Biologically-induced precipitation of sphalerite-wurtzite nanoparticles by sulfate-reducing bacteria: implications for acid mine drainage treatment

Fate and transport of dissolved/colloidal metals in an aging passive treatment system for coal mine drainage: Divergent behavior of trace metals and iron

Passive treatment systems are widely used to mitigate the low pH and high concentration of Fe (and often Al) that are found in abandoned mine drainage (AMD), but few studies have focused on understanding how Fe and Al removal - and the possible concurrent formation of colloids - affects the fate of trace metals in these systems. We measured trace metals at multiple locations across a 17-year-old passive treatment system in the middle western anthracite field of Pennsylvania, USA, to understand their partitioning between the dissolved and colloidal fractions and the extent to which the behavior of the major metal species controls the fate of the trace metals. The treatment system, consisting of an oxidation pond followed by three vertical flow wetlands, removes more than 90 % of the Fe, while the trace metals Co, Ni, and Zn remain at more than 70 % of their influent concentrations. Under the oxic conditions of surface water at the spillways between ponds, ferric oxyhydroxide precipitates form, which settle rapidly and do not create mobile colloids. The trace metal concentrations remain high under these conditions as the low pH (< 4) inhibits adsorption to the precipitates. Standpipes discharging anoxic water from the underdrains for each upstream vertical flow wetland exhibit higher pH, leading to the precipitation of Al hydroxysulfates and the formation of colloids. The total (dissolved + colloidal) concentrations of Co and Ni correlate well with Al concentrations, suggesting adsorption or co-precipitation with the Al precipitates. Total Zn concentration is not well correlated with Al, and the colloidal fraction is significant in some, but not all standpipe samples, suggesting that Zn is forming a separate precipitate phase, likely ZnS. Overall, the ability of an aging treatment system to increase pH - not its Fe removal efficiency - is a predictor of the mobility of dissolved trace metals. However, the behavior of each metal varies substantially along different flow paths within the system.

Sulfate-reducing bacteria unearthed: ecological functions of the diverse prokaryotic group in terrestrial environments

Sulfate-reducing prokaryotes (SRPs) are essential microorganisms that play crucial roles in various ecological processes. Even though SRPs have been studied for over a century, there are still gaps in our understanding of their biology. In the past two decades, a significant amount of data on SRP ecology has been accumulated. This review aims to consolidate that information, focusing on SRPs in soils, their relation to the rare biosphere, uncultured sulfate reducers, and their interactions with other organisms in terrestrial ecosystems. SRPs in soils form part of the rare biosphere and contribute to various processes as a low-density population. The data reveal a diverse range of sulfate-reducing taxa intricately involved in terrestrial carbon and sulfur cycles. While some taxa like Desulfitobacterium and Desulfosporosinus are well studied, others are more enigmatic. For example, members of the Acidobacteriota phylum appear to hold significant importance for the terrestrial sulfur cycle. Many aspects of SRP ecology remain mysterious, including sulfate reduction in different bacterial phyla, interactions with bacteria and fungi in soils, and the existence of soil sulfate-reducing archaea. Utilizing metagenomic, metatranscriptomic, and culture-dependent approaches will help uncover the diversity, functional potential, and adaptations of SRPs in the global environment.

Use of propionic acid additions to enhance zinc removal from mine drainage in short residence time, flow-through sulfate-reducing bioreactors

The effectiveness of liquid carbon additions to enhance zinc removal in laboratory-scale short hydraulic residence time (19 h) compost bioreactors receiving synthetic mine water with a high influent zinc concentration (45 mg/L) was investigated. Effective removal of such elevated zinc concentrations could not be sustained by sulfate reduction and/or other attenuation processes without carbon supplementation. Propionic acid addition resulted in improved and sustained performance by promoting the activities of sulfate reducing bacteria, leading to efficient zinc removal (mean 99%) via bacterial sulfate reduction. In contrast, cessation of propionic acid addition led to carbon limitation and the growth of sulfur oxidising bacteria, compromising zinc removal by bacterial sulfate reduction. These research findings demonstrate the potential for modest liquid carbon additions to compost-based passive treatment systems to engineer microbial responses which enhance rates of zinc attenuation in a short hydraulic residence time, enabling remediation of highly polluting mine drainage at sites with limited land availability.

Algae, biochar and bacteria for acid mine drainage (AMD) remediation: A review

Acid mine drainage (AMD) is a global issue and causes harmful environmental impacts. AMD has high acidity and contains a high concentration of heavy metals and metalloids, making it toxic to plants, animals, and humans. Traditional treatments for AMD have been widely used for a long time. Nevertheless, some limitations, such as low efficacy and secondary contamination, have led them to be replaced by other methods such as bio-based AMD treatments. This study reviewed three bio-based treatment methods using algae, biochar, and bacteria that can be used separately and potentially in combination for effective and sustainable AMD treatment to identify the removal mechanisms and essential parameters affecting AMD treatment. All bio-based methods, when applied as a single process and in combination (e.g. algae-biochar and algae-bacteria), were identified as effective treatments for AMD. Also, all these bio-based methods were found to be affected by some parameters (e.g. pH, temperature, biomass concentration and initial metal concentration) when removing heavy metals from AMD. However, we did not identify any research focusing on the combination of algae-biochar-bacteria as a consortium for AMD treatment. Therefore, due to the excellent performance in AMD treatment of algae, biochar and bacteria and the potential synergism among them, this review provides new insight and discusses the feasibility of a combination of algae-biochar-bacteria for AMD treatment.

Nickel Isotope Fractionation As an Indicator of Ni Sulfide Precipitation Associated with Microbially Mediated Sulfate Reduction

Microbially mediated sulfate reduction is a promising cost-effective and sustainable process utilized in permeable reactive barriers (PRB) and constructed wetlands to treat mine wastewater. Laboratory batch experiments were performed to evaluate nickel (Ni) isotope fractionation associated with precipitation of Ni-sulfides in the presence of the sulfate-reducing bacterium (SRB) Desulfovibrio desulfuricans^T (DSM-642). Precipitates were collected anaerobically and characterized by synchrotron powder X-ray diffraction (PXRD), scanning electron microscopy combined with energy-dispersive X-ray spectroscopy (SEM-EDS), and transmission electron microscopy (TEM). Solid-phase analyses showed that the precipitates associated with bacteria attached to the serum bottle walls were characterized by enhanced size and crystallinity. Lighter Ni isotopes were preferentially concentrated in the solid phase, whereas the solution was enriched in heavier Ni isotopes compared to the input solution. This fractionation pattern was consistent with closed-system equilibrium isotope fractionation, yielding a fractionation factor of Δ⁶⁰Ni_solid-aq = -1.99‰. The Ni isotope fractionation measured in this study indicates multiple Ni reaction mechanisms occurring in the complex SRB-Ni system. The results from this study offer insights into Ni isotope fractionation during interaction with SRB and provide a foundation for the characterization and development of Ni stable isotopes as tracers in environmental applications.

Ultrafine multi-metal (Zn, Cd, Pb) sulfide aggregates formation in periodically water-logged organic soil

This study investigates authigenic metal (Zn, Cd, and Pb) sulfides formed in the upper (4-20 cm) layer of severely degraded soil close to ZnPb smelter in CE Europe (southern Poland). The soil layer is circumneutral (pH 6.0-6.8), organic, occasionally water-logged, and contains on average 26,400 mg kg^-1 Zn, 18,800 mg kg^-1 Pb, 1300 mg kg^-1 Cd, and 2500 mg kg^-1 of sulfur. The distribution of the authigenic sulfide mineralization is uneven, showing close association with the remains of vascular plants (Equisetaceae, Carex, and herbs). A combination of focused ion beam (FIB) technology with scanning (SEM) and transmission electron microscopy (TEM) is used to reveal the structure and organization of the metal sulfides at micro- and nanoscale resolution. The sulfides form spheroidal and botryoidal porous aggregates composed of nanocrystalline (<5 nm) ZnCd sulfide solid solution and minor discrete PbS (galena) crystals up to 15 nm. The solid solution exists in a cubic (sphalerite) polytype over a whole Zn/Cd range. An intricate core-shell structure is found to be a characteristic feature of the aggregates in which high-Zn outer layers encapsulate Cd-rich sulfide core. PbS resides between the Cd-rich and Cd poor sulfide within nano sites of increased porosity. The study highlights the importance of nanoscale analyses for the prediction of metal behavior in soils. The sulfide self-organization into complex structures and Cd encapsulation inside high-Zn sulfide indicate the occurrence of a self-sustainable mechanism specific to polluted periodically water-logged soil that limits Cd mobility. However, as the reduced Cd mobility is obtained at the Zn expense, the soil gets Cd enriched relative to Zn over extended periods. Although the study proves PbS crystallization in the soil, the process seems environmentally irrelevant even at high Pb contents, being suppressed by other soil processes (e.g., Pb sorption on organic matter). Our findings are valuable in remediation strategies and the management of contaminated soils rich in organic matter that address the mobility of toxic metals and their transfer into living organisms.

Tuning the Redox Chemistry of Copper Oxide Nanoarchitectures Integrated with rGOP via Facet Engineering: Sensing H2S toward SRB Detection

The ultrasensitive determination of sulfate reducing bacteria (SRB) is of great significance for their crucial roles in environmental and industrial harms together with the early detection of microbial corrosion. In this work, we report the development of highly efficient electrocatalysts, i.e., Cu₂O-CuO extended hexapods (EHPs), which are wrapped on homemade freestanding graphene paper to construct a flexible paper electrode in the electrochemical sensing of the biomarker sulfide for SRB detection. Herein Cu₂O-CuO EHPs have been synthesized via a highly controllable and facile approach at room temperature, where the redox centers of copper oxide nanoarchitectures are tuned via facet engineering, and then they are deposited on the graphene paper surface through an electrostatic adsorption to enable homogeneous and highly dense distribution. Owing to the synergistic contribution of high electrocatalytic activity from the Cu mixed oxidation states and abundant catalytically active facets of Cu₂O-CuO EHPs and high electrical conductivity of the graphene paper electrode substrate, the resultant nanohybrid paper electrode has exhibited superb electrochemical sensing properties for H₂S with a wide linear range up to 352 μM and an extremely low detection limit (LOD) of 0.1 nM with a signal-to-noise ratio of 3 (S/N = 3), as well as high sensitivity, stability, and selectivity. Furthermore, taking advantage of the good biocompatibility and mechanical flexibility, the electrochemical sensing platform based on the proposed electrode has been applied in the sensitive detection of SRB in environmental samples through the sensing of sulfide from SRB, which holds great promise for on-site and online corrosion and environmental monitoring.

Cadmium-tolerant bacteria: current trends and applications in agriculture

Cadmium (Cd) is considered a toxic heavy metal; nevertheless, its toxicity fluctuates for different organisms. Cadmium-tolerant bacteria (CdtB) are diverse and non-phylogenetically related. Because of their ecological importance these bacteria become particularly relevant when pollution occurs and where human health is impacted. The aim of this review is to show the significance, culturable diversity, metabolic detoxification mechanisms of CdtB and their current uses in several bioremediation processes applied to agricultural soils. Further discussion addressed the technological devices and the possible advantages of genetically modified CdtB for diagnostic purposes in the future.

Microbial Diversity of Bacteria Involved in Biomineralization Processes in Mine-Impacted Freshwaters

In order to increase the knowledge about geo-bio interactions in extreme metal-polluted mine waters, we combined microbiological, mineralogical, and geochemical analyses to study the indigenous sulfate-reducing bacteria (SRB) involved in the heavy metal (HM) biomineralization processes occurring in Iglesiente and Arburese districts (SW Sardinia, Italy). Anaerobic cultures from sediments of two different mining-affected streams of this regional framework were enriched and analyzed by 16S rRNA next-generation sequencing (NGS) technique, showing sequences closely related to SRB classified in taxa typical of environments with high concentrations of metals (Desulfovibrionaceae, Desulfosporosinus). Nevertheless, the most abundant genera found in our samples did not belong to the traditional SRB groups (i.e., Rahnella, Acinetobacter). The bio-precipitation process mediated by these selected cultures was assessed by anaerobic batch tests performed with polluted river water showing a dramatic (more than 97%) Zn decrease. Scanning electron microscopy (SEM) analysis revealed the occurrence of Zn sulfide with tubular morphology, suggesting a bacteria-mediated bio-precipitation. The inocula represent two distinct communities of microorganisms, each adapted to peculiar environmental conditions. However, both the communities were able to use pollutants in their metabolism and tolerating HMs by detoxification mechanisms. The Zn precipitation mediated by the different enriched cultures suggests that SRB inocula selected in this study have great potentialities for the development of biotechnological techniques to reduce contaminant dispersion and for metal recovery.

Remediation of soil cadmium pollution by biomineralization using microbial-induced precipitation: a review

In recent years, with industrial pollution and the application of agricultural fertilizers with high cadmium (Cd) content, soil Cd pollution has become increasingly serious. A large amount of Cd is discharged into the environment, greatly endangering the stability of the ecological environment and human health. The use of microorganisms to induce Cd precipitation and mineralization is an important bioremediation method. Itis highly efficient, has a low cost, enables environmental protection, and convenient to operate. This article summarizes the pollution status, pollution source, biological toxicity and existing forms of Cd, as well as the biomineralization mechanism of microbial induced Cd(II) precipitation, mainly including microbial-induced carbonate precipitation, microbial-induced phosphate precipitation and microbial-induced sulfide precipitation. Factors affecting the bioremediation of Cd, such as pH, coexisting ions, and temperature, are introduced. Finally, the key points and difficulties of future microbe-induced Cd(II) biomineralization research are highlighted, providing a scientific basis and theoretical guidance for the application of microbe-induced Cd(II) immobilization in soil.

Biostimulation of sulfate-reducing bacteria used for treatment of hydrometallurgical waste by secondary metabolites of urea decomposition by Ochrobactrum sp. POC9: From genome to microbiome analysis

Sulfate-reducing bacteria (SRB) are key players in many passive and active systems dedicated to the treatment of hydrometallurgical leachates. One of the main factors reducing the efficiency and activity of SRB is the low pH and poor nutrients in leachates. We propose an innovative solution utilizing biogenic ammonia (B-NH₃), produced by urea degrading bacteria, as a pretreatment agent for increasing the pH of the leachate and spontaneously stimulating SRB activity via bacterial secondary metabolites. The selected strain, Ochrobactrum sp. POC9, generated 984.7 mg/L of ammonia in 24 h and promotes an effective neutralization of B-NH₃. The inferred metabolic traits indicated that the Ochrobactrum sp. POC9 can synthesize a group of vitamins B, and the production of various organic metabolites was confirmed by GC-MS analysis. These metabolites comprise alcohols, organic acids, and unsaturated hydrocarbons that may stimulate biological sulfate reduction. With the pretreatment of B-NH₃, sulfate removal efficiency reached ~92.3% after 14 days of incubation, whereas SRB cell count and abundance were boosted (~10⁷ cell counts and 88 OTUs of SRB) compared to synthetic ammonia (S-NH₃) (~10³ cell counts and 40 OTUs of SRB). The dominant SRB is Desulfovibrio in both S-NH₃ and B-NH₃ pretreated leachate, however, it belonged to two different clades. By reconstructing the ecological network, we found that B-NH₃ not only directly increases SRB performance but also promotes other strains with positive correlations with SRB.

Turning the Page: Advancing Detection Platforms for Sulfate Reducing Bacteria and their Perks

Sulfate reducing bacteria (SRB) are blamed as main culprits in triggering huge corrosion damages by microbiologically influenced corrosion. They obtained their energy through enzymatic conversion of sulfates to sulfides which are highly corrosive. However, conventional SRB detection methods are complex, time-consuming and are not enough sensitive for reliable detection. The advanced biosensing technologies capable of overcoming the aforementioned drawbacks are in demand. So, nanomaterials being economical, environmental friendly and showing good electrocatalytic properties are promising candidates for electrochemical detection of SRB as compared with antibody based assays. Here, we summarize the recent advances in the detection of SRB using different techniques such as PCR, UV visible method, fluorometric method, immunosensors, electrochemical sensors and photoelectrochemical sensors. We also discuss the SRB detection based on determination of sulfide, typical metabolic product of SRB.

Functional CdS nanocomposites recovered from biomineralization treatment of sulfate wastewater and its applications in the perspective of photocatalysis and electrochemistry

The sulfur ions generated during the microbial treatment of sulfate wastewater could cause secondary pollution problem, however, the application of the biomineralization technique could convert sulfur ions into sulfide nanocomposites with diverse properties. This study constructed a multi-stage process for sulfate wastewater treatment and CdS nanocomposites (CdS-NCs) recovery by using biomineralization, which simultaneously achieved the removal of pollutants and recovery of functional nanocomposites. In this process, about 97% of the sulfate could be removed, and the CdS-NCs with a diameter of 16.0-20.2 nm were collected at different pHs. The results of FTIR and Raman proved that the biomacromolecules derived from microorganisms participated in the formation of CdS-NCs. The Mott-Schottky curve suggested that the CdS-NCs belonged to n-type semiconductors with the energy gap of 2.29-2.38 eV and could be applied as the photocatalyst, and up to 78.2% of 200 mg/L tetracycline was photodegraded catalytically by CdS-NCs obtained at pH 6.5. In the application of CdS-NCs as anodes of lithium-ion batteries, all the batteries assembled by CdS-NCs exhibited a very strong cycle performance of more than 500 cycles. This research not only effectively recovered nanocomposites with great application potential from sulfate wastewater but also provided a perspective for the utilization of recovered resources.

Sulfate and metals removal from acid mine drainage in a horizontal anaerobic immobilized biomass (HAIB) reactor

The acid mine drainage (AMD) can causes negative impacts to the environment. Physico-chemical methods to treat AMD can have high operational costs. Through passive biological methods, such as anaerobic reactors, sulfate reduction, and recovery of metals are promoted. This study evaluated the performance of a horizontal anaerobic immobilized biomass (HAIB) reactor for the treatment of synthetic AMD using polyurethane foam as support material, and anaerobic sludge as inoculum. Ethanol was used as an electron donor for sulfate reduction, resulting in an influent chemical oxygen demand (COD) in the range of 500-1,500 mg/L and COD/sulfate ratio at 1. A gradual increase of sulfate and COD concentration was applied that resulted in COD removal efficiencies higher than 78%, and sulfate removal efficiencies of 80%. Higher sulfate and COD concentrations associated with higher hydraulic retention times (36 h) proved to be a better strategy for sulfate removal. The HAIB reactor was able to accommodate an increase in the SLR up to 2.25 g SO₄^2-/L d^-1 which achieved the greatest performance on the entire process. Moreover, the reactor proved a suitable alternative for reaching high levels of metal removal (86.95 for Zn, 98.79% for Fe, and 99.59% for Cu).

Electron Microscopy Evidence of Zn Bioauthigenic Sulfides Formation in Polluted Organic Matter-Rich Sediments from the Chicamocha River (Boyacá-Colombia)

Electron microscopy and sediment geochemical data from a river basin (the upper Chicamocha river basin, UCRB, Boyacá province, Colombia) affected by anthropogenic activities (wastewater discharges, smelting and agricultural activities) showed the existence of heterogeneously distributed Zn particles in the sediments and sediments with Zn contents above the regional background (42 mg/kg). The objective of this study was to evidence the ZnS sedimentary neoformation in organic matter rich sediments deposited in anthropogenic reservoirs to reveal the processes involved in the sedimentary uptake of Zn from potential pollution sources. The highest Zn concentrations are found in clay minerals and organic matter-rich sediments (up to 427 mg/kg) deposited in slow-flowing reaches of the river associated to La Playa dam. Quartz-rich sediments poor in organic matter deposited in fast flowing segments of the river show very low Zn contents (1–12 mg/kg). Electron microscopy images showed ZnS nanoparticles forming cell-shaped aggregates suggesting that sulfate-reducing microorganisms acted as templates for the partial binding of Zn and for the nucleation and growth of zinc sulfide minerals. A good correlation of Zn with total organic carbon (r = 0.936) and the low potential redox of these sediments (−233 mV) suggest that organic matter was able to maintain oxygen depleted conditions appropriate to the Zn accumulation in the sediments. Our results demonstrate that potentially toxic Zn, originating from anthropic activities, was partially immobilized in organic matter-rich sediments through the precipitation of sulfides.

Characterization and application of an anaerobic, iron and sulfate reducing bacterial culture in enhanced bioremediation of acid mine drainage impacted soil

Development of an appropriate bioremediation strategy for acid mine drainage (AMD) impacted environment is imperative for sustainable mining but remained critically challenged due to the paucity of knowledge on desired microbiological factors and their nutrient requirements. The present study was conducted to utilize the potential of an anaerobic, acid-tolerant, Fe³⁺ and SO₄^2- reducing microbial consortium for in situ remediation of highly acidic (pH 3.21), SO₄^2- rich (6285 mg/L) mine drainage impacted soil (AIS). A microbial consortium enriched from AMD system and composed of Clostridiales and Bacillales members was characterized and tested for in situ application through microcosms. A combination of bioaugmentation (enriched consortium) and biostimulation (cellulose) allowed 97% reduction in dissolved sulfate and rise in pH up to 7.5. 16S rRNA gene-based amplicon sequencing confirmed that although the bioaugmented community could survive in AIS, availability of carbon source was necessary for superior iron- and sulfate- reduction. Quantitative PCR of dsrB gene confirmed the role of carbon source in boosting the SO₄^2- reduction activities of sulfate reducers. This study demonstrated that native AIS harbored limited catabolic activities required for the remediation but addition of catabolically active microbial populations along with necessary carbon and energy source facilitate the bioremediation of AIS.

Biological removal of iron and sulfate from synthetic wastewater of cotton delinting factory by using halophilic sulfate-reducing bacteria

Industrial and agricultural wastewater treatment, which has the potential to cause serious risks to human health and the environment, has special importance at the lowest cost and highest efficiency such as biological processes to treat wastewater. The purpose of the study was removing iron and sulfate from very saline synthetic wastewater by means of halophilic sulfate-reducing bacteria. This process was performed under anaerobic conditions to change wastewater to a chemical fertilizer to use in saline and alkaline soils. Three halophilic SRBs were isolated and purified from wastewater of the cotton delinting factory by Postage C medium which supplemented with sodium chloride and magnesium chloride hexahydrate. The highest NaCl tolerance strain (HSR973) was allocated to Desulfovibrio halophilus sp. This experimental study was conducted in a fluid bed reactor at anaerobic conditions. Diluted concentrations of cotton linters wastewater containing 50–400 ppm iron were added to the reactor. After the bacteria fixation to different iron concentrations, the maximum removal efficiency of iron and sulfate was achieved 85.3 % and 78.4 % at the optimum retention time of 24-hours respectively. Sulfate concentration in samples decreased to about 20 % of initial concentration after 24-h retention time. The highest production of H₂S at optimum operational conditions was about 228 ml l⁻¹. The reduction of sulfate and iron biological precipitation by anaerobic rector presented high performance. This removing accompanied with the alkalinity increase during the process which could be improved condition for acidic wastewater treatment. The produced iron sulfide sludge was not suitable for use as a chemical fertilizer due to its lack of complete separation. However, the total sludge produced was able to be consumed in saline and alkaline soils for various purposes after additional treatment.

Anaerobic reduction of europium by a Clostridium strain as a strategy for rare earth biorecovery

The biorecovery of europium (Eu) from primary (mineral deposits) and secondary (mining wastes) resources is of interest due to its remarkable luminescence properties, important for modern technological applications. In this study, we explored the tolerance levels, reduction and intracellular bioaccumulation of Eu by a site-specific bacterium, Clostridium sp. 2611 isolated from Phalaborwa carbonatite complex. Clostridium sp. 2611 was able to grow in minimal medium containing 0.5 mM Eu³⁺. SEM-EDX analysis confirmed an association between Eu precipitates and the bacterium, while TEM-EDX analysis indicated intracellular accumulation of Eu. According to the HR-XPS analysis, the bacterium was able to reduce Eu³⁺ to Eu²⁺ under growth and non-growth conditions. Preliminary protein characterization seems to indicate that a cytoplasmic pyruvate oxidoreductase is responsible for Eu bioreduction. These findings suggest the bioreduction of Eu³⁺ by Clostridium sp. as a resistance mechanism, can be exploited for the biorecovery of this metal.

An efficient, cost-effective method for determining the growth rate of sulfate-reducing bacteria using spectrophotometry

The use of sulfate reducing bacteria (SRBs) in laboratory studies is a common approach for investigating microbially influenced corrosion (MIC). The characteristic formation of black iron sulfide precipitates during SRB growth, however, preclude the use of traditional spectrophotometric approaches for capturing growth data instead necessitating labour-intensive or technically specialized approaches. As such, an understanding of SRB growth responses to experimental conditions is often missing from MIC studies. Bernardez and de Andrade Lima (2015) have outlined a spectrophotometric approach for estimating SRB cell mass via the addition of HCl. This method has potential for the study SRB growth however its applicability is currently limited by the use of large aliquot volumes (45 mL), which restrict the number of timepoints that can sampled from one culture, and the extensive time devoted to cell preparation prior to OD readings.

•

We demonstrate an improved method for capturing SRB growth data via spectrophotometry following acidification. We incorporate lower sample volumes and adapt the method described in Bernardez and de Andrade Lima (2015) to a high throughput microtiter plate approach that increases the efficiency of this method and its applicability to growth rate studies.

•

Our results allay theoretical concerns that acidification may distort growth rate analysis by impacting cells differently depending on their metabolic state.

•

We further demonstrate that this method (acid-amended OD measurements) is more accurate and far more cost efficient than traditional methods (dilution spread-plate counting) and popular molecular methods (quantitative PCR) currently in use in SRB growth research.

Interactions between marmatite and bornite during the oxidative dissolution process in abiotic and biotic systems

Marmatite and bornite are commonly associated together in nature, and their interactions in an acidic environment are vital for both (bio)hydrometallurgy and acid mine drainage (AMD) production. In this work, dissolution experiments (marmatite : bornite = 2 : 0, 3 : 1, 1 : 1, 1 : 3 and 0 : 2) accompanied by analytic techniques such as electrochemical methods, Raman spectroscopy and synchrotron radiation-XRD (SR-XRD) were utilized to interpret the interactions between marmatite and bornite in acidic abiotic and biotic systems. The dissolution experiments showed that marmatite can significantly accelerate the oxidative dissolution of bornite, especially in the abiotic system. On the contrary, bornite inhibited the oxidative dissolution of marmatite when the percentage of bornite was high. Electrochemical measurements proved that the galvanic interactions between marmatite and bornite were slight and should not be the main cause for the interactions. Combined with the dissolution experiments, analytic techniques and previous references, it could be speculated that marmatite accelerated bornite dissolution mainly by providing an iron source, which acted as the energy source for microorganisms and oxidants. Bornite affected the dissolution of marmatite mainly by Cu2+ ions dissolving from bornite. Bornite inhibited the oxidative dissolution of marmatite mainly because a high Cu2+ concentration could significantly hinder marmatite dissolution. In addition, the formation of elemental sulfur or jarosite was also one important cause. Bornite intensified marmatite dissolution when the percentage of bornite or the Cu2+ concentration was extremely low and then, a synergic dissolution process occurred.

The role of cupric ions in the oxidative dissolution process of marmatite: A dependence on Cu2+ concentration

Cupric ions (Cu²⁺) play an important role in the oxidative dissolution process of marmatite in an acidic environment. In this work, dissolution experiments and numerous analytical techniques were utilized to investigate the role of Cu²⁺ in the oxidative dissolution process of marmatite in sulfuric acid. The dissolution experiments showed that the role of Cu²⁺ is significantly dependent on its concentration. A low Cu²⁺ concentration (0.25-750 mg/L) can significantly accelerate marmatite dissolution, and a relatively high Cu²⁺ concentration (above 1000 mg/L) can hinder marmatite dissolution. Element analysis, synchrotron radiation-based X-ray diffraction (SR-XRD) and Raman spectra of the leaching residues proved that no copper containing mineralogical phase was produced by the reactions between Cu²⁺ and marmatite. The X-ray photoelectron spectroscopy (XPS) analysis indicated that Cu²⁺ was first adsorbed on the marmatite surface and then produced Cu-S surface species. An electrochemical measurement further indicated that the adsorption of Cu²⁺ can remarkably enhance the electrochemical reactivity of the marmatite surface, thus catalyzing the oxidative dissolution process. However, a high percentage of Cu²⁺ adsorption on the marmatite surface can produce a passivation layer when the Cu²⁺ concentration is high in the solution, which decreases the electrochemical reactivity, thus resulting in the hinderance of the oxidative dissolution process of marmatite.

Comprehensive review on wastewater discharged from the coal-related industries - characteristics and treatment strategies

Wastewaters discharged from various coal-related activities deteriorate fresh water quality and inflict possibilities of groundwater contamination. Their characteristics mostly depend on the parent coal properties, though some of the pollutants are cyanide, thiocyanate, ammonia, phenol, heavy metals and suspended solids. This paper has reviewed the treatment techniques along with the characteristics of all such kinds of wastewater and also identified the challenges and future perspectives. Primarily, demineralization of coal can attenuate and control release of pollutants in wastewaters if implemented successfully. Mine water from non-lignite mines can be purified using simple techniques, for its reutilization. Acidic mine water and leachates can be treated using passive bioreactors with microbial activity, different organic substrates and limestone drains. Additionally bio-electrochemical systems, membranes, macrocapsules, zeolite filters, ores, physical barriers, and aquatic plants can also be used at various stages. Coal washery wastewater can be treated using natural coagulants obtained from plant extracts along with conventional coagulants. Nitrification and denitrification bacteria fixed in reactors along with activated carbon and zero-valent iron can treat coke oven wastewater. Some other sophisticated techniques are vacuum distillation, super critical oxidation, nanofiltration and reverse osmosis. Practical use of these methods, wisely in an integrated way, can reduce freshwater consumption.

Interaction of natural organic matter with acid mine drainage: In-situ accumulation of elements

Natural organic matter (NOM) within the dispersion train of Novo-Ursk tailings (Salair Ridge, Kemerovo region, Russia) is composed of remnant sedge peat mounds and is located either on the surface or is buried under cyanide wastes. The organic material interacts with AMD and with the wastes, which leaves imprint on its composition. This interaction produces geochemical anomalies (g/t: 1582 Cu, 41,300 Zn, 6060 Se, 11,700 Hg, 114-155 Au, 534 Ag, 416 I). The contents of elements depend on Fe in three groups of NOM samples that contain <10 wt% Fe (group I), 10-22 wt% Fe (group II), and >22 wt% Fe (group III). NOM with higher Fe enrichment contains less Cu, Zn, Se, Hg, Ag and I, as well as Cd, Ba, Sr and Rb, Y, Zr, Nb, Mo, Sn, Sb, and Te but more As. Yet, gold may reach high concentrations in NOM with any Fe contents. Accumulation of elements by NOM during its prolonged interaction with wastes and AMD is maintained by physical, chemical, biochemical, and mineralogical processes. They are, respectively, migration of waters controlled by permeability of material in the dispersion train depending on its grain sizes and by AMD flow direction; oxidative dissolution of sulfides, complexing, and adsorption on organic matter and Fe(III) hydroxides; microbial mediation; and secondary mineralization. The chemistry of waters interacting with NOM at the time of its deposition can be reconstructed with regard to several factors, including microbial mediation. Namely, local geochemical anomalies with ultrahigh element concentrations may arise because microorganisms can immobilize Hg to make it less toxic; sulfate-reducing bacteria can maintain precipitation of Zn, Cu, and Cd sulfides; microbial activity can mediate redistribution of elements between clastic and organic materials, etc. The inferred inheritance of AMD geochemical signatures by NOM has implications for the conditions and mechanisms of element accumulation.

Stable isotope insights into the weathering processes of a phosphogypsum disposal area

Highly acidic phosphogypsum wastes with elevated potential for contaminant leaching are stack-piled near coastal areas worldwide, threatening the adjacent environment. Huge phosphogypsum stacks were disposed directly on the marshes of the Estuary of Huelva (SW Spain) without any impermeable barrier to prevent leaching and thus, contributing to the total contamination of the estuarine environment. According to the previous weathering model, the process water ponded on the surface of the stack, initially used to carry the waste, was thought to be the main washing agent through its infiltration and subsequently the main component of the leachates emerging as the edge outflows. Preliminary restorations have been applied to the site and similar ones are planned for the future considering process water as the only pollution agent. Further investigation to validate the pollution pathway was necessary, thus an evaluation of the relationship between leachates and weathering agents of the stack was carried out using stable isotopes (δ¹⁸O, δ²H, and δ³⁴S) as geochemical tracers. Quantification of the contribution of all possible end-members to the phosphogypsum leachates was also conducted using ternary mixing via the stable isotopic tracers. The results ruled out ponded process water as main vector of edge outflow pollution and unveiled a continuous infiltration of estuarine waters to the stack implying that is subjected to an open weathering system. The isotopic tracers revealed a progressive contribution downstream from fluvial to marine signatures in the composition of the edge outflows, depending on the location of each disposal zone within the different estuarine morphodynamic domains. Thus, the current study suggests that the access of intertidal water inside the phosphogypsum stack, for instance through secondary tidal channels, is the main responsible for the weathering of the waste in depth, underlying the necessity for new, more effective restorations plans.

Effects of seawater mixing on the mobility of trace elements in acid phosphogypsum leachates

This research reports the effects of pH increase on contaminant mobility in phosphogypsum leachates by seawater mixing, as occurs with dumpings on marine environments. Acid leachates from a phosphogypsum stack located in the Estuary of Huelva (Spain) were mixed with seawater to achieve gradually pH7. Concentrations of Al, Fe, Cr, Pb and U in mixed solutions significantly decreased with increasing pH by sorption and/or precipitation processes. Nevertheless, this study provides insight into the high contribution of the phosphogypsum stack to the release of other toxic elements (Co, Ni, Cu, Zn, As, Cd and Sb) to the coastal areas, as 80-100% of their initial concentrations behaved conservatively in mixing solutions with no participation in sorption processes. Stable isotopes ruled out connexion between different phosphogypsum-related wastewaters and unveiled possible weathering inputs of estuarine waters to the stack. The urgency of adopting effective restoration measures in the study area is also stressed.

Redistribution of elements between wastes and organic-bearing material in the dispersion train of gold-bearing sulfide tailings: Part I. Geochemistry and mineralogy

Migration and redistribution of elements during prolonged interaction of cyanide wastes with the underlying natural organic-bearing material have been studied in two ~40cm deep cores that sample primary ores and their weathering profile (wastes I and II, respectively) in the dispersion train of gold-bearing sulfide tailings in Siberia. Analytical results of SR-XRF, whole-rock XRF, AAS, CHNS, and SEM measurements of core samples show high K, Sr, Ti, and Fe enrichments and correlation of P₂O₅ and Mn with LOI and C_org. Organic material interlayered or mixed with the wastes accumulates Cu, Zn, Se, Cd, Ag, Au, and Hg. The peat that contacts wastes II bears up to 3wt.% Zn, 1000g/t Se, 100g/t Cd, and 8000g/t Hg. New phases of Zn and Hg sulfides and Hg selenides occur as abundant sheaths over bacterial cells suggesting microbial mediation in sorption of elements. Organic-bearing material in the cores contains 10-30g/t Au in 2-5cm thick intervals, both within and outside the intervals rich in sulfides and selenides. Most of gold is invisible but reaches 345g/t and forms 50nm to 1.5μm Au⁰ particles in a thin 2-3cm interval of organic remnants mixed with wastes I. Vertical and lateral infiltration of AMD waters in peat and oxidative dissolution of wastes within the dispersion train of the Ursk tailings lead to redistribution of elements and their accumulation by combined physical (material's permeability, direction AMD), chemical (complexing, sorption by organic matter and Fe(III) hydroxides) and biochemical (metabolism of sulfate-reducing bacteria) processes. The accumulated elements form secondary sulfates, and Hg and Zn selenides. The results provide insights into accumulation of elements in the early history of coal and black shale deposits and have implications for remediation of polluted areas and for secondary enrichment technologies.

Novel cost effective full scale mussel shell bioreactors for metal removal and acid neutralization

Acid mine drainage (AMD) impacted waters are a worldwide concern for the mining industry and countries dealing with this issue; both active and passive technologies are employed for the treatment of such waters. Mussel shell bioreactors (MSB) represent a passive technology that utilizes waste from the shellfish industry as a novel substrate. The aim of this study is to provide insight into the biogeochemical dynamics of a novel full scale MSB for AMD treatment. A combination of water quality data, targeted geochemical extractions, and metagenomic analyses were used to evaluate MSB performance. The MSB raised the effluent pH from 3.4 to 8.3 while removing up to ∼99% of the dissolved Al, and Fe and >90% Ni, Tl, and Zn. A geochemical gradient was observed progressing from oxidized to reduced conditions with depth. The redox conditions helped define the microbial consortium that consists of a specialized niche of organisms that influence elemental cycling (i.e. complex Fe and S cycling). MSB technology represents an economic and effective means of full scale, passive AMD treatment that is an attractive alternative for developing economies due to its low cost and ease of implementation.

The effect of acidic pH and presence of metals as parameters in establishing a sulfidogenic process in anaerobic reactor

The successful use of anaerobic reactors for bioremediation of acid mine drainage has been shown in systems with neutral pH. However, the choice of an efficient and suitable process for such wastewater must consider the capability of operating at acidic pH and in the presence of metals. This work studies the performance of an anaerobic batch reactor, under conditions of varying initial pH for its efficiencies in sulfate removal and metal precipitation from synthetic acid mine drainage. The chemical oxygen demand/sulfate (COD/SO4(2-)) ratio used was 1.00, with ethanol chosen as the only energy and carbon source. The initial pH of the synthetic drainage was progressively set from 7.0 to 4.0 to make it as close as possible to that of real acid mine drainage. Metals were also added starting with iron, zinc, and finally copper. The effectiveness of sulfate and COD removal from the synthetic acid mine drainage increased as the initial pH was reduced. The sulfate removal increased from 38.5 ± 3.7% to 52.2 ± 3%, while the removal of organic matter started at 91.7 ± 2.4% and ended at 99 ± 1%. These results indicate that the sulfate reducing bacteria (SRB) community adapted to lower pH values. The metal removal observed was 88 ± 7% for iron, 98.0 ± 0.5% for zinc and 99 ± 1% for copper. At this stage, an increase in the sulfate removal was observed, which reaches up to 82.2 ± 5.8%. The kinetic parameters for sulfate removal were 0.22 ± 0.04 h(-1) with Fe, 0.26 ± 0.04 h(-1) with Fe and Zn and 0.44 ± 0.04 h(-1) with Fe, Zn, and Cu.

Biological synthesis of nanosized sulfide semiconductors: current status and future prospects

There have been extensive and comprehensive reviews in the field of metal sulfide precipitation in the context of environmental remediation. However, these works have focused mainly on the removal of metals from aqueous solutions-usually, metal-contaminated effluents-with less emphasis on the precipitation process and on the end-products, frequently centering on metal removal efficiencies. Recently, there has been an increasing interest not only in the possible beneficial effects of these bioremediation strategies for metal-rich effluents but also on the formed precipitates. These metal sulfide materials are of special relevance in industry, due to their optical, electronic, and mechanical properties. Hence, identifying new routes for synthesizing these materials, as well as developing methodologies allowing for the control of the shape and size of particulates, is of environmental, economic, and practical importance. Multiple studies have shown proof-of-concept for the biological synthesis of inorganic metallic sulfide nanoparticles (NPs), resorting to varied organisms or cell components, though this information has scarcely been structured and compiled in a systematic manner. In this review, we overview the biological synthesis methodologies of nanosized metal sulfides and the advantages of these strategies when compared to more conventional chemical routes. Furthermore, we highlight the possibility of the use of numerous organisms for the synthesis of different metal sulfide NPs, with emphasis on sulfate-reducing bacteria (SRB). Finally, we put in perspective the potential of these methodologies in the emerging research areas of biohydrometallurgy and nanobiotechnology for the uptake of metals in the form of metal sulfide nanoparticles. A more complete understanding of the principles underlying the (bio)chemistry of formation of solids in these conditions may lead to the large-scale production of such metal sulfides, while simultaneously allowing an enhanced control over the size and shape of these biogenic nanomaterials.

Kinetics and microbial ecology of batch sulfidogenic bioreactors for co-treatment of municipal wastewater and acid mine drainage

The kinetics and microbial ecology in sulfidogenic bioreactors used in a novel two-stage process for co-treatment of acid mine drainage (AMD) and municipal wastewater (MWW) were investigated. Michaelis-Menten modeling of COD oxidation by sulfate reducing bacteria (SRB) (Vmax=0.33mgL(-1)min(-1), Km=4.3mgL(-1)) suggested that the Vmax can be reasonably achieved given the typical COD values in MWW and anticipated mixing with AMD. Non-competitive inhibition modeling (Ki=6.55mgL(-1)) indicated that excessive iron level should be avoided to limit its effects on SRB. The COD oxidation rate was positively correlated to COD/sulfate ratio and SRB population, as evidenced by dsrA gene copies. Phylogenetic analysis revealed diverse microbial communities dominated by sulfate reducing delta-proteobacteria. Microbial community and relative quantities of SRB showed significant differences under different COD/sulfate ratios (0.2, 1 and 2), and the highest dsrA gene concentration and most complex microbial diversity were observed under COD/sulfate ratio 2. Major species were associated with Desulfovirga, Desulfobulbus, Desulfovibrio, and Syntrophus sp. The reported COD kinetics, SRB abundances and the phylogenetic profile provide insights into the co-treatment process and help identify the parameters of concerns for such technology development.

Ultrafine particles derived from mineral processing: A case study of the Pb-Zn sulfide ore with emphasis on lead-bearing colloids

Although mining and mineral processing industry is a vast source of heavy metal pollutants, the formation and behavior of micrometer- and nanometer-sized particles and their aqueous colloids entered the environment from the technological media has received insufficient attention to date. Here, the yield and characteristics of ultrafine mineral entities produced by routine grinding of the Pb-Zn sulfide ore (Gorevskoe ore deposit, Russia) were studied using laser diffraction analysis (LDA), dynamic light scattering (DLS) and zeta potential measurement, microscopy, X-ray photoelectron spectroscopy, with most attention given to toxic lead species. It was revealed, in particular, that the fraction of particles less that 1 μm in the ground ore typical reaches 0.4 vol. %. The aquatic particles in supernatants were micrometer size aggregates with increased content of zinc, sulfur, calcium as compared with the bulk ore concentrations. The hydrodynamic diameter of the colloidal species decreased with time, with their zeta potentials remaining about -12 mV. The colloids produced from galena were composed of 20-50 nm PbS nanoparticles associated with lead sulfate and thiosulfate, while the surface oxidation products at precipitated galena were largely lead oxyhydroxides. The size and zeta potential of the lead-bearing colloids decreased with time down to about 100 nm and from -15 mV to -30 mV, respectively. And, conversely, lead sulfide nanoparticles were mobilized before the aggregates during redispersion of the precipitates in fresh portions of water. The potential environmental impact of the metal-bearing colloids, which is due to the large-scale production and relative stability, is discussed.

A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes

Dissimilatory sulphate reduction is the unifying and defining trait of sulphate-reducing prokaryotes (SRP). In their predominant habitats, sulphate-rich marine sediments, SRP have long been recognized to be major players in the carbon and sulphur cycles. Other, more recently appreciated, ecophysiological roles include activity in the deep biosphere, symbiotic relations, syntrophic associations, human microbiome/health and long-distance electron transfer. SRP include a high diversity of organisms, with large nutritional versatility and broad metabolic capacities, including anaerobic degradation of aromatic compounds and hydrocarbons. Elucidation of novel catabolic capacities as well as progress in the understanding of metabolic and regulatory networks, energy metabolism, evolutionary processes and adaptation to changing environmental conditions has greatly benefited from genomics, functional OMICS approaches and advances in genetic accessibility and biochemical studies. Important biotechnological roles of SRP range from (i) wastewater and off gas treatment, (ii) bioremediation of metals and hydrocarbons and (iii) bioelectrochemistry, to undesired impacts such as (iv) souring in oil reservoirs and other environments, and (v) corrosion of iron and concrete. Here we review recent advances in our understanding of SRPs focusing mainly on works published after 2000. The wealth of publications in this period, covering many diverse areas, is a testimony to the large environmental, biogeochemical and technological relevance of these organisms and how much the field has progressed in these years, although many important questions and applications remain to be explored.

A novel sulfate-reducing bacteria detection method based on inhibition of cysteine protease activity

Sulfate-reducing bacteria (SRB) have been extensively studied in corrosion and environmental science. However, fast enumeration of SRB population is still a difficult task. This work presents a novel specific SRB detection method based on inhibition of cysteine protease activity. The hydrolytic activity of cysteine protease was inhibited by taking advantage of sulfide, the characteristic metabolic product of SRB, to attack active cysteine thiol group in cysteine protease catalytic sites. The active thiol S-sulfhydration process could be used for SRB detection, since the amount of sulfide accumulated in culture medium was highly related with initial bacterial concentration. The working conditions of cysteine protease have been optimized to obtain better detection capability, and the SRB detection performances have been evaluated in this work. The proposed SRB detection method based on inhibition of cysteine protease activity avoided the use of biological recognition elements. In addition, compared with the widely used most probable number (MPN) method which would take up to at least 15days to accomplish whole detection process, the method based on inhibition of papain activity could detect SRB in 2 days, with a detection limit of 5.21×10(2) cfu mL(-1). The detection time for SRB population quantitative analysis was greatly shortened.

Sulfate-reducing bacteria detection based on the photocatalytic property of microbial synthesized ZnS nanoparticles

This work presented a novel method for specific detection of sulfate-reducing bacteria (SRB) based on the photocatalytic property of ZnS nanoparticles. ZnS semiconductor nanoparticles were synthesized by taking advantage of the characteristic bacterial metabolite, sulfide, and then ZnS nanomaterials were used as photocatalyst for methylene blue (MB) photodegradation. As the amount of ZnS photocatalyst synthesized from microbe metabolized sulfide was affected by initial bacterial concentration before cultivation, the photodegradation ratio of MB was highly related with initial SRB concentration. Under the optimized conditions, a linear relationship between the MB photodegradation ratio and the logarithm of SRB concentration was observed in the range of 1.0×10(3)-1.0×10(8) cfu mL(-1). Besides, this proposed method showed excellent specificity for SRB detection. To the best of our knowledge, this is the first example of using the photocatalytic property of microbial synthesized ZnS for bacterial detection.

Metal cycling during sediment early diagenesis in a water reservoir affected by acid mine drainage

The discharge of acid mine drainage (AMD) into a reservoir may seriously affect the water quality. To investigate the metal transfer between the water and the sediment, three cores were collected from the Sancho Reservoir (Iberian Pyrite Belt, SW Spain) during different seasons: turnover event; oxic, stratified period; anoxic and under shallow perennially oxic conditions. The cores were sliced in an oxygen-free atmosphere, after which pore water was extracted by centrifugation and analyzed. A sequential extraction was then applied to the sediments to extract the water-soluble, monosulfide, low crystallinity Fe(III)-oxyhydroxide, crystalline Fe(III)-oxide, organic, pyrite and residual phases. The results showed that, despite the acidic chemistry of the water column (pH<4), the reservoir accumulated a high amount of autochthonous organic matter (up to 12 wt.%). Oxygen was consumed in 1mm of sediment due to organic matter and sulfide oxidation. Below the oxic layer, Fe(III) and sulfate reduction peaks developed concomitantly and the resulting Fe(II) and S(II) were removed as sulfides and probably as S linked to organic matter. During the oxic season, schwertmannite precipitated in the water column and was redissolved in the organic-rich sediment, after which iron and arsenic diffused upwards again to the water column. The flux of precipitates was found to be two orders of magnitude higher than the aqueous one, and therefore the sediment acted as a sink for As and Fe. Trace metals (Cu, Zn, Cd, Pb, Ni, Co) and Al always diffused from the reservoir water and were incorporated into the sediments as sulfides and oxyhydroxides, respectively. In spite of the fact that the benthic fluxes estimated for trace metal and Al were much higher than those reported for lake and marine sediments, they only accounted for less than 10% of their total inventory dissolved in the column water.