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For: Hua ZS, Wang YL, Evans PN, Qu YN, Goh KM, Rao YZ, Qi YL, Li YX, Huang MJ, Jiao JY, Chen YT, Mao YP, Shu WS, Hozzein W, Hedlund BP, Tyson GW, Zhang T, Li WJ. Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea. Nat Commun 2019;10:4574. [PMID: 31594929 PMCID: PMC6783470 DOI: 10.1038/s41467-019-12574-y] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Accepted: 09/12/2019] [Indexed: 01/10/2023]  Open
Number Cited by Other Article(s)
1
Pandi-Perumal SR, Saravanan KM, Paul S, Warren Spence D, Chidambaram SB. Studying sleep orthologs in Epsilonproteobacteria through an evolutionary lens: investigating sleep mysteries through phylogenomics. World J Microbiol Biotechnol 2025;41:154. [PMID: 40289222 DOI: 10.1007/s11274-025-04361-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Accepted: 04/09/2025] [Indexed: 04/30/2025]
2
Ramírez-Amador F, Paul S, Kumar A, Lorent C, Keller S, Bohn S, Nguyen T, Lometto S, Vlegels D, Kahnt J, Deobald D, Abendroth F, Vázquez O, Hochberg G, Scheller S, Stripp ST, Schuller JM. Structure of the ATP-driven methyl-coenzyme M reductase activation complex. Nature 2025:10.1038/s41586-025-08890-7. [PMID: 40240609 DOI: 10.1038/s41586-025-08890-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Accepted: 03/12/2025] [Indexed: 04/18/2025]
3
Shao B, Xie YG, Zhang L, Ruan Y, Liang B, Zhang R, Xu X, Wang W, Lin Z, Pei X, Wang X, Zhao L, Zhou X, Wu X, Xing D, Wang A, Lee DJ, Ren N, Canfield DE, Hedlund BP, Hua ZS, Chen C. Versatile nitrate-respiring heterotrophs are previously concealed contributors to sulfur cycle. Nat Commun 2025;16:1202. [PMID: 39885140 PMCID: PMC11782648 DOI: 10.1038/s41467-025-56588-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 01/22/2025] [Indexed: 02/01/2025]  Open
4
Yu H, Liu S, Zhang D, Hu R, Chen P, Liu H, Zhou Q, Tan W, Hu N, He Z, Ding D, Yan Q. Specific Enrichment of arsM-Carrying Microorganisms with Nitrogen Fixation and Dissimilatory Nitrate Reduction Function Enhances Arsenic Methylation in Plant Rhizosphere Soil. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:1647-1660. [PMID: 39810418 DOI: 10.1021/acs.est.4c10242] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
5
Qi YL, Zhang HT, Li M, Li WJ, Hua ZS. Recovery of nearly 3,000 archaeal genomes from 152 terrestrial geothermal spring metagenomes. Sci Data 2025;12:151. [PMID: 39865091 PMCID: PMC11770067 DOI: 10.1038/s41597-025-04493-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 01/16/2025] [Indexed: 01/28/2025]  Open
6
Wu D, Seshadri R, Kyrpides NC, Ivanova NN. A metagenomic perspective on the microbial prokaryotic genome census. SCIENCE ADVANCES 2025;11:eadq2166. [PMID: 39823337 PMCID: PMC11740963 DOI: 10.1126/sciadv.adq2166] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Accepted: 12/17/2024] [Indexed: 01/19/2025]
7
Ni L, Wu J, Dang H, Duarte CM, Feng K, Deng Y, Zheng D, Zhang D. Stand age-related effects of mangrove on archaeal methanogenesis in sediments: Community assembly and co-occurrence patterns. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;954:176596. [PMID: 39357754 DOI: 10.1016/j.scitotenv.2024.176596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Revised: 09/19/2024] [Accepted: 09/26/2024] [Indexed: 10/04/2024]
8
Chen SC, Chen S, Musat N, Kümmel S, Ji J, Lund MB, Gilbert A, Lechtenfeld OJ, Richnow HH, Musat F. Back flux during anaerobic oxidation of butane support archaea-mediated alkanogenesis. Nat Commun 2024;15:9628. [PMID: 39511174 PMCID: PMC11543930 DOI: 10.1038/s41467-024-53932-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Accepted: 10/25/2024] [Indexed: 11/15/2024]  Open
9
Li Y, Yan X, Qin T, Gan Y, Li N, Zheng C. Applicability of blue algae as an activator for microbial enhanced coal bed methane technologies. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;370:123063. [PMID: 39461147 DOI: 10.1016/j.jenvman.2024.123063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 10/19/2024] [Accepted: 10/21/2024] [Indexed: 10/29/2024]
10
Liu L, Lian ZH, Lv AP, Salam N, Zhang JC, Li MM, Sun WM, Tan S, Luo ZH, Gao L, Yuan Y, Ming YZ, OuYang YT, Li YX, Liu ZT, Hu CJ, Chen Y, Hua ZS, Shu WS, Hedlund BP, Li WJ, Jiao JY. Insights into chemoautotrophic traits of a prevalent bacterial phylum CSP1-3, herein Sysuimicrobiota. Natl Sci Rev 2024;11:nwae378. [PMID: 39611041 PMCID: PMC11604079 DOI: 10.1093/nsr/nwae378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 10/11/2024] [Accepted: 10/22/2024] [Indexed: 11/30/2024]  Open
11
Zhang L, Chen Q, Zeng S, Deng Z, Liu Z, Li X, Hou Q, Zhou R, Bao S, Hou D, Weng S, He J, Huang Z. Succeed to culture a novel lineage symbiotic bacterium of Mollicutes which widely found in arthropods intestine uncovers the potential double-edged sword ecological function. Front Microbiol 2024;15:1458382. [PMID: 39493855 PMCID: PMC11527720 DOI: 10.3389/fmicb.2024.1458382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 09/20/2024] [Indexed: 11/05/2024]  Open
12
Han JR, Li S, Li WJ, Dong L. Mining microbial and metabolic dark matter in extreme environments: a roadmap for harnessing the power of multi-omics data. ADVANCED BIOTECHNOLOGY 2024;2:26. [PMID: 39883228 PMCID: PMC11740847 DOI: 10.1007/s44307-024-00034-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/18/2024] [Accepted: 07/26/2024] [Indexed: 01/31/2025]
13
Yu T, Fu L, Wang Y, Dong Y, Chen Y, Wegener G, Cheng L, Wang F. Thermophilic Hadarchaeota grow on long-chain alkanes in syntrophy with methanogens. Nat Commun 2024;15:6560. [PMID: 39095478 PMCID: PMC11297162 DOI: 10.1038/s41467-024-50883-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 07/22/2024] [Indexed: 08/04/2024]  Open
14
Tan S, Liu L, Jiao JY, Li MM, Hu CJ, Lv AP, Qi YL, Li YX, Rao YZ, Qu YN, Jiang HC, Soo RM, Evans PN, Hua ZS, Li WJ. Exploring the Origins and Evolution of Oxygenic and Anoxygenic Photosynthesis in Deeply Branched Cyanobacteriota. Mol Biol Evol 2024;41:msae151. [PMID: 39041196 PMCID: PMC11304991 DOI: 10.1093/molbev/msae151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 06/16/2024] [Accepted: 07/17/2024] [Indexed: 07/24/2024]  Open
15
Kohtz AJ, Petrosian N, Krukenberg V, Jay ZJ, Pilhofer M, Hatzenpichler R. Cultivation and visualization of a methanogen of the phylum Thermoproteota. Nature 2024;632:1118-1123. [PMID: 39048824 DOI: 10.1038/s41586-024-07631-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 05/30/2024] [Indexed: 07/27/2024]
16
Krukenberg V, Kohtz AJ, Jay ZJ, Hatzenpichler R. Methyl-reducing methanogenesis by a thermophilic culture of Korarchaeia. Nature 2024;632:1131-1136. [PMID: 39048017 DOI: 10.1038/s41586-024-07829-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 07/15/2024] [Indexed: 07/27/2024]
17
Wu K, Zhou L, Tahon G, Liu L, Li J, Zhang J, Zheng F, Deng C, Han W, Bai L, Fu L, Dong X, Zhang C, Ettema TJG, Sousa DZ, Cheng L. Isolation of a methyl-reducing methanogen outside the Euryarchaeota. Nature 2024;632:1124-1130. [PMID: 39048829 DOI: 10.1038/s41586-024-07728-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Accepted: 06/18/2024] [Indexed: 07/27/2024]
18
Herrera G, Castañeda S, Arboleda JC, Pérez-Jaramillo JE, Patarroyo MA, Ramírez JD, Muñoz M. Metagenome-assembled genomes (MAGs) suggest an acetate-driven protective role in gut microbiota disrupted by Clostridioides difficile. Microbiol Res 2024;285:127739. [PMID: 38763016 DOI: 10.1016/j.micres.2024.127739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 03/20/2024] [Accepted: 04/22/2024] [Indexed: 05/21/2024]
19
Jiao JY, Ma SC, Salam N, Zhou Z, Lian ZH, Fu L, Chen Y, Peng CH, OuYang YT, Fan H, Li L, Yi Y, Zhang JY, Wang JY, Liu L, Gao L, Oren A, Woyke T, Dodsworth JA, Hedlund BP, Li WJ, Cheng L. Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. MICROBIOME 2024;12:123. [PMID: 38971798 PMCID: PMC11227167 DOI: 10.1186/s40168-024-01836-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 05/13/2024] [Indexed: 07/08/2024]
20
Ma Y, Qu Y, Yao X, Xia C, Lv M, Lin X, Zhang L, Zhang M, Hu B. Unveiling the unique role of iron in the metabolism of methanogens: A review. ENVIRONMENTAL RESEARCH 2024;250:118495. [PMID: 38367837 DOI: 10.1016/j.envres.2024.118495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 02/06/2024] [Accepted: 02/13/2024] [Indexed: 02/19/2024]
21
Zhang X, Liu B, Xue S, Chen J, Zheng C, Yang Y, Zhou T, Wang J, Zhang J. Mechanisms of secondary biogenic coalbed methane formation in bituminous coal seams: a joint experimental and multi-omics study. Arch Microbiol 2024;206:263. [PMID: 38753104 DOI: 10.1007/s00203-024-03990-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 04/18/2024] [Accepted: 05/01/2024] [Indexed: 06/18/2024]
22
Qi YL, Chen YT, Xie YG, Li YX, Rao YZ, Li MM, Xie QJ, Cao XR, Chen L, Qu YN, Yuan ZX, Xiao ZC, Lu L, Jiao JY, Shu WS, Li WJ, Hedlund BP, Hua ZS. Analysis of nearly 3000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes. Nat Commun 2024;15:4066. [PMID: 38744885 PMCID: PMC11094006 DOI: 10.1038/s41467-024-48498-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 05/02/2024] [Indexed: 05/16/2024]  Open
23
Qu Y, Zhao Y, Yao X, Wang J, Liu Z, Hong Y, Zheng P, Wang L, Hu B. Salinity causes differences in stratigraphic methane sources and sinks. ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY 2024;19:100334. [PMID: 38046178 PMCID: PMC10692758 DOI: 10.1016/j.ese.2023.100334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 10/09/2023] [Accepted: 10/12/2023] [Indexed: 12/05/2023]
24
Chen KH, Feng J, Bodelier PLE, Yang Z, Huang Q, Delgado-Baquerizo M, Cai P, Tan W, Liu YR. Metabolic coupling between soil aerobic methanotrophs and denitrifiers in rice paddy fields. Nat Commun 2024;15:3471. [PMID: 38658559 PMCID: PMC11043409 DOI: 10.1038/s41467-024-47827-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 04/15/2024] [Indexed: 04/26/2024]  Open
25
Peng W, Lu J, Kuang J, Tang R, Guan F, Xie K, Zhou L, Yuan Y. Enhancement of hydrogenotrophic methanogenesis for methane production by nano zero-valent iron in soils. ENVIRONMENTAL RESEARCH 2024;247:118232. [PMID: 38262517 DOI: 10.1016/j.envres.2024.118232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 01/12/2024] [Accepted: 01/16/2024] [Indexed: 01/25/2024]
26
Zhang Z, Bo L, Wang S, Li C, Zhang X, Xue B, Yang X, He X, Shen Z, Qiu Z, Zhao C, Wang J. Multidrug-resistant plasmid RP4 inhibits the nitrogen removal capacity of ammonia-oxidizing archaea, ammonia-oxidizing bacteria, and comammox in activated sludge. ENVIRONMENTAL RESEARCH 2024;242:117739. [PMID: 38007076 DOI: 10.1016/j.envres.2023.117739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/09/2023] [Accepted: 11/17/2023] [Indexed: 11/27/2023]
27
Xie F, Zhao S, Zhan X, Zhou Y, Li Y, Zhu W, Pope PB, Attwood GT, Jin W, Mao S. Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions. Genome Biol 2024;25:32. [PMID: 38263062 PMCID: PMC10804542 DOI: 10.1186/s13059-024-03167-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 01/07/2024] [Indexed: 01/25/2024]  Open
28
Zhao D, Zhang S, Chen J, Zhao J, An P, Xiang H. Members of the class Candidatus Ordosarchaeia imply an alternative evolutionary scenario from methanogens to haloarchaea. THE ISME JOURNAL 2024;18:wrad033. [PMID: 38366248 PMCID: PMC10873845 DOI: 10.1093/ismejo/wrad033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Revised: 12/05/2023] [Accepted: 12/19/2023] [Indexed: 02/18/2024]
29
Benito Merino D, Lipp JS, Borrel G, Boetius A, Wegener G. Anaerobic hexadecane degradation by a thermophilic Hadarchaeon from Guaymas Basin. THE ISME JOURNAL 2024;18:wrad004. [PMID: 38365230 PMCID: PMC10811742 DOI: 10.1093/ismejo/wrad004] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 11/06/2023] [Indexed: 02/18/2024]
30
Lynes MM, Jay ZJ, Kohtz AJ, Hatzenpichler R. Methylotrophic methanogenesis in the Archaeoglobi revealed by cultivation of Ca. Methanoglobus hypatiae from a Yellowstone hot spring. THE ISME JOURNAL 2024;18:wrae026. [PMID: 38452205 PMCID: PMC10945360 DOI: 10.1093/ismejo/wrae026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 01/09/2024] [Accepted: 02/08/2024] [Indexed: 03/09/2024]
31
Gao L, Liu L, Lv AP, Fu L, Lian ZH, Nunoura T, Hedlund BP, Xu QY, Wu D, Yang J, Ali M, Li MM, Liu YH, Antunes A, Jiang HC, Cheng L, Jiao JY, Li WJ, Fang BZ. Reversed oxidative TCA (roTCA) for carbon fixation by an Acidimicrobiia strain from a saline lake. THE ISME JOURNAL 2024;18:wrae147. [PMID: 39073917 PMCID: PMC11697166 DOI: 10.1093/ismejo/wrae147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 07/19/2024] [Accepted: 07/27/2024] [Indexed: 07/31/2024]
32
Luo ZH, Li Q, Xie YG, Lv AP, Qi YL, Li MM, Qu YN, Liu ZT, Li YX, Rao YZ, Jiao JY, Liu L, Narsing Rao MP, Hedlund BP, Evans PN, Fang Y, Shu WS, Huang LN, Li WJ, Hua ZS. Temperature, pH, and oxygen availability contributed to the functional differentiation of ancient Nitrososphaeria. THE ISME JOURNAL 2024;18:wrad031. [PMID: 38365241 PMCID: PMC10833072 DOI: 10.1093/ismejo/wrad031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 12/13/2023] [Accepted: 12/13/2023] [Indexed: 02/18/2024]
33
Zhang Z, Liu T, Li X, Ye Q, Bangash HI, Zheng J, Peng N. Metagenome-assembled genomes reveal carbohydrate degradation and element metabolism of microorganisms inhabiting Tengchong hot springs, China. ENVIRONMENTAL RESEARCH 2023;238:117144. [PMID: 37716381 DOI: 10.1016/j.envres.2023.117144] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 08/31/2023] [Accepted: 09/13/2023] [Indexed: 09/18/2023]
34
Vulcano F, Hribovšek P, Denny EO, Steen IH, Stokke R. Potential for homoacetogenesis via the Wood-Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents. ENVIRONMENTAL MICROBIOLOGY REPORTS 2023;15:698-707. [PMID: 37218095 PMCID: PMC10667645 DOI: 10.1111/1758-2229.13168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 05/05/2023] [Indexed: 05/24/2023]
35
Ma B, Lu C, Wang Y, Yu J, Zhao K, Xue R, Ren H, Lv X, Pan R, Zhang J, Zhu Y, Xu J. A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources. Nat Commun 2023;14:7318. [PMID: 37951952 PMCID: PMC10640626 DOI: 10.1038/s41467-023-43000-z] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 10/27/2023] [Indexed: 11/14/2023]  Open
36
Medvedeva S, Borrel G, Krupovic M, Gribaldo S. A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment. Nat Microbiol 2023;8:2170-2182. [PMID: 37749252 DOI: 10.1038/s41564-023-01485-w] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 08/30/2023] [Indexed: 09/27/2023]
37
Buessecker S, Chadwick GL, Quan ME, Hedlund BP, Dodsworth JA, Dekas AE. Mcr-dependent methanogenesis in Archaeoglobaceae enriched from a terrestrial hot spring. THE ISME JOURNAL 2023;17:1649-1659. [PMID: 37452096 PMCID: PMC10504316 DOI: 10.1038/s41396-023-01472-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 06/21/2023] [Accepted: 06/26/2023] [Indexed: 07/18/2023]
38
Zhang Y, Liu T, Li MM, Hua ZS, Evans P, Qu Y, Tan S, Zheng M, Lu H, Jiao JY, Lücker S, Daims H, Li WJ, Guo J. Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. THE ISME JOURNAL 2023;17:993-1003. [PMID: 37069235 PMCID: PMC10284858 DOI: 10.1038/s41396-023-01409-w] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 03/29/2023] [Accepted: 03/31/2023] [Indexed: 04/19/2023]
39
Zehnle H, Laso-Pérez R, Lipp J, Riedel D, Benito Merino D, Teske A, Wegener G. Candidatus Alkanophaga archaea from Guaymas Basin hydrothermal vent sediment oxidize petroleum alkanes. Nat Microbiol 2023;8:1199-1212. [PMID: 37264141 PMCID: PMC10322722 DOI: 10.1038/s41564-023-01400-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 04/28/2023] [Indexed: 06/03/2023]
40
Wang J, Qu YN, Evans PN, Guo Q, Zhou F, Nie M, Jin Q, Zhang Y, Zhai X, Zhou M, Yu Z, Fu QL, Xie YG, Hedlund BP, Li WJ, Hua ZS, Wang Z, Wang Y. Evidence for nontraditional mcr-containing archaea contributing to biological methanogenesis in geothermal springs. SCIENCE ADVANCES 2023;9:eadg6004. [PMID: 37379385 DOI: 10.1126/sciadv.adg6004] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 05/24/2023] [Indexed: 06/30/2023]
41
Tyne RL, Barry PH, Lawson M, Lloyd KG, Giovannelli D, Summers ZM, Ballentine CJ. Identifying and Understanding Microbial Methanogenesis in CO2 Storage. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023. [PMID: 37327355 DOI: 10.1021/acs.est.2c08652] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
42
Nagar S, Bharti M, Negi RK. Genome-resolved metagenomics revealed metal-resistance, geochemical cycles in a Himalayan hot spring. Appl Microbiol Biotechnol 2023;107:3273-3289. [PMID: 37052633 DOI: 10.1007/s00253-023-12503-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 03/18/2023] [Accepted: 03/25/2023] [Indexed: 04/14/2023]
43
García-Maldonado JQ, Latisnere-Barragán H, Escobar-Zepeda A, Cadena S, Ramírez-Arenas PJ, Vázquez-Juárez R, Rojas-Contreras M, López-Cortés A. Revisiting Microbial Diversity in Hypersaline Microbial Mats from Guerrero Negro for a Better Understanding of Methanogenic Archaeal Communities. Microorganisms 2023;11:microorganisms11030812. [PMID: 36985385 PMCID: PMC10059902 DOI: 10.3390/microorganisms11030812] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/21/2023] [Accepted: 02/23/2023] [Indexed: 03/30/2023]  Open
44
Lynes MM, Krukenberg V, Jay ZJ, Kohtz AJ, Gobrogge CA, Spietz RL, Hatzenpichler R. Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments. ISME COMMUNICATIONS 2023;3:22. [PMID: 36949220 PMCID: PMC10033731 DOI: 10.1038/s43705-023-00225-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 02/17/2023] [Accepted: 02/28/2023] [Indexed: 03/24/2023]
45
Zhang C, Fang YX, Yin X, Lai H, Kuang Z, Zhang T, Xu XP, Wegener G, Wang JH, Dong X. The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromolecules. MICROBIOME 2023;11:37. [PMID: 36864529 PMCID: PMC9979476 DOI: 10.1186/s40168-023-01482-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 01/30/2023] [Indexed: 06/01/2023]
46
Qu YN, Rao YZ, Qi YL, Li YX, Li A, Palmer M, Hedlund BP, Shu WS, Evans PN, Nie GX, Hua ZS, Li WJ. Panguiarchaeum symbiosum, a potential hyperthermophilic symbiont in the TACK superphylum. Cell Rep 2023;42:112158. [PMID: 36827180 DOI: 10.1016/j.celrep.2023.112158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 12/27/2022] [Accepted: 02/09/2023] [Indexed: 02/24/2023]  Open
47
Prondzinsky P, Toyoda S, McGlynn SE. The methanogen core and pangenome: conservation and variability across biology's growth temperature extremes. DNA Res 2023;30:dsac048. [PMID: 36454681 PMCID: PMC9886072 DOI: 10.1093/dnares/dsac048] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 11/09/2022] [Accepted: 11/29/2022] [Indexed: 12/05/2022]  Open
48
Mei R, Kaneko M, Imachi H, Nobu MK. The origin and evolution of methanogenesis and Archaea are intertwined. PNAS NEXUS 2023;2:pgad023. [PMID: 36874274 PMCID: PMC9982363 DOI: 10.1093/pnasnexus/pgad023] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 01/20/2023] [Indexed: 02/01/2023]
49
Zhu Y, Chen X, Yang Y, Xie S. Impacts of cyanobacterial biomass and nitrate nitrogen on methanogens in eutrophic lakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;848:157570. [PMID: 35905968 DOI: 10.1016/j.scitotenv.2022.157570] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Revised: 07/13/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
50
Adam PS, Kolyfetis GE, Bornemann TLV, Vorgias CE, Probst AJ. Genomic remnants of ancestral methanogenesis and hydrogenotrophy in Archaea drive anaerobic carbon cycling. SCIENCE ADVANCES 2022;8:eabm9651. [PMID: 36332026 PMCID: PMC9635834 DOI: 10.1126/sciadv.abm9651] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 09/19/2022] [Indexed: 05/19/2023]
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