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Siddiqui R, Swank S, Ozark A, Joaquin F, Travis MP, McMahan CD, Bell MA, Stuart YE. Inferring the evolution of reproductive isolation in a lineage of fossil threespine stickleback, Gasterosteus doryssus. Proc Biol Sci 2024; 291:20240337. [PMID: 38628124 PMCID: PMC11021931 DOI: 10.1098/rspb.2024.0337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 03/19/2024] [Indexed: 04/19/2024] Open
Abstract
Darwin attributed the absence of species transitions in the fossil record to his hypothesis that speciation occurs within isolated habitat patches too geographically restricted to be captured by fossil sequences. Mayr's peripatric speciation model added that such speciation would be rapid, further explaining missing evidence of diversification. Indeed, Eldredge and Gould's original punctuated equilibrium model combined Darwin's conjecture, Mayr's model and 124 years of unsuccessfully sampling the fossil record for transitions. Observing such divergence, however, could illustrate the tempo and mode of evolution during early speciation. Here, we investigate peripatric divergence in a Miocene stickleback fish, Gasterosteus doryssus. This lineage appeared and, over approximately 8000 generations, evolved significant reduction of 12 of 16 traits related to armour, swimming and diet, relative to its ancestral population. This was greater morphological divergence than we observed between reproductively isolated, benthic-limnetic ecotypes of extant Gasterosteus aculeatus. Therefore, we infer that reproductive isolation was evolving. However, local extinction of G. doryssus lineages shows how young, isolated, speciating populations often disappear, supporting Darwin's explanation for missing evidence and revealing a mechanism behind morphological stasis. Extinction may also account for limited sustained divergence within the stickleback species complex and help reconcile speciation rate variation observed across time scales.
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Affiliation(s)
- Raheyma Siddiqui
- Department of Biology, Loyola University Chicago, Chicago, IL, USA
| | - Samantha Swank
- Department of Biology, Loyola University Chicago, Chicago, IL, USA
- Committee on Development, Regeneration, and Stem Cell Biology, University of Chicago, Chicago, IL, USA
| | - Allison Ozark
- Department of Biology, Loyola University Chicago, Chicago, IL, USA
| | - Franklin Joaquin
- Department of Biology, Loyola University Chicago, Chicago, IL, USA
| | - Matthew P. Travis
- Department of Biological and Biomedical Sciences, Rowan University, Glassboro, NJ, USA
| | | | - Michael A. Bell
- University of California Museum of Paleontology, Berkeley, CA, USA
| | - Yoel E. Stuart
- Department of Biology, Loyola University Chicago, Chicago, IL, USA
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2
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Spaulding F, McLaughlin JF, Cheek RG, McCracken KG, Glenn TC, Winker K. Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex. Mol Phylogenet Evol 2023; 182:107733. [PMID: 36801373 PMCID: PMC10092703 DOI: 10.1016/j.ympev.2023.107733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 01/31/2023] [Accepted: 02/09/2023] [Indexed: 02/18/2023]
Abstract
The processes leading to divergence and speciation can differ broadly among taxa with different life histories. We examine these processes in a small clade of ducks with historically uncertain relationships and species limits. The green-winged teal (Anas crecca) complex is a Holarctic species of dabbling duck currently categorized as three subspecies (Anas crecca crecca, A. c. nimia, and A. c. carolinensis) with a close relative, the yellow-billed teal (Anas flavirostris) from South America. A. c. crecca and A. c. carolinensis are seasonal migrants, while the other taxa are sedentary. We examined divergence and speciation patterns in this group, determining their phylogenetic relationships and the presence and levels of gene flow among lineages using both mitochondrial and genome-wide nuclear DNA obtained from 1,393 ultraconserved element (UCE) loci. Phylogenetic relationships using nuclear DNA among these taxa showed A. c. crecca, A. c. nimia, and A. c. carolinensis clustering together to form one polytomous clade, with A. flavirostris sister to this clade. This relationship can be summarized as (crecca, nimia, carolinensis)(flavirostris). However, whole mitogenomes revealed a different phylogeny: (crecca, nimia)(carolinensis, flavirostris). The best demographic model for key pairwise comparisons supported divergence with gene flow as the probable speciation mechanism in all three contrasts (crecca-nimia, crecca-carolinensis, and carolinensis-flavirostris). Given prior work, gene flow was expected among the Holarctic taxa, but gene flow between North American carolinensis and South American flavirostris (M ∼0.1-0.4 individuals/generation), albeit low, was not expected. Three geographically oriented modes of divergence are likely involved in the diversification of this complex: heteropatric (crecca-nimia), parapatric (crecca-carolinensis), and (mostly) allopatric (carolinensis-flavirostris). Our study shows that ultraconserved elements are a powerful tool for simultaneously studying systematics and population genomics in systems with historically uncertain relationships and species limits.
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Affiliation(s)
- Fern Spaulding
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK, USA; Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, AK, USA.
| | - Jessica F McLaughlin
- Department of Environmental Science, Policy, and Management, University of California Berkeley, Berkeley, CA, USA
| | - Rebecca G Cheek
- Graduate Degree Program in Ecology, Department of Biology, Colorado State University, Fort Collins, CO, USA
| | - Kevin G McCracken
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK, USA; Department of Biology, University of Miami, Coral Gables, FL, USA
| | - Travis C Glenn
- Department of Environmental Health Science, University of Georgia, Athens, GA, USA
| | - Kevin Winker
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK, USA; Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, AK, USA
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3
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Scherz MD, Schmidt R, Brown JL, Glos J, Lattenkamp EZ, Rakotomalala Z, Rakotoarison A, Rakotonindrina RT, Randriamalala O, Raselimanana AP, Rasolonjatovo SM, Ratsoavina FM, Razafindraibe JH, Glaw F, Vences M. Repeated divergence of amphibians and reptiles across an elevational gradient in northern Madagascar. Ecol Evol 2023; 13:e9914. [PMID: 36937068 PMCID: PMC10019947 DOI: 10.1002/ece3.9914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 02/22/2023] [Accepted: 02/28/2023] [Indexed: 03/18/2023] Open
Abstract
How environmental factors shape patterns of biotic diversity in tropical ecosystems is an active field of research, but studies examining the possibility of ecological speciation in terrestrial tropical ecosystems are scarce. We use the isolated rainforest herpetofauna on the Montagne d'Ambre (Amber Mountain) massif in northern Madagascar as a model to explore elevational divergence at the level of populations and communities. Based on intensive sampling and DNA barcoding of amphibians and reptiles along a transect ranging from ca. 470-1470 m above sea level (a.s.l.), we assessed a main peak in species richness at an elevation of ca. 1000 m a.s.l. with 41 species. The proportion of local endemics was highest (about 1/3) at elevations >1100 m a.s.l. Two species of chameleons (Brookesia tuberculata, Calumma linotum) and two species of frogs (Mantidactylus bellyi, M. ambony) studied in depth by newly developed microsatellite markers showed genetic divergence up the slope of the mountain, some quite strong, others very weak, but in each case with genetic breaks between 1100 and 1270 m a.s.l. Genetic clusters were found in transect sections significantly differing in bioclimate and herpetological community composition. A decrease in body size was detected in several species with increasing elevation. The studied rainforest amphibians and reptiles show concordant population genetic differentiation across elevation along with morphological and niche differentiation. Whether this parapatric or microallopatric differentiation will suffice for the completion of speciation is, however, unclear, and available phylogeographic evidence rather suggests that a complex interplay between ecological and allopatric divergence processes is involved in generating the extraordinary species diversity of Madagascar's biota. Our study reveals concordant patterns of diversification among main elevational bands, but suggests that these adaptational processes are only part of the complex of processes leading to species formation, among which geographical isolation is probably also important.
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Affiliation(s)
- Mark D. Scherz
- Zoologisches InstitutTechnische Universität BraunschweigBraunschweigGermany
- Natural History Museum of DenmarkUniversity of CopenhagenCopenhagen ØDenmark
| | - Robin Schmidt
- Zoologisches InstitutTechnische Universität BraunschweigBraunschweigGermany
| | - Jason L. Brown
- School of Biological SciencesSouthern Illinois UniversityCarbondaleIllinoisUSA
| | - Julian Glos
- Institute of Cell and Systems BiologyUniversität HamburgHamburgGermany
| | - Ella Z. Lattenkamp
- Neurogenetics of Vocal Communication GroupMax Planck Institute for PsycholinguisticsNijmegenThe Netherlands
- Division of Neurobiology, Department of Biology IILudwig Maximilians University MunichMartinsriedGermany
| | | | - Andolalao Rakotoarison
- Mention Zoologie et Biodiversité AnimaleUniversité d'AntananarivoAntananarivoMadagascar
- School for International TrainingAntananarivoMadagascar
| | | | - Onja Randriamalala
- Mention Zoologie et Biodiversité AnimaleUniversité d'AntananarivoAntananarivoMadagascar
| | - Achille P. Raselimanana
- Mention Zoologie et Biodiversité AnimaleUniversité d'AntananarivoAntananarivoMadagascar
- Association VahatraAntananarivoMadagascar
| | - Safidy M. Rasolonjatovo
- Mention Zoologie et Biodiversité AnimaleUniversité d'AntananarivoAntananarivoMadagascar
- Association VahatraAntananarivoMadagascar
| | | | - Jary H. Razafindraibe
- Mention Zoologie et Biodiversité AnimaleUniversité d'AntananarivoAntananarivoMadagascar
| | - Frank Glaw
- Zoologische Staatssammlung München (ZSM‐SNSB)MunichGermany
| | - Miguel Vences
- Zoologisches InstitutTechnische Universität BraunschweigBraunschweigGermany
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4
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Begum M, Nolan V, MacColl ADC. Ecological constraint, rather than opportunity, promotes adaptive radiation in three-spined stickleback ( Gasterosteus aculeatus) on North Uist. Ecol Evol 2023; 13:e9716. [PMID: 36644706 PMCID: PMC9831901 DOI: 10.1002/ece3.9716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 12/13/2022] [Accepted: 12/16/2022] [Indexed: 01/12/2023] Open
Abstract
The context and cause of adaptive radiations have been widely described and explored but why rapid evolutionary diversification does not occur in related evolutionary lineages has yet to be understood. The standard answer is that evolutionary diversification is provoked by ecological opportunity and that some lineages do not encounter the opportunity. Three-spined sticklebacks on the Scottish island of North Uist show enormous diversification, which seems to be associated with the diversity of aquatic habitats. Sticklebacks on the neighboring island of South Uist have not been reported to show the same level of evolutionary diversity, despite levels of environmental variation that we might expect to be similar to North Uist. In this study, we compared patterns of morphological and environmental diversity on North and South Uist. Ancestral anadromous sticklebacks from both islands exhibited similar morphology including size and bony "armor." Resident sticklebacks showed significant variation in armor traits in relation to pH of water. However, North Uist sticklebacks exhibited greater diversity of morphological traits than South Uist and this was associated with greater diversity in pH of the waters of lochs on North Uist. Highly acidic and highly alkaline freshwater habitats are missing, or uncommon, on South Uist. Thus, pH appears to act as a causal factor driving the evolutionary diversification of stickleback in local adaptation in North and South Uist. This is consistent with diversification being more associated with ecological constraint than ecological opportunity.
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Affiliation(s)
- Mahmuda Begum
- School of Life SciencesUniversity of NottinghamNottinghamUK,Zoology Section, Biological Research DivisionBangladesh Council of Scientific & Industrial Research (BCSIR)DhakaBangladesh
| | - Victoria Nolan
- School of Life SciencesUniversity of NottinghamNottinghamUK
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Anderson SAS, López-Fernández H, Weir JT. Ecology and the origin of non-ephemeral species. Am Nat 2022; 201:619-638. [PMID: 37130236 DOI: 10.1086/723763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
AbstractResearch over the past three decades has shown that ecology-based extrinsic reproductive barriers can rapidly arise to generate incipient species-but such barriers can also rapidly dissolve when environments change, resulting in incipient species collapse. Understanding the evolution of unconditional, "intrinsic" reproductive barriers is therefore important for understanding the longer-term buildup of biodiversity. In this article, we consider ecology's role in the evolution of intrinsic reproductive isolation. We suggest that this topic has fallen into a gap between disciplines: while evolutionary ecologists have traditionally focused on the rapid evolution of extrinsic isolation between co-occurring ecotypes, speciation geneticists studying intrinsic isolation in other taxa have devoted little attention to the ecological context in which it evolves. We argue that for evolutionary ecology to close this gap, the field will have to expand its focus beyond rapid adaptation and its traditional model systems. Synthesizing data from several subfields, we present circumstantial evidence for and against different forms of ecological adaptation as promoters of intrinsic isolation and discuss alternative forces that may be significant. We conclude by outlining complementary approaches that can better address the role of ecology in the evolution of nonephemeral reproductive barriers and, by extension, less ephemeral species.
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6
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Uncovering the enigmatic evolution of bears in greater depth: The hybrid origin of the Asiatic black bear. Proc Natl Acad Sci U S A 2022; 119:e2120307119. [PMID: 35858381 PMCID: PMC9351369 DOI: 10.1073/pnas.2120307119] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Bears are fascinating mammals because of their complex pattern of speciation and rapid evolution of distinct phenotypes. Interspecific hybridization has been common and has shaped the complex evolutionary history of bears. In this study, based on the largest population-level genomic dataset to date involving all Ursinae species and recently developed methods for detecting hybrid speciation, we provide explicit evidence for the hybrid origin of Asiatic black bears, which arose through historical hybridization between the ancestor of polar bear/brown bear/American black bears and the ancestor of sun bear/sloth bears. This was inferred to have occurred soon after the divergence of the two parental lineages in Eurasia due to climate-driven population expansion and dispersal. In addition, we found that the intermediate body size of this hybrid species arose from its combination of relevant genes derived from two parental lineages of contrasting sizes. This and alternate fixation of numerous other loci that had diverged between parental lineages may have initiated the reproductive isolation of the Asiatic black bear from its two parents. Our study sheds further light on the evolutionary history of bears and documents the importance of hybridization in new species formation and phenotypic evolution in mammals.
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7
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Abstract
Speciation is the process by which barriers to gene flow evolve between populations. Although we now know that speciation is largely driven by natural selection, knowledge of the agents of selection and the genetic and genomic mechanisms that facilitate divergence is required for a satisfactory theory of speciation. In this essay, we highlight three advances/problems in our understanding of speciation that have arisen from studies of the genes and genomic regions that underlie the evolution of reproductive isolation. First, we describe how the identification of “speciation” genes makes it possible to identify the agents of selection causing the evolution of reproductive isolation, while also noting that the link between the genetics of phenotypic divergence and intrinsic postzygotic reproductive barriers remains tenuous. Second, we discuss the important role of recombination suppressors in facilitating speciation with gene flow, but point out that the means and timing by which reproductive barriers become associated with recombination cold spots remains uncertain. Third, we establish the importance of ancient genetic variation in speciation, although we argue that the focus of speciation studies on evolutionarily young groups may bias conclusions in favor of ancient variation relative to new mutations.
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8
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Aguirre WE, Reid K, Rivera J, Heins DC, Veeramah KR, Bell MA. Freshwater Colonization, Adaptation, and Genomic Divergence in Threespine Stickleback. Integr Comp Biol 2022; 62:388-405. [PMID: 35660873 PMCID: PMC9405723 DOI: 10.1093/icb/icac071] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Revised: 04/25/2022] [Accepted: 05/24/2022] [Indexed: 11/14/2022] Open
Abstract
The Threespine Stickleback is ancestrally a marine fish, but many marine populations breed in fresh water (i.e., are anadromous), facilitating their colonization of isolated freshwater habitats a few years after they form. Repeated adaptation to fresh water during at least 10 My and continuing today has led to Threespine Stickleback becoming a premier system to study rapid adaptation. Anadromous and freshwater stickleback breed in sympatry and may hybridize, resulting in introgression of freshwater-adaptive alleles into anadromous populations, where they are maintained at low frequencies as ancient standing genetic variation. Anadromous stickleback have accumulated hundreds of freshwater-adaptive alleles that are disbursed as few loci per marine individual and provide the basis for adaptation when they colonize fresh water. Recent whole-lake experiments in lakes around Cook Inlet, Alaska have revealed how astonishingly rapid and repeatable this process is, with the frequency of 40% of the identified freshwater-adaptive alleles increasing from negligible (∼1%) in the marine founder to ≥50% within ten generations in fresh water, and freshwater phenotypes evolving accordingly. These high rates of genomic and phenotypic evolution imply very intense directional selection on phenotypes of heterozygotes. Sexual recombination rapidly assembles freshwater-adaptive alleles that originated in different founders into multilocus freshwater haplotypes, and regions important for adaptation to freshwater have suppressed recombination that keeps advantageous alleles linked within large haploblocks. These large haploblocks are also older and appear to have accumulated linked advantageous mutations. The contemporary evolution of Threespine Stickleback has provided broadly applicable insights into the mechanisms that facilitate rapid adaptation.
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Affiliation(s)
- Windsor E Aguirre
- Department of Biological Sciences, DePaul University, Chicago, IL 60614, USA
| | - Kerry Reid
- School of Biological Sciences, Area of Ecology and Biodiversity, University of Hong Kong, Hong Kong, SAR, China.,Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794, USA
| | - Jessica Rivera
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - David C Heins
- Department of Ecology and Evolutionary Biology, Tulane University, New Orleans 70118, USA
| | - Krishna R Veeramah
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794, USA
| | - Michael A Bell
- University of California Museum of Paleontology, University of California, Berkeley, CA 94720, USA
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9
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Ramesh A, Groothuis TGG, Weissing FJ, Nicolaus M. Habitat fragmentation induces rapid divergence of migratory and isolated sticklebacks. Behav Ecol 2021. [DOI: 10.1093/beheco/arab121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Abstract
The adaptive capacity of many organisms is seriously challenged by human-imposed environmental change, which currently happens at unprecedented rates and magnitudes. For migratory fish, habitat fragmentation is a major challenge that can compromise their survival and reproduction. Therefore, it is important to study if fish populations can adapt to such modifications of their habitat. Here, we study whether originally anadromous three-spined stickleback populations (Gasterosteus aculeatus; “migrants”) changed in behavior and morphology in response to human-induced isolation. We made use of a natural field-experiment, where the construction of pumping stations and sluices in the 1970s unintendedly created replicates of land-locked stickleback populations (“resident”) in the Netherlands. For two years, we systematically tested populations of residents and migrants for differences in morphology and behavioral traits (activity, aggressiveness, exploration, boldness, and shoaling) in lab-based assays. We detected differences between migrant and resident populations in virtually all phenotypic traits studied: compared with the ancestral migrants, residents were smaller in size, had fewer and smaller plates and were significantly more active, aggressive, exploratory and bolder, and shoaled less. Despite large ecological differences between 2018 and 2019, results were largely consistent across the two years. Our study shows that human-induced environmental change has led to the rapid and consistent morphological and behavioral divergence of stickleback populations in about 50 generations. Such changes may be adaptive but this remains to be tested.
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Affiliation(s)
- Aparajitha Ramesh
- Theoretical Research in Evolutionary Life Sciences group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
- Evolutionary Genetics, Development & Behaviour group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
- Conservation Ecology group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
| | - Ton G G Groothuis
- Evolutionary Genetics, Development & Behaviour group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
- Theoretical Research in Evolutionary Life Sciences group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
| | - Franz J Weissing
- Theoretical Research in Evolutionary Life Sciences group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
- Theoretical Research in Evolutionary Life Sciences group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
| | - Marion Nicolaus
- Conservation Ecology group, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh, AG Groningen, The Netherlands
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Li Q, Chen C, Wu Y, Siddiqui JA, Lu C, Cheng Z, Li Y, Liu Q, Huang X. Specialization on Ficus Supported by Genetic Divergence and Morphometrics in Sympatric Host-Populations of the Camellia Aphid, Aphis aurantii. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.786450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Adaptation to different host plants is considered to be an important driver of the divergence and speciation of herbivorous insects. The application of molecular data and integrated taxonomic practices in recent years may contribute to our understanding of population divergence and speciation, especially for herbivorous insects considered to be polyphagous. Aphis aurantii is an important agricultural and forestry pest with a broad range of host plants. In this study, samples of A. aurantii feeding on different host plants in the same geographical area were collected, and their population genetic divergence and morphological difference were analyzed. Phylogenetic analysis and haplotype network analysis based on five genes revealed that the population on Ficus exhibited significantly genetic divergence from populations on other host plants, which was also supported by the statistical analysis based on measurements of 38 morphological characters. Our results suggest that A. aurantii has undergone specialized evolution on Ficus, and the Ficus population may represent a lineage that is experiencing ongoing sympatric speciation.
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Abstract
The repeated adaptation of oceanic threespine sticklebacks to fresh water has made it a premier organism to study parallel evolution. These small fish have multiple distinct ecotypes that display a wide range of diverse phenotypic traits. Ecotypes are easily crossed in the laboratory, and families are large and develop quickly enough for quantitative trait locus analyses, positioning the threespine stickleback as a versatile model organism to address a wide range of biological questions. Extensive genomic resources, including linkage maps, a high-quality reference genome, and developmental genetics tools have led to insights into the genomic basis of adaptation and the identification of genomic changes controlling traits in vertebrates. Recently, threespine sticklebacks have been used as a model system to identify the genomic basis of highly complex traits, such as behavior and host-microbiome and host-parasite interactions. We review the latest findings and new avenues of research that have led the threespine stickleback to be considered a supermodel of evolutionary genomics.
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Affiliation(s)
- Kerry Reid
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York 11794, USA;
| | - Michael A Bell
- University of California Museum of Paleontology, Berkeley, California 94720, USA
| | - Krishna R Veeramah
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York 11794, USA;
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12
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Yong L, Croft DP, Troscianko J, Ramnarine IW, Wilson AJ. Sensory-based quantification of male colour patterns in Trinidadian guppies reveals no support for parallel phenotypic evolution in multivariate trait space. Mol Ecol 2021; 31:1337-1357. [PMID: 34170592 DOI: 10.1111/mec.16039] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 03/29/2021] [Accepted: 06/16/2021] [Indexed: 12/01/2022]
Abstract
Parallel evolution, in which independent populations evolve along similar phenotypic trajectories, offers insights into the repeatability of adaptive evolution. Here, we revisit a classic example of parallelism, that of repeated evolution of brighter males in the Trinidadian guppy (Poecilia reticulata). In guppies, colonisation of low predation habitats is associated with emergence of 'more colourful' phenotypes since predator-induced viability selection for crypsis weakens while sexual selection by female preference for conspicuousness remains strong. Our study differs from previous investigations in three respects. First, we adopted a multivariate phenotyping approach to characterise parallelism in multitrait space. Second, we used ecologically-relevant colour traits defined by the visual systems of the two selective agents (i.e., guppy, predatory cichlid). Third, we estimated population genetic structure to test for adaptive (parallel) evolution against a model of neutral phenotypic divergence. We find strong phenotypic differentiation that is inconsistent with a neutral model but very limited support for the predicted pattern of greater conspicuousness at low predation. Effects of predation regime on each trait were in the expected direction, but weak, largely nonsignificant, and explained little among-population variation. In multitrait space, phenotypic trajectories of lineages colonising low from high predation regimes were not parallel. Our results are consistent with reduced predation risk facilitating adaptive differentiation, potentially by female choice, but suggest that this proceeds in independent directions of multitrait space across lineages. Pool-sequencing data also revealed SNPs showing greater differentiation than expected under neutrality, among which some are found in genes contributing to colour pattern variation, presenting opportunities for future genetic study.
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Affiliation(s)
- Lengxob Yong
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Penryn, UK
| | - Darren P Croft
- Centre for Research in Animal Behaviour, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Jolyon Troscianko
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Penryn, UK
| | - Indar W Ramnarine
- Department of Life Sciences, The University of The West Indies, St Augustine, Trinidad and Tobago
| | - Alastair J Wilson
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Penryn, UK
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13
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Vélez-Mora DP, Trigueros-Alatorre K, Quintana-Ascencio PF. Evidence of Morphological Divergence and Reproductive Isolation in a Narrow Elevation Gradient. Evol Biol 2021. [DOI: 10.1007/s11692-021-09541-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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14
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Grummer JA, Whitlock MC, Schulte PM, Taylor EB. Growth genes are implicated in the evolutionary divergence of sympatric piscivorous and insectivorous rainbow trout (Oncorhynchus mykiss). BMC Ecol Evol 2021; 21:63. [PMID: 33888062 PMCID: PMC8063319 DOI: 10.1186/s12862-021-01795-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 04/12/2021] [Indexed: 12/26/2022] Open
Abstract
Background Identifying ecologically significant phenotypic traits and the genomic mechanisms that underly them are crucial steps in understanding traits associated with population divergence. We used genome-wide data to identify genomic regions associated with key traits that distinguish two ecomorphs of rainbow trout (Oncorhynchus mykiss)—insectivores and piscivores—that coexist for the non-breeding portion of the year in Kootenay Lake, southeastern British Columbia. “Gerrards” are large-bodied, rapidly growing piscivores with high metabolic rates that spawn north of Kootenay Lake in the Lardeau River, in contrast to the insectivorous populations that are on average smaller in body size, with lower growth and metabolic rates, mainly forage on aquatic insects, and spawn in tributaries immediately surrounding Kootenay Lake. We used pool-seq data representing ~ 60% of the genome and 80 fish per population to assess the level of genomic divergence between ecomorphs and to identify and interrogate loci that may play functional or selective roles in their divergence. Results Genomic divergence was high between sympatric insectivores and piscivores (\documentclass[12pt]{minimal}
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\begin{document}$$F_{\text{ST}}$$\end{document}FST = 0.188), and in fact higher than between insectivorous populations from Kootenay Lake and the Blackwater River (\documentclass[12pt]{minimal}
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\begin{document}$$F_{\text{ST}}$$\end{document}FST = 0.159) that are > 500 km apart. A window-based \documentclass[12pt]{minimal}
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\begin{document}$$F_{\text{ST}}$$\end{document}FST analysis did not reveal “islands” of genomic differentiation; however, the window with highest \documentclass[12pt]{minimal}
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\begin{document}$$F_{\text{ST}}$$\end{document}FST estimate did include a gene associated with insulin secretion. Although we explored the use of the “Local score” approach to identify genomic outlier regions, this method was ultimately not used because simulations revealed a high false discovery rate (~ 20%). Gene ontology (GO) analysis identified several growth processes as enriched in genes occurring in the ~ 200 most divergent genomic windows, indicating many loci of small effect involved in growth and growth-related metabolic processes are associated with the divergence of these ecomorphs. Conclusion Our results reveal a high degree of genomic differentiation between piscivorous and insectivorous populations and indicate that the large body piscivorous phenotype is likely not due to one or a few loci of large effect. Rather, the piscivore phenotype may be controlled by several loci of small effect, thus highlighting the power of whole-genome resequencing in identifying genomic regions underlying population-level phenotypic divergences. Supplementary Information The online version contains supplementary material available at 10.1186/s12862-021-01795-9.
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Affiliation(s)
- Jared A Grummer
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
| | - Michael C Whitlock
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada
| | - Patricia M Schulte
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada
| | - Eric B Taylor
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.,Beaty Biodiversity Museum, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada
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15
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Li Q, Lin X, Li J, Liu B, Huang X. Differentiation in the eastern Asian Periphyllus koelreuteriae (Hemiptera: Aphididae) species complex driven by climate and host plant. Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blaa206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Divergent adaptation to different ecological conditions is regarded as important for speciation. For phytophagous insects, there is limited empirical evidence on species differentiation driven by climate and host plant. The recent application of molecular data and integrative taxonomic practice may improve our understanding of population divergence and speciation. Periphyllus koelreuteriae aphids feed exclusively on Koelreuteria (Sapindaceae) in temperate and subtropical regions of eastern Asia, and show morphological and phenological variations in different regions. In this study, phylogenetic and haplotype network analyses based on four genes revealed that P. koelreuteriae populations comprised three distinct genetic clades corresponding to climate and host plants, with the populations from subtropical highland regions and on Koelreuteria bipinnata host plants representing the most basal clade. These genetic lineages also showed distinct characteristics in terms of morphology and life cycle. The results indicate that P. koelreuteriae is a species complex with previously unrevealed lineages, whose differentiation may have been driven by climatic difference and host plant.
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Affiliation(s)
- Qiang Li
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xiaolan Lin
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Junjie Li
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Bing Liu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xiaolei Huang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, China
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, China
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16
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Dean LL, Dunstan HR, Reddish A, MacColl ADC. Courtship behavior, nesting microhabitat, and assortative mating in sympatric stickleback species pairs. Ecol Evol 2021; 11:1741-1755. [PMID: 33614001 PMCID: PMC7882950 DOI: 10.1002/ece3.7164] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 11/26/2020] [Accepted: 12/14/2020] [Indexed: 12/28/2022] Open
Abstract
The maintenance of reproductive isolation in the face of gene flow is a particularly contentious topic, but differences in reproductive behavior may provide the key to explaining this phenomenon. However, we do not yet fully understand how behavior contributes to maintaining species boundaries. How important are behavioral differences during reproduction? To what extent does assortative mating maintain reproductive isolation in recently diverged populations and how important are "magic traits"? Assortative mating can arise as a by-product of accumulated differences between divergent populations as well as an adaptive response to contact between those populations, but this is often overlooked. Here we address these questions using recently described species pairs of three-spined stickleback (Gasterosteus aculeatus), from two separate locations and a phenotypically intermediate allopatric population on the island of North Uist, Scottish Western Isles. We identified stark differences in the preferred nesting substrate and courtship behavior of species pair males. We showed that all males selectively court females of their own ecotype and all females prefer males of the same ecotype, regardless of whether they are from species pairs or allopatric populations. We also showed that mate choice does not appear to be driven by body size differences (a potential "magic trait"). By explicitly comparing the strength of these mating preferences between species pairs and single-ecotype locations, we were able to show that present levels of assortative mating due to direct mate choice are likely a by-product of other adaptations between ecotypes, and not subject to obvious selection in species pairs. Our results suggest that ecological divergence in mating characteristics, particularly nesting microhabitat may be more important than direct mate choice in maintaining reproductive isolation in stickleback species pairs.
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Affiliation(s)
- Laura L. Dean
- School of Life SciencesUniversity of NottinghamNottinghamUK
| | | | - Amelia Reddish
- School of Life SciencesUniversity of NottinghamNottinghamUK
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17
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Tinghitella RM, Lackey ACR, Durso C, Koop JAH, Boughman JW. The ecological stage changes benefits of mate choice and drives preference divergence. Philos Trans R Soc Lond B Biol Sci 2020; 375:20190546. [PMID: 32654644 DOI: 10.1098/rstb.2019.0546] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Preference divergence is thought to contribute to reproductive isolation. Ecology can alter the way selection acts on female preferences, making them most likely to diverge when ecological conditions vary among populations. We present a novel mechanism for ecologically dependent sexual selection, termed 'the ecological stage' to highlight its ecological dependence. Our hypothesized mechanism emphasizes that males and females interact over mating in a specific ecological context, and different ecological conditions change the costs and benefits of mating interactions, selecting for different preferences in distinct environments and different male traits, especially when traits are condition dependent. We test key predictions of this mechanism in a sympatric three-spine stickleback species pair. We used a maternal half-sib split-clutch design for both species, mating females to attractive and unattractive males and raising progeny on alternate diets that mimic the specialized diets of the species in nature. We estimated the benefits of mate choice for an indicator trait (male nuptial colour) by measuring many fitness components across the lifetimes of both sons and daughters from these crosses. We analysed fitness data using a combination of aster and mixed models. We found that many benefits of mating with high-colour males depended on both species and diet. These results support the ecological stage hypothesis for sticklebacks. Finally, we discuss the potential role of this mechanism for other taxa and highlight its ability to enhance reproductive isolation as speciation proceeds, thus facilitating the evolution of strong reproductive isolation. This article is part of the theme issue 'Towards the completion of speciation: the evolution of reproductive isolation beyond the first barriers'.
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Affiliation(s)
| | - Alycia C R Lackey
- Biological Sciences Department, Binghamton University, Binghamton, NY, USA
| | - Catherine Durso
- Engineering and Computer Science, University of Denver, Denver, CO, USA
| | - Jennifer A H Koop
- Department of Biological Sciences, Northern Illinois University, DeKalb, IL, USA
| | - Janette W Boughman
- Department of Integrative Biology and Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, MI, USA
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18
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Fuxjäger L, Wanzenböck S, Ringler E, Wegner KM, Ahnelt H, Shama LNS. Within-generation and transgenerational plasticity of mate choice in oceanic stickleback under climate change. Philos Trans R Soc Lond B Biol Sci 2020; 374:20180183. [PMID: 30966960 DOI: 10.1098/rstb.2018.0183] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Plasticity, both within and across generations, can shape sexual traits involved in mate choice and reproductive success, and thus direct measures of fitness. Especially, transgenerational plasticity (TGP), where parental environment influences offspring plasticity in future environments, could compensate for otherwise negative effects of environmental change on offspring sexual traits. We conducted a mate choice experiment using stickleback ( Gasterosteus aculeatus) with different thermal histories (ambient 17°C or elevated 21°C) within and across generations under simulated ocean warming using outdoor mesocosms. Parentage analysis of egg clutches revealed that maternal developmental temperature and reproductive (mesocosm) environment affected egg size, with females that developed at 17°C laying smaller eggs in 21°C mesocosms, likely owing to metabolic costs at elevated temperature. Paternal developmental temperature interacted with the reproductive environment to influence mating success, particularly under simulated ocean warming, with males that developed at 21°C showing lower overall mating success compared with 17°C males, but higher mating success in 21°C mesocosms. Furthermore, mating success of males was influenced by the interaction between F1 developmental temperature and F0 parent acclimation temperature, demonstrating the potential role of both TGP and within-generation plasticity in shaping traits involved in sexual selection and mate choice, potentially facilitating rapid responses to environmental change. This article is part of the theme issue 'The role of plasticity in phenotypic adaptation to rapid environmental change'.
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Affiliation(s)
- Lukas Fuxjäger
- 1 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung , Coastal Ecology Section, Wadden Sea Station Sylt, Hafenstrasse 43, 25992 List , Germany.,2 Department of Theoretical Biology, University of Vienna , Althanstrasse 14, Vienna , Austria
| | - Sylvia Wanzenböck
- 1 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung , Coastal Ecology Section, Wadden Sea Station Sylt, Hafenstrasse 43, 25992 List , Germany.,2 Department of Theoretical Biology, University of Vienna , Althanstrasse 14, Vienna , Austria
| | - Eva Ringler
- 3 Messerli Research Institute, University of Veterinary Medicine Vienna, Medical University of Vienna, University of Vienna , Veterinaerplatz 1, 1210 Vienna , Austria
| | - K Mathias Wegner
- 1 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung , Coastal Ecology Section, Wadden Sea Station Sylt, Hafenstrasse 43, 25992 List , Germany
| | - Harald Ahnelt
- 2 Department of Theoretical Biology, University of Vienna , Althanstrasse 14, Vienna , Austria.,4 First Zoological Department, Natural History Museum in Vienna , Burgring 7, 1010 Vienna , Austria
| | - Lisa N S Shama
- 1 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung , Coastal Ecology Section, Wadden Sea Station Sylt, Hafenstrasse 43, 25992 List , Germany
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19
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Tobler M, Barts N, Greenway R. Mitochondria and the Origin of Species: Bridging Genetic and Ecological Perspectives on Speciation Processes. Integr Comp Biol 2020; 59:900-911. [PMID: 31004483 DOI: 10.1093/icb/icz025] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Mitochondria have been known to be involved in speciation through the generation of Dobzhansky-Muller incompatibilities, where functionally neutral co-evolution between mitochondrial and nuclear genomes can cause dysfunction when alleles are recombined in hybrids. We propose that adaptive mitochondrial divergence between populations can not only produce intrinsic (Dobzhansky-Muller) incompatibilities, but could also contribute to reproductive isolation through natural and sexual selection against migrants, post-mating prezygotic isolation, as well as by causing extrinsic reductions in hybrid fitness. We describe how these reproductive isolating barriers can potentially arise through adaptive divergence of mitochondrial function in the absence of mito-nuclear coevolution, a departure from more established views. While a role for mitochondria in the speciation process appears promising, we also highlight critical gaps of knowledge: (1) many systems with a potential for mitochondrially-mediated reproductive isolation lack crucial evidence directly linking reproductive isolation and mitochondrial function; (2) it often remains to be seen if mitochondrial barriers are a driver or a consequence of reproductive isolation; (3) the presence of substantial gene flow in the presence of mito-nuclear incompatibilities raises questions whether such incompatibilities are strong enough to drive speciation to completion; and (4) it remains to be tested how mitochondrial effects on reproductive isolation compare when multiple mechanisms of reproductive isolation coincide. We hope this perspective and the proposed research plans help to inform future studies of mitochondrial adaptation in a manner that links genotypic changes to phenotypic adaptations, fitness, and reproductive isolation in natural systems, helping to clarify the importance of mitochondria in the formation and maintenance of biological diversity.
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Affiliation(s)
- M Tobler
- Division of Biology, Kansas State University, Manhattan, KS 66506, USA
| | - N Barts
- Division of Biology, Kansas State University, Manhattan, KS 66506, USA
| | - R Greenway
- Division of Biology, Kansas State University, Manhattan, KS 66506, USA
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20
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White NJ, Snook RR, Eyres I. The Past and Future of Experimental Speciation. Trends Ecol Evol 2019; 35:10-21. [PMID: 31522756 DOI: 10.1016/j.tree.2019.08.009] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 08/08/2019] [Accepted: 08/14/2019] [Indexed: 12/22/2022]
Abstract
Speciation is the result of evolutionary processes that generate barriers to gene flow between populations, facilitating reproductive isolation. Speciation is typically studied via theoretical models and snapshot tests in natural populations. Experimental speciation enables real-time direct tests of speciation theory and has been long touted as a critical complement to other approaches. We argue that, despite its promise to elucidate the evolution of reproductive isolation, experimental speciation has been underutilised and lags behind other contributions to speciation research. We review recent experiments and outline a framework for how experimental speciation can be implemented to address current outstanding questions that are otherwise challenging to answer. Greater uptake of this approach is necessary to rapidly advance understanding of speciation.
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Affiliation(s)
- Nathan J White
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
| | - Rhonda R Snook
- Department of Zoology, Stockholm University, Stockholm 106-91, Sweden
| | - Isobel Eyres
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.
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21
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Wollenberg Valero KC, Marshall JC, Bastiaans E, Caccone A, Camargo A, Morando M, Niemiller ML, Pabijan M, Russello MA, Sinervo B, Werneck FP, Sites JW, Wiens JJ, Steinfartz S. Patterns, Mechanisms and Genetics of Speciation in Reptiles and Amphibians. Genes (Basel) 2019; 10:genes10090646. [PMID: 31455040 PMCID: PMC6769790 DOI: 10.3390/genes10090646] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 07/21/2019] [Accepted: 08/05/2019] [Indexed: 12/22/2022] Open
Abstract
In this contribution, the aspects of reptile and amphibian speciation that emerged from research performed over the past decade are reviewed. First, this study assesses how patterns and processes of speciation depend on knowing the taxonomy of the group in question, and discuss how integrative taxonomy has contributed to speciation research in these groups. This study then reviews the research on different aspects of speciation in reptiles and amphibians, including biogeography and climatic niches, ecological speciation, the relationship between speciation rates and phenotypic traits, and genetics and genomics. Further, several case studies of speciation in reptiles and amphibians that exemplify many of these themes are discussed. These include studies of integrative taxonomy and biogeography in South American lizards, ecological speciation in European salamanders, speciation and phenotypic evolution in frogs and lizards. The final case study combines genomics and biogeography in tortoises. The field of amphibian and reptile speciation research has steadily moved forward from the assessment of geographic and ecological aspects, to incorporating other dimensions of speciation, such as genetic mechanisms and evolutionary forces. A higher degree of integration among all these dimensions emerges as a goal for future research.
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Affiliation(s)
| | - Jonathon C Marshall
- Department of Zoology, Weber State University, 1415 Edvalson Street, Dept. 2505, Ogden, UT 84401, USA
| | - Elizabeth Bastiaans
- Department of Biology, State University of New York, College at Oneonta, Oneonta, NY 13820, USA
| | - Adalgisa Caccone
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
| | - Arley Camargo
- Centro Universitario de Rivera, Universidad de la República, Ituzaingó 667, Rivera 40000, Uruguay
| | - Mariana Morando
- Instituto Patagónico para el Estudio de los Ecosistemas Continentales (IPEEC, CENPAT-CONICET) Bv. Brown 2915, Puerto Madryn U9120ACD, Argentina
| | - Matthew L Niemiller
- Department of Biological Sciences, The University of Alabama in Huntsville, Huntsville, AL 35899, USA
| | - Maciej Pabijan
- Department of Comparative Anatomy, Institute of Zoology and Biomedical Research, Jagiellonian University, ul. Gronostajowa 9, 30-387 Kraków, Poland
| | - Michael A Russello
- Department of Biology, University of British Columbia, Okanagan Campus, 3247 University Way, Kelowna, BC V1V 1V7, Canada
| | - Barry Sinervo
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Coastal Biology Building, 130 McAllister Way, Santa Cruz, CA 95060, USA
| | - Fernanda P Werneck
- Programa de Coleções Científicas Biológicas, Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus 69060-000, Brazil
| | - Jack W Sites
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Hull HU6 7RX, UK
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | - Sebastian Steinfartz
- Molecular Evolution and Systematics of Animals, Institute of Biology, University of Leipzig, Talstrasse 33, 04103 Leipzig, Germany
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22
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Dean LL, Magalhaes IS, Foote A, D'Agostino D, McGowan S, MacColl ADC. Admixture between ancient lineages, selection, and the formation of sympatric stickleback species-pairs. Mol Biol Evol 2019; 36:2481-2497. [PMID: 31297536 PMCID: PMC6805233 DOI: 10.1093/molbev/msz161] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2019] [Revised: 07/02/2019] [Accepted: 07/07/2019] [Indexed: 12/14/2022] Open
Abstract
Ecological speciation has become a popular model for the development and maintenance of reproductive isolation in closely related sympatric pairs of species or ecotypes. An implicit assumption has been that such pairs originate (possibly with gene flow) from a recent, genetically homogeneous ancestor. However, recent genomic data has revealed that currently sympatric taxa are often a result of secondary contact between ancestrally allopatric lineages. This has sparked an interest in the importance of initial hybridization upon secondary contact, with genomic re-analysis of classic examples of ecological speciation often implicating admixture in speciation. We describe a novel occurrence of unusually well-developed reproductive isolation in a model system for ecological speciation: the three-spined stickleback (Gasterosteus aculeatus), breeding sympatrically in multiple lagoons on the Scottish island of North Uist. Using morphological data, targeted genotyping and genome-wide single nucleotide polymorphism (SNP) data we show that lagoon resident and anadromous ecotypes are strongly reproductively isolated with an estimated hybridization rate of only ∼1%. We use palaeoecological and genetic data to test three hypotheses to explain the existence of these species-pairs. Our results suggest that recent, purely ecological speciation from a genetically homogeneous ancestor is probably not solely responsible for the evolution of species-pairs. Instead we reveal a complex colonisation history with multiple ancestral lineages contributing to the genetic composition of species-pairs, alongside strong disruptive selection. Our results imply a role for admixture upon secondary contact and are consistent with the recent suggestion that the genomic underpinning of ecological speciation often has an older, allopatric origin.
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Affiliation(s)
- Laura L Dean
- School of Life Sciences, The University of Nottingham, University Park, Nottingham, UK
| | - Isabel S Magalhaes
- School of Life Sciences, The University of Nottingham, University Park, Nottingham, UK.,Department of Life Sciences, Whitelands College, University of Roehampton, London, UK
| | - Andrew Foote
- Molecular Ecology and Fisheries Genetics Laboratory, Bangor University, Bangor, Gwynedd, UK
| | - Daniele D'Agostino
- School of Life Sciences, The University of Nottingham, University Park, Nottingham, UK
| | - Suzanne McGowan
- School of Geography, The University of Nottingham, University Park, Nottingham, UK
| | - Andrew D C MacColl
- School of Life Sciences, The University of Nottingham, University Park, Nottingham, UK
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23
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Villa SM, Altuna JC, Ruff JS, Beach AB, Mulvey LI, Poole EJ, Campbell HE, Johnson KP, Shapiro MD, Bush SE, Clayton DH. Rapid experimental evolution of reproductive isolation from a single natural population. Proc Natl Acad Sci U S A 2019; 116:13440-13445. [PMID: 31182608 PMCID: PMC6613143 DOI: 10.1073/pnas.1901247116] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Ecological speciation occurs when local adaptation generates reproductive isolation as a by-product of natural selection. Although ecological speciation is a fundamental source of diversification, the mechanistic link between natural selection and reproductive isolation remains poorly understood, especially in natural populations. Here, we show that experimental evolution of parasite body size over 4 y (approximately 60 generations) leads to reproductive isolation in natural populations of feather lice on birds. When lice are transferred to pigeons of different sizes, they rapidly evolve differences in body size that are correlated with host size. These differences in size trigger mechanical mating isolation between lice that are locally adapted to the different sized hosts. Size differences among lice also influence the outcome of competition between males for access to females. Thus, body size directly mediates reproductive isolation through its influence on both intersexual compatibility and intrasexual competition. Our results confirm that divergent natural selection acting on a single phenotypic trait can cause reproductive isolation to emerge from a single natural population in real time.
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Affiliation(s)
- Scott M Villa
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112;
| | - Juan C Altuna
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - James S Ruff
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Andrew B Beach
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Lane I Mulvey
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Erik J Poole
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Heidi E Campbell
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Kevin P Johnson
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois at Urbana-Champaign, Champaign, IL 61820
| | - Michael D Shapiro
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Sarah E Bush
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
| | - Dale H Clayton
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112
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24
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Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii. Heredity (Edinb) 2019; 124:223-235. [PMID: 31186532 DOI: 10.1038/s41437-019-0239-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 05/10/2019] [Accepted: 05/14/2019] [Indexed: 11/08/2022] Open
Abstract
Genetic and phenotypic analyses of independent secondary contact zones between certain pairs of divergent populations offer powerful opportunities to assess whether the consequences vary with different environmental backgrounds. Populations of the ice goby Leucopsarion petersii are distributed throughout the Japanese archipelago and comprise genetically and phenotypically divergent groups in the Japan Sea and the Pacific Ocean. In particular, populations in the Japan Sea have a larger body size and numbers of vertebrae than those in the Pacific Ocean. Herein, we performed integrated analyses of genotypes and phenotypes of two independent secondary contact zones and investigated their consequences. Population genetic analyses revealed asymmetric introgression of the mitochondrial genome of either lineage relative to little admixture of nuclear genomes in both secondary contact zones. On phenotype analyses, vertebral numbers were clearly explained by nuclear genomic ancestry in both secondary contact zones, whereas body size was not, suggesting that a little introgression of nuclear genes regulates body size. Actually, we observed biased introgression of a candidate gene, neuropeptide Y (NPY), which potentially controls body size in the ice goby. Moreover, the body size changes in the introgressed populations possibly affect the introgression patterns of mitochondrial genomes across these zones. Collectively, our results demonstrated that genomic and phenotypic consequences of secondary contact varied in marine variable environments.
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Hohenlohe PA, Magalhaes IS. The Population Genomics of Parallel Adaptation: Lessons from Threespine Stickleback. POPULATION GENOMICS 2019. [DOI: 10.1007/13836_2019_67] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Yang J, Zhou S, Huang D, He X. Phylogeography of two closely related species of Allium endemic to East Asia: Population evolution in response to climate oscillations. Ecol Evol 2018; 8:7986-7999. [PMID: 30250678 PMCID: PMC6145274 DOI: 10.1002/ece3.4338] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 06/05/2018] [Accepted: 06/06/2018] [Indexed: 11/30/2022] Open
Abstract
This study investigated the effects of climate oscillations on the evolution of two closely related Allium species, A. neriniflorum and A. tubiflorum. We sequenced three cp DNA (cpDNA) fragments (rps16, rpl32-trnL, and trnD-trnT, together approximately 2,500 bp in length) of two closely related Allium species, with samples from 367 individuals in 47 populations distributed across the total range of these species. The interspecific and intraspecific divergence times of the two species were in the Quaternary glaciation. The population divergence was high for the cpDNA variation, suggesting a significant phylogeographic structure (NST = 0.844, GST = 0.798, p < 0.05). Remarkable ecological differentiation was also revealed by Niche models and statistical analyses. Our results suggest the speciation event of the two species was triggered by violent climatic changes during the Quaternary glaciation.
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Affiliation(s)
- Jingtian Yang
- Key Laboratory of Bio‐Resources and Eco‐Environment of Ministry of EducationCollege of Life SciencesSichuan UniversityChengduChina
| | - Songdong Zhou
- Key Laboratory of Bio‐Resources and Eco‐Environment of Ministry of EducationCollege of Life SciencesSichuan UniversityChengduChina
| | - Deqing Huang
- Key Laboratory of Bio‐Resources and Eco‐Environment of Ministry of EducationCollege of Life SciencesSichuan UniversityChengduChina
| | - Xingjin He
- Key Laboratory of Bio‐Resources and Eco‐Environment of Ministry of EducationCollege of Life SciencesSichuan UniversityChengduChina
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Gibbons TC, McBryan TL, Schulte PM. Interactive effects of salinity and temperature acclimation on gill morphology and gene expression in threespine stickleback. Comp Biochem Physiol A Mol Integr Physiol 2018; 221:55-62. [DOI: 10.1016/j.cbpa.2018.03.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 03/16/2018] [Accepted: 03/21/2018] [Indexed: 02/08/2023]
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Miyazaki JI, Tamura T, Hida S, Sakai T. Local Introgression of Mitochondrial DNA in Eight-Barbel Loaches of the Genus Lefua (Balitoridae, Cypriniformes). Zoolog Sci 2018; 35:140-148. [PMID: 29623782 DOI: 10.2108/zs170135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The evolutionary history of eight-barbel loaches of the genus Lefua was investigated to resolve the faunal formation and evolutionary history of Japanese and East Asian freshwater fishes. In the present study, we found that seven Lefua specimens obtained from western Japan could not be assigned genetically to any population recognized so far, although they were morphologically and ecologically indistinguishable from Lefua sp 1. We tentatively designated the specimens as the Nihonkai population. Sequencing of the mitochondrial D-loop region showed that five specimens of the Nihonkai population were allied with the Kinki and Tokai populations of L. echigonia and other two with Lefua sp. 2, indicating a discrepancy between morphological-ecological and genetic traits. In order to determine whether the population experienced parallel evolution or introgression of mitochondrial DNA, we sequenced the nuclear ribosomal S7 subunit, and demonstrated that the Nihonkai population is included within Lefua sp. 1. These results indicate that the Nihonkai population can be identified as Lefua sp. 1, possessing introgressive mitochondrial DNA, and suggest that the evolutionary history and faunal formation of Japanese and East Asian freshwater fishes are more complicated than previously thought.
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Affiliation(s)
- Jun-Ichi Miyazaki
- 1 Faculty of Education, University of Yamanashi, Kofu, Yamanashi 400-8510, Japan
| | - Toshio Tamura
- 1 Faculty of Education, University of Yamanashi, Kofu, Yamanashi 400-8510, Japan
| | - Seiya Hida
- 1 Faculty of Education, University of Yamanashi, Kofu, Yamanashi 400-8510, Japan
| | - Takehiko Sakai
- 2 Research and Development, Ina Food Industry Co., Ltd., Ina, Nagano 399-4498, Japan
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Pires THS, Borghezan EA, Machado VN, Powell DL, Röpke CP, Oliveira C, Zuanon J, Farias IP. Testing Wallace's intuition: water type, reproductive isolation and divergence in an Amazonian fish. J Evol Biol 2018; 31:882-892. [PMID: 29577482 DOI: 10.1111/jeb.13272] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 03/14/2018] [Accepted: 03/16/2018] [Indexed: 01/20/2023]
Abstract
Alfred Russel Wallace proposed classifying Amazon rivers based on their colour and clarity: white, black and clear water. Wallace also proposed that black waters could mediate diversification and yield distinct fish species. Here, we bring evidence of speciation mediated by water type in the sailfin tetra (Crenuchus spilurus), a fish whose range encompasses rivers of very distinct hydrochemical conditions. Distribution of the two main lineages concords with Wallace's water types: one restricted to the acidic and nutrient-poor waters of the Negro River (herein Rio Negro lineage) and a second widespread throughout the remaining of the species' distribution (herein Amazonas lineage). These lineages occur over a very broad geographical range, suggesting that despite occurring in regions separated by thousands of kilometres, individuals of the distinct lineages fail to occupy each other's habitats, hundreds of metres apart and not separated by physical barrier. Reproductive isolation was assessed in isolated pairs exposed to black-water conditions. All pairs with at least one individual of the lineage not native to black waters showed significantly lower spawning success, suggesting that the water type affected the fitness and contributed to reproductive isolation. Our results endorse Wallace's intuition and highlight the importance of ecological factors in shaping diversity of the Amazon fish fauna.
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Affiliation(s)
- Tiago H S Pires
- Laboratório de Ecologia Comportamental e Evolutiva/LECE, Instituto Nacional de Pesquisas da Amazônia/INPA, Manaus, AM, Brazil
| | - Elio A Borghezan
- Laboratório de Ecologia Comportamental e Evolutiva/LECE, Instituto Nacional de Pesquisas da Amazônia/INPA, Manaus, AM, Brazil
| | - Valeria N Machado
- Laboratório de Evolução e Genética Animal/LEGAL, Universidade Federal do Amazonas/UFAM, Manaus, AM, Brazil
| | - Daniel L Powell
- Department of Biology, Texas A&M University. TAMU, College Station, TX, USA
| | - Cristhiana P Röpke
- Departamento de Ciências Pesqueiras, Faculdade de Ciências Agrárias, Universidade Federal do Amazonas, Manaus, AM, Brazil
| | - Claudio Oliveira
- Departamento de Morfologia, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, SP, Brazil
| | - Jansen Zuanon
- Laboratório de Ecologia Comportamental e Evolutiva/LECE, Instituto Nacional de Pesquisas da Amazônia/INPA, Manaus, AM, Brazil
| | - Izeni P Farias
- Laboratório de Evolução e Genética Animal/LEGAL, Universidade Federal do Amazonas/UFAM, Manaus, AM, Brazil
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30
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Singh BN, Singh R. Drosophila pallidosa: whether a separate species or a light form of D. ananassae. J Genet 2018; 96:1053-1059. [PMID: 29321367 DOI: 10.1007/s12041-017-0867-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Drosophila pallidosa belongs to the D. ananassae complex, which includes a total of 10 species. Earlier D. pallidosa was known as light form of D. ananassae but later it was described as a new species, sibling of D. ananassae. Both these terms, light form and sibling species were used by Futch. This makes the taxonomic status of D. pallidosa confusing. In this review we have tried to understand the actual status of this sibling species pair. Considering the similarities and dissimilarities, we suggest that D. pallidosa does not have the full status of a species, rather it is in the process of speciation, statu-nascendi. Our suggestion is strengthened by the fact that male genitalia are identical in both the cases and they lack postmating reproductive isolation since hybrids between them are normal and fully fertile.
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Affiliation(s)
- B N Singh
- Genetics Laboratory, Department of Zoology, Banaras Hindu University, Varanasi 221 005, India.
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31
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Higham TE, Rogers SM, Langerhans RB, Jamniczky HA, Lauder GV, Stewart WJ, Martin CH, Reznick DN. Speciation through the lens of biomechanics: locomotion, prey capture and reproductive isolation. Proc Biol Sci 2017; 283:rspb.2016.1294. [PMID: 27629033 DOI: 10.1098/rspb.2016.1294] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Accepted: 08/24/2016] [Indexed: 11/12/2022] Open
Abstract
Speciation is a multifaceted process that involves numerous aspects of the biological sciences and occurs for multiple reasons. Ecology plays a major role, including both abiotic and biotic factors. Whether populations experience similar or divergent ecological environments, they often adapt to local conditions through divergence in biomechanical traits. We investigate the role of biomechanics in speciation using fish predator-prey interactions, a primary driver of fitness for both predators and prey. We highlight specific groups of fishes, or specific species, that have been particularly valuable for understanding these dynamic interactions and offer the best opportunities for future studies that link genetic architecture to biomechanics and reproductive isolation (RI). In addition to emphasizing the key biomechanical techniques that will be instrumental, we also propose that the movement towards linking biomechanics and speciation will include (i) establishing the genetic basis of biomechanical traits, (ii) testing whether similar and divergent selection lead to biomechanical divergence, and (iii) testing whether/how biomechanical traits affect RI. Future investigations that examine speciation through the lens of biomechanics will propel our understanding of this key process.
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Affiliation(s)
- Timothy E Higham
- Department of Biology, University of California, Riverside, CA, USA
| | - Sean M Rogers
- Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada
| | - R Brian Langerhans
- Department of Biological Sciences and W.M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, NC, USA
| | - Heather A Jamniczky
- Department of Cell Biology and Anatomy, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada
| | - George V Lauder
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
| | | | | | - David N Reznick
- Department of Biology, University of California, Riverside, CA, USA
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32
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Low temperature and low salinity drive putatively adaptive growth differences in populations of threespine stickleback. Sci Rep 2017; 7:16766. [PMID: 29196675 PMCID: PMC5711929 DOI: 10.1038/s41598-017-16919-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Accepted: 11/17/2017] [Indexed: 12/31/2022] Open
Abstract
Colonisation can expose organisms to novel combinations of abiotic and biotic factors and drive adaptive divergence. Yet, studies investigating the interactive effects of multiple abiotic factors on the evolution of physiological traits remain rare. Here we examine the effects of low salinity, low temperature, and their interaction on the growth of three North American populations of threespine stickleback (Gasterosteus aculeatus). In north-temperate freshwater habitats, stickleback populations experience a combination of low salinity and low winter temperatures that are not experienced by the ancestral marine and anadromous populations. Here we show that both salinity and temperature, and their interaction, have stronger negative effects on marine and anadromous populations than a freshwater population. Freshwater stickleback showed only a ~20% reduction in specific growth rate when exposed to 4 °C, while marine and anadromous stickleback showed sharp declines (82% and 74% respectively) under these conditions. The modest decreases in growth in freshwater stickleback in fresh water in the cold strongly suggest that this population has the capacity for physiological compensation to offset the negative thermodynamic effects of low temperature on growth. These results are suggestive of adaptive evolution in response to the interactive effects of low salinity and low temperature during freshwater colonisation.
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33
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Servedio MR, Boughman JW. The Role of Sexual Selection in Local Adaptation and Speciation. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2017. [DOI: 10.1146/annurev-ecolsys-110316-022905] [Citation(s) in RCA: 135] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Sexual selection plays several intricate and complex roles in the related processes of local adaptation and speciation. In some cases sexual selection can promote these processes, but in others it can be inhibitory. We present theoretical and empirical evidence supporting these dual effects of sexual selection during local adaptation, allopatric speciation, and speciation with gene flow. Much of the empirical evidence for sexual selection promoting speciation is suggestive rather than conclusive; we present what would constitute strong evidence for sexual selection driving speciation. We conclude that although there is ample evidence that sexual selection contributes to the speciation process, it is very likely to do so only in concert with natural selection.
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Affiliation(s)
- Maria R. Servedio
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27516
| | - Janette W. Boughman
- Department of Integrative Biology, Michigan State University, East Lansing, Michigan 48824
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34
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35
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Rollins J. Body-size and growth-rate divergence among populations of threespine stickleback (Gasterosteus aculeatus) in Cook Inlet, Alaska, USA. CAN J ZOOL 2017. [DOI: 10.1139/cjz-2017-0092] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Body size is one of the most perceptible traits of organisms and is an important fitness proxy in evolutionary studies. Oceanic threespine stickleback (Gasterosteus aculeatus L., 1758) have colonized and adapted to numerous freshwater habitats throughout the Holarctic since the most recent glacial retreat, giving us natural “replicates” of both convergent and divergent evolution. I observed considerable body-size variation among 22 threespine stickleback populations within a small region surrounding Cook Inlet, Alaska, USA. Larger bodied populations tended to have bimodal size-frequency distributions, whereas most smaller bodied populations had unimodal distributions. Bimodal distributions suggested the presence of at least two age classes within large-bodied populations. I used a Bayesian approach to infer mean size of presumed age-1 and age-2+ fish from bimodal size-frequency distributions; I found significant differences in size among populations within ages and sexes, suggesting significant divergence in growth rate among populations. I did not find significant correlations between growth rates (age-specific size) and geographic distances among populations, drainage affiliation, or distance to the sea. Thus, historical processes like isolation by distance, gene flow, or recent common ancestry did not explain differences in growth among populations, suggesting a role for local adaptation or phenotypic plasticity in size divergence.
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Affiliation(s)
- J.L. Rollins
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794, USA
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794, USA
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36
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Xin T, Huang W, De Riek J, Zhang S, Ahmed S, Van Huylenbroeck J, Long C. Genetic diversity, population structure, and traditional culture of Camellia reticulata. Ecol Evol 2017; 7:8915-8926. [PMID: 29152187 PMCID: PMC5677478 DOI: 10.1002/ece3.3340] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Revised: 07/03/2017] [Accepted: 07/20/2017] [Indexed: 11/30/2022] Open
Abstract
Camellia reticulata is an arbor tree that has been cultivated in southwestern China by various sociolinguistic groups for esthetic purposes as well as to derive an edible seed oil. This study examined the influence of management, socio‐economic factors, and religion on the genetic diversity patterns of Camellia reticulata utilizing a combination of ethnobotanical and molecular genetic approaches. Semi‐structured interviews and key informant interviews were carried out with local communities in China's Yunnan Province. We collected plant material (n = 190 individuals) from five populations at study sites using single‐dose AFLP markers in order to access the genetic diversity within and between populations. A total of 387 DNA fragments were produced by four AFLP primer sets. All DNA fragments were found to be polymorphic (100%). A relatively high level of genetic diversity was revealed in C. reticulata samples at both the species (Hsp = 0.3397, Isp = 0.5236) and population (percentage of polymorphic loci = 85.63%, Hpop = 0.2937, Ipop = 0.4421) levels. Findings further revealed a relatively high degree of genetic diversity within C. reticulata populations (Analysis of Molecular Variance = 96.31%). The higher genetic diversity within populations than among populations of C. reticulata from different geographies is likely due to the cultural and social influences associated with its long cultivation history for esthetic and culinary purposes by diverse sociolinguistic groups. This study highlights the influence of human management, socio‐economic factors, and other cultural variables on the genetic and morphological diversity of C. reticulata at a regional level. Findings emphasize the important role of traditional culture on the conservation and utilization of plant genetic diversity.
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Affiliation(s)
- Tong Xin
- College of Life and Environmental Sciences Minzu University of China Beijing China
| | - Weijuan Huang
- College of Life and Environmental Sciences Minzu University of China Beijing China
| | - Jan De Riek
- Plant Sciences Unit Institute for Agricultural and Fisheries Research Melle Belgium
| | - Shuang Zhang
- College of Life and Environmental Sciences Minzu University of China Beijing China
| | - Selena Ahmed
- Department of Health & Human Development Montana State University Bozeman MT USA
| | | | - Chunlin Long
- College of Life and Environmental Sciences Minzu University of China Beijing China.,Kunming Institute of Botany Chinese Academy of Sciences Kunming China
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37
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Chan KO, Alexander AM, Grismer LL, Su YC, Grismer JL, Quah ESH, Brown RM. Species delimitation with gene flow: A methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs. Mol Ecol 2017; 26:5435-5450. [DOI: 10.1111/mec.14296] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Revised: 06/12/2017] [Accepted: 08/01/2017] [Indexed: 12/24/2022]
Affiliation(s)
- Kin Onn Chan
- Biodiversity Institute and Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence KS USA
| | - Alana M. Alexander
- Biodiversity Institute and Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence KS USA
| | - L. Lee Grismer
- Department of Biology; La Sierra University; Riverside CA USA
| | - Yong-Chao Su
- Department of Biomedical Science and Environmental Biology; Kaohsiung Medical University; Kaohsiung City Taiwan
| | - Jesse L. Grismer
- Department of Biological Sciences; Auburn University; Auburn AL USA
- La Kretz Center for Californian Conservation Science; Institute of the Environment and Sustainability; University of California Los Angeles; Los Angeles CA USA
| | - Evan S. H. Quah
- School of Biological Sciences; Universiti Sains Malaysia; Penang Malaysia
| | - Rafe M. Brown
- Biodiversity Institute and Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence KS USA
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38
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Ravinet M, Faria R, Butlin RK, Galindo J, Bierne N, Rafajlović M, Noor MAF, Mehlig B, Westram AM. Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow. J Evol Biol 2017; 30:1450-1477. [DOI: 10.1111/jeb.13047] [Citation(s) in RCA: 306] [Impact Index Per Article: 43.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Revised: 01/31/2017] [Accepted: 02/01/2017] [Indexed: 12/14/2022]
Affiliation(s)
- M. Ravinet
- Centre for Ecological and Evolutionary Synthesis; University of Oslo; Oslo Norway
- National Institute of Genetics; Mishima Shizuoka Japan
| | - R. Faria
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos; InBIO, Laboratório Associado; Universidade do Porto; Vairão Portugal
- Department of Experimental and Health Sciences; IBE, Institute of Evolutionary Biology (CSIC-UPF); Pompeu Fabra University; Barcelona Spain
- Department of Animal and Plant Sciences; University of Sheffield; Sheffield UK
| | - R. K. Butlin
- Department of Animal and Plant Sciences; University of Sheffield; Sheffield UK
- Department of Marine Sciences; Centre for Marine Evolutionary Biology; University of Gothenburg; Gothenburg Sweden
| | - J. Galindo
- Department of Biochemistry, Genetics and Immunology; University of Vigo; Vigo Spain
| | - N. Bierne
- CNRS; Université Montpellier; ISEM; Station Marine Sète France
| | - M. Rafajlović
- Department of Physics; University of Gothenburg; Gothenburg Sweden
| | | | - B. Mehlig
- Department of Physics; University of Gothenburg; Gothenburg Sweden
| | - A. M. Westram
- Department of Animal and Plant Sciences; University of Sheffield; Sheffield UK
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39
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Jarvis WMC, Comeau SM, Colborne SF, Robinson BW. Flexible mate choice may contribute to ecotype assortative mating in pumpkinseed sunfish (Lepomis gibbosus). J Evol Biol 2017; 30:1810-1820. [PMID: 28590579 DOI: 10.1111/jeb.13127] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Accepted: 06/01/2017] [Indexed: 11/30/2022]
Abstract
Gene flow is expected to limit adaptive divergence, but the ecological and behavioural factors that govern gene flow are still poorly understood, particularly at the earliest stages of population divergence. Reduced gene flow through mate choice (sexual isolation) can evolve even under conditions of subtle population divergence if intermediate phenotypes have reduced fitness. We indirectly tested the hypothesis that mate choice has evolved between coexisting littoral and pelagic ecotypes of polyphenic pumpkinseed sunfish (Lepomis gibbosus) that have diverged in morphology and resource use and where intermediate phenotypes have reduced performance. We assessed the ecotype of nesting males and females using stable isotope estimates of diet and a divergent male morphological trait, oral jaw width. We found positive assortative mating between ecotypes in a common spawning habitat along exposed lake shorelines, but contrary to expectations, assortative mating was variably expressed between two sampling years. Although the factors that influence variable assortative mating remain unclear, our results are consistent with mate choice being expressed by ecotypes. Despite being variably expressed, mate choice will reduce gene flow between ecotypes and could contribute to further adaptive divergence depending on its frequency and strength in the population. Our findings add to a growing body of evidence indicating mate choice behaviour can be a plastic trait, an idea that should be more explicitly considered in empirical studies of mate choice as well as conceptual frameworks of mate choice evolution and adaptive divergence.
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Affiliation(s)
- W M C Jarvis
- Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
| | - S M Comeau
- Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
| | - S F Colborne
- Great Lakes Institute for Environmental Research, University of Windsor, Windsor, ON, Canada
| | - B W Robinson
- Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
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40
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Ely CR, Wilson RE, Talbot SL. Genetic structure among greater white-fronted goose populations of the Pacific Flyway. Ecol Evol 2017; 7:2956-2968. [PMID: 28479995 PMCID: PMC5415542 DOI: 10.1002/ece3.2934] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Revised: 02/23/2017] [Accepted: 03/03/2017] [Indexed: 01/13/2023] Open
Abstract
An understanding of the genetic structure of populations in the wild is essential for long‐term conservation and stewardship in the face of environmental change. Knowledge of the present‐day distribution of genetic lineages (phylogeography) of a species is especially important for organisms that are exploited or utilize habitats that may be jeopardized by human intervention, including climate change. Here, we describe mitochondrial (mtDNA) and nuclear genetic (microsatellite) diversity among three populations of a migratory bird, the greater white‐fronted goose (Anser albifrons), which breeds discontinuously in western and southwestern Alaska and winters in the Pacific Flyway of North America. Significant genetic structure was evident at both marker types. All three populations were differentiated for mtDNA, whereas microsatellite analysis only differentiated geese from the Cook Inlet Basin. In sexual reproducing species, nonrandom mate selection, when occurring in concert with fine‐scale resource partitioning, can lead to phenotypic and genetic divergence as we observed in our study. If mate selection does not occur at the time of reproduction, which is not uncommon in long‐lived organisms, then mechanisms influencing the true availability of potential mates may be obscured, and the degree of genetic and phenotypic diversity may appear incongruous with presumed patterns of gene flow. Previous investigations revealed population‐specific behavioral, temporal, and spatial mechanisms that likely influence the amount of gene flow measured among greater white‐fronted goose populations. The degree of observed genetic structuring aligns well with our current understanding of population differences pertaining to seasonal movements, social structure, pairing behavior, and resource partitioning.
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Affiliation(s)
- Craig R Ely
- U.S. Geological Survey Alaska Science Center Anchorage AK USA
| | - Robert E Wilson
- U.S. Geological Survey Alaska Science Center Anchorage AK USA
| | - Sandra L Talbot
- U.S. Geological Survey Alaska Science Center Anchorage AK USA
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41
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Gibbons TC, Metzger DCH, Healy TM, Schulte PM. Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats. Mol Ecol 2017; 26:2711-2725. [DOI: 10.1111/mec.14065] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Revised: 02/01/2017] [Accepted: 02/06/2017] [Indexed: 12/13/2022]
Affiliation(s)
- Taylor C. Gibbons
- Biodiversity Research Centre and Department of Zoology; University of British Columbia; 6270 University Blvd Vancouver BC V6T 1Z4 Canada
| | - David C. H. Metzger
- Biodiversity Research Centre and Department of Zoology; University of British Columbia; 6270 University Blvd Vancouver BC V6T 1Z4 Canada
| | - Timothy M. Healy
- Biodiversity Research Centre and Department of Zoology; University of British Columbia; 6270 University Blvd Vancouver BC V6T 1Z4 Canada
| | - Patricia M. Schulte
- Biodiversity Research Centre and Department of Zoology; University of British Columbia; 6270 University Blvd Vancouver BC V6T 1Z4 Canada
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42
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Turissini DA, Comeault AA, Liu G, Lee YCG, Matute DR. The ability of Drosophila hybrids to locate food declines with parental divergence. Evolution 2017; 71:960-973. [PMID: 28085186 DOI: 10.1111/evo.13180] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Revised: 12/15/2016] [Accepted: 12/30/2016] [Indexed: 12/29/2022]
Abstract
Hybrids are generally less fit than their parental species, and the mechanisms underlying their fitness reductions can manifest through different traits. For example, hybrids can have physiological, behavioral, or ecological defects, and these defects can generate reproductive isolation between their parental species. However, the rate that mechanisms of postzygotic isolation other than hybrid sterility and inviability evolve has remained largely uninvestigated, despite isolated studies showing that behavioral defects in hybrids are not only possible but might be widespread. Here, we study a fundamental animal behavior-the ability of individuals to find food-and test the rate at which it breaks down in hybrids. We measured the ability of hybrids from 94 pairs of Drosophila species to find food and show that this ability decreases with increasing genetic divergence between the parental species and that male hybrids are more strongly (and negatively) affected than females. Our findings quantify the rate that hybrid dysfunction evolves across the diverse radiation of Drosophila and highlights the need for future investigations of the genetic and neurological mechanisms that affect a hybrid's ability to find a suitable substrate on which to feed and breed.
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Affiliation(s)
- David A Turissini
- Biology Department, University of North Carolina, Chapel Hill, North Carolina
| | - Aaron A Comeault
- Biology Department, University of North Carolina, Chapel Hill, North Carolina
| | - Geoffrey Liu
- Biology Department, University of North Carolina, Chapel Hill, North Carolina
| | - Yuh Chwen G Lee
- Department of Genome Biology, Lawrence Berkeley National Laboratory, Berkeley, California
| | - Daniel R Matute
- Biology Department, University of North Carolina, Chapel Hill, North Carolina
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Robertson S, Bradley JE, MacColl ADC. No evidence of local adaptation of immune responses to Gyrodactylus in three-spined stickleback (Gasterosteus aculeatus). FISH & SHELLFISH IMMUNOLOGY 2017; 60:275-281. [PMID: 27913248 DOI: 10.1016/j.fsi.2016.11.058] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Revised: 11/24/2016] [Accepted: 11/27/2016] [Indexed: 06/06/2023]
Abstract
Parasitism represents one of the most widespread lifestyles in the animal kingdom, with the potential to drive coevolutionary dynamics with their host population. Where hosts and parasites evolve together, we may find local adaptation. As one of the main host defences against infection, there is the potential for the immune response to be adapted to local parasites. In this study, we used the three-spined stickleback and its Gyrodactylus parasites to examine the extent of local adaptation of parasite infection dynamics and the immune response to infection. We took two geographically isolated host populations infected with two distinct Gyrodactylus species and performed a reciprocal cross-infection experiment in controlled laboratory conditions. Parasite burdens were monitored over the course of the infection, and individuals were sampled at multiple time points for immune gene expression analysis. We found large differences in virulence between parasite species, irrespective of host, and maladaptation of parasites to their sympatric host. The immune system responded to infection, with a decrease in expression of innate and Th1-type adaptive response genes in fish infected with the less virulent parasite, representing a marker of a possible resistance mechanism. There was no evidence of local adaptation in immune gene expression levels. Our results add to the growing understanding of the extent of host-parasite local adaptation, and demonstrate a systemic immune response during infection with a common ectoparasite. Further immunological studies using the stickleback-Gyrodactylus system can continue to contribute to our understanding of the function of the immune response in natural populations.
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Affiliation(s)
- Shaun Robertson
- School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom.
| | - Janette E Bradley
- School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| | - Andrew D C MacColl
- School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
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Berner D, Ammann M, Spencer E, Rüegg A, Lüscher D, Moser D. Sexual isolation promotes divergence between parapatric lake and stream stickleback. J Evol Biol 2016; 30:401-411. [PMID: 27862535 DOI: 10.1111/jeb.13016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Accepted: 11/07/2016] [Indexed: 12/26/2022]
Abstract
Speciation can be initiated by adaptive divergence between populations in ecologically different habitats, but how sexually based reproductive barriers contribute to this process is less well understood. We here test for sexual isolation between ecotypes of threespine stickleback fish residing in adjacent lake and stream habitats in the Lake Constance basin, Central Europe. Mating trials exposing females to pairings of territorial lake and stream males in outdoor mesocosms allowing for natural reproductive behaviour reveal that mating occurs preferentially between partners of the same ecotype. Compared to random mating, this sexual barrier reduces gene flow between the ecotypes by some 36%. This relatively modest strength of sexual isolation is surprising because comparing the males between the two ecotypes shows striking differentiation in traits generally considered relevant to reproductive behaviour (body size, breeding coloration, nest size). Analysing size differences among the individuals in the mating trials further indicates that assortative mating is not related to ecotype differences in body size. Overall, we demonstrate that sexually based reproductive isolation promotes divergence in lake-stream stickleback along with other known reproductive barriers, but we also caution against inferring strong sexual isolation from the observation of strong population divergence in sexually relevant traits.
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Affiliation(s)
- D Berner
- Zoological Institute, University of Basel, Basel, Switzerland
| | - M Ammann
- Zoological Institute, University of Basel, Basel, Switzerland
| | - E Spencer
- Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, UK
| | - A Rüegg
- Zoological Institute, University of Basel, Basel, Switzerland
| | - D Lüscher
- Zoological Institute, University of Basel, Basel, Switzerland
| | - D Moser
- Zoological Institute, University of Basel, Basel, Switzerland
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45
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Hanson D, Moore JS, Taylor EB, Barrett RDH, Hendry AP. Assessing reproductive isolation using a contact zone between parapatric lake-stream stickleback ecotypes. J Evol Biol 2016; 29:2491-2501. [PMID: 27633750 DOI: 10.1111/jeb.12978] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2016] [Accepted: 09/02/2016] [Indexed: 01/09/2023]
Abstract
Ecological speciation occurs when populations evolve reproductive isolation as a result of divergent natural selection. This isolation can be influenced by many potential reproductive barriers, including selection against hybrids, selection against migrants and assortative mating. How and when these barriers act and interact in nature is understood for relatively few empirical systems. We used a mark-recapture experiment in a contact zone between lake and stream three-spined sticklebacks (Gasterosteus aculeatus, Linnaeus) to evaluate the occurrence of hybrids (allowing inferences about mating isolation), the interannual survival of hybrids (allowing inferences about selection against hybrids) and the shift in lake-like vs. stream-like characteristics (allowing inferences about selection against migrants). Genetic and morphological data suggest the occurrence of hybrids and no selection against hybrids in general, a result contradictory to a number of other studies of sticklebacks. However, we did find selection against more lake-like individuals, suggesting a barrier to gene flow from the lake into the stream. Combined with previous work on this system, our results suggest that multiple (most weakly and often asymmetric) barriers must be combining to yield substantial restrictions on gene flow. This work provides evidence of a reproductive barrier in lake-stream sticklebacks and highlights the value of assessing multiple reproductive barriers in natural contexts.
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Affiliation(s)
- D Hanson
- Redpath Museum and Department of Biology, McGill University, Montreal, QC, Canada
| | - J-S Moore
- Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC, Canada
| | - E B Taylor
- Department of Zoology and Beaty Biodiversity Museum, University of British Columbia, Vancouver, BC, Canada
| | - R D H Barrett
- Redpath Museum and Department of Biology, McGill University, Montreal, QC, Canada
| | - A P Hendry
- Redpath Museum and Department of Biology, McGill University, Montreal, QC, Canada
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Martin CH. The cryptic origins of evolutionary novelty: 1000-fold faster trophic diversification rates without increased ecological opportunity or hybrid swarm. Evolution 2016; 70:2504-2519. [PMID: 27593215 DOI: 10.1111/evo.13046] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 08/10/2016] [Accepted: 08/18/2016] [Indexed: 01/15/2023]
Abstract
Ecological opportunity is frequently proposed as the sole ingredient for adaptive radiation into novel niches. An additional trigger may be genome-wide hybridization resulting from "hybrid swarm." However, these hypotheses have been difficult to test due to the rarity of comparable control environments lacking adaptive radiations. Here I exploit such a pattern in microendemic radiations of Caribbean pupfishes. I show that a sympatric three species radiation on San Salvador Island, Bahamas diversified 1445 times faster than neighboring islands in jaw length due to the evolution of a novel scale-eating adaptive zone from a generalist ancestral niche. I then sampled 22 generalist populations on seven neighboring islands and measured morphological diversity, stomach content diversity, dietary isotopic diversity, genetic diversity, lake/island areas, macroalgae richness, and Caribbean-wide patterns of gene flow. None of these standard metrics of ecological opportunity or gene flow were associated with adaptive radiation, except for slight increases in macroalgae richness. Thus, exceptional trophic diversification is highly localized despite myriad generalist populations in comparable environmental and genetic backgrounds. This study provides a strong counterexample to the ecological and hybrid swarm theories of adaptive radiation and suggests that diversification of novel specialists on a sparse fitness landscape is constrained by more than ecological opportunity and gene flow.
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Affiliation(s)
- Christopher H Martin
- Department of Biology, University of North Carolina at Chapel Hill, Campus Box 3280, 120 South Road, Chapel Hill, North Carolina, 27599-3280.
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Kokita T, Takahashi S, Kinoshita M. Evolution of gigantism and size-based female mate choice in ice goby ( Leucopsarion petersii) populations in a semi-enclosed sea basin. Biol J Linn Soc Lond 2016. [DOI: 10.1111/bij.12900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tomoyuki Kokita
- Department of Marine Bioscience; Fukui Prefectural University; Obama Fukui 917-0003 Japan
| | - Sayaka Takahashi
- Department of Marine Bioscience; Fukui Prefectural University; Obama Fukui 917-0003 Japan
| | - Masaki Kinoshita
- Department of Marine Bioscience; Fukui Prefectural University; Obama Fukui 917-0003 Japan
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Cenzer ML. Adaptation to an invasive host is driving the loss of a native ecotype. Evolution 2016; 70:2296-2307. [PMID: 27508331 DOI: 10.1111/evo.13023] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2016] [Revised: 07/07/2016] [Accepted: 07/12/2016] [Indexed: 02/01/2023]
Abstract
Locally adapted populations are often used as model systems for the early stages of ecological speciation, but most of these young divergent populations will never become complete species. The maintenance of local adaptation relies on the strength of natural selection overwhelming the homogenizing effects of gene flow; however, this balance may be readily upset in changing environments. Here I show that soapberry bugs (Jadera haematoloma) have lost adaptations to their native host plant (Cardiospermum corindum) and are regionally specializing on an invasive host (Koelreuteria elegans), collapsing a classic and well-documented example of local adaptation. All populations that were adapted to the native host-including those still found on that host today-are now better adapted to the invasive host in multiple phenotypes. Weak differentiation remains in two traits, suggesting that homogenization across the region is incomplete. This study highlights the potential for adaptation to invasive species to disrupt native communities by swamping adaptation to native conditions through maladaptive gene flow.
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Affiliation(s)
- Meredith L Cenzer
- Department of Entomology, University of California, Davis, California, 95616.
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Pfennig KS. Reinforcement as an initiator of population divergence and speciation. Curr Zool 2016; 62:145-154. [PMID: 29491902 PMCID: PMC5804236 DOI: 10.1093/cz/zow033] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2015] [Accepted: 12/29/2015] [Indexed: 02/02/2023] Open
Abstract
When hybridization results in reduced fitness, natural selection is expected to favor the evolution of traits that minimize the likelihood of hybridizing in the first place. This process, termed reinforcement (or, more generally, reproductive character displacement), thereby contributes to the evolution of enhanced reproductive isolation between hybridizing groups. By enhancing reproductive isolation in this way, reinforcement plays an important role in the final stages of speciation. However, reinforcement can also contribute to the early stages of speciation. Specifically, because selection to avoid hybridization occurs only in sympatric populations, the unfolding of reinforcement can lead to the evolution of traits in sympatric populations that reduce reproduction between conspecifics in sympatry versus those in allopatry. Thus, reinforcement between species can lead to reproductive isolation—and possibly speciation—between populations in sympatry versus those in allopatry or among different sympatric populations. Here, I describe how this process can occur, the conditions under which it is most likely to occur, and the empirical data needed to evaluate the hypothesis that reinforcement can initiate speciation.
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Affiliation(s)
- Karin S Pfennig
- Department of Biology, University of North Carolina, Chapel Hill, NC 27599-3280, USA
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50
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Marques DA, Lucek K, Meier JI, Mwaiko S, Wagner CE, Excoffier L, Seehausen O. Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS Genet 2016; 12:e1005887. [PMID: 26925837 PMCID: PMC4771382 DOI: 10.1371/journal.pgen.1005887] [Citation(s) in RCA: 146] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2015] [Accepted: 01/29/2016] [Indexed: 01/18/2023] Open
Abstract
Ecological speciation is the process by which reproductively isolated populations emerge as a consequence of divergent natural or ecologically-mediated sexual selection. Most genomic studies of ecological speciation have investigated allopatric populations, making it difficult to infer reproductive isolation. The few studies on sympatric ecotypes have focused on advanced stages of the speciation process after thousands of generations of divergence. As a consequence, we still do not know what genomic signatures of the early onset of ecological speciation look like. Here, we examined genomic differentiation among migratory lake and resident stream ecotypes of threespine stickleback reproducing in sympatry in one stream, and in parapatry in another stream. Importantly, these ecotypes started diverging less than 150 years ago. We obtained 34,756 SNPs with restriction-site associated DNA sequencing and identified genomic islands of differentiation using a Hidden Markov Model approach. Consistent with incipient ecological speciation, we found significant genomic differentiation between ecotypes both in sympatry and parapatry. Of 19 islands of differentiation resisting gene flow in sympatry, all were also differentiated in parapatry and were thus likely driven by divergent selection among habitats. These islands clustered in quantitative trait loci controlling divergent traits among the ecotypes, many of them concentrated in one region with low to intermediate recombination. Our findings suggest that adaptive genomic differentiation at many genetic loci can arise and persist in sympatry at the very early stage of ecotype divergence, and that the genomic architecture of adaptation may facilitate this.
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Affiliation(s)
- David A. Marques
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- * E-mail:
| | - Kay Lucek
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Department of Animal and Plant Science, University of Sheffield, Sheffield, United Kingdom
| | - Joana I. Meier
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Salome Mwaiko
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
| | - Catherine E. Wagner
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Biodiversity Institute, University of Wyoming, Wyoming, United States of America
| | - Laurent Excoffier
- Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Ole Seehausen
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
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