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For: Nizam S, Verma S, Borah NN, Gazara RK, Verma PK. Comprehensive genome-wide analysis reveals different classes of enigmatic old yellow enzyme in fungi. Sci Rep 2014;4:4013. [PMID: 24500274 PMCID: PMC3915301 DOI: 10.1038/srep04013] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Accepted: 01/17/2014] [Indexed: 11/09/2022]  Open
Number Cited by Other Article(s)
1
Feng J, Ye H, Lu C, Pan L, Chen H, Zhu L, Chen X. Application of protein engineering to ene-reductase for the synthesis of chiral compounds through asymmetric reaction. Crit Rev Biotechnol 2025;45:665-682. [PMID: 39134447 DOI: 10.1080/07388551.2024.2382957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 07/01/2024] [Accepted: 07/09/2024] [Indexed: 04/17/2025]
2
Damada PH, Rozeboom HJ, Fraaije MW. Recombinant Production and Characterization of Six Ene-reductases from Penicillium steckii. Chembiochem 2025;26:e202401007. [PMID: 40072226 PMCID: PMC12002099 DOI: 10.1002/cbic.202401007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 03/08/2025] [Accepted: 03/10/2025] [Indexed: 03/26/2025]
3
Smith CO, Moran GR. Elucidation of the Catalytic Sequence of Dihydroorotate Dehydrogenase B from Lactoccocus lactis: Evidence for Accumulation of a Flavin Bisemiquinone State in Catalysis. Biochemistry 2024;63:1347-1358. [PMID: 38691339 DOI: 10.1021/acs.biochem.4c00025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2024]
4
Emmanuel MA, Bender SG, Bilodeau C, Carceller JM, DeHovitz JS, Fu H, Liu Y, Nicholls BT, Ouyang Y, Page CG, Qiao T, Raps FC, Sorigué DR, Sun SZ, Turek-Herman J, Ye Y, Rivas-Souchet A, Cao J, Hyster TK. Photobiocatalytic Strategies for Organic Synthesis. Chem Rev 2023;123:5459-5520. [PMID: 37115521 PMCID: PMC10905417 DOI: 10.1021/acs.chemrev.2c00767] [Citation(s) in RCA: 82] [Impact Index Per Article: 41.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023]
5
Yamasaki K. Old yellow enzyme of a novel fungi‐specific class. FEBS J 2022;289:5527-5530. [DOI: 10.1111/febs.16526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 05/09/2022] [Indexed: 11/28/2022]
6
Singh Y, Sharma R, Mishra M, Verma PK, Saxena AK. Crystal structure of ArOYE6 reveals a novel C‐terminal helical extension and mechanistic insights into the distinct class III OYEs from pathogenic fungi. FEBS J 2022;289:5531-5550. [DOI: 10.1111/febs.16445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 03/02/2022] [Accepted: 03/18/2022] [Indexed: 11/28/2022]
7
Robescu MS, Cendron L, Bacchin A, Wagner K, Reiter T, Janicki I, Merusic K, Illek M, Aleotti M, Bergantino E, Hall M. Asymmetric Proton Transfer Catalysis by Stereocomplementary Old Yellow Enzymes for C═C Bond Isomerization Reaction. ACS Catal 2022. [DOI: 10.1021/acscatal.2c01110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
8
Robescu MS, Loprete G, Gasparotto M, Vascon F, Filippini F, Cendron L, Bergantino E. The Family Keeps on Growing: Four Novel Fungal OYEs Characterized. Int J Mol Sci 2022;23:3050. [PMID: 35328465 PMCID: PMC8954901 DOI: 10.3390/ijms23063050] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 03/07/2022] [Accepted: 03/09/2022] [Indexed: 11/16/2022]  Open
9
Shift from morphological to recent advanced molecular approaches for the identification of nematodes. Genomics 2022;114:110295. [DOI: 10.1016/j.ygeno.2022.110295] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 01/08/2022] [Accepted: 02/01/2022] [Indexed: 11/17/2022]
10
Forouzesh DC, Beaupre BA, Butrin A, Wawrzak Z, Liu D, Moran GR. The Interaction of Porcine Dihydropyrimidine Dehydrogenase with the Chemotherapy Sensitizer: 5-Ethynyluracil. Biochemistry 2021;60:1120-1132. [PMID: 33755421 DOI: 10.1021/acs.biochem.1c00096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
11
Böhmer S, Marx C, Gómez-Baraibar Á, Nowaczyk MM, Tischler D, Hemschemeier A, Happe T. Evolutionary diverse Chlamydomonas reinhardtii Old Yellow Enzymes reveal distinctive catalytic properties and potential for whole-cell biotransformations. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101970] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
12
Characterization of the Novel Ene Reductase Ppo-Er1 from Paenibacillus Polymyxa. Catalysts 2020. [DOI: 10.3390/catal10020254] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
13
Roman JV, Melkonian TR, Silvaggi NR, Moran GR. Transient-State Analysis of Human Isocitrate Dehydrogenase I: Accounting for the Interconversion of Active and Non-Active Conformational States. Biochemistry 2019;58:5366-5380. [PMID: 31478653 DOI: 10.1021/acs.biochem.9b00518] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
14
Peters C, Frasson D, Sievers M, Buller R. Novel Old Yellow Enzyme Subclasses. Chembiochem 2019;20:1569-1577. [DOI: 10.1002/cbic.201800770] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Revised: 02/12/2019] [Indexed: 11/07/2022]
15
Veloso-Silva LLW, Dores-Silva PR, Bertolino-Reis DE, Moreno-Oliveira LF, Libardi SH, Borges JC. Structural studies of Old Yellow Enzyme of Leishmania braziliensis in solution. Arch Biochem Biophys 2019;661:87-96. [DOI: 10.1016/j.abb.2018.11.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2018] [Revised: 11/10/2018] [Accepted: 11/11/2018] [Indexed: 01/18/2023]
16
The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form. PLoS One 2018;13:e0195299. [PMID: 29630677 PMCID: PMC5891007 DOI: 10.1371/journal.pone.0195299] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Accepted: 03/20/2018] [Indexed: 11/19/2022]  Open
17
Khilyas IV, Lochnit G, Ilinskaya ON. Proteomic Analysis of 2,4,6-Trinitrotoluene Degrading Yeast Yarrowia lipolytica. Front Microbiol 2017;8:2600. [PMID: 29312267 PMCID: PMC5744042 DOI: 10.3389/fmicb.2017.02600] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Accepted: 12/13/2017] [Indexed: 11/28/2022]  Open
18
Romagnolo A, Spina F, Poli A, Risso S, Serito B, Crotti M, Monti D, Brenna E, Lanfranco L, Varese GC. Old Yellow Enzyme homologues in Mucor circinelloides: expression profile and biotransformation. Sci Rep 2017;7:12093. [PMID: 28935878 PMCID: PMC5608841 DOI: 10.1038/s41598-017-12545-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Accepted: 09/06/2017] [Indexed: 12/05/2022]  Open
19
Verma S, Gazara RK, Verma PK. Transcription Factor Repertoire of Necrotrophic Fungal Phytopathogen Ascochyta rabiei: Predominance of MYB Transcription Factors As Potential Regulators of Secretome. FRONTIERS IN PLANT SCIENCE 2017;8:1037. [PMID: 28659964 PMCID: PMC5470089 DOI: 10.3389/fpls.2017.01037] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 05/30/2017] [Indexed: 06/02/2023]
20
Old Yellow Enzyme-Catalysed Asymmetric Hydrogenation: Linking Family Roots with Improved Catalysis. Catalysts 2017. [DOI: 10.3390/catal7050130] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
21
Catucci G, Romagnolo A, Spina F, Varese GC, Gilardi G, Di Nardo G. Enzyme-substrate matching in biocatalysis: in silico studies to predict substrate preference of ten putative ene-reductases from Mucor circinelloides MUT44. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcatb.2016.06.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
22
Verma S, Gazara RK, Nizam S, Parween S, Chattopadhyay D, Verma PK. Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire. Sci Rep 2016;6:24638. [PMID: 27091329 PMCID: PMC4835772 DOI: 10.1038/srep24638] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Accepted: 04/04/2016] [Indexed: 01/28/2023]  Open
23
Srivastava V, Verma PK. Genome Wide Identification of LIM Genes in Cicer arietinum and Response of Ca-2LIMs in Development, Hormone and Pathogenic Stress. PLoS One 2015;10:e0138719. [PMID: 26418014 PMCID: PMC4587737 DOI: 10.1371/journal.pone.0138719] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2015] [Accepted: 09/02/2015] [Indexed: 11/20/2022]  Open
24
Nizam S, Gazara RK, Verma S, Singh K, Verma PK. Comparative structural modeling of six old yellow enzymes (OYEs) from the necrotrophic fungus Ascochyta rabiei: insight into novel OYE classes with differences in cofactor binding, organization of active site residues and stereopreferences. PLoS One 2014;9:e95989. [PMID: 24776850 PMCID: PMC4002455 DOI: 10.1371/journal.pone.0095989] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2014] [Accepted: 04/02/2014] [Indexed: 11/29/2022]  Open
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