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Thingujam D, Majeed A, Sivarathri BS, Narayana NK, Bista MK, Cowart KE, Knight AJ, Pajerowska-Mukhtar KM, Bheemanahalli R, Mukhtar MS. The Impact of Soybean Genotypes on Rhizosphere Microbial Dynamics and Nodulation Efficiency. Int J Mol Sci 2025; 26:2878. [PMID: 40243474 PMCID: PMC11988558 DOI: 10.3390/ijms26072878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Revised: 03/11/2025] [Accepted: 03/19/2025] [Indexed: 04/18/2025] Open
Abstract
Rhizosphere microbiome exerts a significant role in plant health, influencing nutrient availability, disease resistance, and overall plant growth. Establishing a robust and efficient nodulation process is essential for optimal nitrogen fixation in legumes like soybeans. Different soybean genotypes exhibit variations in their rhizosphere microbiome, potentially impacting nitrogen fixation through nodulation. However, a detailed understanding of how specific soybean genotypes influence rhizosphere microbial communities and nodulation patterns remains limited. Our study aims to investigate the relationship between rhizosphere microbial abundance and plant growth in four soybean genotypes. We evaluated plant growth parameters, including biomass, leaf area, and stomatal conductance, and identified significant genotypic differences in nodulation. Specifically, genotypes PI 458505 and PI 603490 exhibited high levels of nodulation, while PI 605839A and PI 548400 displayed low nodulation. 16S rRNA gene amplicon sequencing revealed diverse bacterial communities in the rhizosphere, with Proteobacteria as the dominant phylum. High-nodulation genotypes harbored more diverse microbial communities enriched with Actinobacteria and Acidobacteriota, while low-nodulation genotypes showed higher abundances of Firmicutes and Planctomycetota. Alpha and beta diversity analyses confirmed distinct microbial community structures between high- and low-nodulation groups. Our findings suggest that the rhizosphere microbiome significantly influences soybean growth and nodulation, highlighting the potential for genotype-driven strategies to enhance plant-microbe interactions and improve soybean productivity.
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Affiliation(s)
- Doni Thingujam
- Department of Biological Sciences, Clemson University, 132 Long Hall, Clemson, SC 29634, USA; (D.T.); (K.M.P.-M.)
- Department of Biology, University of Alabama at Birmingham, 3100 East Science Hall, 902 14th Street South, Birmingham, AL 35294, USA; (A.M.); (K.E.C.); (A.J.K.)
| | - Aqsa Majeed
- Department of Biology, University of Alabama at Birmingham, 3100 East Science Hall, 902 14th Street South, Birmingham, AL 35294, USA; (A.M.); (K.E.C.); (A.J.K.)
- Department of Genetics & Biochemistry, Biosystems Research Complex, Clemson University, 105 Collings St., Clemson, SC 29634, USA
| | - Bala Subramanyam Sivarathri
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (B.S.S.); (N.K.N.); (M.K.B.)
| | - Nisarga Kodadinne Narayana
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (B.S.S.); (N.K.N.); (M.K.B.)
| | - Mohan K. Bista
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (B.S.S.); (N.K.N.); (M.K.B.)
| | - Katie E. Cowart
- Department of Biology, University of Alabama at Birmingham, 3100 East Science Hall, 902 14th Street South, Birmingham, AL 35294, USA; (A.M.); (K.E.C.); (A.J.K.)
| | - Adelle J. Knight
- Department of Biology, University of Alabama at Birmingham, 3100 East Science Hall, 902 14th Street South, Birmingham, AL 35294, USA; (A.M.); (K.E.C.); (A.J.K.)
| | - Karolina M. Pajerowska-Mukhtar
- Department of Biological Sciences, Clemson University, 132 Long Hall, Clemson, SC 29634, USA; (D.T.); (K.M.P.-M.)
- Department of Biology, University of Alabama at Birmingham, 3100 East Science Hall, 902 14th Street South, Birmingham, AL 35294, USA; (A.M.); (K.E.C.); (A.J.K.)
| | - Raju Bheemanahalli
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (B.S.S.); (N.K.N.); (M.K.B.)
| | - M. Shahid Mukhtar
- Department of Biology, University of Alabama at Birmingham, 3100 East Science Hall, 902 14th Street South, Birmingham, AL 35294, USA; (A.M.); (K.E.C.); (A.J.K.)
- Department of Genetics & Biochemistry, Biosystems Research Complex, Clemson University, 105 Collings St., Clemson, SC 29634, USA
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Gai Y, Liu S, Zhang Z, Wei J, Wang H, Liu L, Bai Q, Qin Q, Zhao C, Zhang S, Xiang N, Zhang X. Integrative Approaches to Soybean Resilience, Productivity, and Utility: A Review of Genomics, Computational Modeling, and Economic Viability. PLANTS (BASEL, SWITZERLAND) 2025; 14:671. [PMID: 40094561 PMCID: PMC11901646 DOI: 10.3390/plants14050671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2024] [Revised: 02/05/2025] [Accepted: 02/07/2025] [Indexed: 03/19/2025]
Abstract
Soybean is a vital crop globally and a key source of food, feed, and biofuel. With advancements in high-throughput technologies, soybeans have become a key target for genetic improvement. This comprehensive review explores advances in multi-omics, artificial intelligence, and economic sustainability to enhance soybean resilience and productivity. Genomics revolution, including marker-assisted selection (MAS), genomic selection (GS), genome-wide association studies (GWAS), QTL mapping, GBS, and CRISPR-Cas9, metagenomics, and metabolomics have boosted the growth and development by creating stress-resilient soybean varieties. The artificial intelligence (AI) and machine learning approaches are improving genetic trait discovery associated with nutritional quality, stresses, and adaptation of soybeans. Additionally, AI-driven technologies like IoT-based disease detection and deep learning are revolutionizing soybean monitoring, early disease identification, yield prediction, disease prevention, and precision farming. Additionally, the economic viability and environmental sustainability of soybean-derived biofuels are critically evaluated, focusing on trade-offs and policy implications. Finally, the potential impact of climate change on soybean growth and productivity is explored through predictive modeling and adaptive strategies. Thus, this study highlights the transformative potential of multidisciplinary approaches in advancing soybean resilience and global utility.
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Affiliation(s)
- Yuhong Gai
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Shuhao Liu
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Zhidan Zhang
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Jian Wei
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Hongtao Wang
- Key Laboratory of Germplasm Resources Evaluation and Application of Changbai Mountain, Tonghua Normal University, Tonghua 134099, China
| | - Lu Liu
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Qianyue Bai
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Qiushi Qin
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
- Jilin Changfa Modern Agricultural Technology Group Co., Ltd., Changchun 130118, China
| | - Chungang Zhao
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Shuheng Zhang
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Nan Xiang
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
| | - Xiao Zhang
- College of Resources and Environment, Key Laboratory of Northern Salt-Alkali Tolerant Soybean Breeding, Ministry of Agriculture and Rural Affairs, Jilin Agricultural University, Changchun 130118, China; (Y.G.); (S.L.); (L.L.); (Q.B.); (Q.Q.); (C.Z.); (S.Z.); (N.X.); (X.Z.)
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Gouli S, Majeed A, Liu J, Moseley D, Mukhtar MS, Ham JH. Microbiome Structures and Beneficial Bacteria in Soybean Roots Under Field Conditions of Prolonged High Temperatures and Drought Stress. Microorganisms 2024; 12:2630. [PMID: 39770832 PMCID: PMC11678281 DOI: 10.3390/microorganisms12122630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Revised: 12/11/2024] [Accepted: 12/13/2024] [Indexed: 01/11/2025] Open
Abstract
Drought stress has a significant impact on agricultural productivity, affecting key crops such as soybeans, the second most widely cultivated crop in the United States. Endophytic and rhizospheric microbial diversity analyses were conducted with soybean plants cultivated during the 2023 growing season amid extreme weather conditions of prolonged high temperatures and drought in Louisiana. Specifically, surviving and non-surviving soybean plants were collected from two plots of a Louisiana soybean field severely damaged by extreme heat and drought conditions in 2023. Although no significant difference was observed between surviving and non-surviving plants in microbial diversity of the rhizosphere, obvious differences were found in the structure of the endophytic microbial community in root tissues between the two plant conditions. In particular, the bacterial genera belonging to Proteobacteria, Pseudomonas and Pantoea, were predominant in the surviving root tissues, while the bacterial genus Streptomyces was conspicuously dominant in the non-surviving (dead) root tissues. Co-occurrence patterns and network centrality analyses enabled us to discern the intricate characteristics of operational taxonomic units (OTUs) within endophytic and rhizospheric networks. Additionally, we isolated and identified bacterial strains that enhanced soybean tolerance to drought stresses, which were sourced from soybean plants under a drought field condition. The 16S rDNA sequence analysis revealed that the beneficial bacterial strains belong to the genera Acinetobacter, Pseudomonas, Enterobacter, and Stenotrophomonas. Specific bacterial strains, particularly those identified as Acinetobacter pittii and Pseudomonas sp., significantly enhanced plant growth metrics and reduced drought stress indices in soybean plants through seed treatment. Overall, this study advances our understanding of the soybean-associated microbiome structure under drought stress, paving the way for future research to develop innovative strategies and biological tools for enhancing soybean resilience to drought.
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Affiliation(s)
- Sandeep Gouli
- Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA;
| | - Aqsa Majeed
- Department of Biology, University of Alabama at Birmingham, 3100 Science & Engineering Complex–East Science Hall, 902 14 Street South, Birmingham, AL 35294, USA; (A.M.); (J.L.)
- Department of Genetics & Biochemistry, Clemson University, 105 Collings St. Biosystems Research Complex, Clemson, SC 29634, USA
| | - Jinbao Liu
- Department of Biology, University of Alabama at Birmingham, 3100 Science & Engineering Complex–East Science Hall, 902 14 Street South, Birmingham, AL 35294, USA; (A.M.); (J.L.)
| | - David Moseley
- Dean Lee Research & Extension Center, Louisiana State University Agricultural Center, Alexandria, LA 71302, USA;
| | - M. Shahid Mukhtar
- Department of Biology, University of Alabama at Birmingham, 3100 Science & Engineering Complex–East Science Hall, 902 14 Street South, Birmingham, AL 35294, USA; (A.M.); (J.L.)
- Department of Genetics & Biochemistry, Clemson University, 105 Collings St. Biosystems Research Complex, Clemson, SC 29634, USA
| | - Jong Hyun Ham
- Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA;
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Liu J, Wang Y, Lin X, Xue Z, Zeng F. Using hyperspectral reflectance to detect changes in photosynthetic activity in Atractylodes chinensis leaves as a function of decreasing soil water content. PHOTOSYNTHETICA 2024; 62:372-380. [PMID: 39811707 PMCID: PMC11726290 DOI: 10.32615/ps.2024.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 11/12/2024] [Indexed: 01/16/2025]
Abstract
Application of hyperspectral reflectance technology to track changes in photosynthetic activity in Atractylodes chinensis (A. chinensis) remains underexplored. This study aimed to investigate the relationship between hyperspectral reflectance and photosynthetic activity in the leaves of A. chinensis in response to a decrease in soil water content. Results demonstrated that the reflectance in both the visible light and near-infrared bands increased in conjunction with reduced soil water content. The derived vegetable indices of photochemical reflection index (PRI) and the pigment-specific simple ratio of chlorophyll b (PSSRb) gradually decreased. In contrast, the normalized difference in water index (NWI) and water index (WI) increased. Moreover, significant correlations were observed between PRI, PSSRb, WI, and NWI and photosynthetic activity indices, namely photosynthetic rate and total performance index. Consequently, hyperspectral reflection represents a productive approach for evaluating the influence of water deficit on photosynthetic activity in A. chinensis leaves.
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Affiliation(s)
- J. Liu
- College of Teacher Education, Hebei Minzu Normal University, 067000 Chengde, Hebei, China
| | - Y. Wang
- School of Resources and Environmental Sciences, Innovative Research Center for Soil and Plant Nutrition in Mountain Areas of Northern Hebei, Hebei Minzu Normal University, 067000 Chengde, Hebei, China
| | - X.M. Lin
- Laboratory Management Center, Hebei Minzu Normal University, 067000 Chengde, Hebei, China
| | - Z.C. Xue
- School of Resources and Environmental Sciences, Innovative Research Center for Soil and Plant Nutrition in Mountain Areas of Northern Hebei, Hebei Minzu Normal University, 067000 Chengde, Hebei, China
| | - F.R. Zeng
- Chengde Bijiashan Ecological Agriculture Technology Development Co., Ltd., 067000 Chengde, Hebei, China
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Chamarthi SK, Purcell LC, Fritschi FB, Ray JD, Smith JR, Kaler AS, King CA, Gillman JD. Association mapping for water use efficiency in soybean identifies previously reported and novel loci and permits genomic prediction. FRONTIERS IN PLANT SCIENCE 2024; 15:1486736. [PMID: 39670270 PMCID: PMC11634610 DOI: 10.3389/fpls.2024.1486736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 11/04/2024] [Indexed: 12/14/2024]
Abstract
Soybean is a major legume crop cultivated globally due to the high quality and quantity of its seed protein and oil. However, drought stress is the most significant factor that decreases soybean yield, and more than 90% of US soybean acreage is dependent on rainfall. Water use efficiency (WUE) is positively correlated with the carbon isotopic ratio 13C/12C (C13 ratio) and selecting soybean varieties for high C13 ratio may enhance WUE and help improve tolerance to drought. Our study objective was to identify genetic loci associated with C13 ratio using a diverse set of 205 soybean maturity group IV accessions, and to examine the genomic prediction accuracy of C13 ratio across a range of environments. An accession panel was grown and assessed across seven distinct combinations of site, year and treatment, with five site-years under irrigation and two site-years under drought stress. Genome-wide association mapping (GWAM) analysis identified 103 significant single nucleotide polymorphisms (SNPs) representing 93 loci associated with alterations to C13 ratio. Out of these 93 loci, 62 loci coincided with previous studies, and 31 were novel. Regions tagged by 96 significant SNPs overlapped with 550 candidate genes involved in plant stress responses. These confirmed genomic loci could serve as a valuable resource for marker-assisted selection to enhance WUE and drought tolerance in soybean. This study also demonstrated that genomic prediction can accurately predict C13 ratio across different genotypes and environments and by examining only significant SNPs identified by GWAM analysis, higher prediction accuracies (P ≤ 0.05; 0.51 ≤ r ≤ 0.65) were observed. We generated genomic estimated breeding values for each genotype in the entire USDA-GRIN germplasm collection for which there was marker data. This information was used to identify the top ten extreme genotypes for each soybean maturity group, which could serve as valuable genetic and physiological resources for future breeding and physiological studies.
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Affiliation(s)
- Siva K. Chamarthi
- Division of Plant Science & Technology, University of Missouri, Columbia, MO, United States
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States
| | - Larry C. Purcell
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States
| | - Felix B. Fritschi
- Division of Plant Science & Technology, University of Missouri, Columbia, MO, United States
| | - Jeffery D. Ray
- Crop Genetics Research Unit, United States Department of Agriculture – Agricultural Research Service (USDA-ARS), Stoneville, MS, United States
| | - James R. Smith
- Crop Genetics Research Unit, United States Department of Agriculture – Agricultural Research Service (USDA-ARS), Stoneville, MS, United States
| | - Avjinder S. Kaler
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States
| | - C. Andy King
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States
| | - Jason D. Gillman
- Plant Genetic Research Unit, United States Department of Agriculture – Agricultural Research Service (USDA-ARS), University of Missouri, Columbia, MO, United States
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Garofalo SP, Modugno AF, De Carolis G, Sanitate N, Negash Tesemma M, Scarascia-Mugnozza G, Tekle Tegegne Y, Campi P. Explainable Artificial Intelligence to Predict the Water Status of Cotton ( Gossypium hirsutum L., 1763) from Sentinel-2 Images in the Mediterranean Area. PLANTS (BASEL, SWITZERLAND) 2024; 13:3325. [PMID: 39683118 DOI: 10.3390/plants13233325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Revised: 11/19/2024] [Accepted: 11/25/2024] [Indexed: 12/18/2024]
Abstract
Climate change and water scarcity bring significant challenges to agricultural systems in the Mediterranean region. Novel methods are required to rapidly monitor the water stress of the crop to avoid qualitative losses of agricultural products. This study aimed to predict the stem water potential of cotton (Gossypium hirsutum L., 1763) using Sentinel-2 satellite imagery and machine learning techniques to enhance monitoring and management of cotton's water status. The research was conducted in Rutigliano, Southern Italy, during the 2023 cotton growing season. Different machine learning algorithms, including random forest, support vector regression, and extreme gradient boosting, were evaluated using Sentinel-2 spectral bands as predictors. The models' performance was assessed using R2 and root mean square error (RMSE). Feature importance was analyzed using permutation importance and SHAP methods. The random forest model using Sentinel-2 bands' reflectance as predictors showed the highest performance, with an R2 of 0.75 (±0.07) and an RMSE of 0.11 (±0.02). XGBoost (R2: 0.73 ± 0.09, RMSE: 0.12 ± 0.02) and AdaBoost (R2: 0.67 ± 0.08, RMSE: 0.13 ± 0.02) followed in performance. Visible (blue and red) and red edge bands were identified as the most influential predictors. The trained RF model was used to model the seasonal trend of cotton's stem water potential, detecting periods of acute and moderate water stress. This approach demonstrates the prospective for high-frequency, non-invasive monitoring of cotton's water status, which could support smart irrigation strategies and improve water use efficiency in Mediterranean cotton production.
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Affiliation(s)
- Simone Pietro Garofalo
- Council for Agricultural Research and Economics, Research Center for Agriculture and Environment, Via Celso Ulpiani, 5, 70125 Bari, Italy
| | - Anna Francesca Modugno
- Council for Agricultural Research and Economics, Research Center for Agriculture and Environment, Via Celso Ulpiani, 5, 70125 Bari, Italy
| | - Gabriele De Carolis
- Council for Agricultural Research and Economics, Research Center for Agriculture and Environment, Via Celso Ulpiani, 5, 70125 Bari, Italy
| | - Nicola Sanitate
- Council for Agricultural Research and Economics, Research Center for Agriculture and Environment, Via Celso Ulpiani, 5, 70125 Bari, Italy
| | | | | | | | - Pasquale Campi
- Council for Agricultural Research and Economics, Research Center for Agriculture and Environment, Via Celso Ulpiani, 5, 70125 Bari, Italy
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Hossain MS, Khan MAR, Mahmud A, Ghosh UK, Anik TR, Mayer D, Das AK, Mostofa MG. Differential Drought Responses of Soybean Genotypes in Relation to Photosynthesis and Growth-Yield Attributes. PLANTS (BASEL, SWITZERLAND) 2024; 13:2765. [PMID: 39409635 PMCID: PMC11478663 DOI: 10.3390/plants13192765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Revised: 09/04/2024] [Accepted: 09/29/2024] [Indexed: 10/20/2024]
Abstract
Water scarcity leads to significant ecological challenges for global farming production. Sustainable agriculture depends on developing strategies to overcome the impacts of drought on important crops, including soybean. In this present study, seven promising soybean genotypes were evaluated for their drought tolerance potential by exposing them to water deficit conditions. The control group was maintained at 100% field capacity (FC), while the drought-treated group was maintained at 50% FC on a volume/weight basis. This treatment was applied at the second trifoliate leaf stage and continued until maturity. Our results demonstrated that water shortage exerted negative impacts on soybean phenotypic traits, physiological and biochemical mechanisms, and yield output in comparison with normal conditions. Our results showed that genotype G00001 exhibited the highest leaf area plant-1 (483.70 cm2), photosynthetic attributes like stomatal conductance (gs) (0.15 mol H2O m-2 s-1) and photosynthetic rate (Pn) (13.73 μmol CO2 m-2 s-1), and xylem exudation rate (0.25 g h-1) under drought conditions. The G00001 genotype showed greater leaf greenness by preserving photosynthetic pigments (total chlorophylls (Chls) and carotenoids; 4.23 and 7.34 mg g-1 FW, respectively) in response to drought conditions. Soybean plants accumulated high levels of stress indicators like proline and malondialdehyde when subjected to drought stress. However, genotype G00001 displayed lower levels of proline (4.49 μg g-1 FW) and malondialdehyde (3.70 μmol g-1 FW), indicating that this genotype suffered from less oxidative stress induced by drought stress compared to the other investigated soybean genotypes. Eventually, the G00001 genotype had a greater yield in terms of seeds pod-1 (SP) (1.90) and 100-seed weight (HSW) (14.60 g) under drought conditions. On the other hand, BD2333 exhibited the largest decrease in plant height (37.10%), pod number plant-1 (85.90%), SP (56.20%), HSW (54.20%), gs (90.50%), Pn (71.00%), transpiration rate (59.40%), relative water content (34.40%), Chl a (79.50%), total Chls (72.70%), and carotenoids (56.70%), along with the maximum increase in water saturation deficit (290.40%) and malondialdehyde content (280.30%) under drought compared to control conditions, indicating its higher sensitivity to drought stress. Our findings suggest that G00001 is a promising candidate to consider for field trials and further evaluation of its molecular signature may help breeding other elite cultivars to develop drought-tolerant, high-yielding soybean varieties.
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Affiliation(s)
- Md. Saddam Hossain
- Department of Agronomy, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh; (M.S.H.); (A.M.); (U.K.G.)
| | - Md. Arifur Rahman Khan
- Department of Agronomy, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh; (M.S.H.); (A.M.); (U.K.G.)
- Department of Plant and Soil Science, Texas Tech University, Lubbock, TX 79409, USA; (T.R.A.); (D.M.)
| | - Apple Mahmud
- Department of Agronomy, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh; (M.S.H.); (A.M.); (U.K.G.)
| | - Uttam Kumar Ghosh
- Department of Agronomy, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh; (M.S.H.); (A.M.); (U.K.G.)
| | - Touhidur Rahman Anik
- Department of Plant and Soil Science, Texas Tech University, Lubbock, TX 79409, USA; (T.R.A.); (D.M.)
| | - Daniel Mayer
- Department of Plant and Soil Science, Texas Tech University, Lubbock, TX 79409, USA; (T.R.A.); (D.M.)
| | - Ashim Kumar Das
- Department of Applied Biosciences, College of Agriculture and Life Science, Kyungpook National University, Daegu 41566, Republic of Korea;
| | - Mohammad Golam Mostofa
- Department of Chemistry, State University of New York College of Environmental Science and Forestry, Syracuse, NY 13210, USA
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Kodadinne Narayana N, Wijewardana C, Alsajri FA, Reddy KR, Stetina SR, Bheemanahalli R. Resilience of soybean genotypes to drought stress during the early vegetative stage. Sci Rep 2024; 14:17365. [PMID: 39075221 PMCID: PMC11286970 DOI: 10.1038/s41598-024-67930-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Accepted: 07/17/2024] [Indexed: 07/31/2024] Open
Abstract
Drought stress poses a significant risk to soybean production, as it relies on optimum rainfall under rainfed conditions. Exposure to brief dry periods during early vegetative growth impacts soybean growth and development. Choosing a genotype that can withstand stress with minimal impact on physiology and growth might help sustain biomass or yields under low rainfall conditions. Therefore, this study characterized 64 soybean genotypes for traits associated with drought tolerance during the early vegetative stage under two soil moisture treatments, 100% evapotranspiration (well-watered) and 50% evapotranspiration (drought), using the Soil-Plant-Atmosphere Research (SPAR) units. Eighteen morpho-physiological traits responses were assessed, and their relationship with the early vegetative drought tolerance was investigated. Drought stress significantly increased root weight, root volume, and root-to-shoot ratio but reduced shoot weight. Drought-stressed plants increased the canopy temperature by 3.1 °C. Shoot weight positively correlated with root surface area (r = 0.52, P < 0.001) and root weight (r = 0.65, P < 0.001). There was a strong negative correlation between shoot weight and root-to-shoot ratio (P < 0.01). Further, the combined drought response index was strongly associated with the root response index and weakly with the physiological response index. These findings suggest that genotypes (S55-Q3 and R2C4775) with high above-ground biomass with a balanced root-to-shoot ratio improves drought tolerance during the early vegetative. These genotypes could serve as valuable genetic resources to dissect the molecular networks underlying drought tolerance and ultimately be used in breeding programs to improve root ability at the early vegetative stage.
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Affiliation(s)
| | - Chathurika Wijewardana
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA
| | - Firas A Alsajri
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA
- Field Crops Department, Tikrit University, Tikrit, 009642, Iraq
| | - K Raja Reddy
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA.
| | - Salliana R Stetina
- USDA Agricultural Research Service, Crop Genetics Research Unit, Stoneville, MS, USA
| | - Raju Bheemanahalli
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA.
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9
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Jackwerth K, Biella P, Klečka J. Pollen thermotolerance of a widespread plant, Lotus corniculatus, in response to climate warming: possible local adaptation of populations from different elevations. PeerJ 2024; 12:e17148. [PMID: 38708360 PMCID: PMC11067902 DOI: 10.7717/peerj.17148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 03/01/2024] [Indexed: 05/07/2024] Open
Abstract
One of the most vulnerable phases in the plant life cycle is sexual reproduction, which depends on effective pollen transfer, but also on the thermotolerance of pollen grains. Pollen thermotolerance is temperature-dependent and may be reduced by increasing temperature associated with global warming. A growing body of research has focused on the effect of increased temperature on pollen thermotolerance in crops to understand the possible impact of temperature extremes on yield. Yet, little is known about the effects of temperature on pollen thermotolerance of wild plant species. To fill this gap, we selected Lotus corniculatus s.l. (Fabaceae), a species common to many European habitats and conducted laboratory experiments to test its pollen thermotolerance in response to artificial increase in temperature. To test for possible local adaptation of pollen thermal tolerance, we compared data from six lowland (389-451 m a.s.l.) and six highland (841-1,030 m a.s.l.) populations. We observed pollen germination in vitro at 15 °C, 25 °C, 30 °C, and 40 °C. While lowland plants maintained a stable germination percentage across a broad temperature range (15-30 °C) and exhibited reduced germination only at extremely high temperatures (40 °C), highland plants experienced reduced germination even at 30 °C-temperatures commonly exceeded in lowlands during warm summers. This suggests that lowland populations of L. corniculatus may be locally adapted to higher temperature for pollen germination. On the other hand, pollen tube length decreased with increasing temperature in a similar way in lowland and highland plants. The overall average pollen germination percentage significantly differed between lowland and highland populations, with highland populations displaying higher germination percentage. On the other hand, the average pollen tube length was slightly smaller in highland populations. In conclusion, we found that pollen thermotolerance of L. corniculatus is reduced at high temperature and that the germination of pollen from plant populations growing at higher elevations is more sensitive to increased temperature, which suggests possible local adaptation of pollen thermotolerance.
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Affiliation(s)
- Karolína Jackwerth
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - Paolo Biella
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
| | - Jan Klečka
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
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10
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Lin S, Zhang W, Wang G, Hu Y, Zhong X, Tang G. Physiological Regulation of Photosynthetic-Related Indices, Antioxidant Defense, and Proline Anabolism on Drought Tolerance of Wild Soybean ( Glycine soja L.). PLANTS (BASEL, SWITZERLAND) 2024; 13:880. [PMID: 38592877 PMCID: PMC10975085 DOI: 10.3390/plants13060880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 03/13/2024] [Accepted: 03/13/2024] [Indexed: 04/11/2024]
Abstract
Wild soybean (Glycine soja L.), drought-tolerant cultivar Tiefeng 31 (Glycine max L.), and drought-sensitive cultivar Fendou 93 (Glycine max L.) were used as materials to investigate the drought tolerance mechanism after 72 h 2.5 M PEG 8000 (osmotic potential -0.54 MPa)-simulated drought stress at the seedling stage. The results indicated that the leaves of the G. soja did not wilt under drought stress. However, both the drought-tolerant and drought-sensitive cultivated soybean cultivars experienced varying degrees of leaf wilt. Notably, the drought-sensitive cultivated soybean cultivars exhibited severe leaf wilt after the drought stress. Drought stress was determined to have a significant impact on the dry matter of the above-ground part of the drought-sensitive cultivar Fendou 93, followed by the drought-tolerant cultivar Tiefeng 31, with the lowest reduction observed in G. soja. Furthermore, the presence of drought stress resulted in the closure of leaf stomata. G. soja exhibited the highest proportion of stomatal opening per unit area, followed by the drought-tolerant cultivar Tiefeng 31, while the drought-sensitive cultivar Fendou 93 displayed the lowest percentage. Photosynthesis-related indexes, including photosynthetic rate, intercellular CO2, transpiration rate, and stomatal conductance, decreased in Fendou 93 and Tiefeng 31 after drought stress, but increased in G. soja. In terms of the antioxidant scavenging system, lower accumulation of malondialdehyde (MDA) was observed in G. soja and Tiefeng 31, along with higher activities of superoxide dismutase (SOD, EC 1.15.1.1) and catalase (CAT, EC 1.11.1.6) to counteract excess reactive oxygen species and maintain cell membrane integrity. In contrast, the drought-sensitive cultivar Fendou 93 had higher MDA content and higher activities of ascorbate peroxidase (APX, EC 1.11.1.11) and peroxidase (POD, 1.11.1.7). G. soja and Tiefeng 31 also exhibited less accumulation of osmolytes, including soluble sugar, soluble protein, and free proline content. The activities of δ-OAT, ProDH, and P5CS, key enzymes in proline anabolism, showed an initial increase under drought stress, followed by a decrease, and then an increase again at the end of drought stress in G. soja. Before drought stress, Tiefeng 31 had higher activities of ProDH and P5CS, which decreased with prolonged drought stress. Fendou 93 experienced an increase in the activities of δ-OAT, ProDH, and P5CS under drought stress. The δ-OAT gene expression levels were up-regulated in all three germplasms. The expression levels of the P5CS gene in Fendou 93 and Tiefeng 31 were down-regulated, while G. soja showed no significant change. The expression of the P5CR gene and ProDH gene was down-regulated in Fendou 93 and Tiefeng 31, but up-regulated in G. soja. This indicates that proline content is regulated at both the transcription and translation levels.
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Affiliation(s)
- Song Lin
- Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China; (S.L.); (Y.H.); (X.Z.)
| | - Weimei Zhang
- Lishui Institute of Agriculture and Forest Science, Lishui 323000, China;
| | - Guifeng Wang
- Bureau of Agriculture and Rural Affairs of Lianyungang City, Lianyungang 222001, China;
| | - Yunxiang Hu
- Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China; (S.L.); (Y.H.); (X.Z.)
| | - Xuanbo Zhong
- Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China; (S.L.); (Y.H.); (X.Z.)
| | - Guixiang Tang
- Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China; (S.L.); (Y.H.); (X.Z.)
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11
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Delandmeter M, de Faccio Carvalho PC, Bremm C, Dos Santos Cargnelutti C, Bindelle J, Dumont B. Integrated crop and livestock systems increase both climate change adaptation and mitigation capacities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169061. [PMID: 38061655 DOI: 10.1016/j.scitotenv.2023.169061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/28/2023] [Accepted: 11/30/2023] [Indexed: 01/18/2024]
Abstract
Integrated crop-livestock systems (ICLS) are proposed as key solutions to the various challenges posed to present-day agriculture which must guarantee high and stable yields while minimizing its impacts on the environment. Yet the complex relationships between crops, grasslands and animals on which they rely demand careful and precise management. In this study, from a 18-year ICLS field experiment in Brazil, that consists in annual no-till soybean-pastures grazed by beef cattle, we investigated the impacts of contrasted pastures grazing intensities (defined by sward heights of 10, 20, 30 and 40 cm, plus an ungrazed treatment) on the agroecosystem productivity and soil organic carbon (SOC) under both historical and future (2040-2070, RCP8.5) climatic conditions. We used an innovative methodology to model the ICLS with the STICS soil-crop model, which was validated with field observations. Results showed that the total system production increased along with grazing intensity because of higher stocking rates and subsequent live weight gains. Moderate and light grazing intensities (30 and 40 cm sward heights) resulted in the largest increase in SOC over the 18-year period, with all ICLS treatments leading to greater SOC contents than the ungrazed treatment. When facing climate change under future conditions, all treatments increased in productivity due to the CO2 fertilization effect and the increases in organic amendments that result from the larger stocking rate allowed by the increased pasture carrying capacity. Moderate grazing resulted in the most significant enhancements in productivity and SOC levels. These improvements were accompanied by increased resistance to both moderate and extreme climatic events, benefiting herbage production and live weight gain. Globally, our results show that adding a trophic level (i.e. herbivores) into cropping systems, provided that their carrying capacities are respected, proved to increase their ability to withstand climate change and to contribute to its mitigation.
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Affiliation(s)
- Mathieu Delandmeter
- Liege University, Gembloux Agro-Bio Tech, TERRA Teaching and Research Centre, Plant Sciences/Crop Science, Passage des Déportés 2, 5030 Gembloux, Belgium.
| | - Paulo César de Faccio Carvalho
- Federal University of Rio Grande do Sul, Animal Science Research Program, Bento Gonçalves Avenue 7712, 91540-00 Porto Alegre, RS, Brazil
| | - Carolina Bremm
- Federal University of Rio Grande do Sul, Animal Science Research Program, Bento Gonçalves Avenue 7712, 91540-00 Porto Alegre, RS, Brazil
| | - Carolina Dos Santos Cargnelutti
- Federal University of Rio Grande do Sul, Animal Science Research Program, Bento Gonçalves Avenue 7712, 91540-00 Porto Alegre, RS, Brazil
| | - Jérôme Bindelle
- Liege University, Gembloux Agro-Bio Tech, TERRA Teaching and Research Centre, Animal Sciences, Passage des Déportés 2, 5030 Gembloux, Belgium
| | - Benjamin Dumont
- Liege University, Gembloux Agro-Bio Tech, TERRA Teaching and Research Centre, Plant Sciences/Crop Science, Passage des Déportés 2, 5030 Gembloux, Belgium
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12
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Jia Q, Zhou M, Xiong Y, Wang J, Xu D, Zhang H, Liu X, Zhang W, Wang Q, Sun X, Chen H. Development of KASP markers assisted with soybean drought tolerance in the germination stage based on GWAS. FRONTIERS IN PLANT SCIENCE 2024; 15:1352379. [PMID: 38425800 PMCID: PMC10902137 DOI: 10.3389/fpls.2024.1352379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 01/30/2024] [Indexed: 03/02/2024]
Abstract
Soybean [Glycine max(L.)Merr.] is a leading oil-bearing crop and cultivated globally over a vast scale. The agricultural landscape in China faces a formidable challenge with drought significantly impacting soybean production. In this study, we treated a natural population of 264 Chinese soybean accessions using 15% PEG-6000 and used GR, GE, GI, RGR, RGE, RGI and ASFV as evaluation index. Using the ASFV, we screened 17 strong drought-tolerant soybean germplasm in the germination stage. Leveraging 2,597,425 high-density SNP markers, we conducted Genome-Wide Association Studies (GWAS) and identified 92 SNPs and 9 candidate genes significantly associated with drought tolerance. Furthermore, we developed two KASP markers for S14_5147797 and S18_53902767, which closely linked to drought tolerance. This research not only enriches the pool of soybean germplasm resources but also establishes a robust foundation for the molecular breeding of drought tolerance soybean varieties.
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Affiliation(s)
- Qianru Jia
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Miaomiao Zhou
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Yawen Xiong
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- College of Life Science, Nanjing Agricultural University, Nanjing, China
| | - Junyan Wang
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Donghe Xu
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Japan
| | - Hongmei Zhang
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Xiaoqing Liu
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Wei Zhang
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Qiong Wang
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Xin Sun
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Huatao Chen
- Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- Zhongshan Biological Breeding Laboratory (ZSBBL), Nanjing, China
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13
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Sharma RK, Dhillon J, Kumar P, Mulvaney MJ, Reed V, Bheemanahalli R, Cox MS, Kukal MS, Reddy KN. Climate trends and soybean production since 1970 in Mississippi: Empirical evidence from ARDL model. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167046. [PMID: 37714355 DOI: 10.1016/j.scitotenv.2023.167046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/07/2023] [Accepted: 09/11/2023] [Indexed: 09/17/2023]
Abstract
Studying historical response of crops to weather conditions at a finer scale is essential for devising agricultural strategies tailored to expected climate changes. However, determining the relationship between crop and climate in Mississippi (MS) remains elusive. Therefore, this research attempted to i) estimate climate trends between 1970 and 2020 in MS during the soybean growing season (SGS) using the Mann-Kendall and Sen slope method, ii) calculate the impact of climate change on soybean yield using an auto-regressive distributive lag (ARDL) econometric model, and iii) identify the most critical months from a crop-climate perspective by generating a correlation between the detrended yield and the monthly average for each climatic variable. Specific variables considered were maximum temperature (Tmax), minimum temperature (Tmin), diurnal temperature range (DTR), precipitation (PT), carbon dioxide emissions (CO2), and relative humidity (RH). All required diagnostic-tests i.e., pre-analysis, post-analysis, model-sensitivity, and assessing the models' goodness-of-fit were performed and statistical standards were met. A positive trend in Tmin (+0.25 °C/decade), and a negative trend in DTR (-0.18 °C/decade) was found. Although Tmax, PT, and RH showed non-significant trends, numerical changes were noted as +0.11 °C/decade, +3.03 mm/decade, and -0.06 %/decade, respectively. Furthermore, soybean yield was positively correlated with Tmin (in June and September), PT (in July and August), and RH (in July), but negatively correlated with Tmax (in July and August) and DTR (in June, July, and August). Soybean yield was observed to be significantly reduced by 18.11 % over the long-term and by 5.51 % over the short-term for every 1 °C increase in Tmax. With every unit increase in Tmin and CO2 emissions, the yield of soybeans increased significantly by 7.76 % and 3.04 %, respectively. Altogether, soybeans in MS exhibited variable sensitivity to short- and long-terms climatic changes. The results highlight the importance of testing climate-resilient agronomic practices and cultivars that encompass asymmetric sensitivities in response to climatic conditions of MS.
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Affiliation(s)
| | - Jagmandeep Dhillon
- Department of Plant and Soil Sciences, Mississippi State University, MS, USA.
| | - Pushp Kumar
- School of Humanities, Social Sciences, and Management, Indian Institute of Technology, Odisha, India
| | - Michael J Mulvaney
- Department of Plant and Soil Sciences, Mississippi State University, MS, USA
| | - Vaughn Reed
- Department of Plant and Soil Sciences, Mississippi State University, MS, USA
| | - Raju Bheemanahalli
- Department of Plant and Soil Sciences, Mississippi State University, MS, USA
| | - Michael S Cox
- Department of Plant and Soil Sciences, Mississippi State University, MS, USA
| | - Meetpal S Kukal
- Department of Agricultural and Biological Engineering, The Pennsylvania State University, State College, PA, USA
| | - Krishna N Reddy
- Crop Production Systems Research Unit, USDA-ARS, Stoneville, MS, USA
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14
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Methela NJ, Pande A, Islam MS, Rahim W, Hussain A, Lee DS, Mun BG, Maria Joseph Raj NP, Kim SJ, Kim Y, Yun BW. Chitosan-GSNO nanoparticles: a positive modulator of drought stress tolerance in soybean. BMC PLANT BIOLOGY 2023; 23:639. [PMID: 38082263 PMCID: PMC10712192 DOI: 10.1186/s12870-023-04640-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 11/29/2023] [Indexed: 12/18/2023]
Abstract
BACKGROUND Chitosan biopolymer is an emerging non-toxic and biodegradable plant elicitor or bio-stimulant. Chitosan nanoparticles (CSNPs) have been used for the enhancement of plant growth and development. On the other hand, NO is an important signaling molecule that regulates several aspects of plant physiology under normal and stress conditions. Here we report the synthesis, characterization, and use of chitosan-GSNO nanoparticles for improving drought stress tolerance in soybean. RESULTS The CSGSNONPs released NO gas for a significantly longer period and at a much lower rate as compared to free GSNO indicating that incorporation of GSNO in CSNPs can protect the NO-donor from rapid decomposition and ensure optimal NO release. CS-GSNONPs improved drought tolerance in soybean plants reflected by a significant increase in plant height, biomass, root length, root volume, root surface area, number of root tips, forks, and nodules. Further analyses indicated significantly lower electrolyte leakage, higher proline content, higher catalase, and ascorbate peroxidase activity, and reduction in MDA and H2O2 contents after treatment with 50 μM CS-GSNONPs under drought stress conditions. Quantitative real-time PCR analysis indicated that CS-GSNONPs protected against drought-induced stress by regulating the expression of drought stress-related marker genes such as GmDREB1a, GmP5CS, GmDEFENSIN, and NO-related genes GmGSNOR1 and GmNOX1. CONCLUSIONS This study highlights the potential of nano-technology-based delivery systems for nitric oxide donors to improve plant growth, and development and protect against stresses.
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Affiliation(s)
- Nusrat Jahan Methela
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
- Department of Agriculture, Noakhali Science and Technology University, Noakhali, 3814, Bangladesh
| | - Anjali Pande
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
| | - Mohammad Shafiqul Islam
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
- Department of Agriculture, Noakhali Science and Technology University, Noakhali, 3814, Bangladesh
| | - Waqas Rahim
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
| | - Adil Hussain
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea.
- Department of Agriculture, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa, Mardan, 23200, Pakistan.
| | - Da-Sol Lee
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
| | - Bong-Gyu Mun
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
| | - Nirmal Prashanth Maria Joseph Raj
- Nanomaterials and Systems Lab, Mechatronics Engineering, Faculty of Applied Energy System, Jeju National University, Jeju, 63243, South Korea
- Energy Harvesting Research Group, School of Physics & Astronomy, SUPA, University of St Andrews, St. Andrews, Fife, KY16 9SS, UK
| | - Sang-Jae Kim
- Nanomaterials and Systems Lab, Mechatronics Engineering, Faculty of Applied Energy System, Jeju National University, Jeju, 63243, South Korea
| | - Yoonha Kim
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea
| | - Byung-Wook Yun
- Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, South Korea.
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15
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Derevyanchuk M, Kretynin S, Bukhonska Y, Pokotylo I, Khripach V, Ruelland E, Filepova R, Dobrev PI, Martinec J, Kravets V. Influence of Exogenous 24-Epicasterone on the Hormonal Status of Soybean Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:3586. [PMID: 37896049 PMCID: PMC10609748 DOI: 10.3390/plants12203586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/21/2023] [Accepted: 10/02/2023] [Indexed: 10/29/2023]
Abstract
Brassinosteroids (BRs) are key phytohormones involved in the regulation of major processes of cell metabolism that guide plant growth. In the past decades, new evidence has made it clear that BRs also play a key role in the orchestration of plant responses to many abiotic and biotic stresses. In the present work, we analyzed the impact of foliar treatment with 24-epicastasterone (ECS) on the endogenous content of major phytohormones (auxins, salicylic acid, jasmonic acid, and abscisic acid) and their intermediates in soybean leaves 7 days following the treatment. Changes in the endogenous content of phytohormones have been identified and quantified by LC/MS. The obtained results point to a clear role of ECS in the upregulation of auxin content (indole-3-acetic acid, IAA) and downregulation of salicylic, jasmonic, and abscisic acid levels. These data confirm that under optimal conditions, ECS in tested concentrations of 0.25 µM and 1 µM might promote growth in soybeans by inducing auxin contents. Benzoic acid (a precursor of salicylic acid (SA)), but not SA itself, has also been highly accumulated under ECS treatment, which indicates an activation of the adaptation strategies of cell metabolism to possible environmental challenges.
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Affiliation(s)
- Michael Derevyanchuk
- VP Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences of Ukraine, 02094 Kyiv, Ukraine
| | - Serhii Kretynin
- VP Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences of Ukraine, 02094 Kyiv, Ukraine
| | - Yaroslava Bukhonska
- VP Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences of Ukraine, 02094 Kyiv, Ukraine
| | - Igor Pokotylo
- VP Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences of Ukraine, 02094 Kyiv, Ukraine
- Génie Enzymatique et Cellulaire, UMR CNRS 7025, Université de Technologie de Compiègne, 60203 Compiègne, France;
| | - Vladimir Khripach
- Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Kuprevich Str., 5/2, 220141 Minsk, Belarus
| | - Eric Ruelland
- Génie Enzymatique et Cellulaire, UMR CNRS 7025, Université de Technologie de Compiègne, 60203 Compiègne, France;
| | - Roberta Filepova
- Institute of Experimental Botany, The Czech Academy of Sciences, 16502 Prague, Czech Republic
| | - Petre I. Dobrev
- Institute of Experimental Botany, The Czech Academy of Sciences, 16502 Prague, Czech Republic
| | - Jan Martinec
- Institute of Experimental Botany, The Czech Academy of Sciences, 16502 Prague, Czech Republic
| | - Volodymyr Kravets
- VP Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences of Ukraine, 02094 Kyiv, Ukraine
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Kim ST, Sang MK. Enhancement of osmotic stress tolerance in soybean seed germination by bacterial bioactive extracts. PLoS One 2023; 18:e0292855. [PMID: 37824539 PMCID: PMC10569584 DOI: 10.1371/journal.pone.0292855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Accepted: 10/01/2023] [Indexed: 10/14/2023] Open
Abstract
Soybean (Glycine max (L.) Merr.) is important to the global food industry; however, its productivity is affected by abiotic stresses such as osmosis, flooding, heat, and cold. Here, we evaluated the bioactive extracts of two biostimulant bacterial strains, Bacillus butanolivorans KJ40 and B. siamensis H30-3, for their ability to convey tolerance to osmotic stress in soybean seeds during germination. Soybean seeds were dip-treated in extracts of KJ40 (KJ40E) or H30-3 (H30-3E) and incubated with either 0% or 20% polyethylene glycol 6000 (PEG), simulating drought-induced osmotic stress. We measured malondialdehyde content as a marker for lipid peroxidation, as well as the activity of antioxidant enzymes, including catalase, glutathione peroxidase, and glutathione reductase, together with changes in sugars content. We also monitored the expression of genes involved in the gibberellic acid (GA)-biosynthesis pathway, and abscisic acid (ABA) signaling. Following osmotic stress in the extract-treated seeds, malondialdehyde content decreased, while antioxidant enzyme activity increased. Similarly, the expression of GA-synthesis genes, including GmGA2ox1 and GmGA3 were upregulated in KJ40E-dipped seeds at 12 or 6 h after treatment, respectively. The ABA signaling genes GmABI4 and GmDREB1 were upregulated in H30-3E- and KJ40E-treated seeds at 0 and 12 h after treatment under osmotic stress; however, GmABI5, GmABI4, and GmDREB1 levels were also elevated in the dip-treated seeds in baseline conditions. The GA/ABA ratio increased only in KJ40E-treated seeds undergoing osmotic stress, while glucose content significantly decreased in H30-3E-treated seeds at 24 h after treatment. Collectively, our findings indicated that dip-treatment of soybean seeds in KJ40E and H30-3E can enhance the seeds' resistance to osmotic stress during germination, and ameliorate cellular damage caused by secondary oxidative stress. This seed treatment can be used agriculturally to promote germination under drought stress and lead to increase crop yield and quality.
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Affiliation(s)
- Sang Tae Kim
- Division of Agricultural Microbiology, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, Republic of Korea
- Department of Applied Bioscience, Dong-A University, Busan, Republic of Korea
| | - Mee Kyung Sang
- Division of Agricultural Microbiology, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, Republic of Korea
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Mangena P, Mushadu PN. Colchicine-Induced Polyploidy in Leguminous Crops Enhances Morpho-Physiological Characteristics for Drought Stress Tolerance. Life (Basel) 2023; 13:1966. [PMID: 37895348 PMCID: PMC10607973 DOI: 10.3390/life13101966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 09/20/2023] [Accepted: 09/23/2023] [Indexed: 10/29/2023] Open
Abstract
Legumes play a significant role in the alleviation of food insecurity, maintaining soil fertility, and achieving sustainable crop production under adverse environmental conditions. The increased demand in legume production contemplates that attention on the genetic improvement of these crops through various means such as genetic engineering and mutation breeding should take a centre stage in global agriculture. Therefore, this paper provides a succinct analysis of the currently available literature on morphological and physiological traits in polyploidised leguminous plants to counter the adverse effects of drought stress. The effects of colchicine on various morphological and physiological traits of polyploidised legumes compared to their diploid counterparts were examined. Numerous reports revealed variations in these traits, such as improved root and shoot growth, plant biomass, chloroplastidic content, protein, RNA, and DNA. The differences observed were also associated with the strong relationship between plant ploidy induction and colchicine application. Furthermore, the analysis indicated that polyploidisation remains dose-dependent and may be achievable within a shorter space of time as this antimitotic chemical interferes with chromosome separations in somatic plant cells. The efficiency of this process also depends on the advancement of treatment conditions (in vitro, in vivo, or ex vitro) and the successful regeneration of polyploidised plants for adaptation under drought stress conditions. As such, the improvement in metabolite profile and other essential growth characteristics serves as a clear indication that induced polyploidy needs to be further explored to confer resilience to environmental stress and improve crop yield under drought stress conditions in leguminous plants.
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Affiliation(s)
- Phetole Mangena
- Department of Biodiversity, Faculty of Science and Agriculture, School of Molecular and Life Sciences, University of Limpopo, Private Bag X1106, Sovenga 0727, South Africa;
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Adhikari B, Olorunwa O, Brazel S, Barickman T, Bheemanahalli R. Impact of salt stress on physiology, leaf mass, and nutrient accumulation in romaine lettuce. PHOTOSYNTHETICA 2023; 61:342-353. [PMID: 39651368 PMCID: PMC11558591 DOI: 10.32615/ps.2023.027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 06/26/2023] [Indexed: 12/11/2024]
Abstract
The impact of salt stress is becoming more prevalent each year, largely due to the effects of climate change. Limited availability of salt-free water is rising concern for hydroponics lettuce production. Despite evidence supporting salt stress-induced quality losses and physiological changes, studies on romaine lettuce salt-stress tolerance are limited. This study examined the mechanism underlying the sodium chloride (NaCl) tolerance (0, 50, 100, and 150 mM) of lettuce on its growth and nutrition at late-rosette and early head-formation stages. Results revealed 76% fresh mass reduction under increased NaCl at both stages. The study also found unchanged carbon assimilation with reduced stomatal conductance under increased NaCl. Salt-stressed lettuce accumulated more boron and iron but had reduced phosphorus and calcium. Phenolics and sugars increased linearly under salt stress, suggesting that lettuce responds to increased oxidative stress at both stages. A positive association between salt treatment and sodium to potassium ion ratio indicated lettuce sensitivity to salt stress at both stages.
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Affiliation(s)
- B. Adhikari
- Department of Plant and Soil Sciences, North Mississippi Research and Extension Center, Mississippi State University, Verona, MS, USA
| | - O.J. Olorunwa
- Department of Plant and Soil Sciences, North Mississippi Research and Extension Center, Mississippi State University, Verona, MS, USA
| | - S. Brazel
- Department of Plant and Soil Sciences, North Mississippi Research and Extension Center, Mississippi State University, Verona, MS, USA
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA
| | - T.C. Barickman
- Department of Plant and Soil Sciences, North Mississippi Research and Extension Center, Mississippi State University, Verona, MS, USA
- Fluence Bioengineering, Austin, TX, USA
| | - R. Bheemanahalli
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA
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