Carbonaceous Nanomaterials Have Higher Effects on Soybean Rhizosphere Prokaryotic Communities During the Reproductive Growth Phase than During Vegetative Growth

Microplastic accumulation and oxidative stress in sweet pepper (Capsicum annuum Linn.): Role of the size effect

Microplastics (MPs), which are widely dispersed in terrestrial environments, threaten crop growth and human food security. However, plant accumulation and phytotoxicity related to the size effects of MPs remain insufficiently explored. This study investigated the accumulation and toxicity of two sizes of MPs on Capsicum annuum Linn. (C. annuum) through fluorescence tracing and antioxidant defense system assessment. The results revealed that the size of MPs significantly impacts their accumulation characteristics in C. annuum roots, leading to variations in toxic mechanisms, including oxidative stress and damage. Smaller MPs and higher exposure concentrations result in more pronounced growth inhibition. C. annuum roots have a critical size threshold for the absorption of MPs of approximately 1.2 μm. MPs that enter the root tissue exhibit an aggregated form, with smaller-sized MPs displaying a greater degree of aggregation. MP exposure induces oxidative stress in root tissues, with high concentrations of smaller MPs causing lipid peroxidation. Analysis of the IBR values revealed that C. annuum roots utilize ascorbic acid (ASA) to prevent oxidative damage caused by larger MPs. Conversely, smaller MPs primarily induce superoxide dismutase (SOD) and glutathione (GSH). These results emphasize the significant impact of MP size on plant antioxidant defense response mechanisms, laying the foundation for further investigating the implications for human health.

Effects of Graphene-Based Nanomaterials on Microorganisms and Soil Microbial Communities

The past decades have witnessed intensive research on the biological effects of graphene-based nanomaterials (GBNs) and the application of GBNs in different fields. The published literature shows that GBNs exhibit inhibitory effects on almost all microorganisms under pure culture conditions, and that this inhibitory effect is influenced by the microbial species, the GBN's physicochemical properties, the GBN's concentration, treatment time, and experimental surroundings. In addition, microorganisms exist in the soil in the form of microbial communities. Considering the complex interactions between different soil components, different microbial communities, and GBNs in the soil environment, the effects of GBNs on soil microbial communities are undoubtedly intertwined. Since bacteria and fungi are major players in terrestrial biogeochemistry, this review focuses on the antibacterial and antifungal performance of GBNs, their antimicrobial mechanisms and influencing factors, as well as the impact of this effect on soil microbial communities. This review will provide a better understanding of the effects of GBNs on microorganisms at both the individual and population scales, thus providing an ecologically safe reference for the release of GBNs to different soil environments.

Polyethylene microplastic-induced microbial shifts affected greenhouse gas emissions during litter decomposition in coastal wetland sediments

Microplastic contamination has become increasingly aggravated in coastal environments, further affecting biogeochemical processes involved with microbial community shifts. As a key biogeochemical process mainly driven by microbiota in coastal wetland sediments, litter decomposition contributes greatly to the global greenhouse gas (GHG) budget. However, under microplastic pollution, the relationship between microbial alterations and GHG emissions during litter decomposition in coastal wetlands remains largely unknown. Here, we explored the microbial mechanism by which polyethylene microplastic (PE-MP) influenced greenhouse gas (i.e., CH4, CO2 and N2O) emissions during litter decomposition in coastal sediments through a 75-day microcosm experiment. During litter decomposition, PE-MP exposure significantly decreased cumulative CH4 and CO2 emissions by 41.07% and 25.79%, respectively. However, there was no significant change in cumulative N2O emissions under PE-MP exposure. The bacterial, archaeal, and fungal communities in sediments exhibited varied responses to PE-MP exposure over time, as reflected by the altered structure and changed functional groups of the microbiota. The altered microbial functional groups ascribed to PE-MP exposure and sediment property changes might contribute to suppressing CH4 and CO2 emissions during litter decomposition. This study yielded valuable information regarding the effects of PE-MP on GHG emissions during litter decomposition in coastal wetland sediments.

Differences in greenhouse gas emissions and microbial communities between underground and conventionally constructed wastewater treatment plants

Large quantities of greenhouse gases (GHGs) are emitted into the atmosphere during wastewater treatment. In this study, GHG and microbial samples were collected from four wastewater treatment plants (WWTPs), and their differences and relationships were assessed. The study showed that, compared with conventionally constructed WWTPs, well-established gas collection systems in underground WWTPs facilitate comprehensive collection and accurate accounting of GHGs. In aboveground WWTPs, capped anoxic ponds promote methane production releasing it at 2-8 times the rate of uncapped emissions, in contrast to nitrous oxide emissions. Moreover, a stable subsurface environment allows for smaller fluctuations in daily GHG emissions and higher microbial diversity and abundance. This study highlights differences in GHG emission fluxes and microbial communities in differently constructed WWTPs, which are useful for control and accurate accounting of GHG emissions.

Microplastics affect soybean rhizosphere microbial composition and function during vegetative and reproductive stages

Microplastics (MPs) are emerging contaminants in agricultural soil, whereas their effects on the rhizosphere microbial ecosystems and biogeochemical nitrogen cycles during plant growth remain unknown. Here, a 70-day greenhouse experiment was carried out with black and fluvo-aquic soil to evaluate the influence of polyamide (PA), polyethylene (PE), polyester (PES), and polyvinyl chloride (PVC) MPs on the bacterial communities and functions in the soybean rhizosphere. The PA treatment consistently affected the rhizobacterial alpha diversity in the fluvo-aquic soil at soybean vegetative and reproductive growth stages, whereas the PE, PES, and PVC treatments had a short-term effect on the bacterial alpha diversity. At two growth stages, 6 and 23 biomarkers were consistently abundant in the PA treatment in the black soil and fluvo-aquic soil, respectively, and order Rhizobiales was found to be a biomarker for PA MPs contamination in both soils. Additionally, PA treatment decreased bacterial network complexity and tightness, whereas the effects of the PE, PES, and PVC on bacterial co-occurrence patterns varied depending on the soil types. Furthermore, PES and PVC treatments inhibited ammonification processes in the soybean rhizosphere, and PE could temporarily inhibit ammonia oxidation and denitrification processes according to the variations of N-cycling gene abundances. These effects on soil N-cycling also varied with soil types and soybean growth stages. This study provides profound information for understanding of MPs residues on the assembly of the soybean rhizosphere communities and function during plant development.

Soybean rhizosphere microorganisms alleviate Mo nanomaterials induced stress by improving soil microbial community structure

With the wide application of nanomaterials (NMs) in agriculture, it is particularly important to assess the impact of these NMs on soil microorganisms. In this study, different varieties of soybean rhizosphere microorganisms (RM) were employed to simulate the alleviate effect of molybdenum nanoparticles (Mo NPs) induced stress in presence of soybean plants. Mo NPs caused serious toxic effects on soybean growth and nitrogen fixation at a concentration of 100 mg kg^-1: plant height and biomass were reduced by 56.4% and 82.8%, respectively, and the ability to fix nitrogen was almostly lost. However, after adding different varieties of soybean RM (RM-Williams 82, RM-Youchun 1204, and RM-Zhongdou 41), the stress caused by high concentrations of Mo NPs on soybean plants was significantly reduced. The plant height, root length, biomass, and nitrogen fixation ability were improved by 70.8%, 80.7%, 145.8%, and 349.8%, respectively, following the addition of soybean RM-Williams 82. High-throughput sequencing revealed that Mo NPs treatment affected the microbial community structure. Among them, Flavisolibacter and Caulobacter genera abundance increased significantly, which might be the key factor in relieving Mo NPs-induced stress on soybean growth. These findings suggest a novel mode of RM as a promising strategy to prevent deleterious effects of stress with NPs on plants in the future.

Effects of individual and combined polystyrene nanoplastics and phenanthrene on the enzymology, physiology, and transcriptome parameters of rice (Oryza sativa L.)

Owing to their wide distribution, easy production, and resistance to degradation, microplastics (MPs) represent a globally emerging group of pollutants of concern. Furthermore, their decomposition can result in the generation of nanoplastics (NPs), which cause further environmental issues. Currently, the impact of the combination of these plastics with other organic pollutants on crop growth remains poorly investigated. In this study, a hydroponic experiment was conducted for seven days to evaluate the effects of 50 nm, 50 mg/L polystyrene (PS), and 1 mg/L phenanthrene (Phe) on the growth of rice plants. The results revealed that both Phe and PS inhibited growth and improved the antioxidant potential of rice. Relative to Phe alone, exposure to a combination of PS and Phe reduced Phe accumulation in the roots and shoots by 67.73% and 36.84%, respectively, and decreased the pressure on the antioxidant system. Exposure to Phe alone destroyed the photosynthetic system of rice plant leaves, whereas a combination of PS and Phe alleviated this damage. Gene Ontology (GO) analysis of the rice transcriptomes revealed that detoxification genes and phenylalanine metabolism were suppressed under exposure to Phe, which consequently diminished the antioxidant capacity and polysaccharide synthesis in rice plants. Kyoto Encyclopaedia of Genes and Genomes (KEGG) transcriptome analysis revealed that the combined presence of both PS and Phe improved photosynthesis and energy metabolism and alleviated the toxic effects of Phe by altering the carbon fixation pathway and hormone signal transduction in rice plants. The combination of PS and Phe also prevented Phe-associated damage to rice growth. These findings improve our understanding of the effects of MP/NPs and polycyclic aromatic hydrocarbons on crops.

Enhanced remediation of PAHs-contaminated site soil by bioaugmentation with graphene oxide immobilized bacterial pellets

Bioaugmentation is considered as a promising technology for cleanup of polycyclic aromatic hydrocarbons (PAHs) from contaminated site soil, however, available high-efficiency microbial agents remain very limited. Herein, we explored graphene oxide (GO)-immobilized bacterial pellets (JGOLB) by embedding high-efficiency degrading bacteria Paracoccus aminovorans HPD-2 in alginate-GO-Luria-Bertani medium (LB) composites. Microcosm culture experiments were performed with contaminated site soil to assess the effect of JGOLB on the removal of PAHs. The results showed that JGOLB exhibited greatly improved mechanical strength, larger specific surface area and more enriched mesopores, compared with traditional immobilized bacterial pellets. They significantly increased the removal rate of PAHs by 18.51% compared with traditional bacterial pellets, reaching the removal rate at 62.86% over 35 days of incubation. Moreover, the increase mainly focused on high-molecular-weight PAHs. JGOLB not only greatly increased the abundance of embedded degrading bacteria in soil, but also significantly enhanced the enrichment of potential indigenous degrading bacteria (Pseudarthrobacter and Arthrobacter), the functional genes involved in PAHs degradation and a number of ATP transport genes in the soil. Overall, such nanocomposite bacterial pellets provide a novel microbial immobilization option for remediating organic pollutants in harsh soil environment.

Impacts of typical engineering nanomaterials on the response of rhizobacteria communities and rice (Oryza sativa L.) growths in waterlogged antimony-contaminated soils

The combined eco-risks of Sb (widely presented in soils, especially nearing mining areas) and the engineering nanomaterials (ENMs) (applied in agriculture and soil remediation) still remain uncovered. The current study investigated the impacts of single and combined exposure of CuO, CeO₂ nanoparticles (NPs) and multi-walled carbon nanotube (MWCNTs) with Sb on rice growths and rhizosphere bacterial communities. The results showed that co-exposure of CuO NPs (0.075 wt%) with Sb (III) posed the most adverse impacts on root biomass and branches (up to 66.59% and 70.00% compared to other treatments, respectively). Treatments containing MWCNTs showed insignificant dose-dependent effects, while CeO₂ NPs combined with Sb (III) showed significant synergistic stimulating effects on the fresh weights of root and shoot, by 68.30% and 73.48% (p < 0.05) compared to single Sb exposure, respectively. The rice planting increased the percentage of non-specifically sorbed Sb in soils by 1.50-14.49 than the no-planting stage. Analysis on microbial communities revealed that co-exposure of CuO NPs with Sb (III) induced the greatest adverse impacts on rhizobacteria abundances and community structures at both phylum and genus levels. Therein, significant decrease of Bacteroidetes, Acidobacteria and increase of Firmicutes abundance at the phylum level were observed. This study provided information about the risks of different ENMs released to Sb-contaminated soils under flooded condition on both crops and bacterial communities.

When nanoparticle and microbes meet: The effect of multi-walled carbon nanotubes on microbial community and nutrient cycling in hyperaccumulator system

Carbon nanotubes can potentially stimulate phytoremediation of heavy metal contaminated soil by promoting plant biomass and root growth. Yet, the regulating mechanism of carbon nanotubes on the rhizosphere microenvironment and their potential ecological risks remain poorly characterized. The purpose of this study was to systematically evaluate the effects of multi-walled carbon nanotubes (MCNT) on the diversity and structure of rhizosphere soil bacterial and fungal communities, as well as soil enzyme activities and nutrients, in Solanum nigrum L. (S. nigrum)-soil system. Here, S. nigrum were cultivated in heavy metal(loid)s contaminated soils applied with MCNT (100, 500, and 1000 mg kg^-1 by concentration, none MCNT addition as control) for 60 days. Our results demonstrated more significant urease, sucrase, and acid phosphatase activities in MCNT than in control soils, which benefit to promoting plant growth. Also, there were significant reductions in available nitrogen and available potassium contents with the treatment of MCNT, while the organic carbon and available phosphorus were not affected by MCNT application. Notably, the alpha diversity of bacterial and fungal communities in the MCNT treatments did not significantly vary relative to control. However, the soil microbial taxonomic compositions were changed under the application of MCNT. Compared to the control, MCNT application increased the relative abundances of the Micrococcaceae family, Solirubrobacteraceae family, and Conexibacter genus, which were positively correlated with plant growth. In addition, the non-metric multidimensional scaling (NMDS) analysis revealed that the community structure of bacterial and fungal communities did not significantly change among all the treatments, and bacterial community structure was significantly correlated with soil organic carbon. At the same time, sucrase activity had the highest relation to fungal community structure. This study highlighted soil microbes have strong resistance and adaptation ability to carbon nanotubes with existence of plants, and revealed linkage between the rhizosphere microenvironment and plant growth, which well improved our understanding of carbon nanotubes in heavy metal phytoremediation.

Evaluation of the cadmium phytoextraction potential of tobacco (Nicotiana tabacum) and rhizosphere micro-characteristics under different cadmium levels

In this study, a field-scale and pot experiment were performed to evaluate the remedial efficiency of Cd contaminated soil by tobacco and explore rhizosphere micro-characteristics under different cadmium levels, respectively. The results indicated that tobacco could remove 12.9 % of Cd from soil within a short growing period of 80 d. The pot experiment revealed that tobacco could tolerate soil Cd concentrations up to 5.8 mg kg-1 and bioaccumulate 68.1 and 40.8 mg kg-1 Cd in shoots and roots, respectively. The high Cd bioaccumulation in tobacco might be attributed to strong acidification in the rhizosphere soil and the increase in Cd bioavailability. Rhizobacteria did not appear to be involved in Cd mobilization. In contrast, tobacco tended to enrich sulfate-reducing bacteria (such as Desulfarculaceae) under high Cd treatment (5.8 mg kg-1) but enrich plant growth-promoting bacteria (such as Bacillus, Dyadobacter, Virgibacillus and Lysobacter) to improve growth under low Cd treatment (0.2 mg kg-1), suggesting that tobacco employed different microbes for responding to Cd stress. Our results demonstrate the advantages of using tobacco for bioremediating Cd contaminated soil and clarify the rhizosphere mechanisms underlying Cd mobilization and tolerance.

Effects of nanofertilizers on soil and plant-associated microbial communities: Emerging trends and perspectives

Modern agricultural practices are relying excessively upon the use of synthetic fertilizers to supply essential nutrients to promote crop productivity. Though useful in the short term, their prolonged and persistent applications are harmful to soil fertility and nutrient dynamics of the rhizospheric microbiome. The application of nanotechnology in form of nanofertilizer provides an innovative, efficient, and eco-friendly alternative to synthetic fertilizers. The nanofertilizers allow a slow and sustained release of nutrients that not only supports plant growth but also conserve the diversity of the beneficial microbiome. Such attributes may help the phytomicrobiome to efficiently mitigate both biotic and abiotic stress conditions. Unfortunately, despite, exceptional efficiency and ease of applications, certain limitations are also associated with the nanofertilizers such as their complicated production process, tenuous transport and dosage-sensitive efficiency. These bottlenecks are causing a delay in the large-scale applications of nanofertilizers in agriculture. This review aims to highlight the current trends and perspectives on the use of nanofertilizers for improving soil fertility with a special focus on their effects on beneficial phyromicrobiome.

Nano-La2O3 Induces Honeybee (Apis mellifera) Death and Enriches for Pathogens in Honeybee Gut Bacterial Communities

Honeybees (Apis mellifera) can be exposed via numerous potential pathways to ambient nanoparticles (NPs), including rare earth oxide (REO) NPs that are increasingly used and released into the environment. Gut microorganisms are pivotal in mediating honeybee health, but how REO NPs may affect honeybee health and gut microbiota remains poorly understood. To address this knowledge gap, honeybees were fed pollen and sucrose syrup containing 0, 1, 10, 100, and 1000mgkg-1 of nano-La2O3 for 12days. Nano-La2O3 exerted detrimental effects on honeybee physiology, as reflected by dose-dependent adverse effects of nano-La2O3 on survival, pollen consumption, and body weight (p<0.05). Nano-La2O3 caused the dysbiosis of honeybee gut bacterial communities, as evidenced by the change of gut bacterial community composition, the enrichment of pathogenic Serratia and Frischella, and the alteration of digestion-related taxa Bombella (p<0.05). There were significant correlations between honeybee physiological parameters and the relative abundances of pathogenic Serratia and Frischella (p<0.05), underscoring linkages between honeybee health and gut bacterial communities. Taken together, this study demonstrates that nano-La2O3 can cause detrimental effects on honeybee health, potentially by disordering gut bacterial communities. This study thus reveals a previously overlooked effect of nano-La2O3 on the ecologically and economically important honeybee species Apis mellifera.

Evaluating the metabolic functional profiles of the microbial community and alfalfa (Medicago sativa) traits affected by the presence of carbon nanotubes and antimony in drained and waterlogged sediments

Antimony (Sb) is the ubiquitous re-emerging contaminant greatly accumulated in sediments which has been revealed risky to ecological environment. However, the impacts of Sb (III/V) on microbes and plants in sediments, under different water management with presence of engineering materials are poorly understood. This study conducted sequential incubation of sediments (flooding, draining and planting) with presence of multiwall carbon nanotubes (MWCNTs) and Sb to explore the influence on microbial functional diversity, Sb accumulation and alfalfa traits. Results showed that water management and planting led to greater impacts of sediment enzyme activities and microbial community metabolic function and bioavailable Sb fractions (defined as sum of acid-soluble fraction and reducible fraction, F1 + F2). Available fractions of Sb (V) showed higher correlation to microbial metabolism (r = 0.933) than that of Sb (III) (r = -0.480) in planting stage. MWCNTs with increasing concentrations (0.011%, w/w) positively correlated to microbial community metabolic function in planting stage whereas resulted in decreasing of Sb (III/V) concentrations in alfalfa, although 0.01% MWCNT led to increase of Sb (V) and decrease of Sb (V) by 50.97% and 32.68% respectively. This study provided information for investigating combined ecological impacts of heavy metal and engineering materials under different water managing sediments.

Enrichment of potential degrading bacteria accelerates removal of tetracyclines and their epimers from cow manure biochar amended soil

The excessive usage of tetracyclines in animal husbandry and aquaculture invariably leads to deterioration of the microbial quality of nearby soils. We previously reported the accelerated removal of tetracyclines and their intermediates from the cow manure biochar amended soil (CMB). However, little is known about the underlying changes in the microbial community that mediate the accelerated removal of tetracyclines from the CMB. Here, we compared the concentration of parent tetracyclines along with their intermediates, microbial biomass, and microbial (fungal and bacterial) community in CMB and the control soil (CK) on the day of 1, 5, 10, 20, 30, 45, and 60. The biochar amendment accelerated the removal of tetracyclines and their epimers from the soil. Bacterial community composition varied between the CMB and CK. The relative abundance and richness of the bacteria that correlated with the degradation of tetracyclines and their epimers was significantly higher in the CMB as compared to the CK. Specifically, the CMB had a more intricate network of the degrading bacteria with the three keystone genera viz. Acidothermus sp., Sphingomonas sp., and Blastococcus sp., whereas, the CK had a simple network with Sphingomonas sp. as the keystone genus. Overall, the biochar amendment accelerated the removal of tetracyclines and their epimers through the enrichment of potential tetracycline degrading bacteria in the soil; thus, it can be applied for the in situ remediation of soils contaminated with tetracyclines.

Temporal Changes in the Function of Bacterial Assemblages Associated With Decomposing Earthworms

Soil invertebrate corpse decomposition is an ecologically significant, yet poorly understood, process affecting nutrient biogeochemical cycling in terrestrial ecosystems. Here, we attempted to answer how the substrate chemistry and microbial community change during soil invertebrate (earthworm) decomposition and what roles microbes play in this process. Specifically, the dead earthworms (Amynthas corticis) were buried in two soils where the earthworms inhabited, or not, until more than 50% of the earthworm mass was lost. For both soils, earthworms decomposed faster during the early stage (between 0 and 3 days), as reflected by the higher rate of decomposition and increased accumulation of dissolved organic matter (DOM). This decomposition pattern was paralleled by bacterial community dynamics, where bacterial richness and diversity were significantly higher during early decomposition (p < 0.05) with the relative abundances of many genera decreasing as decomposition progressed. The succession of the bacterial community composition was significantly correlated with time-course changes in DOM composition (p < 0.05). Particularly, more functional groups (e.g., microbes associated with carbon, nitrogen, and sulfur cycling) were identified to be linked with the change of a specific DOM type during the early decomposition phase. By exploring the ecologically important process of soil invertebrate decomposition and its associated bacterial communities, this study provides evidence, e.g., a statistically significant positive correlation between bacterial community and DOM compositions, which supports the widely recognized yet less-tested microbial community structure–function relationship hypothesis in invertebrate decomposition.

Effects of polystyrene microplastics on uptake and toxicity of phenanthrene in soybean

Microplastics (MPs) can influence the availability of contaminants in the soil and have adverse effects on plants. Up to now, the effects of MPs on the uptake of organic pollutants by leguminous plants are still unclear. In this study, we explored the impacts and mechanisms of polystyrene MPs of different sizes on the uptake of phenanthrene (Phe) by soybean seedlings. The results showed that MPs decreased the uptake of Phe in soybean roots and leaves. Micron-size MPs showed a higher inhibition of Phe uptake in roots than nano-size MPs (4.83 mg/kg) at the beginning with concentrations of 1.89 mg/kg, 3.40 mg/kg, and 0.72 mg/kg in groups 1 μm, 10 μm, and 100 μm MPs/Phe, respectively. The combined toxicity of micron-size MPs and Phe to soybean plants was higher than that of nano-size MPs and Phe, and 100 μm MPs and Phe co-contaminant show the highest toxicity to soybean. The activities of antioxidative enzymes and their gene expression showed that micron-size MPs induced higher genotoxic and oxidative damage to soybean roots than nano-size MPs, which decreased the activity of roots, thus leading to the lower uptake of Phe by soybean roots and leaves. This study highlights that the combined exposure to MPs and Phe causes harmful effects on soybean plants and MPs inhibit the uptake of organic pollutants by higher plants.

Wide-bound salt tolerance of the inocula from marine sediment and their specific microbial community

The microorganisms in marine sediment are promising candidates for the treatment of the saline wastes due to their property of salt tolerance. However, the knowledge about the microbial community and property of the marine sediments is still limited. In the present study, the salt tolerance of the microorganisms in the marine sediment that was collected from a marine fish farm was investigated by being used as inoculum for anaerobic digestion. The microbial communities were analyzed by high-throughput sequencing. The inoculum from the wastewater plant (IWTP) was taken as a control. The inoculum from the marine sediment (IMS) showed excellent capacity for anaerobic digestion at salinities of 0.3%-6%. Even at a salinity of 9%, the methane yield remained 60% of the highest yield. IMS provides promising microbial resources for the treatment of both fresh-water and saliferous organic wastes. While the IWTP was sensitive to salt, the methane yield decreased to 56% of the highest yield at the salinity of 3%. The bacterial taxonomic richness of IMS was about half of that in IWTP. Eighty-one genera were identified only in IWTP but not in IMS. The IMS possessed fewer bacterial members related to the nitrogen cycle than IWTP, but more members related to the sulfur cycle. The members of animal parasites or symbionts in IMS were significantly fewer than those in IWTP. The archaeal compositions of IMS and IWTP were different. The relative abundance of the unidentified archaea in IMS was much higher than that in IWTP with 12.52% vs 0.06% at phylum level. The findings of this work expand our understanding of the microorganisms in marine sediments and will promote the application of them in waste treatment.

Clomazone improves the interactions between soil microbes and affects C and N cycling functions

Clomazone, a widely used herbicide, is mainly used in soybean fields. We previously found that clomazone alters Proteobacteria and Nitrospirae abundances and also alters urease activity, which result in changes in NH₄⁺ and NO₃^- contents in soil nitrogen cycling. It remains unknown, however, how the co-occurrence patterns of species and functions of soil ecosystems change in response to clomazone applications in soil. We designed a 3-month greenhouse experiment to investigate soil microorganism dynamics in response to clomazone. Clomazone was applied at three doses (e.g., T1, T10, T100), which significantly increased bacterial abundance at days 15 and 60. Fungal abundance was stimulated at day 30 in T10-treated soils, whereas fungal abundances decreased in T100-treated soils at day 15. Clomazone altered bacterial and fungal community structures. Network analyses showed more complex and highly connected microbial communities in clomazone-treated soils. Moreover, an Acidobacteria-dominated cluster was identified within each network of clomazone-treated soils. Clomazone applied at the recommended rate decreased the functional groups that were associated with denitrification and hydrogen oxidation at days 15 and 60, and enhanced photoheterotrophy from days 30 to 60. High clomazone inputs increased trophic types (e.g., chemoheterotrophy, phototrophy, photoautotrophy and cyanobacteria) and C cycling functional groups (e.g., fermentation and cellulolysis). The half-life of clomazone ranged from 40.1 to 93.5 days in three cases. Our results provide important information for use of this herbicide.

Cadmium Immobilization in the Rhizosphere and Plant Cellular Detoxification: Role of Plant-Growth-Promoting Rhizobacteria as a Sustainable Solution

Food is the major cadmium (Cd)-exposure pathway from agricultural soils to humans and other living entities and must be reduced in an effective way. A plant can select beneficial microbes, like plant-growth-promoting rhizobacteria (PGPR), depending upon the nature of root exudates in the rhizosphere, for its own benefits, such as plant growth promotion as well as protection from metal toxicity. This review intends to seek out information on the rhizo-immobilization of Cd in polluted soils using the PGPR along with plant nutrient fertilizers. This review suggests that the rhizo-immobilization of Cd by a combination of PGPR and nanohybrid-based plant nutrient fertilizers would be a potential and sustainable technology for phytoavailable Cd immobilization in the rhizosphere and plant cellular detoxification, by keeping the plant nutrition flow and green dynamics of plant nutrition and boosting the plant growth and development under Cd stress.

Carbon nanomaterials affect carbon cycle-related functions of the soil microbial community and the coupling of nutrient cycles

Many studies have examined changes in soil microbial community structure and composition by carbon nanomaterials (CNMs). Few, however, have investigated their impact on microbial community functions. This study explored how fullerene (C₆₀) and multi-walled carbon nanotubes (M50) altered functionality of an agricultural soil microbial community (Archaea, Bacteria and Eukarya), using microcosm experiments combined with GeoChip microarray. M50 had a stronger effect than C₆₀ on alpha diversity of microbial functional genes; both CNMs increased beta diversity, resulting in functional profiles distinct from the control. M50 exerted a broader, severer impact on microbially mediated nutrient cycles. Together, these two CNMs affected CO₂ fixation pathways, microbial degradation of diverse carbohydrates, secondary plant metabolites, lipids and phospholipids, proteins, as well as methanogenesis and methane oxidation. They also suppressed nitrogen fixation, nitrification, dissimilatory nitrogen reduction, eukaryotic assimilatory nitrogen reduction, and anaerobic ammonium oxidation (anammox). Phosphorus and sulfur cycles were less vulnerable; only phytic acid hydrolysis and sulfite reduction were inhibited by M50 but not C₆₀. Network analysis suggested decoupling of nutrient cycles by CNMs, manifesting closer and more hierarchical gene networks. This work reinforces profound impact of CNMs on soil microbial community functions and ecosystem services, laying a path for future investigation in this direction.

Physical Properties of Carbon Nanomaterials and Nanoceria Affect Pathways Important to the Nodulation Competitiveness of the Symbiotic N2 -Fixing Bacterium Bradyrhizobium diazoefficiens

The pathogenicity and antimicrobial properties of engineered nanomaterials (ENMs) are relatively well studied. However, less is known regarding the interactions of ENMs and agriculturally beneficial microorganisms that affect food security. Nanoceria (CeO2 nanoparticles (NPs)), multiwall carbon nanotubes (MWCNTs), graphene nanoplatelets (GNPs), and carbon black (CB) have been previously shown to inhibit symbiotic N2 fixation in soybeans, but direct rhizobial susceptibility is uncertain. Here, Bradyrhizobium diazoefficiens associated with symbiotic N2 fixation in soybeans is assessed, evaluating the role of soybean root exudates (RE) on ENM-bacterial interactions and the effects of CeO2 NPs, MWCNTs, GNPs, and CB on bacterial growth and gene expression. Although bacterial growth is inhibited by 50 mg L-1 CeO2 NPs, MWCNTs, and CB, all ENMs at 0.1 and 10 mg L-1 cause a global transcriptomic response that is mitigated by RE. ENMs may interfere with plant-bacterial signaling, as evidenced by suppressed upregulation of genes induced by RE, and downregulation of genes encoding transport RNA, which facilitates nodulation signaling. MWCNTs and CeO2 NPs inhibit the expression of genes conferring B. diazoefficiens nodulation competitiveness. Surprisingly, the transcriptomic effects on B. diazoefficiens are similar for these two ENMs, indicating that physical, not chemical, ENM properties explain the observed effects.

Interaction of graphene-family nanomaterials with microbial communities in sequential batch reactors revealed by high-throughput sequencing

The accelerated development and application of graphene-family nanomaterials (GFNs) have increased their release to various environments and converged in wastewater treatment plants (WWTPs). However, little is known about the interactions between GFNs and microbes in WWTPs. In this study, the interaction of graphene oxide (GO) or graphene (G) at different concentrations with microbial communities in sequential batch reactors was investigated. Transmission electron microscopy and Raman spectroscopy analyses showed that the structures of GFNs were obviously changed, which suggested GFNs could be degraded by some microbes. Significantly higher DNA concentration and lower cell number in high-concentration GO group were detected by DNA leakage test and qPCR analysis, which confirmed the microbial toxicity of GO. The chemical oxygen demand and ammonia nitrogen removals were significantly affected by G and GO with high concentrations. Further, high-throughput sequencing confirmed the composition and dynamic changes of microbial communities under GFNs exposure. Saccharibacteria genera incertae sedis (12.55-28.05%) and Nakamurella (20.45-29.30%) were the predominant genera at two stages, respectively. FAPROTAX suggested 12 functional groups with obvious changes related to the biogeochemical cycle of C, N and S. Molecular ecological network analysis showed that the networks were more complex in the presence of GFNs, and the increased negative interactions reflected more competition relationships in microbial communities. This study is the first to report the effect of GFNs on network of microbial communities, which provides in-depth insights into the complex and highlights concerns regarding the risk of GFNs to WWTPs.

Carbon Nanotubes-Based Nanomaterials and Their Agricultural and Biotechnological Applications

Carbon nanotubes (CNTs) are considered a promising nanomaterial for diverse applications owing to their attractive physicochemical properties such as high surface area, superior mechanical and thermal strength, electrochemical activity, and so on. Different techniques like arc discharge, laser vaporization, chemical vapor deposition (CVD), and vapor phase growth are explored for the synthesis of CNTs. Each technique has advantages and disadvantages. The physicochemical properties of the synthesized CNTs are profoundly affected by the techniques used in the synthesis process. Here, we briefly described the standard methods applied in the synthesis of CNTs and their use in the agricultural and biotechnological fields. Notably, better seed germination or plant growth was noted in the presence of CNTs than the control. However, the exact mechanism of action is still unclear. Significant improvements in the electrochemical performances have been observed in CNTs-doped electrodes than those of pure. CNTs or their derivatives are also utilized in wastewater treatment. The high surface area and the presence of different functional groups in the functionalized CNTs facilitate the better adsorption of toxic metal ions or other chemical moieties. CNTs or their derivatives can be applied for the storage of hydrogen as an energy source. It has been observed that the temperature widely influences the hydrogen storage ability of CNTs. This review paper highlighted some recent development on electrochemical platforms over single-walled CNTs (SWCNTs), multi-walled CNTs (MWCNTs), and nanocomposites as a promising biomaterial in the field of agriculture and biotechnology. It is possible to tune the properties of carbon-based nanomaterials by functionalization of their structure to use as an engineering toolkit for different applications, including agricultural and biotechnological fields.

Soybeans Grown with Carbonaceous Nanomaterials Maintain Nitrogen Stoichiometry by Assimilating Soil Nitrogen to Offset Impaired Dinitrogen Fixation

Engineered nanomaterials (ENMs) can enter agroecosystems because of their widespread use and disposal. Within soil, ENMs may affect legumes and their dinitrogen (N2) fixation, which are critical for food supply and N-cycling. Prior research focusing on end point treatment effects has reported that N2-fixing symbioses in an important food legume, soybean, can be impaired by ENMs. Yet, it remains unknown how ENMs can influence the actual amounts of N2 fixed and what plant total N contents are since plants can also acquire N from the soil. We determined the effects of one already widespread and two rapidly expanding carbonaceous nanomaterials (CNMs: carbon black, multiwalled carbon nanotubes, and graphene; each at three concentrations) on the N economy of soil-grown soybeans. Unlike previous studies, this research focused on processes and interactions within a plant-soil-microbial system. We found that total plant N accumulation was unaffected by CNMs. However, as shown by 15N isotope analyses, CNMs significantly diminished soybean N2 fixation (by 31-78%). Plants maintained N stoichiometry by assimilating compensatory N from the soil, accompanied by increased net soil N mineralization. Our findings suggest that CNMs could undermine the role of legume N2 fixation in supplying N to agroecosystems. Maintaining productivity in leguminous agriculture experiencing such effects would require more fossil-fuel-intensive N fertilizer and increase associated economic and environmental costs. This work highlights the value of a process-based analysis of a plant-soil-microbial system for assessing how ENMs in soil can affect legume N2 fixation and N-cycling.

Microstructure, bacterial community and metabolic prediction of multi-species biofilms following exposure to di-(2-ethylhexyl) phthalate (DEHP)

The occurrence and transportation of phthalate esters in biofilms from natural and engineered sources have attracted considerable research interest. However, little information is available highlighting the responses of multi-species biofilms in terms of their physicochemical structure and bacterial community induced by phthalate esters. Di-(2-ethylhexyl) phthalate (DEHP), a model phthalate eater, was selected to treat multi-species biofilm aggregates, including an attached biofilm from a moving bed bioreactor (MBBR), a periphytic biofilm from a natural source and activated sludge in short-term exposure experiments (120 h). The production of extracellular polymeric substances (EPS) from the three biofilms initially decreased and then slightly increased after exposure to DEHP, consistent with the variation of the most dominant fluorescent compounds consisting of humic-acid-like organic substances. The MBBR and periphytic biofilms secreted more fluorescence compounds than the activated sludge during the exposure period. The organic matter in the EPS was converted into smaller molecules, while limited variation was observed in the functional groups and secondary protein structures. Acinetobacter and Bacillus demonstrated significant increases and were likely the key genera responsible for DEHP degradation. The combined use of spectral, chromatographic and sequencing analyses indicated that the periphytic biofilm was more resistant to DEHP, possibly owing to the presence of more mature assemblages, including cells with higher metabolic activity and a higher diversity within the bacterial community. This study provides insights into the microstructural and bacterial responses of multi-species biofilms following exposure to phthalate esters, and provides important guidance for bioremediation of phthalate esters using periphytic biofilms.

Understanding the influence of carbon nanomaterials on microbial communities

Carbon nanomaterials (CNMs) are widely used because of their unique advantages in recent years. At the same time, the influence of CNMs on the environment is becoming increasingly prominent. This review mainly introduces the research progress in the effects of fullerenes, multi-walled carbon nanotubes (MWCNTs), single-walled carbon nanotubes (SWCNTs) and graphene on microorganisms and their toxicity mechanisms. On this basis, we have analyzed beneficial and adverse effects of fullerenes, graphene, MWCNTs and SWCNTs to microorganisms, and discussed the similarities of the toxicity mechanisms of different CNMs on microorganisms. This review helps provide ideas on how to protect microorganisms from the impacts of carbon nanomaterials, and it will be conductive to providing a strong theoretical basis for better application of carbon nanomaterials.

Enhancement of Spirotetramat Transfer in Cucumber Plant Using Mesoporous Silica Nanoparticles as Carriers

Pesticides will be used for a long period of time, and their use may cause environmental contamination and adverse effects on human health. The aim of this study was to improve the utilization rate of pesticides and reduce the risk to the environment using mesoporous silica nanoparticles (MSNs) as carriers. Compared to the conventional formulation, spirotetramat-loading MSNs improved deposition, uptake, and translocation performance in cucumber plants. MSNs may hold spirotetramat in their mesoporous structure and prevent its degradation in plants. The final residue of spirotetramat and its metabolites demonstrated that spirotetramat-loading MSNs had low risk to the edible parts of plants under foliar application. This study added our knowledge of MSNs controlling pesticide release and transfer in plant.