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Sabolić I, Mira Ó, Brandt DYC, Lisičić D, Stapley J, Novosolov M, Bakarić R, Cizelj I, Glogoški M, Hudina T, Taverne M, Allentoft ME, Nielsen R, Herrel A, Štambuk A. Plastic and genomic change of a newly established lizard population following a founder event. Mol Ecol 2024; 33:e17255. [PMID: 38133599 DOI: 10.1111/mec.17255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 12/06/2023] [Accepted: 12/13/2023] [Indexed: 12/23/2023]
Abstract
Understanding how phenotypic divergence arises among natural populations remains one of the major goals in evolutionary biology. As part of competitive exclusion experiment conducted in 1971, 10 individuals of Italian wall lizard (Podarcis siculus (Rafinesque-Schmaltz, 1810)) were transplanted from Pod Kopište Island to the nearby island of Pod Mrčaru (Adriatic Sea). Merely 35 years after the introduction, the newly established population on Pod Mrčaru Island had shifted their diet from predominantly insectivorous towards omnivorous and changed significantly in a range of morphological, behavioural, physiological and ecological characteristics. Here, we combine genomic and quantitative genetic approaches to determine the relative roles of genetic adaptation and phenotypic plasticity in driving this rapid phenotypic shift. Our results show genome-wide genetic differentiation between ancestral and transplanted population, with weak genetic erosion on Pod Mrčaru Island. Adaptive processes following the founder event are indicated by highly differentiated genomic loci associating with ecologically relevant phenotypic traits, and/or having a putatively adaptive role across multiple lizard populations. Diverged traits related to head size and shape or bite force showed moderate heritability in a crossing experiment, but between-population differences in these traits did not persist in a common garden environment. Our results confirm the existence of sufficient additive genetic variance for traits to evolve under selection while also demonstrating that phenotypic plasticity and/or genotype by environment interactions are the main drivers of population differentiation at this early evolutionary stage.
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Affiliation(s)
- Iva Sabolić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Óscar Mira
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Débora Y C Brandt
- Department of Integrative Biology, University of Berkeley, Berkeley, California, USA
| | - Duje Lisičić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Jessica Stapley
- Department of Environmental Sciences, ETH Zurich, Zurich, Switzerland
| | - Maria Novosolov
- Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Robert Bakarić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Ivan Cizelj
- Zoological Garden of Zagreb, Zagreb, Croatia
| | - Marko Glogoški
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | | | - Maxime Taverne
- C.N.R.S/M.N.H.N., Département d'Ecologie et de Gestion de la Biodiversité, Paris, France
| | - Morten E Allentoft
- Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
- Trace and Environmental DNA (TrEnD) Laboratory, School of Molecular and Life Sciences, Curtin University, Perth, Western Australia, Australia
| | - Rasmus Nielsen
- Department of Integrative Biology, University of Berkeley, Berkeley, California, USA
| | - Anthony Herrel
- C.N.R.S/M.N.H.N., Département d'Ecologie et de Gestion de la Biodiversité, Paris, France
- Department of Biology, Evolutionary Morphology of Vertebrates, Ghent University, Ghent, Belgium
- Department of Biology, University of Antwerp, Wilrijk, Belgium
- Naturhistorisches Museum Bern, Bern, Switzerland
| | - Anamaria Štambuk
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
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2
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Comte L, Bertrand R, Diamond S, Lancaster LT, Pinsky ML, Scheffers BR, Baecher JA, Bandara RMWJ, Chen IC, Lawlor JA, Moore NA, Oliveira BF, Murienne J, Rolland J, Rubenstein MA, Sunday J, Thompson LM, Villalobos F, Weiskopf SR, Lenoir J. Bringing traits back into the equation: A roadmap to understand species redistribution. GLOBAL CHANGE BIOLOGY 2024; 30:e17271. [PMID: 38613240 DOI: 10.1111/gcb.17271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Revised: 03/06/2024] [Accepted: 03/11/2024] [Indexed: 04/14/2024]
Abstract
Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait-based approaches to predict species redistribution under climate change has been called into question. We develop the perspective, supported by evidence, that trait variation, if used carefully can have high potential utility, but that past analyses have in many cases failed to identify an explanatory value for traits by not fully embracing the complexity of species range shifts. First, we discuss the relevant theory linking species traits to range shift processes at the leading (expansion) and trailing (contraction) edges of species distributions and highlight the need to clarify the mechanistic basis of trait-based approaches. Second, we provide a brief overview of range shift-trait studies and identify new opportunities for trait integration that consider range-specific processes and intraspecific variability. Third, we explore the circumstances under which environmental and biotic context dependencies are likely to affect our ability to identify the contribution of species traits to range shift processes. Finally, we propose that revealing the role of traits in shaping species redistribution may likely require accounting for methodological variation arising from the range shift estimation process as well as addressing existing functional, geographical, and phylogenetic biases. We provide a series of considerations for more effectively integrating traits as well as extrinsic and methodological factors into species redistribution research. Together, these analytical approaches promise stronger mechanistic and predictive understanding that can help society mitigate and adapt to the effects of climate change on biodiversity.
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Affiliation(s)
- Lise Comte
- School of Biological Sciences, Illinois State University, Normal, Illinois, USA
- Conservation Science Partners, Inc., Truckee, California, USA
| | - Romain Bertrand
- Centre de Recherche sur la Biodiversité et l'Environnement (CRBE UMR5300), Université de Toulouse, CNRS, IRD, Toulouse INP, Université Toulouse 3 Paul Sabatier (UT3), Toulouse, France
| | - Sarah Diamond
- Department of Biology, Case Western Reserve University, Cleveland, Ohio, USA
| | | | - Malin L Pinsky
- Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, New Jersey, USA
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California, USA
| | - Brett R Scheffers
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, Florida, USA
| | - J Alex Baecher
- School of Natural Resources and Environment, University of Florida, Gainesville, Florida, USA
| | - R M W J Bandara
- Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, New Jersey, USA
| | - I-Ching Chen
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Jake A Lawlor
- Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Nikki A Moore
- Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Brunno F Oliveira
- Fondation pour la Recherche sur la Biodiversité (FRB), Centre de Synthèse et d'Analyse sur la Biodiversité (CESAB), Montpellier, France
| | - Jerome Murienne
- Centre de Recherche sur la Biodiversité et l'Environnement (CRBE UMR5300), Université de Toulouse, CNRS, IRD, Toulouse INP, Université Toulouse 3 Paul Sabatier (UT3), Toulouse, France
| | - Jonathan Rolland
- Centre de Recherche sur la Biodiversité et l'Environnement (CRBE UMR5300), Université de Toulouse, CNRS, IRD, Toulouse INP, Université Toulouse 3 Paul Sabatier (UT3), Toulouse, France
| | - Madeleine A Rubenstein
- U.S. Geological Survey National Climate Adaptation Science Center, Reston, Virginia, USA
| | - Jennifer Sunday
- Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Laura M Thompson
- U.S. Geological Survey National Climate Adaptation Science Center, Reston, Virginia, USA
- School of Natural Resources, University of Tennessee, Knoxville, Tennessee, USA
| | - Fabricio Villalobos
- Red de Biología Evolutiva, Instituto de Ecología A.C. - INECOL, Veracruz, Mexico
| | - Sarah R Weiskopf
- U.S. Geological Survey National Climate Adaptation Science Center, Reston, Virginia, USA
| | - Jonathan Lenoir
- UMR CNRS 7058, Ecologie et Dynamique Des Systèmes Anthropisés (EDYSAN), Université de Picardie Jules Verne, Amiens, France
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3
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Dogantzis KA, Raffiudin R, Putra RE, Shaleh I, Conflitti IM, Pepinelli M, Roberts J, Holmes M, Oldroyd BP, Zayed A, Gloag R. Post-invasion selection acts on standing genetic variation despite a severe founding bottleneck. Curr Biol 2024; 34:1349-1356.e4. [PMID: 38428415 DOI: 10.1016/j.cub.2024.02.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 12/12/2023] [Accepted: 02/06/2024] [Indexed: 03/03/2024]
Abstract
Invasive populations often have lower genetic diversity relative to the native-range populations from which they derive.1,2 Despite this, many biological invaders succeed in their new environments, in part due to rapid adaptation.3,4,5,6 Therefore, the role of genetic bottlenecks in constraining the adaptation of invaders is debated.7,8,9,10 Here, we use whole-genome resequencing of samples from a 10-year time-series dataset, representing the natural invasion of the Asian honey bee (Apis cerana) in Australia, to investigate natural selection occurring in the aftermath of a founding event. We find that Australia's A. cerana population was founded by as few as one colony, whose arrival was followed by a period of rapid population expansion associated with an increase of rare variants.11 The bottleneck resulted in a steep loss of overall genetic diversity, yet we nevertheless detected loci with signatures of positive selection during the first years post-invasion. When we investigated the origin of alleles under selection, we found that selection acted primarily on the variation introduced by founders and not on the variants that arose post-invasion by mutation. In all, our data highlight that selection on standing genetic variation can occur in the early years post-invasion, even where founding bottlenecks are severe.
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Affiliation(s)
- Kathleen A Dogantzis
- York University, Department of Biology, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
| | - Rika Raffiudin
- IPB University, Department of Biology, Faculty of Mathematics and Natural Sciences, Bogor 16680, Indonesia
| | - Ramadhani Eka Putra
- Bandung Institute of Technology, School of Life Sciences and Technology, Bandung 40132, West Java, Indonesia
| | - Ismail Shaleh
- IPB University, Department of Biology, Faculty of Mathematics and Natural Sciences, Bogor 16680, Indonesia
| | - Ida M Conflitti
- York University, Department of Biology, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
| | - Mateus Pepinelli
- York University, Department of Biology, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
| | - John Roberts
- Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT 2601, Australia
| | - Michael Holmes
- University of Sydney, School of Life and Environmental Sciences, Sydney, NSW 2006, Australia
| | - Benjamin P Oldroyd
- University of Sydney, School of Life and Environmental Sciences, Sydney, NSW 2006, Australia
| | - Amro Zayed
- York University, Department of Biology, 4700 Keele Street, Toronto, ON M3J 1P3, Canada.
| | - Rosalyn Gloag
- University of Sydney, School of Life and Environmental Sciences, Sydney, NSW 2006, Australia.
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Kvach Y, Kutsokon Y, Bakuma A, Chebotar S, Demchenko V, Didenko A, Snigirov S, Yuryshynets V. Parasite and genetic diversity of big-scale sand smelt (Atherina boyeri Risso, 1810) populations in their natural and expansion ranges in Ukraine. Parasitol Res 2024; 123:154. [PMID: 38446231 DOI: 10.1007/s00436-024-08174-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 02/27/2024] [Indexed: 03/07/2024]
Abstract
The big-scale sand smelt (Atherina boyeri) is an Atlanto-Mediterranean amphidromous fish species found within the Black Sea. Here, we assess differences in the parasite fauna of big-scale sand smelt populations from their natural range in the northwestern Black Sea and from their expansion range in the Lower and Middle River Dnipro. In addition, we undertook a microsatellite analysis to assess the genetic similarity of fish from the different locations. We found that the parasite community of fish in their natural range was wider than that from their expansion range. While the Gulf of Odesa was most distant from all other localities by parasite community composition and the Dnipro Reservoir was characterised by an absence of parasites (newest and most distant expansion locality), only fish from the Danube Delta showed a significant genetic difference. Our results suggest that the parasite community of big-scale sand smelt is primarily influenced by environmental factors, such as habitat type, water salinity and/or prey composition. Both microsatellite analysis and parasite community species composition (e.g. the presence of the marine Telosentis exiguus in the Kakhovka Reservoir and freshwater Raphidascaris sp. in the Gulf of Odesa) confirmed that populations in the River Dnipro reservoirs had, at some time, been connected with native marine populations, thus also confirming the species' amphidromous nature.
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Affiliation(s)
- Yuriy Kvach
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine.
- Odesa I. I. Mechnikov National University, Dvoryanska St., 2, Odesa, 65002, Ukraine.
| | - Yuliya Kutsokon
- Schmalhausen Institute of Zoology, National Academy of Science of Ukraine, B. Khmelnytskoho St., 15, Kyiv, 01054, Ukraine
| | - Alla Bakuma
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine
| | - Sabina Chebotar
- Odesa I. I. Mechnikov National University, Dvoryanska St., 2, Odesa, 65002, Ukraine
| | - Viktor Demchenko
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine
| | - Alexander Didenko
- Schmalhausen Institute of Zoology, National Academy of Science of Ukraine, B. Khmelnytskoho St., 15, Kyiv, 01054, Ukraine
- Institute of Fisheries, National Academy of Agrarian Science of Ukraine, Obukhivska St., 135, Kyiv, 03164, Ukraine
| | - Sergii Snigirov
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine
- Odesa I. I. Mechnikov National University, Dvoryanska St., 2, Odesa, 65002, Ukraine
| | - Volodymyr Yuryshynets
- Institute of Hydrobiology, National Academy of Science of Ukraine, Volodymyra Ivasyuka Av., 12, Kyiv, 04210, Ukraine
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Bernardi G, Azzurro E, Bariche M, Jimenez C, Kalogirou S, Kleitou P. Invasion genomics of lionfish in the Mediterranean Sea. Ecol Evol 2024; 14:e11087. [PMID: 38450316 PMCID: PMC10915480 DOI: 10.1002/ece3.11087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 02/09/2024] [Accepted: 02/16/2024] [Indexed: 03/08/2024] Open
Abstract
The rate of biological invasions is steadily increasing, with major ecological and economic impacts accounting for billions of dollars in damage as a result. One spectacular example is the western Atlantic invasion by lionfishes. In the Mediterranean Sea, invasions from the Red Sea via the Suez Canal (termed Lessepsian invasions) comprise more than 100 fish species, including a recent invasion by lionfish. In light of the devastating effects of lionfish in the Caribbean Sea, understanding the dynamics of Mediterranean lionfish invasion is crucial. The Lessepsian lionfish invasion started in 2012, and rapidly spread to the central Mediterranean. Here, we used thousands of RAD seq genomic markers to study the population dynamics of this invasion. While we did not find a reduction in genetic diversity between source (Red Sea) and invasive (Mediterranean) populations (i.e., bottleneck effects), we found evidence of population structure within the invasive range in the Mediterranean Sea. We found that loci that are potentially under selection may play an important role in invasion success (in particular, genes involved in osmoregulation and fin spine sizes). Genomic approaches proved powerful in examining the ecological and evolutionary patterns of successful invaders and may be used as tools to understand and potentially mitigate future invasions.
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Affiliation(s)
- Giacomo Bernardi
- Department of Ecology and Evolutionary BiologyUniversity of California Santa CruzSanta CruzCaliforniaUSA
| | - Ernesto Azzurro
- CNR‐IRBIM, National Research CouncilInstitute of Biological Resources and Marine BiotechnologiesAnconaItaly
- Zoological Station A. DohrnNaplesItaly
| | - Michel Bariche
- Department of BiologyAmerican University of BeirutBeirutLebanon
| | - Carlos Jimenez
- Enalia Physis Environmental Research Centre (ENALIA)NicosiaCyprus
- The Cyprus InstituteEnergy Environment and Water Research CenterNicosiaCyprus
| | - Stefanos Kalogirou
- Hellenic Centre for Marine Research, Institute for Marine Biological Resources and Inland WatersHydrobiological Station of RhodesRhodesGreece
| | - Periklis Kleitou
- Marine & Environmental Research (MER) LabLimassolCyprus
- School of Biological and Marine SciencesUniversity of PlymouthPlymouthUK
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Guo W, Li S, Zhan A. eDNA-Based Early Detection Illustrates Rapid Spread of the Non-Native Golden Mussel Introduced into Beijing via Water Diversion. Animals (Basel) 2024; 14:399. [PMID: 38338056 PMCID: PMC10854655 DOI: 10.3390/ani14030399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 01/21/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024] Open
Abstract
The world's largest water diversion, the South-to-North Water Transfer Project (SNWTP) in China, has created an "invasion highway" to introduce invasive golden mussels (Limnoperna fortunei) from the Yangtze River basin to Beijing. To examine the spread and colonization patterns of this newly introduced invasive species, we conducted comprehensive environmental DNA (eDNA)-based early detection and conventional field surveys across all water bodies in five river basins in Beijing from 2020 to 2023. Our results indicated a rapid spread over the past four years. Among the 130 tested sites, the number of sites with positive signals from eDNA analysis exhibited an annual increase: Commencing with four infested sites identified through field surveys in 2019, eDNA analysis detected an additional 13, 11, and 10 positive sites in 2020, 2021, and 2022, respectively, and a substantial rise comprising an additional 28 sites in 2023. Conventional field surveys detected mussels 1-3 years later than eDNA-based analysis at 16 sites. Across all 16 sites, we detected a low population density ranging from 1 to 30 individuals/m2. These findings collectively indicate that the invasions by golden mussels in Beijing are still in their early stages. To date, golden mussels have successfully colonized four out of the five investigated river basins, including the Jiyun River (22.2% positive sites), North Canal River (59.6% positive sites), Chaobai River (40% positive sites), and Yongding River (63.6% positive sites), with the North Canal River and Yongding River being the most heavily infested. Currently, only the Daqing River basin remains uninfested. Given the significant number of infested sites and the ongoing transport of large new propagules via SNWTP, further rapid spread and colonization are anticipated across aquatic ecosystems in Beijing and beyond. Consequently, we call for the proper implementation of effective management strategies, encompassing early detection, risk assessment, and the use of appropriate control measures to mitigate the potential ecological and economic damages in invaded ecosystems.
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Affiliation(s)
- Wei Guo
- Beijing Hydrology Center, Beijing 100089, China;
| | - Shiguo Li
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China;
- University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing 100049, China
| | - Aibin Zhan
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China;
- University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing 100049, China
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Hu LS, Dong YW. Multiple genetic sources facilitate the northward range expansion of an intertidal oyster along China's coast. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2024; 34:e2764. [PMID: 36259430 DOI: 10.1002/eap.2764] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/27/2022] [Accepted: 09/01/2022] [Indexed: 06/16/2023]
Abstract
Coastal artificial structures on the former mudflats provide available habitats for the rocky intertidal species which can establish new populations in these emerging habitats over their former distribution range limits. As a former southern species, the oyster Crassostrea sikamea has become a pioneer and rapidly invaded the artificial shorelines in northern China. We used a seascape genomics approach to investigate the population structure and genetic sources of C. sikamea on the coastal artificial structures, which is crucial for understanding the genetic mechanisms driving species distribution range expansion and invasion pathway of intertidal species. Five C. sikamea populations, including two artificial substrate populations (WGZ and ZAP), one oyster reef population (LS), and two natural rocky shore populations (ZS and XM), were measured using single nucleotide polymorphism (SNPs) obtained from double digest restriction-site associated DNA sequencing (ddRAD-Seq). Redundancy analyses (RDA) were implemented for investigating the relationship between local temperature variables and the temperature adaptability of C. sikamea. Genetic diversity, direction and strength of gene flow, and population structure all revealed that the LS and ZS populations were the genetic sources for the oyster populations on the emerging northern coastal artificial structures. Results of RDA showed that there were different adaptive potentials for northern and southern populations to local temperature variables and the oyster reef population which frequently suffers from heat stress owned high heat adaptability. The ZS population as a genetic source nearby the Yangtze River estuary provided mass larvae for the northern populations, and the other genetic source, the heat-tolerant LS population, in the oyster reef played an important role in the post-settlement success by providing preadapted genotypes. These results highlight the importance of multiple sources with divergent adaptative capabilities for biological invasion, and also emphasize the importance of the oyster reef in coastal biodiversity and conservation.
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Affiliation(s)
- Li-Sha Hu
- The Key Laboratory of Mariculture, Ministry of Education, Fisheries College, Ocean University of China, Qingdao, People's Republic of China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology, Qingdao, People's Republic of China
| | - Yun-Wei Dong
- The Key Laboratory of Mariculture, Ministry of Education, Fisheries College, Ocean University of China, Qingdao, People's Republic of China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology, Qingdao, People's Republic of China
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Tolley-Jordan LR, Chadwick MA, Triplett JK. DNA barcoding indicates multiple invasions of the freshwater snail Melanoides tuberculata sensu lato in Florida. PLoS One 2023; 18:e0292164. [PMID: 38134194 PMCID: PMC10745163 DOI: 10.1371/journal.pone.0292164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 09/13/2023] [Indexed: 12/24/2023] Open
Abstract
Melanoides tuberculata sensu lato (Thiaridae) are polymorphic female-clonal snails of Asian and African origins that have invaded freshwaters worldwide, including those in Florida. Although the snails have been documented in Florida for at least 70 years, no studies have investigated whether the observed distribution is due to a single introduction or multiple independent invasions. Here, cytochrome oxidase I was used to measure genetic diversity within and among sites in Florida and compare genetic diversity between Florida and other regions of the world. We also examined the relationship between shell morphology and haplotype diversity to determine if shell morphs can serve as a proxy for haplotypes. In total, we recovered 8 haplotypes randomly distributed across populations in Florida. Phylogenetic reconstruction supported the hypothesis of multiple invasions by diverse representatives of the M. tuberculata species complex. In contrast, shell morphology was not found to be a useful phylogeographic character, with divergent haplotypes represented by similar shell forms. These results suggest that the observed invasion patterns in Florida are best explained by serial introductions, and that shell morphology cannot be used to predict haplotypes or reconstruct invasion history of Melanoides tuberculata s.l. and that extensive taxonomic revisions are needed to investigate invasion dynamics.
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Affiliation(s)
- Lori R. Tolley-Jordan
- Dept. of Biology, Jacksonville State University, Jacksonville, AL, United States of America
| | | | - Jimmy K. Triplett
- Dept. of Biology, Jacksonville State University, Jacksonville, AL, United States of America
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Benavente JN, Véliz D, Quezada-Romegialli C, Gomez-Uchida D. Uniparental and biparental markers unravel invasion pathways, population admixture, and genetic structure in naturalized rainbow trout (Oncorhynchus mykiss). JOURNAL OF FISH BIOLOGY 2023; 103:1277-1288. [PMID: 37535430 DOI: 10.1111/jfb.15520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 06/27/2023] [Accepted: 08/02/2023] [Indexed: 08/05/2023]
Abstract
The present study combined uniparental mtDNA and biparental SNPs to illuminate the invasion and colonization pathways of rainbow trout, Oncorhynchus mykiss, one of the world's most widespread invasive fishes, that has been intensively propagated in Chile, South America. The specific aims of the study were (i) to evaluate potential donor populations, which could be either from the species' native range in North America or from introduced populations in Europe, by comparing mtDNA D-loop/control region haplotypes; and (ii) to assess the factors that have shaped genetic diversity and contemporary genetic structure of rainbow trout populations introduced to Chile through SNP genotyping. The authors comprehensively sampled 24 sites in 12 basins ranging from the High Andean Plateau (Altiplano, 18° S) to northern Patagonia (41° S). Results of the mtDNA data of naturalized trout populations from rivers in the Altiplano (northern Chile) differed from those collected in central and southern Chile, suggesting an origin from North American hatcheries. Naturalized trout populations in central and southern Chile, on the contrary, shared haplotypes with specimens found in European hatcheries. The southern and central Chile populations also contained rare haplotypes, possibly indicating potential spread through aquaculture escapes. Results of the SNP analysis revealed higher allelic richness for trout sampled in sites influenced by commercial aquaculture than sites without commercial aquaculture, likely due to increased admixture between aquaculture broodstock and naturalized trout. The analysis further uncovered some complex patterns of divergent trout populations with low genetic diversity as well as increased relatedness between individuals from isolated sites, suggesting possible local populations. A comprehensive characterization of genetic diversity and structure of rainbow trout should help identify management areas that may augment socioeconomic benefits while preventing the spread and further impacts on biodiversity.
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Affiliation(s)
- Javiera N Benavente
- Departmento de Ciencias Ecológicas, Universidad de Chile, Santiago, Chile
- Genomics in Ecology, Evolution and Conservation Lab, Departmento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - David Véliz
- Departmento de Ciencias Ecológicas, Universidad de Chile, Santiago, Chile
- Centro de Ecología y Manejo de Islas Oceánicas (ESMOI), Coquimbo, Chile
| | - Claudio Quezada-Romegialli
- Plataforma de Monitoreo Genómico y Ambiental (PGMA), Departamento de Química, Facultad de Ciencias, Universidad de Tarapacá, Tarapacá, Chile
| | - Daniel Gomez-Uchida
- Genomics in Ecology, Evolution and Conservation Lab, Departmento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
- Núcleo Milenio INVASAL, Concepción, Chile
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10
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Arcángel AE, Rodríguez EA, Saad JF, de la Barra P, Narvarte MA, Storero LP, Pereyra PJ. Same species, different population dynamics: Spatio-temporal differences of Undaria pinnatifida (Ochrophyta, Phaeophyceae) in the intertidal of North Patagonia, Argentina. JOURNAL OF PHYCOLOGY 2023; 59:1310-1322. [PMID: 37817449 DOI: 10.1111/jpy.13395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 08/11/2023] [Accepted: 09/19/2023] [Indexed: 10/12/2023]
Abstract
Population dynamics can be influenced by physical and biological factors, particularly in stressful environments. Introduced species usually have great physiological plasticity, resulting in populations with different traits. Undaria pinnatifida, a macroalga originally described from northeast Asia, was introduced in Northern Patagonia, Argentina (San Matías Gulf) around 2010. To describe the spatio-temporal variability in population structure and morphometry of U. pinnatifida, we conducted monthly field samplings for 2 years at the intertidal area of two contrasting sites in the San Matías Gulf. Individuals of U. pinnatifida were classified by developmental stage, and their morpho-gravimetric variables were measured. In both intertidal sites juveniles were found in higher proportion during austral autumn and grew and matured during the autumn-winter months (from May onwards), and individuals senesced during early austral summer (December and January). Conversely, density and biomass were largely different between sites, and individuals showed slight morphological variability between sites. Environmental (e.g., nutrient concentration, available substrate) and biological factors (e.g., facilitation, competition) may explain the observed differences. Since there is not a macroalga with U. pinnatifida morphometrical characteristics in the intertidal environments of San Matías Gulf, studying this recent introduction gives us a better understanding of its potential ecological effects.
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Affiliation(s)
- Andrea Evangelina Arcángel
- Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos Almirante Storni (CIMAS), San Antonio Oeste, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- Escuela Superior de Ciencias Marinas-Universidad Nacional del Comahue, San Antonio Oeste, Argentina
| | - Emiliano Alexis Rodríguez
- Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos Almirante Storni (CIMAS), San Antonio Oeste, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- Escuela Superior de Ciencias Marinas-Universidad Nacional del Comahue, San Antonio Oeste, Argentina
| | - Juan Francisco Saad
- Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos Almirante Storni (CIMAS), San Antonio Oeste, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- Escuela Superior de Ciencias Marinas-Universidad Nacional del Comahue, San Antonio Oeste, Argentina
| | - Paula de la Barra
- Coastal Systems Department, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Maite Andrea Narvarte
- Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos Almirante Storni (CIMAS), San Antonio Oeste, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- Escuela Superior de Ciencias Marinas-Universidad Nacional del Comahue, San Antonio Oeste, Argentina
| | - Lorena Pía Storero
- Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos Almirante Storni (CIMAS), San Antonio Oeste, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- Escuela Superior de Ciencias Marinas-Universidad Nacional del Comahue, San Antonio Oeste, Argentina
| | - Patricio Javier Pereyra
- Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos Almirante Storni (CIMAS), San Antonio Oeste, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
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11
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Jiang H, Zhang Y, Tu W, Sun G, Wu N, Zhang Y. The General Trends of Genetic Diversity Change in Alien Plants' Invasion. PLANTS (BASEL, SWITZERLAND) 2023; 12:2690. [PMID: 37514304 PMCID: PMC10385407 DOI: 10.3390/plants12142690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 07/11/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023]
Abstract
Genetic diversity is associated with invasion dynamics during establishment and expansion stages by affecting the viability and adaptive potential of exotics. There have been many reports on the comparison between the genetic diversity of invasive alien species (IAS) in and out of their native habitats, but the conclusions were usually inconsistent. In this work, a standard meta-analysis of the genetic diversity of 19 invasive plants based on 26 previous studies was carried out to investigate the general trend for the change of IASs' genetic diversity during their invasion process and its real correlation with the invasion fate. Those 26 studies were screened from a total of 3557 peer-reviewed publications from the ISI Web of Science database during the period of January 2000 to May 2022. Based on the selected studies in this work, a general reduction of IASs' genetic diversity was found in non-native populations compared to that in native ones, while the difference was not significant. This finding suggested that regardless of the change in genetic diversity, it had no substantial effect on the outcome of the invasion process. Therefore, genetic diversity might not serve as a reliable indicator for risk assessment and prediction of invasion dynamic prediction in the case of IASs.
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Affiliation(s)
- Han Jiang
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yi Zhang
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Wenqin Tu
- State Key Laboratory of Earth Surface Processes and Resource Ecology, College of Life Sciences, Beijing Normal University, Beijing 100875, China
| | - Geng Sun
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Ning Wu
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Yongmei Zhang
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
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12
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Choi I, Han E, Wojciechowski MF, Heo T, Park J, Yang J, Gantsetseg A, Cheon K, Tamaki I, Lee J. The genetic structure and demographic history of Zabelia tyaihyonii, endemic to Korean limestone karst forests, based on genome-wide SNP markers. Ecol Evol 2023; 13:e10252. [PMID: 37404698 PMCID: PMC10316687 DOI: 10.1002/ece3.10252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 06/13/2023] [Accepted: 06/20/2023] [Indexed: 07/06/2023] Open
Abstract
Similar to the global phenomenon, many plant species endemic to Korean limestone karst forests are at risk of extinction due to human intervention. Zabelia tyaihyonii is a familiar shrub, called "Hardy abelia" and "Fragrant abelia" growing in the karst forests of Korea, where it is one of the most threatened species. We investigated the genetic structure and demographic history of Z. tyaihyonii, which allow us to develop appropriate conservation and management strategies. The genetic structure was evaluated using a total of 187 samples from 14 populations, covering the entire distribution of Z. tyaihyonii in South Korea. We utilized 254 and 1753 SNP loci obtained via MIG-seq (Multiplexed ISSR Genotyping by sequencing) for structure and demographic analyses, respectively. The population demographic modeling was performed with site frequency spectrum. To gain further historical insights, we also employed ENM (Ecological Niche Modeling). We found two distinct clusters (CLI and CLII) of ancient origin (ca. 490 ka). Despite CLII experiencing a more severe bottleneck, both clusters showed similar levels of genetic diversity, indicating mutual historical gene flow. Their historical distribution range seems to have changed very little. We proposed a historical distribution scenario for Z. tyaihyonii, taking into account its intrinsic factors, and emphasized a more complex response to Quaternary climate change beyond simple allopatric speciation models. These findings provide valuable insights for conservation and management strategies for Z. tyaihyonii.
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Affiliation(s)
- In‐Su Choi
- Department of Biological Sciences and BiotechnologyHannam UniversityDaejeonKorea
| | - Eun‐Kyeong Han
- Department of Biology EducationChonnam National UniversityGwangjuKorea
| | | | - Tae‐Im Heo
- Division of Baekdudaegan Biodiversity ConservationBaekdudaegan National ArboretumBonghwaKorea
| | - Jong‐Soo Park
- Division of BotanyHonam National Institute of Biological ResourcesMokpoKorea
| | - Jong‐Cheol Yang
- Division of Baekdudaegan Biodiversity ConservationBaekdudaegan National ArboretumBonghwaKorea
| | | | | | | | - Jung‐Hyun Lee
- Department of Biology EducationChonnam National UniversityGwangjuKorea
- School of Life SciencesArizona State UniversityTempeArizonaUSA
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13
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Zimmer EA, Berg JA, Dudash MR. Genetic diversity and population structure among native, naturalized, and invasive populations of the common yellow monkeyflower, Mimulus guttatus (Phrymaceae). Ecol Evol 2023; 13:e9596. [PMID: 37038527 PMCID: PMC10082173 DOI: 10.1002/ece3.9596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 03/01/2022] [Accepted: 03/28/2022] [Indexed: 04/12/2023] Open
Abstract
An ongoing controversy in invasion biology is the prevalence of colonizing plant populations that are able to establish and spread, while maintaining limited amounts of genetic variation. Invasive populations can be established through several routes including from a single source or from multiple introductions. The aim of this study was to examine genetic diversity in populations of Mimulus guttatus in the United Kingdom, where the species is considered invasive, and compare this diversity to that in native populations on the west coast of North America. Additionally, we looked at diversity in non-native populations that have not yet become invasive (naturalized populations) in eastern North America. We investigated population structure among populations in these three regions and attempted to uncover the sources for populations that have established in the naturalized and invasive regions. We found that genetic diversity was, on average, relatively high in populations from the invasive UK region and comparable to native populations. Contrastingly, two naturalized M. guttatus populations were low in both genetic and genotypic diversity, indicating a history of asexual reproduction and self-fertilization. A third naturalized population was found to be a polyploid Mimulus hybrid of unknown origin. Our results demonstrate that M. guttatus has likely achieved colonization success outside of its native western North America distribution by a variety of establishment pathways, including those with genetic and demographic benefits resulting from multiple introductions in the UK, reproductive assurance through selfing, and asexual reproduction in eastern North America, and possible polyploidization in one Canadian population.
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Affiliation(s)
- Elizabeth A. Zimmer
- Department of Botany and Laboratories of Analytical Biology, National Museum of Natural HistorySmithsonian InstitutionWashingtonDistrict of ColumbiaUSA
| | - Jason A. Berg
- Department of Biological SciencesUniversity of MarylandCollege ParkMarylandUSA
| | - Michele R. Dudash
- Department of Biological SciencesUniversity of MarylandCollege ParkMarylandUSA
- Department of Natural Resource ManagementSouth Dakota State UniversityBrookingsSouth DakotaUSA
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14
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Yu X, Chen F, Chen Z, Wei P, Song X, Liu C, Liu T, Li X, Liu X. Genetic diversity and gene expression diversity shape the adaptive pattern of the aquatic plant Batrachium bungei along an altitudinal gradient on the Qinghai-Tibet plateau. PLANT MOLECULAR BIOLOGY 2023; 111:275-290. [PMID: 36534297 DOI: 10.1007/s11103-022-01326-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 11/24/2022] [Indexed: 05/22/2023]
Abstract
It is an intriguing issue of evolutionary biology how genetic diversity and gene expression diversity shape the adaptive patterns. Comparative transcriptomic studies of wild populations in extreme environments provide critical insights into the relative contribution of genetic and expressive components. In this study, we analyzed the genetic diversity and gene expression diversity of 20 populations of the aquatic plant Batrachium bungei along elevations ranging from 2690 to 4896 m on the Qinghai-Tibet plateau (QTP). Based on single nucleotide polymorphisms (SNPs) and gene expression data from 100 individuals of B. bungei, we found that variation in genetic sequence was more sensitive to detect weak differentiation than gene expression. Using 292,613 high-quality SNPs, we documented a significant phylogeographical structure, a low within-population genetic diversity, and a high inter-population genetic differentiation in B. bungei populations. Analysis of relationship between geographic distance, genetic distance, and gene expression similarity showed that geographic isolation shaped gene flow patterns but not gene expression patterns. We observed a negative relationship between genetic diversity and gene expression diversity within and among B. bungei populations, and we demonstrated that as environmental conditions worsen with increasing altitude, genetic diversity played an increased role in maintaining the stability of populations, while the corresponding role of gene expression diversity decreased. These results suggested that genetic diversity and gene expression diversity might act as a complementary mechanism contributing to the long-term survival of B. bungei in extreme environments.
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Affiliation(s)
- Xiaolei Yu
- State Key Laboratory of Hybrid Rice, Laboratory of Plant Systematics and Evolutionary Biology, College of Life Sciences, Wuhan University, Wuhan, 430072, Hubei, China
| | - Feifei Chen
- Laboratory of Extreme Environmental Biological Resources and Adaptive Evolution, Research Center for Ecology, School of Sciences, Tibet University, Lhasa, 850000, Tibet, China
| | - Zhuyifu Chen
- State Key Laboratory of Hybrid Rice, Laboratory of Plant Systematics and Evolutionary Biology, College of Life Sciences, Wuhan University, Wuhan, 430072, Hubei, China
| | - Pei Wei
- State Key Laboratory of Hybrid Rice, Laboratory of Plant Systematics and Evolutionary Biology, College of Life Sciences, Wuhan University, Wuhan, 430072, Hubei, China
| | - Xiaoli Song
- State Key Laboratory of Hybrid Rice, Laboratory of Plant Systematics and Evolutionary Biology, College of Life Sciences, Wuhan University, Wuhan, 430072, Hubei, China
| | - Chenlai Liu
- State Key Laboratory of Hybrid Rice, Laboratory of Plant Systematics and Evolutionary Biology, College of Life Sciences, Wuhan University, Wuhan, 430072, Hubei, China
| | - Tailong Liu
- Laboratory of Extreme Environmental Biological Resources and Adaptive Evolution, Research Center for Ecology, School of Sciences, Tibet University, Lhasa, 850000, Tibet, China
| | - Xiaoyan Li
- Biology Experimental Teaching Center, School of Life Science, Wuhan University, Wuhan, 430072, Hubei, China.
| | - Xing Liu
- State Key Laboratory of Hybrid Rice, Laboratory of Plant Systematics and Evolutionary Biology, College of Life Sciences, Wuhan University, Wuhan, 430072, Hubei, China.
- Laboratory of Extreme Environmental Biological Resources and Adaptive Evolution, Research Center for Ecology, School of Sciences, Tibet University, Lhasa, 850000, Tibet, China.
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15
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Trait variation in a successful global invader: a large-scale analysis of morphological variance and integration in the brown trout. Biol Invasions 2023. [DOI: 10.1007/s10530-023-03003-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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16
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Daly EZ, Chabrerie O, Massol F, Facon B, Hess MC, Tasiemski A, Grandjean F, Chauvat M, Viard F, Forey E, Folcher L, Buisson E, Boivin T, Baltora‐Rosset S, Ulmer R, Gibert P, Thiébaut G, Pantel JH, Heger T, Richardson DM, Renault D. A synthesis of biological invasion hypotheses associated with the introduction–naturalisation–invasion continuum. OIKOS 2023. [DOI: 10.1111/oik.09645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Ella Z. Daly
- Univ. of Rennes, CNRS, ECOBIO (Ecosystèmes, Biodiversité, Evolution), UMR 6553 Rennes France
| | - Olivier Chabrerie
- Univ. de Picardie Jules Verne, UMR 7058 CNRS EDYSAN Amiens Cedex 1 France
| | - Francois Massol
- Univ. Lille, CNRS, Inserm, CHU Lille, Inst. Pasteur de Lille, U1019 – UMR 9017 – CIIL – Center for Infection and Immunity of Lille Lille France
| | - Benoit Facon
- CBGP, INRAE, CIRAD, IRD, Montpellier Institut Agro, Univ. Montpellier Montpellier France
| | - Manon C.M. Hess
- Inst. Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), UMR: Aix Marseille Univ., Avignon Université, CNRS, IRD France
- Inst. de Recherche pour la Conservation des zones Humides Méditerranéennes Tour du Valat, Le Sambuc Arles France
| | - Aurélie Tasiemski
- Univ. Lille, CNRS, Inserm, CHU Lille, Inst. Pasteur de Lille, U1019 – UMR 9017 – CIIL – Center for Infection and Immunity of Lille Lille France
| | - Frédéric Grandjean
- Univ. de Poitiers, UMR CNRS 7267 EBI‐Ecologie et Biologie des Interactions, équipe EES Poitiers Cedex 09 France
| | | | | | - Estelle Forey
- Normandie Univ., UNIROUEN, INRAE, USC ECODIV Rouen France
| | - Laurent Folcher
- ANSES – Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail, Laboratoire de la Santé des Végétaux – Unité de Nématologie Le Rheu France
| | - Elise Buisson
- Inst. Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), UMR: Aix Marseille Univ., Avignon Université, CNRS, IRD France
| | - Thomas Boivin
- INRAE, UR629 Écologie des Forêts Méditerranéennes, Centre de Recherche Provence‐Alpes‐Côte d'Azur Avignon France
| | | | - Romain Ulmer
- Univ. de Picardie Jules Verne, UMR 7058 CNRS EDYSAN Amiens Cedex 1 France
| | - Patricia Gibert
- UMR 5558 CNRS – Univ. Claude Bernard Lyon 1, Biométrie et Biologie Evolutive, Bât. Gregor Mendel Villeurbanne Cedex France
| | - Gabrielle Thiébaut
- Univ. of Rennes, CNRS, ECOBIO (Ecosystèmes, Biodiversité, Evolution), UMR 6553 Rennes France
| | - Jelena H. Pantel
- Ecological Modelling, Faculty of Biology, Univ. of Duisburg‐Essen Essen Germany
| | - Tina Heger
- Leibniz Inst. of Freshwater Ecology and Inland Fisheries (IGB) Berlin Germany
- Technical Univ. of Munich, Restoration Ecology Freising Germany
| | - David M. Richardson
- Centre for Invasion Biology, Dept. Botany & Zoology, Stellenbosch University Stellenbosch South Africa
- Inst. of Botany, Czech Academy of Sciences Průhonice Czech Republic
| | - David Renault
- Univ. of Rennes, CNRS, ECOBIO (Ecosystèmes, Biodiversité, Evolution), UMR 6553 Rennes France
- Inst. Universitaire de France Paris Cedex 05 France
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17
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Another Chapter in the History of the European Invasion by the Western Conifer Seed Bug, Leptoglossus occidentalis: The Iberian Peninsula. DIVERSITY 2023. [DOI: 10.3390/d15010064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The Western conifer seed bug, Leptoglossus occidentalis, is native to North America and has already been considered a significant pest in several European countries since its first observation in Italy in 1999. In Spain and Portugal, it was recorded for the first time in 2003 and 2010, respectively, and its impact on Stone Pine (Pinus pinea) is of major concern. Before developing control measures for this insect pest, it is paramount to clarify its spatiotemporal dynamics of invasion. Therefore, in this study, we aimed to (a) characterise the genetic structure and diversity and (b) invasion pathways of L. occidentalis populations in the Iberian Peninsula. To do so, specimens of L. occidentalis were collected at fourteen sites widely distributed within the Iberian Peninsula. We used mtDNA sequences of Cytochrome b and eleven microsatellite markers to characterise the genetic diversity and the population structure in the Iberian Peninsula. Our genetic results combined with the observational dates strongly support a stratified expansion of L. occidentalis invasion in the Iberian Peninsula proceeding from multiple introductions, including at least one in Barcelona, one in Valencia, and one in the west coast or in the Southeastern region.
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18
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Bernos TA, Avlijaš S, Hill J, Morissette O, Ricciardi A, Mandrak NE, Jeffries KM. Genetic diversity and structure of a recent fish invasion: Tench ( Tinca tinca) in eastern North America. Evol Appl 2023; 16:173-188. [PMID: 36699124 PMCID: PMC9850014 DOI: 10.1111/eva.13520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 10/22/2022] [Accepted: 12/02/2022] [Indexed: 01/20/2023] Open
Abstract
Introduced and geographically expanding populations experience similar eco-evolutionary challenges, including founder events, genetic bottlenecks, and novel environments. Theory predicts that reduced genetic diversity resulting from such phenomena limits the success of introduced populations. Using 1900 SNPs obtained from restriction-site-associated DNA sequencing, we evaluated hypotheses related to the invasion history and connectivity of an invasive population of Tench (Tinca tinca), a Eurasian freshwater fish that has been expanding geographically in eastern North America for three decades. Consistent with the reported history of a single introduction event, our findings suggest that multiple introductions from distinct genetic sources are unlikely as Tench had a small effective population size (~114 [95% CI = 106-123] individuals), no strong population subdivision across time and space, and evidence of a recent genetic bottleneck. The large genetic neighbourhood size (220 km) and weak within-population genetic substructure suggested high connectivity across the invaded range, despite the relatively large area occupied. There was some evidence for a small decay in genetic diversity as the species expanded northward, but not southward, into new habitats. As eradicating the species within a ~112 km radius would be necessary to prevent recolonization, eradicating Tench is likely not feasible at watershed-and possibly local-scales. Management should instead focus on reducing abundance in priority conservation areas to mitigate adverse impacts. Our study indicates that introduced populations can thrive and exhibit relatively high levels of genetic diversity despite severe bottlenecks (<1.5% of the ancestral effective population size) and suggests that landscape heterogeneity and population demographics can generate variability in spatial patterns of genetic diversity within a single range expansion.
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Affiliation(s)
- Thaïs A. Bernos
- Department of Ecology and Evolutionary BiologyUniversity of TorontoTorontoOntarioCanada
- Department of Biological SciencesUniversity of Toronto ScarboroughScarboroughOntarioCanada
| | - Sunčica Avlijaš
- Redpath MuseumMcGill UniversityMontrealQuébecCanada
- Department of BiologyMcGill UniversityMontrealQuébecCanada
| | - Jaclyn Hill
- Maurice Lamontagne InstituteFisheries and Oceans CanadaMont‐JoliQuébecCanada
| | - Olivier Morissette
- Département des Sciences FondamentalesUniversité du Québec à ChicoutimiChicoutimiQuébecCanada
| | | | - Nicholas E. Mandrak
- Department of Ecology and Evolutionary BiologyUniversity of TorontoTorontoOntarioCanada
| | - Kenneth M. Jeffries
- Department of Biological SciencesUniversity of ManitobaWinnipegManitobaCanada
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19
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Zhang H, Tang Y, Li Q, Zhao S, Zhang Z, Chen Y, Shen Z, Chen C. Genetic and epigenetic variation separately contribute to range expansion and local metalliferous habitat adaptation during invasions of Chenopodium ambrosioides into China. ANNALS OF BOTANY 2022; 130:1041-1056. [PMID: 36413156 PMCID: PMC9851312 DOI: 10.1093/aob/mcac139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 11/18/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND AND AIMS Invasive plants often colonize wide-ranging geographical areas with various local microenvironments. The specific roles of epigenetic and genetic variation during such expansion are still unclear. Chenopodium ambrosioides is a well-known invasive alien species in China that can thrive in metalliferous habitats. This study aims to comprehensively understand the effects of genetic and epigenetic variation on the successful invasion of C. ambrosioides. METHODS We sampled 367 individuals from 21 heavy metal-contaminated and uncontaminated sites with a wide geographical distribution in regions of China. We obtained environmental factors of these sampling sites, including 13 meteorological factors and the contents of four heavy metals in soils. Microsatellite markers were used to investigate the demographic history of C. ambrosioides populations in China. We also analysed the effect of epigenetic variation on metalliferous microhabitat adaptation using methylation-sensitive amplified polymorphism (MSAP) markers. A common garden experiment was conducted to compare heritable phenotypic variations among populations. KEY RESULTS Two distinct genetic clusters that diverged thousands of years ago were identified, suggesting that the eastern and south-western C. ambrosioides populations in China may have originated from independent introduction events without recombination. Genetic variation was shown to be a dominant determinant of phenotypic differentiation relative to epigenetic variation, and further affected the geographical distribution pattern of invasive C. ambrosioides. The global DNA unmethylation level was reduced in metalliferous habitats. Dozens of methylated loci were significantly associated with the heavy metal accumulation trait of C. ambrosioides and may contribute to coping with metalliferous microenvironments. CONCLUSIONS Our study of C. ambrosioides highlighted the dominant roles of genetic variation in large geographical range expansion and epigenetic variation in local metalliferous habitat adaptation.
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Affiliation(s)
- Hanchao Zhang
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Yongwei Tang
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Quanyuan Li
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Shangjun Zhao
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Zhou Zhang
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Yahua Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
- Jiangsu Collaborative Innovation Centre for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Zhenguo Shen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
- Jiangsu Collaborative Innovation Centre for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
| | - Chen Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
- Jiangsu Collaborative Innovation Centre for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, Jiangsu, PR China
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20
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Konopiński MK, Fijarczyk AM, Biedrzycka A. Complex patterns shape immune genes diversity during invasion of common raccoon in Europe - Selection in action despite genetic drift. Evol Appl 2022; 16:134-151. [PMID: 36699132 PMCID: PMC9850017 DOI: 10.1111/eva.13517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 11/24/2022] [Accepted: 11/28/2022] [Indexed: 12/14/2022] Open
Abstract
Rapid adaptation is common in invasive populations and is crucial to their long-term success. The primary target of selection in the invasive species' new range is standing genetic variation. Therefore, genetic drift and natural selection acting on existing variation are key evolutionary processes through which invaders will evolve over a short timescale. In this study, we used the case of the raccoon Procyon lotor invasion in Europe to identify the forces shaping the diversity of immune genes during invasion. The genes involved in the defence against infection should be under intense selection pressure in the invasive range where novel pathogens are expected to occur. To disentangle the selective and demographic processes shaping the adaptive immune diversity of its invasive and expanding populations, we have developed species-specific single-nucleotide polymorphism markers located in the coding regions of targeted immune-related genes. We characterised the genetic diversity of 110 functionally important immune genes in two invasive and one native raccoon genetic clusters, each presenting a different demographic history. Despite the strong effect of demographic processes in the invasive clusters, we detected a subset of genes exhibiting the diversity pattern suggestive of selection. The most likely process shaping the variation in those genes was balancing selection. The selected genes belong to toll-like receptors and cytokine-related genes. Our results suggest that the prevalence of selection depends on the level of diversity, that is - less genetically diverse invasive population from the Czech Republic displayed fewer signs of selection. Our results highlight the role of standing genetic variation in adapting to new environment. Understanding the evolutionary mechanisms behind invasion success would enable predicting how populations may respond to environmental change.
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Affiliation(s)
| | - Anna M. Fijarczyk
- Laval University Département de BiologieUniversité LavalQuébecQuébecCanada
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21
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Vinarski MV, Voroshilova IS, Gusakov VA. Physella acuta (Draparnaud, 1805) (Mollusca: Gastropoda: Physidae) in the Dong Nai River Basin (Lam Dong Province, Vietnam): Genetic and Morphological Identification. RUSSIAN JOURNAL OF BIOLOGICAL INVASIONS 2022. [DOI: 10.1134/s2075111722040142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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22
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Blüml C, Ramm SA, van Benthem KJ, Wittmann MJ. Waiting for love but not forever: Modeling the evolution of waiting time to selfing in hermaphrodites. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.1002475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
Although mixed mating systems involving both selfing and outcrossing are fairly common in hermaphrodites, the mechanisms maintaining mixed mating are still unknown in many cases. In some species, individuals that have not yet found a mating partner delay self-fertilization for some time. This “waiting time” to selfing (WT) can exhibit heritable variation between individuals and is subject to two opposing selection pressures: waiting longer increases the density-dependent probability to encounter a mate within that time and thereby the chance to avoid inbreeding depression (ID) in offspring, but also increases the risk of dying before reproduction. It has long been hypothesized that fluctuations in population density and thus mate availability can lead to stable intermediate WTs, but to our knowledge there are so far no quantitative models that also take into account the joint evolutionary dynamics of ID. We use an individual-based model and a mathematical approximation to explore how delayed selfing evolves in response to density and density fluctuations. We find that at high density, when individuals meet often, WT evolution is dominated by genetic drift; at intermediate densities, strong ID causes WT to increase; and at low densities, ID is purged and WT approaches zero. Positive feedback loops drive the system to either complete selfing or complete outcrossing. Fluctuating density can slow down convergence to these alternative stable states. However, mixed mating, in the sense of either a stable polymorphism in WT, or stable intermediate waiting times, was never observed. Thus, additional factors need to be explored to explain the persistence of delayed selfing.
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Vargas-Rivas AG, Barba-Macias E, Sánchez AJ, Castellanos-Morales G. Lack of mtDNA genetic diversity despite phenotypic variation and environmental heterogeneity in the exotic suckermouth armored catfish (Pterygoplichthys pardalis). Biol Invasions 2022. [DOI: 10.1007/s10530-022-02961-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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24
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Yang F, Crossley MS, Schrader L, Dubovskiy IM, Wei SJ, Zhang R. Polygenic adaptation contributes to the invasive success of the Colorado potato beetle. Mol Ecol 2022; 31:5568-5580. [PMID: 35984732 DOI: 10.1111/mec.16666] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 07/03/2022] [Accepted: 08/15/2022] [Indexed: 12/24/2022]
Abstract
How invasive species cope with novel selective pressures with limited genetic variation is a fundamental question in molecular ecology. Several mechanisms have been proposed, but they can lack generality. Here, we addressed an alternative solution, polygenic adaptation, wherein traits that arise from multiple combinations of loci may be less sensitive to loss of variation during invasion. We tested the polygenic signal of environmental adaptation of Colorado potato beetle (CPB) introduced in Eurasia. Population genomic analyses showed declining genetic diversity in the eastward expansion of Eurasian populations, and weak population genetic structure (except for the invasion fronts in Asia). Demographic history showed that all populations shared a strong bottleneck about 100 years ago when CPB was introduced to Europe. Genome scans revealed a suite of genes involved in activity regulation functions that are plausibly related to cold stress, including some well-founded functions (e.g., the activity of phosphodiesterase, the G-protein regulator) and discrete functions. Such polygenic architecture supports the hypothesis that polygenic adaptation and potentially genetic redundancy can fuel the adaptation of CPB despite strong genetic depletion, thus representing a promising general mechanism for resolving the genetic paradox of invasion. More broadly, most complex traits based on polygenes may be less sensitive to invasive bottlenecks, thus ensuring the evolutionary success of invasive species in novel environments.
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Affiliation(s)
- Fangyuan Yang
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.,Beijing Academy of Agriculture and Forestry Sciences, Institute of Plant and Environmental Protection, Beijing, China
| | - Michael S Crossley
- Department of Entomology and Wildlife Ecology, University of Delaware, Newark, Delaware, USA
| | - Lukas Schrader
- Institute for Evolution & Biodiversity, University of Münster, Münster, Germany
| | - Ivan M Dubovskiy
- Laboratory of Biological Plant Protection and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, Russia
| | - Shu-Jun Wei
- Beijing Academy of Agriculture and Forestry Sciences, Institute of Plant and Environmental Protection, Beijing, China
| | - Runzhi Zhang
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.,College of Life Science, University of Chinese Academy of Sciences, Beijing, China
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Introduced, Mixed, and Peripheral: Conservation of Mitochondrial-DNA Lineages in the Wild Boar (Sus scrofa L.) Population in the Urals. DIVERSITY 2022. [DOI: 10.3390/d14110916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Translocations and introductions are important events that allow organisms to overcome natural barriers. The genetic background of colonization success and genetic consequences of the establishment of populations in new environments are of great interest for predicting species’ colonization success. The wild boar has been introduced into many parts of the world. We analyzed sequences of the mitochondrial-DNA control region in the wild boars introduced into the Ural region and compared them with sequences from founder populations (from Europe, the Caucasus, Central Asia, and the Far East). We found that the introduced population has high genetic diversity. Haplotypes from all the major phylogenetic clades were detected in the analyzed group of the animals from the Urals. In this group, no haplotypes identical to Far Eastern sequences were detectable despite a large number of founders from that region. The contribution of lineages originating from Eastern Europe was greater than expected from the proportions (%) of European and Asian animals in the founder populations. This is the first study on the genetic diversity and structure of a wild boar population of mixed origin at the northern periphery of this species’ geographical range.
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Zhang S, Lin M, Liu J, Chen J, Liu D, Zhao J, Yao M. A centenary tale: population genetic insights into the introduction history of the oriental fire-bellied toad (Bombina orientalis) in Beijing. BMC Ecol Evol 2022; 22:117. [PMID: 36241967 PMCID: PMC9569074 DOI: 10.1186/s12862-022-02072-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 09/02/2022] [Indexed: 11/06/2022] Open
Abstract
Background The successful establishment of a species population following a single introduction of a few individuals to a non-native area has been limited. Nevertheless, the oriental fire-bellied toad (Bombina orientalis) population in Beijing is purportedly descended from a single introduction of about 200 individuals translocated from Yantai, Shandong Province, China, in 1927. Results To resolve the introduction process and to understand the genetic consequences since that introduction approximately 90 years ago, we investigated the population’s genetic diversity and structure using 261 toads from Beijing and two native Shandong populations and inferred the species’ introduction history using simulation-based approaches. Analysis of mitochondrial DNA (mtDNA) sequences showed the two haplotypes found in Beijing nested within Yantai haplotypes, thus corroborating the historical record of the translocation source. The mtDNA and 11 nuclear microsatellite markers revealed both considerably lower genetic diversity in Beijing than in the source population and strong genetic differentiation between them. Although the current census population in Beijing may be in the range of a few thousand, the effective population size was estimated at only 20–57. Simulations also suggest that this population may have descended from 40–60 founders. Conclusions The Beijing population’s genetic patterns were consistent with the consequences of a severe bottleneck during introduction followed by genetic drift. The introduction trajectory constructed for this B. orientalis population reveals the genetic footprints of a small population sustained in isolation for nearly a century. Our results provide an intriguing example of establishment success from limited founders and may inform ex situ conservation efforts as well as the management of biological invasions. Supplementary Information The online version contains supplementary material available at 10.1186/s12862-022-02072-z.
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Affiliation(s)
- Shan Zhang
- grid.11135.370000 0001 2256 9319School of Life Sciences, Peking University, R312, School of Life Sciences Bldg., 100871 Beijing, China ,grid.11135.370000 0001 2256 9319Institute of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing, 100871 China
| | - Meixi Lin
- grid.11135.370000 0001 2256 9319School of Life Sciences, Peking University, R312, School of Life Sciences Bldg., 100871 Beijing, China ,grid.19006.3e0000 0000 9632 6718Department of Ecology and Evolutionary Biology, University of California-Los Angeles, Los Angeles, CA 90095 USA
| | - Jiawei Liu
- grid.11135.370000 0001 2256 9319School of Life Sciences, Peking University, R312, School of Life Sciences Bldg., 100871 Beijing, China ,grid.170205.10000 0004 1936 7822Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637 USA
| | - Jiangce Chen
- grid.63054.340000 0001 0860 4915Mechanical Engineering Department, University of Connecticut, Storrs, CT 06269 USA
| | - Dong Liu
- grid.263817.90000 0004 1773 1790Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055 China
| | - Jindong Zhao
- grid.11135.370000 0001 2256 9319School of Life Sciences, Peking University, R312, School of Life Sciences Bldg., 100871 Beijing, China ,grid.11135.370000 0001 2256 9319Institute of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing, 100871 China
| | - Meng Yao
- grid.11135.370000 0001 2256 9319School of Life Sciences, Peking University, R312, School of Life Sciences Bldg., 100871 Beijing, China ,grid.11135.370000 0001 2256 9319Institute of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing, 100871 China
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<i>PHYSELLA ACUTA </i>(DRAPARNAUD, 1805) (MOLLUSCA: GASTROPODA: PHYSIDAE) IN THE ĐANHIM RIVER BASIN (LÂM ĐỒNG PROVINCE, VIETNAM): GENETIC AND MORPHOLOGICAL IDENTIFICATION. RUSSIAN JOURNAL OF BIOLOGICAL INVASIONS 2022. [DOI: 10.35885/1996-1499-15-3-38-51] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Invasive freshwater molluscs of the genus Physella (Gastropoda: Physidae) were discovered in the basin of the Dong Nai River, Vietnam for the first time. Based on the analysis of morphological features and the nucleotide sequence of the fragment of the COI mitochondrial gene, these molluscs were identified as belonging to the species Physella acuta (Draparnaud, 1805). The paper summarizes the available information on the distribution of this species in the waterbodies of Vietnam, provides the morphological characteristics of the studied individuals, and compares them with other populations of the species found in tropic and subtropic regions. It is shown that, despite the more than twenty-year history of registration of Physella acuta in Vietnam, the species remains relatively rare in the country's waterbodies. The presence in the studied sample of individuals of different size groups suggests that, in the basin of the Dong Nai River, self-reproducing population of Physella acuta has been established.
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Biedrzycka A, Fijarczyk A, Kloch A, Porth IM. Editorial: Genomic basis of adaptations to new environments in expansive and invasive species. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.974649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Kim J, Ubagan M, Kwon S, Kim IH, Shin S. Variation in genetics, morphology, and recruitment of the invasive barnacle Amphibalanus eburneus (Gould, 1841) in the southern Korean peninsula. PeerJ 2022; 10:e14002. [PMID: 36071826 PMCID: PMC9443810 DOI: 10.7717/peerj.14002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Accepted: 08/13/2022] [Indexed: 01/19/2023] Open
Abstract
The ivory barnacle Amphibalanus eburneus is a marine crustacean, which presents near-cosmopolitan distribution due to extensive introduction and exhibits a wide spectrum of phenotypic variation. To elucidate geographical differentiation among populations through invasion, we investigated variation in genetic structure, shell morphology, and recruitment pattern for A. eburneus, from the southern Korean Peninsula where it has been established since the late 1980s. We selected samples from four populations in corresponding ecologically-relevant regions representing all surrounding South Korean waters. From these we amplified the mitochondrial genetic marker cytochrome oxidase subunit I (COI) from 57 individuals and performed a populational genetic analyses with 11 additional GenBank sequences to evaluate population structure. To examine morphological variation, we applied two-dimensional landmark-based geometric morphometrics to the scutum and tergum for 148 and 151 individuals, respectively. Furthermore, we estimated the density of year-old individuals in the field to compare recruitment responses among localities. We detected 33 haplotypes among the four locations belonging to three distinct clades based on moderate intraspecific pairwise genetic distance (≥3.5%). The haplotypes in these clades were not locality-specific in their distribution. In contrast, we did detect interpopulation variation in opercular shape and morphospace structure, and one population could be separated from the rest based on its distinct tergum morphotype alone. This morphologically distinct population was also differentiated by displaying the lowest mean recruitment density. Our results indicate that although there is no relationship between molecular variation in the COI gene and geographic regions in South Korea, association with locality for operculum morphology, and recruitment response suggest ecological adaptation by this barnacle in a new habitat.
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Affiliation(s)
- Jeongho Kim
- Marine Biological Resources Institute, Sahmyook University, Seoul, South Korea
| | - Michael Ubagan
- Marine Biological Resources Institute, Sahmyook University, Seoul, South Korea,Department of Animal Biotechnology and Resource, College of Science and Technology, Sahmyook University, Seoul, South Korea
| | - Soyeon Kwon
- Department of Animal Biotechnology and Resource, College of Science and Technology, Sahmyook University, Seoul, South Korea
| | - Il-Hoi Kim
- Department of Biology, College of Natural Science, Gangneung-Wonju National University, Gangneung, South Korea
| | - Sook Shin
- Marine Biological Resources Institute, Sahmyook University, Seoul, South Korea,Department of Animal Biotechnology and Resource, College of Science and Technology, Sahmyook University, Seoul, South Korea
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The tails of two invasive species: genetic responses to acute and chronic bottlenecks. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02844-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
AbstractGenetic diversity can affect population viability and can be reduced by both acute and chronic mechanisms. Using the history of the establishment and management of two invasive rat species on Tetiaroa atoll, French Polynesia, we investigated the intensity and longevity of contrasting population bottleneck mechanisms on genetic diversity and bottleneck signal. Using microsatellite loci we show how both a chronic reduction over approximately 50 years of a Rattus exulans population caused by the arrival of its competitor R. rattus, and an acute reduction in a R. rattus population caused by a failed eradication approximately 10 years ago, caused similar magnitudes of genetic diversity loss. Furthermore, these strong bottleneck signals were in addition to the lasting signal from initial colonisation by each species many decades to centuries earlier, characterising a genetic paradox of biological invasion. These findings have implications for the study of population genetics of invasive species, and underscore how important historical context of population dynamics is when interpreting snapshots of genetic diversity.
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31
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Nydam ML, Stefaniak LM, Lambert G, Counts B, López-Legentil S. Dynamics of ascidian-invaded communities over time. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02852-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Nelufule T, Robertson MP, Wilson JRU, Faulkner KT. Native-alien populations—an apparent oxymoron that requires specific conservation attention. NEOBIOTA 2022. [DOI: 10.3897/neobiota.74.81671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Many countries define nativity at a country-level—taxa are categorised as either alien species or native species. However, there are often substantial within-country biogeographical barriers and so a taxon can be native and alien to different parts of the same country. Here, we use the term ‘native-alien populations’ as a short-hand for populations that result from the human-mediated dispersal of individuals of a species beyond a biogeographical barrier to a point beyond that species’ native range, but that is still within the same political entity as parts of the species’ native range. Based on these criteria, we consider native-alien populations to be biological invasions. However, we argue that, in comparison to other alien populations, native-alien populations: 1) are likely to be closer geographically to their native range; 2) are likely to be phylogenetically and ecologically more similar to native species in their introduced range; and 3) options to control their introduction or manage them will likely be more limited. We argue this means native-alien populations tend to differ from other alien populations in the likelihood of invasion, the types of impacts they have, and in how they can be most effectively managed. We also argue that native-alien populations are similarly a distinct phenomenon from native populations that are increasing in abundance or range extent. And note that native-alien populations are expected to be particularly common in large, ecologically diverse countries with disjunct biomes and ecoregions. Reporting, monitoring, regulating and managing native-alien populations will, we believe, become an increasingly important component of managing global change.
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Invasion success of a freshwater fish corresponds to low dissolved oxygen and diminished riparian integrity. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02827-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Li F, Liu X, Zhu J, Li J, Gao K, Zhao C. The Role of Genetic Factors in the Differential Invasion Success of Two Spartina Species in China. FRONTIERS IN PLANT SCIENCE 2022; 13:909429. [PMID: 35712568 PMCID: PMC9196123 DOI: 10.3389/fpls.2022.909429] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/02/2022] [Indexed: 06/15/2023]
Abstract
Biological invasions have become one of the greatest threats to global biodiversity and ecosystem conservation. Most previous studies have revealed how successful invasive species adapt to new environments and climate change through phenotypic and genetic evolution. Some researchers suggested that understanding unsuccessful or less successful biological invasions might be important for understanding the relationships between invasion adaptability and climate factors. We compared the sexual reproduction ability, genetic diversity, and gene × environment interaction in two intentionally introduced alien species in China (Spartina anglica and Spartina alterniflora) based on restriction site-associated DNA (RAD) sequencing. After more than 50 years, the distribution of S. alterniflora has rapidly expanded, while S. anglica has experienced extreme dieback. A total of 212,939 single nucleotide polymorphisms (SNPs) for the two Spartina species were used for analysis. The multilocus genotype (MLG) analysis revealed that clonal reproduction was the prevalent mode of reproduction in both species, indicating that a change in the mode of reproduction was not the key factor enabling successful invasion by Spartina. All genetic diversity indicators (He, Ho, π) in S. alterniflora populations were at least two times higher than those in S. anglica populations, respectively (p < 0.001). Furthermore, the population genetic structure and stronger patterns of climate-associated loci provided support for rapid adaptive evolution in the populations of S. alterniflora in China. Altogether, our results highlight the importance of genetic diversity and local adaptation, which were driven by multiple source populations, in increasing the invasiveness of S. alterniflora.
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Geburzi JC, Heuer N, Homberger L, Kabus J, Moesges Z, Ovenbeck K, Brandis D, Ewers C. An environmental gradient dominates ecological and genetic differentiation of marine invertebrates between the North and Baltic Sea. Ecol Evol 2022; 12:e8868. [PMID: 35600684 PMCID: PMC9121054 DOI: 10.1002/ece3.8868] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 04/07/2022] [Accepted: 04/08/2022] [Indexed: 12/14/2022] Open
Abstract
Environmental gradients have emerged as important barriers to structuring populations and species distributions. We set out to test whether the strong salinity gradient from the marine North Sea to the brackish Baltic Sea in northern Europe represents an ecological and genetic break, and to identify life history traits that correlate with the strength of this break. We accumulated mitochondrial cytochrome oxidase subunit 1 sequence data, and data on the distribution, salinity tolerance, and life history for 28 species belonging to the Cnidaria, Crustacea, Echinodermata, Mollusca, Polychaeta, and Gastrotricha. We included seven non‐native species covering a broad range of times since introduction, in order to gain insight into the pace of adaptation and differentiation. We calculated measures of genetic diversity and differentiation across the environmental gradient, coalescent times, and migration rates between North and Baltic Sea populations, and analyzed correlations between genetic and life history data. The majority of investigated species is either genetically differentiated and/or adapted to the lower salinity conditions of the Baltic Sea. Species exhibiting population structure have a range of patterns of genetic diversity in comparison with the North Sea, from lower in the Baltic Sea to higher in the Baltic Sea, or equally diverse in North and Baltic Sea. Two of the non‐native species showed signs of genetic differentiation, their times since introduction to the Baltic Sea being about 80 and >700 years, respectively. Our results indicate that the transition from North Sea to Baltic Sea represents a genetic and ecological break: The diversity of genetic patterns points toward independent trajectories in the Baltic compared with the North Sea, and ecological differences with regard to salinity tolerance are common. The North Sea–Baltic Sea region provides a unique setting to study evolutionary adaptation during colonization processes at different stages by jointly considering native and non‐native species.
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Affiliation(s)
- Jonas C. Geburzi
- Mangrove Ecology Leibniz Centre for Tropical Marine Research (ZMT) Bremen Germany
- Department of Organismic and Evolutionary Biology Museum of Comparative Zoology Harvard University Cambridge Massachusetts USA
- Zoological Museum Kiel University Kiel Germany
| | - Nele Heuer
- Zoological Museum Kiel University Kiel Germany
| | | | - Jana Kabus
- Zoological Museum Kiel University Kiel Germany
- Department Aquatic Ecotoxicology Institute of Ecology Diversity and Evolution Goethe University Frankfurt am Main Frankfurt am Main Germany
| | - Zoe Moesges
- Zoological Museum Kiel University Kiel Germany
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Brazier T, Cherif E, Martin JF, Gilles A, Blanchet S, Zhao Y, Combe M, McCairns RJS, Gozlan RE. The influence of native populations’ genetic history on the reconstruction of invasion routes: the case of a highly invasive aquatic species. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02787-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Zhai D, Li B, Xiong F, Jiang W, Liu H, Luo C, Duan X, Chen D. Population Genetics Reveals Invasion Origin of Coilia brachygnathus in the Three Gorges Reservoir of the Yangtze River, China. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.783215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Non-indigenous fish invasions have posed a serious threat to global fish diversity and aquatic ecosystem security. Studying the invasion sources, pathways, and genetic mechanisms by means of population genetics is helpful in the management and control of non-indigenous fishes. In this study, we used mitochondrial Cyt b gene, D-Loop region and microsatellite markers to analyze the genetic diversity and population structure of 12 Coilia brachygnathus populations from the native and invaded regions of the Yangtze River Basin in order to explore the invasion sources, pathways, and genetic mechanisms of C. brachygnathus in the Three Gorges Reservoir. The results showed that the main invasion sources of C. brachygnathus in the Three Gorges Reservoir were the Poyanghu Lake, Dongtinghu Lake, Changhu Lake, and other populations in the middle reaches of the Yangtze River. The invasion pathway may have involved moving upstream through the operation of ship locks. The genetic diversity of C. brachygnathus in the invasive populations was significantly smaller than in the native populations, indicating a founder effect. The low genetic diversity did not affect the successful invasion, confirming that genetic diversity and successful invasion do not always have a simple causal relationship. These results can provide basic data for the prevention and control of C. brachygnathus in the Three Gorges Reservoir and study case for understanding the mechanism of invasion genetics.
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Techer MA, Roberts JMK, Cartwright RA, Mikheyev AS. The first steps toward a global pandemic: Reconstructing the demographic history of parasite host switches in its native range. Mol Ecol 2022; 31:1358-1374. [PMID: 34882860 PMCID: PMC11105409 DOI: 10.1111/mec.16322] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 11/23/2021] [Accepted: 11/29/2021] [Indexed: 12/14/2022]
Abstract
Host switching allows parasites to expand their niches. However, successful switching may require suites of adaptations and also may decrease performance on the old host. As a result, reductions in gene flow accompany many host switches, driving speciation. Because host switches tend to be rapid, it is difficult to study them in real-time, and their demographic parameters remain poorly understood. As a result, fundamental factors that control subsequent parasite evolution, such as the size of the switching population or the extent of immigration from the original host, remain largely unknown. To shed light on the host switching process, we explored how host switches occur in independent host shifts by two ectoparasitic honey bee mites (Varroa destructor and V. jacobsoni). Both switched to the western honey bee (Apis mellifera) after being brought into contact with their ancestral host (Apis cerana), ~70 and ~12 years ago, respectively. Varroa destructor subsequently caused worldwide collapses of honey bee populations. Using whole-genome sequencing on 63 mites collected in their native ranges from both the ancestral and novel hosts, we were able to reconstruct the known temporal dynamics of the switch. We further found multiple previously undiscovered mitochondrial lineages on the novel host, along with the genetic equivalent of tens of individuals that were involved in the initial host switch. Despite being greatly reduced, some gene flow remains between mites adapted to different hosts. Our findings suggest that while reproductive isolation may facilitate the fixation of traits beneficial for exploiting the new host, ongoing genetic exchange may allow genetic amelioration of inbreeding effects.
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Affiliation(s)
- Maeva A Techer
- Okinawa Institute of Science and Technology, Okinawa, Japan
| | - John M K Roberts
- Commonwealth Scientific & Industrial Research Organisation, Canberra, Australian Capital Territory, Australia
| | - Reed A Cartwright
- The Biodesign Institute, Arizona State University, Tempe, Arizona, USA
- School of Life Sciences, Arizona State University, Tempe, Arizona, USA
| | - Alexander S Mikheyev
- Okinawa Institute of Science and Technology, Okinawa, Japan
- Australian National University, Canberra, Australian Capital Territory, Australia
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Azzurro E, Nourigat M, Cohn F, Ben Souissi J, Bernardi G. Right out of the gate: the genomics of Lessepsian invaders in the vicinity of the Suez Canal. Biol Invasions 2021. [DOI: 10.1007/s10530-021-02704-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
AbstractMarine organisms that enter the Mediterranean from the Red Sea via the Suez Canal are known as Lessepsian bioinvaders. In general, genetic studies of Lessepsian fishes have shown little structure between Red Sea and Mediterranean populations. Yet notable exceptions suggest the importance of life-history factors that may influence patterns of spatial genetic variation. In this study, by sampling two invasive fishes with different life histories (the rabbitfish Siganus rivulatus and the filefish Stephanolepis diaspros), we looked at evidence of population structure and selection at the boundary between the Red Sea and the Mediterranean (the Suez Canal), using thousands of molecular markers. Results illustrate two divergent patterns of genetic patterns, with little genetic structure in S. rivulatus and strong population structure in S. diaspros, even at such small spatial scale. We discuss differences in ecological characteristics between the two species to account for such differences. In addition, we report that in the face of both high (S. rivulatus) and low (S. diaspros) gene flow, loci under selection were uncovered, and some protein coding genes were identified as being involved with osmoregulation, which seems to be an important feature of individuals crossing the salinity-variable Suez Canal. The presence of genes under selection in populations near the Suez Canal supports the idea that selection may be active and essential for successful invasions right out of the gate.
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Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader. Proc Natl Acad Sci U S A 2021; 118:2116211118. [PMID: 34911766 PMCID: PMC8713979 DOI: 10.1073/pnas.2116211118] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/05/2021] [Indexed: 01/25/2023] Open
Abstract
Invasion rates have increased in the past 100 y irrespective of international conventions. What characterizes a successful invasion event? And how does genetic diversity translate into invasion success? Employing a whole-genome perspective using one of the most successful marine invasive species world-wide as a model, we resolve temporal invasion dynamics during independent invasion events in Eurasia. We reveal complex regionally independent invasion histories including cases of recurrent translocations, time-limited translocations, and stepping-stone range expansions with severe bottlenecks within the same species. Irrespective of these different invasion dynamics, which lead to contrasting patterns of genetic diversity, all nonindigenous populations are similarly successful. This illustrates that genetic diversity, per se, is not necessarily the driving force behind invasion success. Other factors such as propagule pressure and repeated introductions are an important contribution to facilitate successful invasions. This calls into question the dominant paradigm of the genetic paradox of invasions, i.e., the successful establishment of nonindigenous populations with low levels of genetic diversity.
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Heckwolf MJ, Morim T, Riccioli F, Baltazar-Soares M. Fresh start after rough rides: understanding patterns of genetic differentiation upon human-mediated translocations. Biol Invasions 2021. [DOI: 10.1007/s10530-021-02605-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Santa MA, Musiani M, Ruckstuhl KE, Massolo A. A review on invasions by parasites with complex life cycles: the European strain of Echinococcus multilocularis in North America as a model. Parasitology 2021; 148:1532-1544. [PMID: 35060461 PMCID: PMC8564803 DOI: 10.1017/s0031182021001426] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 07/14/2021] [Accepted: 07/30/2021] [Indexed: 12/28/2022]
Abstract
In a fast-changing and globalized world, parasites are moved across continents at an increasing pace. Co-invasion of parasites and their hosts is leading to the emergence of infectious diseases at a global scale, underlining the need for integration of biological invasions and disease ecology research. In this review, the ecological and evolutionary factors influencing the invasion process of parasites with complex life cycles were analysed, using the invasion of the European strain of Echinococcus multilocularis in North America as a model. The aim was to propose an ecological framework for investigating the invasion of parasites that are trophically transmitted through predator–prey interactions, showing how despite the complexity of the cycles and the interactions among multiple hosts, such parasites can overcome multiple barriers and become invasive. Identifying the key ecological processes affecting the success of parasite invasions is an important step for risk assessment and development of management strategies, particularly for parasites with the potential to infect people (i.e. zoonotic).
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Affiliation(s)
- Maria A. Santa
- Department of Biology, University of Calgary, AlbertaT2N 1N4, Canada
| | - Marco Musiani
- Department of Biology, University of Calgary, AlbertaT2N 1N4, Canada
| | | | - Alessandro Massolo
- Department of Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, AlbertaT2N 4Z6, Canada
- Ethology Unit, Department of Biology, University of Pisa, Pisa, 56126, Italy
- UMR CNRS 6249 Chrono-Environnement, Université Bourgogne Franche-Comté, Besançon, 25030, France
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Urquía D, Gutierrez B, Pozo G, Pozo MJ, Torres MDL. Origin and dispersion pathways of guava in the Galapagos Islands inferred through genetics and historical records. Ecol Evol 2021; 11:15111-15131. [PMID: 34765164 PMCID: PMC8571588 DOI: 10.1002/ece3.8193] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 07/07/2021] [Accepted: 09/16/2021] [Indexed: 11/23/2022] Open
Abstract
Guava (Psidium guajava) is an aggressive invasive plant in the Galapagos Islands. Determining its provenance and genetic diversity could explain its adaptability and spread, and how this relates to past human activities. With this purpose, we analyzed 11 SSR markers in guava individuals from Isabela, Santa Cruz, San Cristobal, and Floreana islands in the Galapagos, as well as from mainland Ecuador. The mainland guava population appeared genetically differentiated from the Galapagos populations, with higher genetic diversity levels found in the former. We consistently found that the Central Highlands region of mainland Ecuador is one of the most likely origins of the Galapagos populations. Moreover, the guavas from Isabela and Floreana show a potential genetic input from southern mainland Ecuador, while the population from San Cristobal would be linked to the coastal mainland regions. Interestingly, the proposed origins for the Galapagos guava coincide with the first human settlings of the archipelago. Through approximate Bayesian computation, we propose a model where San Cristobal was the first island to be colonized by guava from the mainland, and then, it would have spread to Floreana and finally to Santa Cruz; Isabela would have been seeded from Floreana. An independent trajectory could also have contributed to the invasion of Floreana and Isabela. The pathway shown in our model agrees with the human colonization history of the different islands in the Galapagos. Our model, in conjunction with the clustering patterns of the individuals (based on genetic distances), suggests that guava introduction history in the Galapagos archipelago was driven by either a single event or a series of introduction events in rapid succession. We thus show that genetic analyses supported by historical sources can be used to track the arrival and spread of invasive species in novel habitats and the potential role of human activities in such processes.
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Affiliation(s)
- Diego Urquía
- Laboratorio de Biotecnología VegetalUniversidad San Francisco de Quito (USFQ)QuitoEcuador
| | - Bernardo Gutierrez
- Laboratorio de Biotecnología VegetalUniversidad San Francisco de Quito (USFQ)QuitoEcuador
- Department of ZoologyUniversity of OxfordOxfordUK
| | - Gabriela Pozo
- Laboratorio de Biotecnología VegetalUniversidad San Francisco de Quito (USFQ)QuitoEcuador
| | - Maria Jose Pozo
- Laboratorio de Biotecnología VegetalUniversidad San Francisco de Quito (USFQ)QuitoEcuador
| | - Maria de Lourdes Torres
- Laboratorio de Biotecnología VegetalUniversidad San Francisco de Quito (USFQ)QuitoEcuador
- Galapagos Science CenterUniversidad San Francisco de Quito and University of North Carolina at Chapel HillGalapagosEcuador
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Lemmen KD, Verhoeven KJF, Declerck SAJ. Experimental evidence of rapid heritable adaptation in the absence of initial standing genetic variation. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13943] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kimberley D. Lemmen
- Department of Aquatic Ecology Netherlands Institute of Ecology (NIOO‐KNAW) Wageningen The Netherlands
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
| | - Koen J. F. Verhoeven
- Department of Terrestrial Ecology Netherlands Institute of Ecology (NIOO‐KNAW) Wageningen The Netherlands
| | - Steven A. J. Declerck
- Department of Aquatic Ecology Netherlands Institute of Ecology (NIOO‐KNAW) Wageningen The Netherlands
- Department of Biology Laboratory of Aquatic Ecology, Evolution and Conservation KULeuven Leuven Belgium
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Sofi IA, Rashid I, Lone JY, Tyagi S, Reshi ZA, Mir RR. Genetic diversity may help evolutionary rescue in a clonal endemic plant species of Western Himalaya. Sci Rep 2021; 11:19595. [PMID: 34599214 PMCID: PMC8486807 DOI: 10.1038/s41598-021-98648-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Accepted: 08/25/2021] [Indexed: 02/08/2023] Open
Abstract
Habitat loss due to climate change may cause the extinction of the clonal species with a limited distribution range. Thus, determining the genetic diversity required for adaptability by these species in sensitive ecosystems can help infer the chances of their survival and spread in changing climate. We studied the genetic diversity and population structure of Sambucus wightiana-a clonal endemic plant species of the Himalayan region for understanding its possible survival chances in anticipated climate change. Eight polymorphic microsatellite markers were used to study the allelic/genetic diversity and population structure. In addition, ITS1-ITS4 Sanger sequencing was used for phylogeny and SNP detection. A total number of 73 alleles were scored for 37 genotypes at 17 loci for 8 SSRs markers. The population structural analysis using the SSR marker data led to identifying two sub-populations in our collection of 37 S. wightiana genotypes, with 11 genotypes having mixed ancestry. The ITS sequence data show a specific allele in higher frequency in a particular sub-population, indicating variation in different S. wightiana accessions at the sequence level. The genotypic data of SSR markers and trait data of 11 traits of S. wightiana, when analyzed together, revealed five significant Marker-Trait Associations (MTAs) through Single Marker Analysis (SMA) or regression analysis. Most of the SSR markers were found to be associated with more than one trait, indicating the usefulness of these markers for working out marker-trait associations. Moderate to high genetic diversity observed in the present study may provide insurance against climate change to S. wightiana and help its further spread.
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Affiliation(s)
- Irshad Ahmad Sofi
- grid.412997.00000 0001 2294 5433Department of Botany, University of Kashmir, Srinagar, Jammu and Kashmir 190006 India
| | - Irfan Rashid
- grid.412997.00000 0001 2294 5433Department of Botany, University of Kashmir, Srinagar, Jammu and Kashmir 190006 India
| | - Javaid Yousuf Lone
- grid.412997.00000 0001 2294 5433Department of Botany, University of Kashmir, Srinagar, Jammu and Kashmir 190006 India
| | - Sandhya Tyagi
- grid.418196.30000 0001 2172 0814Department of Plant Physiology, Indian Agricultural Research Institute, New Delhi, Delhi 110012 India
| | - Zafar A. Reshi
- grid.412997.00000 0001 2294 5433Department of Botany, University of Kashmir, Srinagar, Jammu and Kashmir 190006 India
| | - Reyazul Rouf Mir
- grid.444725.40000 0004 0500 6225Division of Genetics and Plant Breeding, Faculty of Agriculture, SKUAST-Kashmir, Wadura Campus, Sopore, Jammu and Kashmir 193201 India
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Liu X, Wei S, Du Z, He J, Zhang X, Li H, Zhang R, Cai W. Population Genetic Structure of the Invasive Spotted Alfalfa Aphid Therioaphis trifolii (Hemiptera: Aphididae) in China Inferred From Complete Mitochondrial Genomes. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.759496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Biological invasions represent a natural rapid evolutionary process in which invasive species may present a major threat to biodiversity and ecosystem integrity. Analyzing the genetic structure and demographic history of invaded populations is critical for the effective management of invasive species. The spotted alfalfa aphid (SAA) Therioaphis trifolii is indigenous in the Mediterranean region of Europe and Africa and has invaded China, causing severe damages to the alfalfa industry. However, little is known about its genetic structure and invasion history. In this study, we obtained 167 complete mitochondrial genome sequences from 23 SAA populations across China based on high-throughput sequencing and performed population genetic and phylogenomic analyses. High haplotype diversity and low nucleotide diversity were found in SAA populations in China with distinct genetic structures, i.e., all populations diverged into three phylogenetic lineages. Demographic history analyses showed a recent expansion of the SAA population, consistent with the recent invasion history. Our study indicated that SAA may have invaded through multiple introduction events during commercial trades of alfalfa, although this needs further validation by nuclear markers.
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Genome-Wide SNP Analysis Reveals Multiple Paternity in Burmese Pythons Invasive to the Greater Florida Everglades. J HERPETOL 2021. [DOI: 10.1670/20-104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Tepolt CK, Grosholz ED, de Rivera CE, Ruiz GM. Balanced polymorphism fuels rapid selection in an invasive crab despite high gene flow and low genetic diversity. Mol Ecol 2021; 31:55-69. [PMID: 34431151 DOI: 10.1111/mec.16143] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 05/24/2021] [Accepted: 08/13/2021] [Indexed: 12/30/2022]
Abstract
Adaptation across environmental gradients has been demonstrated in numerous systems with extensive dispersal, despite high gene flow and consequently low genetic structure. The speed and mechanisms by which such adaptation occurs remain poorly resolved, but are critical to understanding species spread and persistence in a changing world. Here, we investigate these mechanisms in the European green crab Carcinus maenas, a globally distributed invader. We focus on a northwestern Pacific population that spread across >12 degrees of latitude in 10 years from a single source, following its introduction <35 years ago. Using six locations spanning >1500 km, we examine genetic structure using 9376 single nucleotide polymorphisms (SNPs). We find high connectivity among five locations, with significant structure between these locations and an enclosed lagoon with limited connectivity to the coast. Among the five highly connected locations, the only structure observed was a cline driven by a handful of SNPs strongly associated with latitude and winter temperature. These SNPs are almost exclusively found in a large cluster of genes in strong linkage disequilibrium that was previously identified as a candidate for cold tolerance adaptation in this species. This region may represent a balanced polymorphism that evolved to promote rapid adaptation in variable environments despite high gene flow, and which now contributes to successful invasion and spread in a novel environment. This research suggests an answer to the paradox of genetically depauperate yet successful invaders: populations may be able to adapt via a few variants of large effect despite low overall diversity.
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Affiliation(s)
- Carolyn K Tepolt
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Edwin D Grosholz
- Department of Environmental Science and Policy, University of California, Davis, California, USA
| | - Catherine E de Rivera
- Department of Environmental Science and Management, Portland State University, Portland, Oregon, USA
| | - Gregory M Ruiz
- Smithsonian Environmental Research Center, Smithsonian Institution, Edgewater, Maryland, USA
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Vicente S, Máguas C, Richardson DM, Trindade H, Wilson JRU, Le Roux JJ. Highly diverse and highly successful: invasive Australian acacias have not experienced genetic bottlenecks globally. ANNALS OF BOTANY 2021; 128:149-157. [PMID: 33876193 PMCID: PMC8324033 DOI: 10.1093/aob/mcab053] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 04/15/2021] [Indexed: 05/04/2023]
Abstract
BACKGROUND AND AIMS Invasive species may undergo rapid evolution despite very limited standing genetic diversity. This so-called genetic paradox of biological invasions assumes that an invasive species has experienced (and survived) a genetic bottleneck and then underwent local adaptation in the new range. In this study, we test how often Australian acacias (genus Acacia), one of the world's most problematic invasive tree groups, have experienced genetic bottlenecks and inbreeding. METHODS We collated genetic data from 51 different genetic studies on Acacia species to compare genetic diversity between native and invasive populations. These studies analysed 37 different Acacia species, with genetic data from the invasive ranges of 11 species, and data from the native range for 36 species (14 of these 36 species are known to be invasive somewhere in the world, and the other 22 are not known to be invasive). KEY RESULTS Levels of genetic diversity are similar in native and invasive populations, and there is little evidence of invasive populations being extensively inbred. Levels of genetic diversity in native range populations also did not differ significantly between species that have and that do not have invasive populations. CONCLUSION We attribute our findings to the impressive movement, introduction effort and human usage of Australian acacias around the world.
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Affiliation(s)
- Sara Vicente
- Centro de Estudos do Ambiente e do Mar (CESAM), Faculdade de Ciências da Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências da Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
| | - Cristina Máguas
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências da Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - David M Richardson
- Centre for Invasion Biology, Department of Botany & Zoology, Stellenbosch University, Stellenbosch, South Africa
| | - Helena Trindade
- Centro de Estudos do Ambiente e do Mar (CESAM), Faculdade de Ciências da Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - John R U Wilson
- Centre for Invasion Biology, Department of Botany & Zoology, Stellenbosch University, Stellenbosch, South Africa
- South African National Biodiversity Institute, Kirstenbosch Research Centre, Cape Town, South Africa
| | - Johannes J Le Roux
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
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