatiotemporally diverse correlations with behavioral and physiological measurements. We propose that this covariation reflects in part the dynamics of a unified, multidimensional arousal-related process that regulates brain-wide physiology on the timescale of seconds. By framing this interpretation within dynamical systems theory, we arrive at a surprising prediction: that a single, scalar measurement of arousal (e.g., pupil diameter) should suffice to reconstruct the continuous evolution of multidimensional, spatiotemporal measurements of large-scale brain physiology. To test this hypothesis, we perform multimodal, cortex-wide optical imaging and behavioral monitoring in awake mice. We demonstrate that spatiotemporal measurements of neuronal calcium, metabolism, and brain blood-oxygen can be accurately and parsimoniously modeled from a low-dimensional state-space reconstructed from the time history of pupil diameter. Extending this framework to behavioral and electrophysiological measurements from the Allen Brain Observatory, we demonstrate the ability to integrate diverse experimental data into a unified generative model via mappings from an intrinsic arousal manifold. Our results support the hypothesis that spontaneous, spatially structured fluctuations in brain-wide physiology-widely interpreted to reflect regionally-specific neural communication-are in large part reflections of an arousal-related process. This enriched view of arousal dynamics has broad implications for interpreting observations of brain, body, and behavior as measured across modalities, contexts, and scales.

Interneuronal modulations as a functional switch for cortical computations: mechanisms and implication for disease

Understanding cortical inhibition and its diverse roles remains a key challenge in neurophysiological research. Traditionally, inhibition has been recognized for controlling the stability and rhythmicity of network dynamics, or refining the spatiotemporal properties of cortical representations. In this perspective, we propose that specific types of interneurons may play a complementary role, by modulating the computational properties of neural networks. We review experimental and theoretical evidence, mainly from rodent sensory cortices, that supports this view. Additionally, we explore how dysfunctions in these interneurons may disrupt the network's ability to switch between computational modes, impacting the flexibility of cortical processing and potentially contributing to various neurodevelopmental and psychiatric disorders.

Performance modulations phase-locked to action depend on internal state

Previous studies have shown that perceptual performance can be modulated at specific frequencies phase-locked to self-paced motor actions, but findings have been inconsistent. To investigate this effect at the population level, we tested 50 participants who performed a self-paced button press followed by a threshold-level detection task, using both fixed- and random-effects analyses. Contrary to expectations, the aggregated data showed no significant action-related modulation. However, when accounting for internal states, we found that trials during periods of low performance or following a missed detection exhibited significant modulation at approximately 17 Hz. Additionally, participants with no false alarms showed similar modulation. These effects were significant in random effects tests, suggesting that they generalize to the population. Our findings indicate that action-related perceptual modulations are not always detectable but may emerge under specific internal conditions, such as lower attentional engagement or higher decision criteria, particularly in the beta-frequency range.

Environmental context sculpts spatial and temporal visual processing in thalamus

Behavioral state modulates neural activity throughout the visual system1-3. This is largely due to changes in arousal that alter internal brain state4-10. Much is known about how these internal factors influence visual processing7-11, but comparatively less is known about the role of external environmental contexts12. Environmental contexts can promote or prevent certain actions13, and it remains unclear if and how this affects visual processing. Here, we addressed this question in the thalamus of awake head-fixed mice while they viewed stimuli but remained stationary in two different environmental contexts: either a cylindrical tube, or a circular running wheel that enabled locomotion. We made silicon probe recordings in the dorsal lateral geniculate nucleus (dLGN) while simultaneously measuring multiple metrics of arousal changes, so that we could control for them across contexts. We found surprising differences in spatial and temporal processing in dLGN across contexts. The wheel context (versus tube) showed elevated baseline activity, and faster but less spatially selective visual responses; however, these visual processing differences disappeared if the wheel no longer enabled locomotion. Our results reveal an unexpected influence of the physical environmental context on fundamental aspects of early visual processing, even in otherwise identical states of alertness and stillness.

The lateral thalamus: a bridge between multisensory processing and naturalistic behaviors

The lateral thalamus (LT) receives input from primary sensory nuclei and responds to multimodal stimuli. The LT is also involved in regulating innate and social behaviors through its projections to cortical and limbic networks. However, the importance of multisensory processing within the LT in modulating behavioral output has not been explicitly addressed. Here, we discuss recent findings primarily from rodent studies that extend the classical view of the LT as a passive relay, by underscoring its involvement in associating multimodal features and encoding the salience, valence, and social relevance of sensory signals. We propose that the primary function of the LT is to integrate sensory and non-sensory aspects of multisensory input to gate naturalistic behaviors.

Pupil size correlates with heart rate, skin conductance, pulse wave amplitude, and respiration responses during emotional conflict and valence processing

Pupil size is a non-invasive index for autonomic arousal mediated by the locus coeruleus-norepinephrine (LC-NE) system. While pupil size and its derivative (velocity) are increasingly used as indicators of arousal, limited research has investigated the relationships between pupil size and other well-known autonomic responses. Here, we simultaneously recorded pupillometry, heart rate, skin conductance, pulse wave amplitude, and respiration signals during an emotional face-word Stroop task, in which task-evoked (phasic) pupil dilation correlates with LC-NE responsivity. We hypothesized that emotional conflict and valence would affect pupil and other autonomic responses, and trial-by-trial correlations between pupil and other autonomic responses would be observed during both tonic and phasic epochs. Larger pupil dilations, higher pupil size derivative, and lower heart rates were observed in the incongruent condition compared to the congruent condition. Additionally, following incongruent trials, the congruency effect was reduced, and arousal levels indexed by previous-trial pupil dilation were correlated with subsequent reaction times. Furthermore, linear mixed models revealed that larger pupil dilations correlated with higher heart rates, higher skin conductance responses, higher respiration amplitudes, and lower pulse wave amplitudes on a trial-by-trial basis. Similar effects were seen between positive and negative valence conditions. Moreover, tonic pupil size before stimulus presentation significantly correlated with all other tonic autonomic responses, whereas tonic pupil size derivative correlated with heart rates and skin conductance responses. These results demonstrate a trial-by-trial relationship between pupil dynamics and other autonomic responses, highlighting pupil size as an effective real-time index for autonomic arousal during emotional conflict and valence processing.

Is the impact of spontaneous movements on early visual cortex species specific?

Recent studies in non-human primates do not find pronounced signals related to the animal's own body movements in the responses of neurons in the visual cortex. This is notable because such pronounced signals have been widely observed in the visual cortex of mice. Here, we discuss factors that may contribute to the differences observed between species, such as state, slow neural drift, eccentricity, and changes in retinal input. The interpretation of movement-related signals in the visual cortex also exemplifies the challenge of identifying the sources of correlated variables. Dissecting these sources is central for understanding the functional roles of movement-related signals. We suggest a functional classification of the possible sources, aimed at facilitating cross-species comparative approaches to studying the neural mechanisms of vision during natural behavior.

Spontaneous slow cortical potentials and brain oscillations independently influence conscious visual perception

Perceptual awareness results from an intricate interaction between external sensory input and the brain's spontaneous activity. Pre-stimulus ongoing activity influencing conscious perception includes both brain oscillations in the alpha (7 to 14 Hz) and beta (14 to 30 Hz) frequency ranges and aperiodic activity in the slow cortical potential (SCP, <5 Hz) range. However, whether brain oscillations and SCPs independently influence conscious perception or do so through shared mechanisms remains unknown. Here, we addressed this question in 2 independent magnetoencephalography (MEG) data sets involving near-threshold visual perception tasks in humans using low-level (Gabor patches) and high-level (objects, faces, houses, animals) stimuli, respectively. We found that oscillatory power and large-scale SCP activity influence conscious perception through independent mechanisms that do not have shared variance. In addition, through mediation analysis, we show that pre-stimulus oscillatory power and SCP activity have different relations to pupil size-an index of arousal-in their influences on conscious perception. Together, these findings suggest that oscillatory power and SCPs independently contribute to perceptual awareness, with distinct relations to pupil-linked arousal.

Repairing Misperceptions of Words Early in a Sentence is More Effortful Than Repairing Later Words, Especially for Listeners With Cochlear Implants

The process of repairing misperceptions has been identified as a contributor to effortful listening in people who use cochlear implants (CIs). The current study was designed to examine the relative cost of repairing misperceptions at earlier or later parts of a sentence that contained contextual information that could be used to infer words both predictively and retroactively. Misperceptions were enforced at specific times by replacing single words with noise. Changes in pupil dilation were analyzed to track differences in the timing and duration of effort, comparing listeners with typical hearing (TH) or with CIs. Increases in pupil dilation were time-locked to the moment of the missing word, with longer-lasting increases when the missing word was earlier in the sentence. Compared to listeners with TH, CI listeners showed elevated pupil dilation for longer periods of time after listening, suggesting a lingering effect of effort after sentence offset. When needing to mentally repair missing words, CI listeners also made more mistakes on words elsewhere in the sentence, even though these words were not masked. Changes in effort based on the position of the missing word were not evident in basic measures like peak pupil dilation and only emerged when the full-time course was analyzed, suggesting the timing analysis adds new information to our understanding of listening effort. These results demonstrate that some mistakes are more costly than others and incur different levels of mental effort to resolve the mistake, underscoring the information lost when characterizing speech perception with simple measures like percent-correct scores.

Strength of Low-Frequency EEG Phase Entrainment to External Stimuli Is Associated with Fluctuations in the Brain's Internal State

The brain attends to environmental rhythms by aligning the phase of internal oscillations. However, the factors underlying fluctuations in the strength of this phase entrainment remain largely unknown. In the present study, we examined whether the strength of low-frequency electroencephalography (EEG) phase entrainment to rhythmic stimulus sequences varied with the pupil size and posterior alpha-band power, thought to reflect the arousal level and excitability of posterior cortical brain areas, respectively. We recorded the pupil size and scalp EEG while participants carried out an intermodal selective attention task, in which they were instructed to attend to a rhythmic sequence of visual or auditory stimuli and ignore the other perceptual modality. As expected, intertrial phase coherence (ITC), a measure of entrainment strength, was larger for the task-relevant than for the task-irrelevant modality. Across the experiment, the pupil size and posterior alpha power were strongly linked with each other. Interestingly, ITC tracked both variables: larger pupil size was associated with a selective increase in entrainment to the task-relevant stimulus sequence, whereas larger posterior alpha power was associated with a decrease in phase entrainment to both the task-relevant and task-irrelevant stimulus sequences. Exploratory analyses showed that a temporal relation between ITC and posterior alpha power emerged in the time periods around pupil maxima and pupil minima. These results indicate that endogenous sources contribute distinctly to the fluctuations of EEG phase entrainment.

Aperiodic spectral slope tracks the effects of brain state on saliency responses in the human auditory cortex

Alteration of responses to salient stimuli occurs in a wide range of brain disorders and may be rooted in pathophysiological brain state dynamics. Specifically, tonic and phasic modes of activity in the reticular activating system (RAS) influence, and are influenced by, salient stimuli, respectively. The RAS influences the spectral characteristics of activity in the neocortex, shifting the balance between low- and high-frequency fluctuations. Aperiodic '1/f slope' has emerged as a promising composite measure of these brain state dynamics. However, the relationship of 1/f slope to state-dependent processes, such as saliency, is less explored, particularly intracranially in humans. Here, we record pupil diameter as a measure of brain state and intracranial local field potentials in auditory cortical regions of human patients during an auditory oddball stimulus paradigm. We find that phasic high-gamma band responses in auditory cortical regions exhibit an inverted-u shaped relationship to tonic state, as reflected in the 1/f slope. Furthermore, salient stimuli trigger state changes, as indicated by shifts in the 1/f slope. Taken together, these findings suggest that 1/f slope tracks tonic and phasic arousal state dynamics in the human brain, increasing the interpretability of this metric and supporting it as a potential biomarker in brain disorders.

Sensory representations and pupil-indexed listening effort provide complementary contributions to multi-talker speech intelligibility

Multi-talker speech intelligibility requires successful separation of the target speech from background speech. Successful speech segregation relies on bottom-up neural coding fidelity of sensory information and top-down effortful listening. Here, we studied the interaction between temporal processing measured using Envelope Following Responses (EFRs) to amplitude modulated tones, and pupil-indexed listening effort, as it related to performance on the Quick Speech-in-Noise (QuickSIN) test in normal-hearing adults. Listening effort increased at the more difficult signal-to-noise ratios, but speech intelligibility only decreased at the hardest signal-to-noise ratio. Pupil-indexed listening effort and EFRs did not independently relate to QuickSIN performance. However, the combined effects of both EFRs and listening effort explained significant variance in QuickSIN performance. Our results suggest a synergistic interaction between sensory coding and listening effort as it relates to multi-talker speech intelligibility. These findings can inform the development of next-generation multi-dimensional approaches for testing speech intelligibility deficits in listeners with normal-hearing.

Behavioral modulations can alter the visual tuning of neurons in the mouse thalamocortical pathway

Behavioral influences shape processing in the retina and the dorsal lateral geniculate nucleus (dLGN), although their precise effects on visual tuning remain debated. Using 2-photon functional Ca2+ imaging, we characterize the dynamics of dLGN axon activity in the primary visual cortex of awake behaving mice, examining the effects of visual stimulation, pupil size, stillness, locomotion, and anesthesia. In awake recordings, nasal visual motion triggers pupil dilation and, occasionally, locomotion, increasing responsiveness and leading to an overrepresentation of boutons tuned to nasal motion. These effects are pronounced during quiet wakefulness, weaker during locomotion, and absent under anesthesia. Accounting for dynamic changes in responsiveness reduces tuning biases, revealing an overall preservation of retinal representations of visual motion in the visual thalamocortical pathway. Thus, stimulus-driven behavioral modulations can alter tuning and bias classification of early visual neurons, underscoring the importance of considering such influences in sensory processing experiments.

Broadscale dampening of uncertainty adjustment in the aging brain

The ability to prioritize among input features according to relevance enables adaptive behaviors across the human lifespan. However, relevance often remains ambiguous, and such uncertainty increases demands for dynamic control. While both cognitive stability and flexibility decline during healthy ageing, it is unknown whether aging alters how uncertainty impacts perception and decision-making, and if so, via which neural mechanisms. Here, we assess uncertainty adjustment across the adult lifespan (N = 100; cross-sectional) via behavioral modeling and a theoretically informed set of EEG-, fMRI-, and pupil-based signatures. On the group level, older adults show a broad dampening of uncertainty adjustment relative to younger adults. At the individual level, older individuals whose modulation more closely resembled that of younger adults also exhibit better maintenance of cognitive control. Our results highlight neural mechanisms whose maintenance plausibly enables flexible task-set, perception, and decision computations across the adult lifespan.

Protocol for an open-source system to integrate calcium imaging, pupillometry, and locomotion-estimated tracking in head-fixed mice

A wide selection of behavioral assays in systems neuroscience relies on head-fixation protocols to integrate in vivo multi-photon imaging approaches. For this, simultaneous pupillometry and locomotion tracking in head-fixed mice are used to measure behavioral responses and identify neural correlates. Here, we present an open-source protocol for assembling a complete head-fixation system that integrates pupillometry and locomotion-estimated tracking with multi-photon calcium imaging. We include detailed procedures for head-fixation and for data collection.

Flexibility of intrinsic neural timescales during distinct behavioral states

Recent neuroimaging studies demonstrate a heterogeneity of timescales prevalent in the brain's ongoing spontaneous activity, labeled intrinsic neural timescales (INT). At the same time, neural timescales also reflect stimulus- or task-related activity. The relationship of the INT during the brain's spontaneous activity with their involvement in task states including behavior remains unclear. To address this question, we combined calcium imaging data of spontaneously behaving mice and human electroencephalography (EEG) during rest and task states with computational modeling. We obtained four primary findings: (i) the distinct behavioral states can be accurately predicted from INT, (ii) INT become longer during behavioral states compared to rest, (iii) INT change from rest to task is correlated negatively with the variability of INT during rest, (iv) neural mass modeling shows a key role of recurrent connections in mediating the rest-task change of INT. Extending current findings, our results show the dynamic nature of the brain's INT in reflecting continuous behavior through their flexible rest-task modulation possibly mediated by recurrent connections.

Midbrain encodes sound detection behavior without auditory cortex

Hearing involves analyzing the physical attributes of sounds and integrating the results of this analysis with other sensory, cognitive, and motor variables in order to guide adaptive behavior. The auditory cortex is considered crucial for the integration of acoustic and contextual information and is thought to share the resulting representations with subcortical auditory structures via its vast descending projections. By imaging cellular activity in the corticorecipient shell of the inferior colliculus of mice engaged in a sound detection task, we show that the majority of neurons encode information beyond the physical attributes of the stimulus and that the animals' behavior can be decoded from the activity of those neurons with a high degree of accuracy. Surprisingly, this was also the case in mice in which auditory cortical input to the midbrain had been removed by bilateral cortical lesions. This illustrates that subcortical auditory structures have access to a wealth of non-acoustic information and can, independently of the auditory cortex, carry much richer neural representations than previously thought.

Mesoscale functional architecture in medial posterior parietal cortex

The posterior parietal cortex (PPC) in mice has various functions including multisensory integration1-3, vision-guided behaviors4-6, working memory7-13, and posture control14,15. However, an integrated understanding of these functions and their cortical localizations in and around the PPC and higher visual areas (HVAs), has not been completely elucidated. Here we simultaneously imaged the activity of thousands of neurons within a 3 × 3 mm2 field-of-view, including eight cortical areas around the PPC, during behavior with a two-photon mesoscope16. Mice performed both a vision-guided task and a choice history-dependent task, and the imaging results revealed distinct, localized, behavior-related functions of two medial PPC areas. Neurons in the anteromedial (AM) HVA responded to both vision and choice information, and thus AM is a locus of association between these channels. By contrast, the anterior (A) HVA stores choice history with sequential dynamics and represents posture. Mesoscale correlation analysis on the intertrial variability of neuronal activity demonstrated that neurons in area A shared fluctuations with the primary somatosensory area, while neurons in AM exhibited diverse, area-dependent interactions. Pairwise interarea interactions among neurons were precisely predicted by the anatomical input correlations, with the exception of some global interactions. Thus, the medial PPC has two distinct modules, areas A and AM, which each have distinctive modes of cortical communication. These medial PPC modules can serve separate higher-order functions: area A for transmission of information including posture, movement, and working memory; and area AM for multisensory and cognitive integration with locally processed signals.

The claustrum and synchronized brain states

Cortical activity is constantly fluctuating between distinct spatiotemporal activity patterns denoted by changes in brain state. States of cortical desynchronization arise during motor generation, increased attention, and high cognitive load. Synchronized brain states comprise spatially widespread, coordinated low-frequency neural activity during rest and sleep when disengaged from the external environment or 'offline'. The claustrum is a small subcortical structure with dense reciprocal connections with the cortex suggesting modulation by, or participation in, brain state regulation. Here, we highlight recent work suggesting that neural activity in the claustrum supports cognitive processes associated with synchronized brain states characterized by increased low-frequency network activity. As an example, we outline how claustrum activity could support episodic memory consolidation during sleep.

Predicting the effect of micro-stimulation on macaque prefrontal activity based on spontaneous circuit dynamics

A crucial challenge in targeted manipulation of neural activity is to identify perturbation sites whose stimulation exerts significant effects downstream with high efficacy, a procedure currently achieved by labor-intensive and potentially harmful trial and error. Can one predict the effects of electrical stimulation on neural activity based on the circuit dynamics during spontaneous periods? Here we show that the effects of single-site micro-stimulation on ensemble activity in an alert monkey's prefrontal cortex can be predicted solely based on the ensemble's spontaneous activity. We first inferred the ensemble's causal flow based on the directed functional interactions inferred during spontaneous periods using convergent cross-mapping and showed that it uncovers a causal hierarchy between the recording electrodes. We find that causal flow inferred at rest successfully predicts the spatiotemporal effects of micro-stimulation. We validate the computational features underlying causal flow using ground truth data from recurrent neural network models, showing that it is robust to noise and common inputs. A detailed comparison between convergent-cross mapping and alternative methods based on information theory reveals the advantages of the former method in predicting perturbation effects. Our results elucidate the causal interactions within neural ensembles and will facilitate the design of intervention protocols and targeted circuit manipulations suitable for brain-machine interfaces.

A Dynamic Link between Respiration and Arousal

Viewing brain function through the lens of other physiological processes has critically added to our understanding of human cognition. Further advances though may need a closer look at the interactions between these physiological processes themselves. Here we characterize the interplay of the highly periodic, and metabolically vital respiratory process and fluctuations in arousal neuromodulation, a process classically seen as nonperiodic. In the data from three experiments (N = 56 / 27 / 25 women and men), we tested for covariations in respiratory and pupil size (arousal) dynamics. After substantiating a robust coupling in the largest dataset, we further show that coupling strength decreases during task performance compared with rest and that it mirrors a decreased respiratory rate when participants take deeper breaths. Taken together, these findings suggest a stronger link between respiratory and arousal processes than previously thought. Moreover, these links imply a stronger coupling during periods of rest, and the effect of respiratory rate on the coupling suggests a driving role. As a consequence, studying the role of neuromodulatory arousal on cortical function may also need to consider respiratory influences.

Attentional failures after sleep deprivation represent moments of cerebrospinal fluid flow

Sleep deprivation rapidly disrupts cognitive function, and in the long term contributes to neurological disease. Why sleep deprivation has such profound effects on cognition is not well understood. Here, we use simultaneous fast fMRI-EEG to test how sleep deprivation modulates cognitive, neural, and fluid dynamics in the human brain. We demonstrate that after sleep deprivation, sleep-like pulsatile cerebrospinal fluid (CSF) flow events intrude into the awake state. CSF flow is coupled to attentional function, with high flow during attentional impairment. Furthermore, CSF flow is tightly orchestrated in a series of brain-body changes including broadband neuronal shifts, pupil constriction, and altered systemic physiology, pointing to a coupled system of fluid dynamics and neuromodulatory state. The timing of these dynamics is consistent with a vascular mechanism regulated by neuromodulatory state, in which CSF begins to flow outward when attention fails, and flow reverses when attention recovers. The attentional costs of sleep deprivation may thus reflect an irrepressible need for neuronal rest periods and widespread pulsatile fluid flow.

Vagus nerve stimulation recruits the central cholinergic system to enhance perceptual learning

Perception can be refined by experience, up to certain limits. It is unclear whether perceptual limits are absolute or could be partially overcome via enhanced neuromodulation and/or plasticity. Recent studies suggest that peripheral nerve stimulation, specifically vagus nerve stimulation (VNS), can alter neural activity and augment experience-dependent plasticity, although little is known about central mechanisms recruited by VNS. Here we developed an auditory discrimination task for mice implanted with a VNS electrode. VNS applied during behavior gradually improved discrimination abilities beyond the level achieved by training alone. Two-photon imaging revealed VNS induced changes to auditory cortical responses and activated cortically projecting cholinergic axons. Anatomical and optogenetic experiments indicated that VNS can enhance task performance through activation of the central cholinergic system. These results highlight the importance of cholinergic modulation for the efficacy of VNS and may contribute to further refinement of VNS methodology for clinical conditions.

The astrocyte α1A-adrenoreceptor is a key component of the neuromodulatory system in mouse visual cortex

Noradrenaline (norepinephrine) is known to modulate many physiological functions and behaviors. In this study, we tested to what extent astrocytes, a type of glial cell, participate in noradrenergic signaling in mouse primary visual cortex (V1). Astrocytes are essential partners of neurons in the central nervous system. They are central to brain homeostasis, but also dynamically regulate neuronal activity, notably by relaying and regulating neuromodulator signaling. Indeed, astrocytes express receptors for multiple neuromodulators, including noradrenaline, but the extent to which astrocytes are involved in noradrenergic signaling remains unclear. To test whether astrocytes are involved in noradrenergic neuromodulation in mice, we employed both short hairpin RNA mediated knockdown as well as pharmacological manipulation of the major noradrenaline receptor in astrocytes, the α1A-adrenoreceptor. Using acute brain slices, we found that the astrocytic α1A-adrenoreceptor subtype contributes to the generation of large intracellular Ca2+ signals in visual cortex astrocytes, which are generally thought to underlie astrocyte function. To test if reduced α1A-adrenoreceptor signaling in astrocytes affected the function of neuronal circuits in V1, we used both patch-clamp and field potential recordings. These revealed that noradrenergic signaling through the astrocyte α1A-adrenoreceptor is important to not only modulate synaptic activity but also to regulate plasticity in V1, through the potentiation of synaptic responses in circuits involved in visual information processing.

Tonic and burst-like locus coeruleus stimulation distinctly shift network activity across the cortical hierarchy

Noradrenaline (NA) release from the locus coeruleus (LC) changes activity and connectivity in neuronal networks across the brain, modulating multiple behavioral states. NA release is mediated by both tonic and burst-like LC activity. However, it is unknown whether the functional changes in target areas depend on these firing patterns. Using optogenetics, photometry, electrophysiology and functional magnetic resonance imaging in mice, we show that tonic and burst-like LC firing patterns elicit brain responses that hinge on their distinct NA release dynamics. During moderate tonic LC activation, NA release engages regions associated with associative processing, while burst-like stimulation biases the brain toward sensory processing. These activation patterns locally couple with increased astrocytic and inhibitory activity and change the brain's topological configuration in line with the hierarchical organization of the cerebral cortex. Together, these findings reveal how the LC-NA system achieves a nuanced regulation of global circuit operations.

Measuring instability in chronic human intracortical neural recordings towards stable, long-term brain-computer interfaces

Intracortical brain-computer interfaces (iBCIs) enable people with tetraplegia to gain intuitive cursor control from movement intentions. To translate to practical use, iBCIs should provide reliable performance for extended periods of time. However, performance begins to degrade as the relationship between kinematic intention and recorded neural activity shifts compared to when the decoder was initially trained. In addition to developing decoders to better handle long-term instability, identifying when to recalibrate will also optimize performance. We propose a method, "MINDFUL", to measure instabilities in neural data for useful long-term iBCI, without needing labels of user intentions. Longitudinal data were analyzed from two BrainGate2 participants with tetraplegia as they used fixed decoders to control a computer cursor spanning 142 days and 28 days, respectively. We demonstrate a measure of instability that correlates with changes in closed-loop cursor performance solely based on the recorded neural activity (Pearson r = 0.93 and 0.72, respectively). This result suggests a strategy to infer online iBCI performance from neural data alone and to determine when recalibration should take place for practical long-term use.

Integration of distinct cortical inputs to primary and higher order inhibitory cells of the thalamus

The neocortex controls its own sensory input in part through top-down inhibitory mechanisms. Descending corticothalamic projections drive GABAergic neurons of the thalamic reticular nucleus (TRN), which govern thalamocortical cell activity via inhibition. Neurons in sensory TRN are organized into primary and higher order (HO) subpopulations, with separate intrathalamic connections and distinct genetic and functional properties. Here, we investigated top-down neocortical control over primary and HO neurons of somatosensory TRN. Projections from layer 6 of somatosensory cortex evoked stronger and more state-dependent activity in primary than in HO TRN, driven by more robust synaptic inputs and potent T-type calcium currents. However, HO TRN received additional, physiologically distinct, inputs from motor cortex and layer 5 of S1. Thus, in a departure from the canonical focused sensory layer 6 innervation characteristic of primary TRN, HO TRN integrates broadly from multiple corticothalamic systems, with unique state-dependence, extending the range of mechanisms for top-down control.

Sleep-sensitive dopamine receptor expression in male mice underlies attention deficits after a critical period of early adversity

Early life stress (ELS) yields cognitive impairments of unknown molecular and physiological origin. We found that fragmented maternal care of mice during a neonatal critical period from postnatal days P2-9 elevated dopamine receptor D2R and suppressed D4R expression, specifically within the anterior cingulate cortex (ACC) in only the male offspring. This was associated with poor performance on a two-choice visual attention task, which was acutely rescued in adulthood by local or systemic pharmacological rebalancing of D2R/D4R activity. Furthermore, ELS male mice demonstrated heightened hypothalamic orexin and persistently disrupted sleep. Given that acute sleep deprivation in normally reared male mice mimicked the ACC dopamine receptor subtype modulation and disrupted attention of ELS mice, sleep loss likely underlies cognitive deficits in ELS mice. Likewise, sleep impairment mediated the attention deficits associated with early adversity in human children, as demonstrated by path analysis on data collected with multiple questionnaires for a large child cohort. A deeper understanding of the sex-specific cognitive consequences of ELS thus has the potential to reveal therapeutic strategies for overcoming them.

Regularizing hyperparameters of interacting neural signals in the mouse cortex reflect states of arousal

In natural behaviors, multiple neural signals simultaneously drive activation across overlapping brain networks. Due to limitations in the amount of data that can be acquired in common experimental designs, the determination of these interactions is commonly inferred via modeling approaches, which reduce overfitting by finding appropriate regularizing hyperparameters. However, it is unclear whether these hyperparameters can also be related to any aspect of the underlying biological phenomena and help interpret them. We applied a state-of-the-art regularization procedure-automatic locality determination-to interacting neural activations in the mouse posterior cortex associated with movements of the body and eyes. As expected, regularization significantly improved the determination and interpretability of the response interactions. However, regularizing hyperparameters also changed considerably, and seemingly unpredictably, from animal to animal. We found that these variations were not random; rather, they correlated with the variability in visually evoked responses and with the variability in the state of arousal of the animals measured by pupillometry-both pieces of information that were not included in the modeling framework. These observations could be generalized to another commonly used-but potentially less informative-regularization method, ridge regression. Our findings demonstrate that optimal model hyperparameters can be discovery tools that are informative of factors not a priori included in the model's design.

Toward a computational role for locus coeruleus/norepinephrine arousal systems

Brain and behavior undergo measurable changes in their underlying state and neuromodulators are thought to contribute to these fluctuations. Why do we undergo such changes, and what function could the underlying neuromodulatory systems perform? Here we examine theoretical answers to these questions with respect to the locus coeruleus/norepinephrine system focusing on peripheral markers for arousal, such as pupil diameter, that are thought to provide a window into brain wide noradrenergic signaling. We explore a computational role for arousal systems in facilitating internal state transitions that facilitate credit assignment and promote accurate perceptions in non-stationary environments. We summarize recent work that supports this idea and highlight open questions as well as alternative views of how arousal affects cognition.