Culturable microbial groups and thallium-tolerant fungi in soils with high thallium contamination

Biochemical transformation and bioremediation of thallium in the environment

Thallium (Tl) is a toxic element associated with minerals, and its redistribution is facilitated by both geological and anthropogenic activities. In the natural environment, the transformation and migration of Tl mediated by (micro)organisms have attracted increasing attention. This review presents an overview of the biochemical transformation of Tl and the bioremediation strategies for Tl contamination. In the environment, Tl exists in various forms and originates from diverse sources. The global distribution characteristics of Tl in various media are summarized here, while its speciation and toxicity mechanism to organisms are elucidated. Interactions between (micro)organisms and Tl are commonly observed in the environment. Microbial response mechanisms to typical Tl exposure are analyzed at both species and gene levels, and the possibility of microorganisms as bio-indicators for monitoring Tl contamination is also highlighted. The processes and mechanisms involved in the microbial and benthic mediated transformation of Tl, as well as its enrichment by plants, are discussed. Additionally, in situ bioremediation strategies for Tl contamination and bio-treatment techniques for Tl-containing wastewater are summarized. Finally, the existing knowledge gaps and future research challenges are emphasized, including Tl distribution characteristics in the atmosphere and ocean, the key molecular mechanisms underlying Tl transformation by organisms, the screening of potential Tl oxidizing microorganisms and hyperaccumulators, as well as the revelation of global biogeochemical cycling pathways of Tl.

River sediment microbial community composition and function impacted by thallium spill

Thallium (Tl) is widely used in various industries, which increases the risk of leakage into the environment. Since Tl is highly toxic, it can do a great harm to human health and ecosystem. In order to explore the response of freshwater sediment microorganisms to sudden Tl spill, metagenomic technique was used to elucidate the changes of microbial community composition and functional genes in river sediments. Tl pollution could have profound impacts on microbial community composition and function. Proteobacteria remained the dominance in contaminated szediments, indicating that it had a strong resistance to Tl contamination, and Cyanobacteria also showed a certain resistance. Tl pollution also had a certain screening effect on resistance genes and affected the abundance of resistance genes. Metal resistance genes (MRGs) and antibiotic resistance genes (ARGs) were enriched at the site near the spill site, where Tl concentration was relatively low among polluted sites. When Tl concentration was higher, the screening effect was not obvious and the resistance genes even became lower. Moreover, there was a significant correlation between MRGs and ARGs. In addition, co-occurrence network analysis showed that Sphingopyxis had the most links with resistance genes, indicating that it was the biggest potential host of resistance genes. This study provided new insight towards the shifts in the composition and function of microbial communities after sudden serious Tl contamination.

Microbial diversity in paddy rhizospheric soils around a large industrial thallium-containing sulfide utilization zone

Thallium (Tl) is a rare and extremely toxic metal whose toxicity is significantly higher than cadmium (Cd), lead (Pb) and antimony (Sb). The extensive utilization of Tl-bearing minerals, such as mining activities, has led to severe Tl pollution in a variety of natural settings, while little is known to date about its effect on the microbial diversity in paddy soils. Also, the geochemical behavior of Tl in the periodical alterations between dry and wet conditions of paddy soils remains largely unknown. Herein, the sequential extraction method and 16S rRNA gene sequence analysis were adopted to analyze Tl's migration and transformation behavior and the microbial diversity in the paddy soils with different pollution levels. The results indicated that Tl was mainly concentrated in reducible fraction, which is different from other types of soils, and may be closely attributed to the abundance of Fe-Mn (hydr)oxides in the paddy rhizospheric soils. Further analysis revealed that pH, total S, Pb, Sb, Tl and Cd were the dominant environmental factors, and the enrichment level of these potentially toxic metal(loid)s (PTMs) exerted obvious impacts on the diversity and abundance of microorganism in the rhizospheric soils, and regulating microbial community. The geochemical fractionation of Tl was closely correlated to soil microorganisms such as Fe reducing bacteria (Geothrix) and sulfate reducing bacteria (Anaerolinea), playing a critical role in Tl geochemical cycle through redox reaction. Hence, further study on microorganisms of paddy rhizospheric soils is of great significance to the countermeasures for remediating Tl-polluted paddy fields and protect the health of residents.

Calcium Enhances Thallium Uptake in Green Cabbage (Brassica oleracea var. capitata L.)

Thallium (Tl) is a nonessential and toxic trace metal that is detrimental to plants, but it can be highly up-taken in green cabbage (Brassica oleracea L. var. capitata L.). It has been proven that there is a significant positive correlation between Tl and Calcium (Ca) contents in plants. However, whether Ca presents a similar role for alleviating Tl toxicity in plants remains unclear, and little is known in terms of evidence for both Ca-enhanced uptake of Tl from soils to green cabbage and associated geochemical processes. In this study, we investigated the influence of Ca in soils on Tl uptake in green cabbage and the associated geochemical process. The pot experiments were conducted in 12 mg/kg Tl(I) and 8 mg/kg Tl(III) treatments with various Ca dosages. The results showed that Ca in soils could significantly enhance Tl uptake in green cabbage, increasing 210% in content over the control group. The soluble concentrations of Tl were largely increased by 210% and 150%, respectively, in 3.0 g/kg Ca treatment, compared with the corresponding treatment without Ca addition. This was attributed to the geochemical process in which the enhanced soluble Ca probably replaces Tl held on the soil particles, releasing more soluble Tl into the soil solution. More interestingly, the bioconcentration factor of the leaves and whole plant for the 2.0, 2.5, 3.0 g/kg Ca dosage group were greatly higher than for the non-Ca treatment, which could reach 207%, implying the addition of Ca can improve the ability of green cabbage to transfer Tl from the stems to the leaves. Furthermore, the pH values dropped with the increasing Ca concentration treatment, and the lower pH in soils also increased Tl mobilization, which resulted in Tl accumulation in green cabbage. Therefore, this work not only informs the improvement of agricultural safety management practices for the farming of crops in Tl-polluted and high-Ca-content areas, but also provides technical support for the exploitation of Ca-assisted phytoextraction technology.

Migration and transformation of soil mercury in a karst region of southwest China: Implications for groundwater contamination

Guizhou Province is located in the heart of a karst zone in southwest China, which is one of the largest karst areas in the world. Given the fragile surface ecosystem and highly developed underground karst structure, the migration and transformation of soil Hg may impact groundwater quality in karst environments with high Hg background concentrations. This study examines the vertical migration and transformation of soil mercury (Hg) in two karst catchments, Huilong and Chenqi, with the former containing high Hg contents associated with mineralization and the latter representing regional background Hg. The results show that the soil Hg pool in the Huilong catchment was as high as 44.4 ± 4.2 g m^-2, whereas in the Chenqi catchment was only 0.17±0.02 g m^-2. Compared with farmland soil, forest soil showed a significant loss of Hg. The results of L₃ X-ray absorption near edge structure of Hg indicated that α-HgS, the primary mineral of Hg ore, gradually changed to other mineral types during soil formation. In Huilong catchment, the proportion of organic bound Hg(SR)₂ out of total Hg decreased from 44.0% to 20.3% when soil depth increased from 10 cm to 160 cm in farmland soil profile and from 39.3% to 34.5% in forest soil profile, while the proportion of ionic Hg increased with soil depth, from 4.2% to 10.7% in the farmland soil profile and from 6.7% to 11.6% in the forestland soil profile. Results from the triple-mixing isotope model show that soil Hg accounts for more than 80% Hg in groundwater in the two catchments. Results from this study indicate potential risks of soil Hg entering into groundwater in this karst area.

Unexpected enrichment of thallium and its geochemical behaviors in soils impacted by historically industrial activities using lead‑zinc carbonate minerals

Thallium is a trace metal with severe toxicity. Contamination of thallium (Tl) generated by steel and non-ferrous metals industry is gaining growing concern worldwide. However, little is known on Tl contamination owing to industrial activities using carbonate minerals. This study revealed abundant geochemical mobile/bioavailable Tl (> 65.7%, in average; mostly in oxidizable fraction) in soils from a carbonate-hosted PbZn ore utilizing area in China for the first time. Unexpected Tl enrichment was observed in soil accompanying with 3655, 7820, 100.1, 27.3 and 29.9 mg/kg (in average) of Pb, Zn, As, Cd and Sb, respectively. Characterization using X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS) analysis further confirmed that historical industrial activities impose anthropogenic catastrophic effects on the local agricultural soil system. The ecological and health risk assessment of heavy metal(loid)s in soils proclaimed serious potential non-carcinogenic risks of Pb and V to adults, and Pb, Tl and As to children. Sequential extraction analysis showed that Tl, as well as Pb, Zn, Mn, Co, and Cd, mainly existed in the mobile fractions (exchangeable/acid-extractable, reducible and oxidizable), indicating an ecological risk of biological accumulation of multiple metal(loid)s in this area. These findings provide a theoretical basis for taking appropriate remediation measures in order to ensure safety of soils in such industrial areas likewise.

Mass balance of nine trace elements in two karst catchments in southwest China

High geological background levels of trace elements (TEs) and high population density in the karst areas of southwest China have imposed environmental pressure on the fragile ecosystems in this region. Understanding the mass budget of TEs, especially the toxic ones, is of great importance to sustain future developments. This study investigates the mass balance and fate of nine TEs (cadmium, arsenic, lead, chromium, copper, nickel, zinc, thallium, and antimony) in two karst catchments (Huilong and Chenqi) in southwest China through estimation of their mass budgets in throughfall, open field precipitation, total suspended particulate matter (TSP), litterfall, fertilization, harvested crops, surface runoff, and underground runoff. The estimated net fluxes are positive, indicating a source region, for four elements (Cu, Cr, Ni, and Tl) and negative, indicating a sink region, for five elements (As, Cd, Pb, Sb, and Zn) in both catchments. The net fluxes for the nine elements in Chenqi catchment are within a relatively small range (2.6, 2.0, 1.6, 0.6, -0.05, -0.5, -0.5, -2.9, and -3.3 mg m^-2 yr^-1 for Cu, Ni, Cr, Tl, Cd, Zn, Sb, Pb, and As, respectively), but in Huilong catchment in quite a large range (15.5, 6.0, 1.0, 0.8, -0.3, -0.9, -4.5, -7.5, and -8.7 mg m^-2 yr^-1 for Tl, Cr, Ni, Cu, Cd, Sb, As, Pb, and Zn, respectively). Rainfall (12.3%-66.2%) and litterfall (18.4%-81.3%) are the major input flux pathways, while crops harvest (16%-99%) is the major output flux pathway for the TEs in both catchments, indicating that the fate of TEs is shaped by both natural factors such as precipitation and litterfall and human activities such as fertilization and crop harvesting in these forestland-farmland compound karst catchments. Results from this study suggest that restoring forests from low-yield sloping farmlands will be useful for controlling TEs pollution in these fragile karst regions with high geological background TEs.

Significant mercury efflux from a Karst region in Southwest China - Results from mass balance studies in two catchments

Karst regions have long been recognised as landscapes of ecological vulnerability, however the mass balance and fate of mercury (Hg) in karst regions have not been well documented. This study focused on the largest contiguous karst area in China and investigated Hg mass balance in two catchments, one with high geological Hg (Huilong) and the other representative of regional background Hg (Chenqi). The mass balance of Hg was calculated separately for the two catchments by considering Hg in throughfall, open field precipitation, total suspended particulate matter (TSP), litterfall, fertilizer, crop harvesting, air-surface Hg⁰ exchange, surface runoff and underground runoff. Results show that litterfall Hg deposition is the largest loading (from atmosphere) of Hg in both catchments, accounting for 61.5% and 38.5% of the total Hg input at Huilong and Chenqi, respectively. Air-surface Hg⁰ exchange is the largest efflux, accounting for 71.7% and 44.6% of the total Hg output from Huilong and Chenqi, respectively. Because both catchments are subject to farm and forest land use, cultivation plays an important role in shaping Hg fate. Mercury loading through fertilizer was ranked as the second largest input (28.5%) in Chenqi catchment and Hg efflux through crop harvest was ranked as the second largest output pathway in both Huilong (27.0%) and Chenqi (52.9%). The net Hg fluxes from the catchments are estimated to be 1498 ± 1504 μg m^-2 yr^-1 and 4.8 ± 98.2 μg m^-2 yr^-1. The significantly greater magnitude of net Hg source in Huilong is attributed to higher air-surface Hg⁰ exchange. The output/input ratio of Hg in this study was much greater than has been reported for other forest or agricultural ecosystems and indicates that the karst region of Southwest China is a significant source of atmospheric Hg. The results of this study should be considered in the development of pollution control policies which seek to conserve fragile karst ecosystems characterised by high geological background of Hg.

A new simple, highly sensitive and selective spectrofluorimetric method for the speciation of thallium at pico-trace levels in various complex matrices using N-(pyridin-2-yl)-quinoline-2-carbothioamide

A very simple and non-extractive new spectrofluorimetric method for the determination of TlI and TlIII individually and for mixtures of both analytes at pico-trace levels using N-(pyridin-2-yl)-quinoline-2-carbothioamide (PQCTA) has been developed.

Thallium shifts the bacterial and fungal community structures in thallium mine waste rocks

Thallium (Tl) is a highly toxic metalloid and is considered a priority pollutant by the US Environmental Protection Agency (EPA). Currently, few studies have investigated the distribution patterns of bacterial and fungal microbiomes in Tl-impacted environments. In this study, we used high-throughput sequencing to assess the bacterial and fungal profiles along a gradient of Tl contents in Tl mine waste rocks in southwestern China. Our results showed that Tl had an important, but different influence on the bacterial and fungal diversity indices. Using linear regression analysis, we furtherly divided the dominant bacterial and fungal groups into three distinct microbial sub-communities thriving at high, moderate, and low levels of Tl. Furthermore, our results also showed that Tl is also an important environmental variable that regulates the distribution patterns of ecological clusters and indicator genera. Interestingly, the microbial groups enriched in the samples with high Tl levels were mainly involved in metal and nutrient cycling. Taken together, our results have provided useful information about the responses of bacterial and fungal groups to Tl contamination.

Phytoremediation of polycyclic aromatic hydrocarbons (PAHs) in mangrove sediments using Rhizophora mangle

A phytoremediation experiment was carried out in mesocosms to investigate the performance of Rhizophora mangle in the remediation of polycyclic aromatic hydrocarbons (PAHs) in mangrove sediment contaminated with crude oil. The water pH of the experiments (phytoremediation and natural attenuation) ranged from 4.9 to 8.4 at 0 and 90 days, respectively. The oxy-reduction potential (Eh) ranged from oxidising (108.0 mV, time 0) to reducing (approximately -110.0 mV, time 90) environments. Dissolved oxygen (DO) ranged from 5.7 mg L^-1 (time 0) to 4.5 mg L^-1 and 3.6 mg L^-1 (time 90) in phytoremediation and natural attenuation, respectively. The sediments had silty texture and an average concentration of 5% organic matter (OM). Phytoremediation (60.76%) showed better efficiency in the remediation of the 16 PAHs compared to natural attenuation (49.57%). Principal component analyses showed a correlation between the concentrations of PAHs with pH, Eh, OM and DO in both experiments.

Response of microbial communities and interactions to thallium in contaminated sediments near a pyrite mining area

Thallium (Tl) is a well-recognized hazardous heavy metal with very high toxicity. It is usually concentrated in sulfide minerals, such as pyrite (FeS₂), sphalerite (ZnS), chalcopyrite (CuS) and galena (PbS). Here, this study was carried out to investigate the indigenous microbial communities via 16S rRNA gene sequence analysis in typical surface sediments with various levels of Tl pollution (1.8-16.1 mg/kg) due to acid mine drainage from an active Tl-containing pyrite mining site in South China. It was found with more than 50 phyla from the domain Bacteria and 1 phyla from the domain Archaea. Sequences assigned to the genera Ferroplasma, Leptospirillum, Ferrovum, Metallibacterium, Acidithiobacillus, and Sulfuriferula manifested high relative abundances in all sequencing libraries from the relatively high Tl contamination. Canonical correspondence analysis further uncovered that the overall microbial community in this area was dominantly structured by the geochemical fractionation of Tl and geochemical parameters such as pH and Eh. Spearman's rank correlation analysis indicated a strong positive correlation between acidophilic Fe-metabolizing species and Tl_total, Tl_oxi, and Tl_res. The findings clarify potential roles of such phylotypes in the biogeochemical cycling of Tl, which may facilitate the development of in-situ bioremediation technology for Tl-contaminated sediments.

Distribution and potential ecological risk assessment of trace elements in the stream water and sediments from Lanmuchang area, southwest Guizhou, China

Trace elements contamination in sediment is regarded as the global crisis with a large share in developing countries like China. Water and sediment samples were collected during (2016) from Qingshui Stream and analyzed for major physicochemical properties and trace elements by using ICP-MS. Our result of sediments showed that studied trace elements (except Pb, Cd, Co) had a concentration higher than Chinese sediment guideline as well as stream water data for studied trace elements (except Cr, Pb, Cd, Cu, and Zn) had a higher concentration than the maximum permissible safe limit of WHO. Contamination factor (CF) confirmed a moderate to high contamination in the sediment samples due to As and Tl, respectively. The values of pollution load index (PLI) were found above one (> 1), describing the progressive sediment quality decline. Pearson correlation showed that there was a significant positive association between Tl and As (r = 0.725, p < 0.05) in sediment samples. Results revealed that water-rock interaction, weathering of Tl sulfide mineralization, and hydrogeological conditions were major sources of stream water and sediments contamination in the study area. This experimental study contributes to a better understanding of the geochemistry and prevention of trace element contamination in sediments from Lanmuchang area.

A comparative study to evaluate natural attenuation, mycoaugmentation, phytoremediation, and microbial-assisted phytoremediation strategies for the bioremediation of an aged PAH-polluted soil

Biological treatments are considered an environmentally option to clean-up polluted soil with polycyclic aromatic hydrocarbons (PAHs). A pot experiment was conducted to comparatively evaluate four different strategies, including natural attenuation (NA), mycoaugmentation (M) by using Crucibulum leave, phytoremediation (P) using maize plants, and microbial-assisted phytoremediation (MAP) for the bioremediation of an aged PAH-polluted soil at 180 days. The P treatment had higher affinity degrading 2-3 and 4 ring compounds than NA and M treatments, respectively. However, M and P treatments were more efficient in regards to naphthalene, indeno[l,2,3-c,d]pyrene and benzo[g,h,i]perylene degradation respect to NA. However, 4, 5-6 rings undergo a strong decline during the microbe-assisted phytoremediation, being the treatment which determined the highest rates of PAHs degradation. Sixteen PAH compounds, except fluorene and dibenzo[a,h]anthracene, were found in maize roots, whereas the naphthalene, phenanthrene, anthracene, fluoranthene, and pyrene were accumulated in the shoots, in both P and MAP treatments. However, higher PAH content in maize biomass was achieved during the MAP treatment respect to P treatment. The bioconversion and translocation factors were less than 1, indicating that phystabilization/phytodegradation processes occurred rather than phytoextraction. The microbial biomass, activity and ergosterol content were significantly boosted in the MAP treatment respect to the other treatments at 180 days. Ours results demonstrated that maize-C. laeve association was the most profitable technique for the treatment of an aged PAH-polluted soil when compared to other bioremediation approaches.

Biosorption and bioaccumulation of thallium by thallium-tolerant fungal isolates

Little is known about the biosorption and bioaccumulation capacity of thallium (Tl) by microorganisms that occur in Tl-polluted soil. The present study focused on characterizing the biosorption and bioaccumulation of Tl by Tl-tolerant fungi isolated from Tl-polluted soils. Preliminary data showed a positive correlation between the biomass and the biosorbed Tl content. The Tl-tolerant strains were capable of bioaccumulating Tl, up to 7189 mg kg(-1) dry weight. The subcellular distribution of Tl showed obvious compartmentalization: cytoplasm ≫ cell wall > organelle. The majority of Tl (up to 79%) was found in the cytoplasm, suggesting that intracellular compartmentalization appeared to be responsible for detoxification. These findings further suggest the applicability of the fungal isolates for cleanup of Tl in Tl-polluted water and soil.

Bioaccumulation and biovolatilization of various elements using filamentous fungus Scopulariopsis brevicaulis

Biovolatilization and bioaccumulation capabilities of different elements by microscopic filamentous fungus Scopulariopsis brevicaulis were observed. Accumulation of As(III), As(V), Se(IV), Se(VI), Sb(III), Sb(V), Te(IV), Te(VI), Hg(II), Tl(I) and Bi(III) by S. brevicaulis was quantified by analysing the amount of elements in biomass of the fungus using ICP AAS. The highest amounts of bioaccumulated metal(loid)s were obtained as follows: Bi(III) > Te(IV) > Hg(II) > Se(IV) > Te(VI) > Sb(III) at different initial contents, with Bi(III) accumulation approximately 87%. The highest percentages of volatilization were found using Hg(II) (50%) and Se(IV) (46·5%); it was also demonstrated with all studied elements. This proved the biovolatilization ability of microscopic fungi under aerobic conditions. The highest removed amount was observed using Hg(II) (95·30%), and more than 80% of Se(IV), Te(IV), Bi(III) and Hg(II) was removed by bioaccumulation and biovolatilization, which implies the possibilities of use of these processes for bioremediations. There were reported significant differences between bioaccumulation and biovolatilization of almost all applied metal(loid)s if valence is mentioned.

SIGNIFICANCE AND IMPACT OF THE STUDY

Microbial accumulation and volatilization are natural processes involved in biogeochemical cycles of elements. Despite their impact on mobility, bioavailability and toxicity of various metal(loid)s, only few papers deal with these processes under aerobic conditions with microscopic fungi. Thus, the proving of ability of microscopic fungus Scopulariopsis brevicaulis to accumulate and transform metals and metalloids by methylation or alkylation and quantification of these processes were demonstrated. The results can provide basic information on natural elements cycling and background for more specific studies focusing, for example, on application of these processes in mitigation of metal(loid) contamination.